Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2589

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 541

Length: 903
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39


Found at i:154 original size:24 final size:24

Alignment explanation


    Indices: 118--180  Score: 119
    Period size: 24  Copynumber: 2.7  Consensus size: 24

        108 AAAAAAAAGT

                                    
        118 AAAAAGCGC-AAAAAAGAAGAAGC
          1 AAAAAGCGCAAAAAAAGAAGAAGC

                                    
        141 AAAAAGCGCAAAAAAAGAAGAAGC
          1 AAAAAGCGCAAAAAAAGAAGAAGC

                            
        165 AAAAAGCGCAAAAAAA
          1 AAAAAGCGCAAAAAAA

        181 AAAGTTGCCT


Statistics
Matches: 39,  Mismatches: 0, Indels: 1
        0.98            0.00        0.03

Matches are distributed among these distances:
  23    9  0.23
  24   30  0.77

ACGTcount: A:0.68, C:0.13, G:0.19, T:0.00


Consensus pattern (24 bp):   
AAAAAGCGCAAAAAAAGAAGAAGC
Done.