Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43060996
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2186021 characters in sequence are not A, C, G, or T
File 105 of 128
Found at i:35260117 original size:44 final size:44
Alignment explanation
Indices: 35259983--35260181 Score: 193
Period size: 44 Copynumber: 4.5 Consensus size: 44
35259973 GATATACTCT
* * * *
35259983 ACTGTAACTTCAGAGAGATAAGATCTGCGGTTTTAATCCGCTCC
1 ACTGCAACTTCAGGGAGATAAGATCTACGGCTTTAATCCGCTCC
* * ***** * ** *
35260027 ACTGCAACTTCAGGGAGACAAGATTTGTTTATTTAGTATGCCCC
1 ACTGCAACTTCAGGGAGATAAGATCTACGGCTTTAATCCGCTCC
* *
35260071 ACTGCAAGTTCAGGGAGATAAGATCTAAGGCTTTAATCCGCTCC
1 ACTGCAACTTCAGGGAGATAAGATCTACGGCTTTAATCCGCTCC
* * *
35260115 ACTGCAACTTTAGGGAGATAGGAT-TATCGGCTTTAATCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATCTA-CGGCTTTAATCCGCTCC
*
35260159 ACTGCAACTTCAGGGCGATAAGA
1 ACTGCAACTTCAGGGAGATAAGA
35260182 CTTGTCATCT
Statistics
Matches: 122, Mismatches: 32, Indels: 2
0.78 0.21 0.01
Matches are distributed among these distances:
43 2 0.02
44 120 0.98
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (44 bp):
ACTGCAACTTCAGGGAGATAAGATCTACGGCTTTAATCCGCTCC
Found at i:35260161 original size:88 final size:87
Alignment explanation
Indices: 35259983--35260181 Score: 229
Period size: 88 Copynumber: 2.3 Consensus size: 87
35259973 GATATACTCT
* * ** *
35259983 ACTGTAACTTCAGAGAGATAAGATCTGCGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGACAA
1 ACTGCAACTTCAGGGAGATAAGATCTAAGGCTTTAATCCGCTCCACTGCAACTTCAGGGAGACAA
* *
35260048 GATTTGTTTATTTAGTATGCCCC
66 GATTTG-TGATTTAATATGCCCC
* * * *
35260071 ACTGCAAGTTCAGGGAGATAAGATCTAAGGCTTTAATCCGCTCCACTGCAACTTTAGGGAGATAG
1 ACTGCAACTTCAGGGAGATAAGATCTAAGGCTTTAATCCGCTCCACTGCAACTTCAGGGAGACAA
* * *
35260136 GATTATCG-GCTTTAATCTGCTCC
66 GATT-T-GTGATTTAATATGCCCC
*
35260159 ACTGCAACTTCAGGGCGATAAGA
1 ACTGCAACTTCAGGGAGATAAGA
35260182 CTTGTCATCT
Statistics
Matches: 93, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
88 91 0.98
89 1 0.01
90 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (87 bp):
ACTGCAACTTCAGGGAGATAAGATCTAAGGCTTTAATCCGCTCCACTGCAACTTCAGGGAGACAA
GATTTGTGATTTAATATGCCCC
Found at i:35260315 original size:120 final size:120
Alignment explanation
Indices: 35260102--35260318 Score: 364
Period size: 120 Copynumber: 1.8 Consensus size: 120
35260092 GATCTAAGGC
*
35260102 TTTAATCCGCTCCACTGCAACTTTAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAAC
1 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAAC
* * *
35260167 TTCAGGGCGATAAGACTTGTCATCTTCAGTCTGCCCCACTGCAACTTCAGGTGAT
66 TTCAAGGAGATAAGACTTGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGTGAT
* *
35260222 TTTAATCCGCTCCAGTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAAC
1 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAAC
35260287 TTCAAGGAGATAAGA-TTCGCCATCTTCAGTCT
66 TTCAAGGAGATAAGACTT-GCCATCTTCAGTCT
35260319 TTTAAATTGC
Statistics
Matches: 90, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
119 2 0.02
120 88 0.98
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.30
Consensus pattern (120 bp):
TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAAC
TTCAAGGAGATAAGACTTGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGTGAT
