genome.fa.s1138.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold365
Parameters: 2 7 7 80 10 50 1000
Length:  425848

Tables:   1   2   

This is table  2  of  2  ( 227 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
300262--300287	6	4.3	6	100	0	52	19	15	15	50	1.79
300189--300383	45	4.2	45	81	10	214	21	16	18	43	1.88
300216--300385	51	3.4	50	80	11	206	21	17	18	43	1.88
300358--300394	6	5.8	6	93	3	56	18	16	16	48	1.81
300599--300630	15	2.3	15	89	10	50	40	0	18	40	1.51
303855--303921	24	2.8	24	77	11	73	13	22	22	41	1.88
303913--304017	25	4.2	26	70	19	82	20	25	20	34	1.96
303913--304017	49	2.1	50	89	1	158	20	25	20	34	1.96
303937--304048	49	2.3	49	81	3	118	22	25	19	33	1.97
304781--305100	17	18.2	17	74	12	211	45	11	13	29	1.78
304780--305167	18	21.5	18	72	14	284	45	10	13	31	1.76
304780--305101	35	9.1	34	76	10	274	45	11	13	29	1.78
304780--305167	35	10.8	35	74	15	269	45	10	13	31	1.76
305063--305144	40	2.0	40	84	9	105	37	6	13	42	1.69
305063--305180	37	3.1	37	77	12	100	38	6	13	41	1.71
305290--305321	17	1.9	16	100	0	55	56	12	12	18	1.67
305439--305481	21	2.1	20	86	4	59	62	0	2	34	1.08
305648--305678	9	3.4	9	90	0	53	0	19	0	80	0.71
305633--305679	18	2.7	18	90	3	69	0	19	2	78	0.85
305636--305694	18	3.5	17	76	15	61	0	16	1	81	0.78
305982--306052	4	17.0	4	79	13	72	1	25	0	73	0.92
306153--306191	13	2.9	13	88	3	51	0	23	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
306167--306235	37	1.9	35	85	11	95	0	14	10	75	1.05
306305--306339	11	3.1	11	87	4	52	2	20	11	65	1.37
306587--306701	59	1.9	60	85	5	162	40	4	23	32	1.74
306585--306709	30	4.2	30	81	12	152	40	5	22	31	1.77
306711--306745	7	4.7	7	89	10	52	85	0	0	14	0.59
306711--306746	16	2.3	15	90	9	54	86	0	0	13	0.58
307040--307685	76	8.4	76	90	4	894	38	18	15	27	1.91
319550--319802	18	14.2	16	71	17	103	45	11	12	30	1.77
319549--319802	35	7.1	35	75	7	226	45	11	12	30	1.77
319816--319900	34	2.5	34	85	11	111	44	9	14	31	1.76
319879--319922	22	2.0	22	86	0	61	34	6	13	45	1.70
319862--319970	39	2.8	38	81	10	116	40	8	14	36	1.76
319899--319965	19	3.6	19	78	11	75	41	5	13	38	1.69
319817--319970	17	8.5	17	69	21	82	43	9	14	33	1.77
319845--319970	18	6.7	19	73	20	81	41	8	15	34	1.78
320087--320118	17	1.9	16	100	0	55	56	12	12	18	1.67
320254--320293	16	2.5	16	83	0	53	65	0	2	32	1.06
320449--320508	13	4.8	12	76	13	59	0	15	3	81	0.81
320445--320512	25	2.6	27	82	15	97	0	17	2	79	0.86
320445--320513	26	2.7	26	80	14	90	0	17	4	78	0.91
320788--320872	4	22.0	4	75	20	74	0	25	0	74	0.82
320793--320851	17	3.5	17	77	6	59	0	25	0	74	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320785--320872	7	12.0	7	82	12	63	0	25	0	75	0.81
320816--320872	29	2.0	28	86	10	80	0	24	0	75	0.80
320971--321010	21	2.0	20	90	5	62	0	27	0	72	0.85
320987--321035	15	3.2	15	76	23	57	0	20	6	73	1.04
320991--321053	31	2.0	30	82	11	74	0	15	11	73	1.10
321122--321177	12	4.6	12	77	16	53	3	14	8	73	1.21
321398--321525	30	4.3	29	80	9	125	39	4	24	31	1.76
321402--321525	29	4.2	28	82	8	140	41	3	23	32	1.70
