Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1154

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2560
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38


Found at i:2384 original size:15 final size:15

Alignment explanation


    Indices: 2364--2398  Score: 70
    Period size: 15  Copynumber: 2.3  Consensus size: 15

       2354 TCAAAAGAGG

                           
       2364 AAATAAATCTTGAGA
          1 AAATAAATCTTGAGA

                           
       2379 AAATAAATCTTGAGA
          1 AAATAAATCTTGAGA

                 
       2394 AAATA
          1 AAATA

       2399 TTATACAAGT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   20  1.00

ACGTcount: A:0.57, C:0.06, G:0.11, T:0.26


Consensus pattern (15 bp):   
AAATAAATCTTGAGA
Done.