Found at i:35260402 original size:50 final size:50
Alignment explanation
Indices: 35260343--35260516 Score: 159
Period size: 50 Copynumber: 3.5 Consensus size: 50
35260333 TTGGGGAAAC
* *
35260343 AAGATTCGCCGTCGTGGCTTCAATCTGTTCCACTACACCGCCAGAGAAGT
1 AAGATTCACCGTCGTGGCTTCAATCTGTTCCATTACACCGCCAGAGAAGT
* * * * * ** ** *** * **
35260393 AAGATTCGCCGTTGCGGCTTTAATCTTTTTAATTACAATGTTGGGGAAAC
1 AAGATTCACCGTCGTGGCTTCAATCTGTTCCATTACACCGCCAGAGAAGT
* * *
35260443 AAGATTCACCGTCGTAGCTTCAATCTGTTCCATTACACCACCAGAGGAGT
1 AAGATTCACCGTCGTGGCTTCAATCTGTTCCATTACACCGCCAGAGAAGT
*
35260493 AAGATTCACCGTCGTGGTTTCAAT
1 AAGATTCACCGTCGTGGCTTCAAT
35260517 TCGCTCCACT
Statistics
Matches: 89, Mismatches: 35, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
50 89 1.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (50 bp):
AAGATTCACCGTCGTGGCTTCAATCTGTTCCATTACACCGCCAGAGAAGT
Found at i:35260455 original size:100 final size:100
Alignment explanation
Indices: 35260316--35260504 Score: 306
Period size: 100 Copynumber: 1.9 Consensus size: 100
35260306 CCATCTTCAG
* * *
35260316 TCTTTTAAATTGCAATGTTGGGGAAACAAGATTCGCCGTCGTGGCTTCAATCTGTTCCACTACAC
1 TCTTTTAAATTACAATGTTGGGGAAACAAGATTCACCGTCGTAGCTTCAATCTGTTCCACTACAC
* *
35260381 CGCCAGAGAAGTAAGATTCGCCGTTGCGGCTTTAA
66 CACCAGAGAAGTAAGATTCACCGTTGCGGCTTTAA
* *
35260416 TCTTTTTAATTACAATGTTGGGGAAACAAGATTCACCGTCGTAGCTTCAATCTGTTCCATTACAC
1 TCTTTTAAATTACAATGTTGGGGAAACAAGATTCACCGTCGTAGCTTCAATCTGTTCCACTACAC
*
35260481 CACCAGAGGAGTAAGATTCACCGT
66 CACCAGAGAAGTAAGATTCACCGT
35260505 CGTGGTTTCA
Statistics
Matches: 81, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
100 81 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (100 bp):
TCTTTTAAATTACAATGTTGGGGAAACAAGATTCACCGTCGTAGCTTCAATCTGTTCCACTACAC
CACCAGAGAAGTAAGATTCACCGTTGCGGCTTTAA
Found at i:35260588 original size:45 final size:45
Alignment explanation
Indices: 35260538--35260679 Score: 214
Period size: 45 Copynumber: 3.2 Consensus size: 45
35260528 TAATGCCAAA
*
35260538 GAGATAGGACTTTGTGATTTTCAACCTATTCTACTGCTGACCAGG
1 GAGATAGGACTTTGTGATTTTCAACCTATTCCACTGCTGACCAGG
**** * *
35260583 GAGATAGGA-TTCACAATCTTCAACCTATTCCACTGTTGACCAGG
1 GAGATAGGACTTTGTGATTTTCAACCTATTCCACTGCTGACCAGG
35260627 GAGATAGGACTTTGTGATTTTCAACCTATTCCACTGCTGACCAGG
1 GAGATAGGACTTTGTGATTTTCAACCTATTCCACTGCTGACCAGG
35260672 GAGATAGG
1 GAGATAGG
35260680 GCTGGGTCAT
Statistics
Matches: 83, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
44 37 0.45
45 46 0.55
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.30
Consensus pattern (45 bp):
GAGATAGGACTTTGTGATTTTCAACCTATTCCACTGCTGACCAGG
Found at i:35260766 original size:44 final size:44
Alignment explanation
Indices: 35260716--35260854 Score: 111
Period size: 44 Copynumber: 3.2 Consensus size: 44
35260706 CGGTGCAGGA
35260716 AGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCCAAGG
1 AGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCCAAGG
* * * * ** * * *** *
35260760 AGGCAAG-GCTGGTGTCTTCGATCTGCTTCGCTGTTGGCGC-AGG
1 AGGCAAGATCTGCTATTTTTAACCTGCTCCGCTG-CAACCCAAGG
* * *
35260803 AAGGCAAGATCTGCTATTTTTAACCTGCTCCACTACAACCCAGGG
1 -AGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCCAAGG
35260848 AGGCAAG
1 AGGCAAG
35260855 CTGGTGTCTT
Statistics
Matches: 64, Mismatches: 27, Indels: 8