321401--321525	59	2.1	59	82	11	166	40	4	23	32	1.73
321477--321537	29	2.1	29	81	6	70	49	3	21	26	1.65
327379--327494	53	2.2	53	85	0	160	40	15	9	34	1.80
329664--329752	38	2.3	38	80	3	108	38	3	4	53	1.38
337769--338244	236	2.0	237	99	0	936	40	11	12	35	1.79
338943--339028	29	3.0	28	73	11	77	31	1	3	63	1.18
343107--343333	68	3.3	68	100	0	454	34	23	15	26	1.95
344771--344811	19	2.2	19	90	0	64	39	14	9	36	1.79
347711--347827	41	2.8	41	80	6	128	32	28	15	23	1.95
347711--347870	84	1.9	84	82	10	202	31	27	16	23	1.96
347719--347871	43	3.6	42	75	12	145	31	27	17	23	1.97
350109--350141	17	1.9	17	88	11	50	57	6	0	36	1.23
352219--352269	27	2.0	27	88	7	79	39	1	1	56	1.22
353087--353128	19	2.2	19	83	12	50	21	7	4	66	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353518--353575	24	2.4	24	80	8	64	68	6	0	24	1.13
354866--354894	13	2.1	14	93	6	51	34	13	17	34	1.89
365173--365215	21	2.0	21	82	8	52	55	9	4	30	1.52
366511--366584	30	2.4	30	80	10	80	43	8	17	31	1.78
369578--369644	33	2.0	33	97	0	125	32	4	22	40	1.74
370510--370907	43	9.3	43	81	5	353	25	30	19	24	1.98
377460--377598	16	8.7	16	66	23	69	29	0	21	48	1.56
377471--377647	9	20.2	9	69	16	113	29	1	20	48	1.60
377460--377647	25	7.2	25	75	13	141	29	1	21	47	1.60
377531--377595	34	1.9	34	90	0	103	32	1	18	47	1.58
377539--377614	34	2.3	34	84	4	102	30	1	21	47	1.59
378857--378881	7	3.6	7	100	0	50	76	12	12	0	1.04
378888--378921	12	2.8	12	90	4	50	64	20	8	5	1.43
379929--380148	83	2.7	82	78	6	194	35	18	15	30	1.92
379898--381169	451	2.8	450	93	1	2158	34	19	15	31	1.92
382124--382322	42	4.8	39	83	6	209	31	27	20	20	1.97
382124--382301	41	4.3	42	87	3	238	30	28	21	19	1.98
382124--382326	83	2.4	84	84	9	247	31	28	20	19	1.97
382400--382485	40	2.1	41	80	6	95	24	23	17	34	1.96
391528--391623	33	2.9	32	81	4	120	30	8	12	48	1.70
392948--392981	16	2.1	16	89	10	52	67	0	0	32	0.91
397199--397230	12	2.7	12	95	0	55	65	0	9	25	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
398368--398479	37	2.8	40	76	9	122	24	18	22	34	1.96
401161--401198	3	12.7	3	100	0	76	68	0	31	0	0.90
402980--403079	37	2.6	39	82	6	123	24	19	26	31	1.98
414156--414180	3	8.3	3	100	0	50	32	0	0	68	0.90
416122--416153	7	4.6	7	100	0	64	43	0	0	56	0.99
416071--416286	99	2.2	99	97	0	405	44	7	4	43	1.53
416221--416252	7	4.6	7	100	0	64	43	0	0	56	0.99
421124--421357	116	2.0	117	99	0	461	44	6	10	38	1.65
421973--422334	84	4.2	84	79	12	382	36	43	10	9	1.72
422024--422279	48	5.6	47	77	12	239	36	43	9	10	1.72
422131--422255	24	5.2	24	63	21	73	37	43	8	11	1.70
422024--422481	132	3.5	125	78	9	353	37	42	8	11	1.72
422246--422309	30	2.1	30	85	0	83	40	40	10	7	1.69
422024--422403	180	2.1	176	84	8	482	36	42	9	11	1.74
422287--422411	54	2.5	51	85	7	157	36	40	9	13	1.77
422324--422481	84	1.9	84	84	10	216	38	41	6	12	1.70
425413--425502	39	2.3	38	77	7	92	32	21	25	21	1.98
425669--425838	41	4.2	39	67	16	103	22	17	27	33	1.96
425642--425825	82	2.2	81	78	10	203	22	15	26	35	1.93

Tables:   1   2

The End!