0.65 0.27 0.08
Matches are distributed among these distances:
43 21 0.33
44 25 0.39
45 18 0.28
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (44 bp):
AGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCCAAGG
Found at i:35260911 original size:87 final size:87
Alignment explanation
Indices: 35260679--35260911 Score: 371
Period size: 88 Copynumber: 2.7 Consensus size: 87
35260669 AGGGAGATAG
*
35260679 GGCTGG-GTCATTGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
1 GGCTGGTGTC-TTGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
* *
35260743 TCCGCTGCAACCCAAGGAGGCAA
65 TCCACTACAACCCAAGGAGGCAA
* *
35260766 GGCTGGTGTCTTCGATCTGCTTCGCTGTTGGCGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
1 GGCTGGTGTCTT-GATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
*
35260831 TCCACTACAACCCAGGGAGGCAA
65 TCCACTACAACCCAAGGAGGCAA
35260854 -GCTGGTGTCTTGTATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTA
1 GGCTGGTGTCTTG-ATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTA
35260912 CTGATATGCT
Statistics
Matches: 135, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
86 1 0.01
87 62 0.46
88 72 0.53
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.28
Consensus pattern (87 bp):
GGCTGGTGTCTTGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCT
CCACTACAACCCAAGGAGGCAA
Found at i:35268181 original size:23 final size:22
Alignment explanation
Indices: 35268138--35268195 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
35268128 AAAGGGTATC
* *
35268138 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
35268159 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
35268182 TGCATATCATATCT
1 TACAAATCATATCT
35268196 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:35268211 original size:21 final size:21
Alignment explanation
Indices: 35268174--35268228 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
35268164 AATCATATCT
35268174 TCTAAGATTGC--ATATCATA
1 TCTAAGATTGCATATATCATA
35268193 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATATCATA
*
35268214 TCTAAGATTACATAT
1 TCTAAGATTGCATAT
35268229 CCTTGATGAT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
19 11 0.33
21 22 0.67
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (21 bp):
TCTAAGATTGCATATATCATA
Found at i:35269228 original size:32 final size:32
Alignment explanation
Indices: 35269182--35269244 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
35269172 TGTCAATCAT
35269182 TTCAATATCCAACAAGC-TTAAAACATAATAAA
1 TTCAATATCCAACAA-CTTTAAAACATAATAAA
*
35269214 TTCAATATCTAACAACTTTAAAACATAATAA
1 TTCAATATCCAACAACTTTAAAACATAATAA
35269245 TTTTAAAACC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 1 0.03
32 28 0.97
ACGTcount: A:0.52, C:0.17, G:0.02, T:0.29
Consensus pattern (32 bp):
TTCAATATCCAACAACTTTAAAACATAATAAA
Found at i:35269260 original size:32 final size:32
Alignment explanation
Indices: 35269190--35269260 Score: 81
Period size: 32 Copynumber: 2.2 Consensus size: 32
35269180 ATTTCAATAT
* *
35269190 CCAACAAGCTTAAAACATAATAAATTCAATAT
1 CCAACAAGCTTAAAACATAATAAATTCAAAAC
* * *
35269222 CTAACAA-CTTTAAAACATAATAATTTTAAAAC
1 CCAACAAGC-TTAAAACATAATAAATTCAAAAC
35269254 CCAACAA
1 CCAACAA
35269261 ACTGATTTCA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
31 1 0.03
32 31 0.97
ACGTcount: A:0.54, C:0.20, G:0.01, T:0.25
Consensus pattern (32 bp):
CCAACAAGCTTAAAACATAATAAATTCAAAAC
Found at i:35270704 original size:21 final size:21
Alignment explanation
Indices: 35270678--35270742 Score: 105
Period size: 21 Copynumber: 3.1 Consensus size: 21
35270668 GCCATAGGAT
35270678 TTACAAATCAATATGCAATCA
1 TTACAAATCAATATGCAATCA
35270699 TTACAAATCAATATGCAATCA
1 TTACAAATCAATATGCAATCA
*
35270720 TTACAAAT-AATTATGTAATCA
1 TTACAAATCAA-TATGCAATCA
35270741 TT
1 TT
35270743 CATCGTTCAT
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
20 2 0.05
21 40 0.95
ACGTcount: A:0.46, C:0.15, G:0.05, T:0.34
Consensus pattern (21 bp):
TTACAAATCAATATGCAATCA
Found at i:35273650 original size:44 final size:44
Alignment explanation
Indices: 35273583--35273670 Score: 124
Period size: 44 Copynumber: 2.0 Consensus size: 44
35273573 GCCATGTAAG
* *
35273583 CACACATAAATGGCACATTTTAAGTT-GGATTAAAGAGAGAAAGA
1 CACACATAAATGACACATATTAAGTTAGG-TTAAAGAGAGAAAGA
* *
35273627 CACACATAAATTACACATATTAAGTTAGGTTAAGGAGAGAAAGA
1 CACACATAAATGACACATATTAAGTTAGGTTAAAGAGAGAAAGA
35273671 GAATGTCATT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 37 0.95
45 2 0.05
ACGTcount: A:0.47, C:0.11, G:0.19, T:0.23
Consensus pattern (44 bp):
CACACATAAATGACACATATTAAGTTAGGTTAAAGAGAGAAAGA
Found at i:35275145 original size:27 final size:28
Alignment explanation
Indices: 35275109--35275164 Score: 96
Period size: 27 Copynumber: 2.0 Consensus size: 28
35275099 ACTAAAATGT
35275109 TATAATTTTTTTTATTTACCAAAAAATA
1 TATAATTTTTTTTATTTACCAAAAAATA
*
35275137 TATAA-TTTTTTTATTTACCAAAATATA
1 TATAATTTTTTTTATTTACCAAAAAATA
35275164 T
1 T
35275165 CAAAAAAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
27 22 0.81
28 5 0.19
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (28 bp):
TATAATTTTTTTTATTTACCAAAAAATA
Found at i:35275301 original size:27 final size:27
Alignment explanation
Indices: 35275223--35275303 Score: 117
Period size: 27 Copynumber: 3.0 Consensus size: 27
35275213 TCCTTGGGTG
* **
35275223 GAGGGAAGCAGGTTGGCGGCATCAAAC
1 GAGGGAAGCAGGTTGGCGGCACCAGTC
*
35275250 AAGGGAAGCAGGTTGGCGGCACCAGTC
1 GAGGGAAGCAGGTTGGCGGCACCAGTC
*
35275277 GAGGGAAGCAGATTGGCGGCACCAGTC
1 GAGGGAAGCAGGTTGGCGGCACCAGTC
35275304 CTGCCAACCA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.27, C:0.21, G:0.41, T:0.11
Consensus pattern (27 bp):
GAGGGAAGCAGGTTGGCGGCACCAGTC
Found at i:35275315 original size:27 final size:27
Alignment explanation
Indices: 35275262--35275325 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
35275252 GGGAAGCAGG
* ** *
35275262 TTGGCGGCACCAGTCGAGGGAAGCAGA
1 TTGGCGGCACCAGTCCAGCCAACCAGA
*
35275289 TTGGCGGCACCAGTCCTGCCAACCAGA
1 TTGGCGGCACCAGTCCAGCCAACCAGA
*
35275316 TTGGTGGCAC
1 TTGGCGGCAC
35275326 TACTCGTGTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.22, C:0.28, G:0.34, T:0.16
Consensus pattern (27 bp):
TTGGCGGCACCAGTCCAGCCAACCAGA
Found at i:35275621 original size:3 final size:3
Alignment explanation
Indices: 35275613--35275638 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
35275603 AATTTTATAG
35275613 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
35275639 AGATGTTAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:35275732 original size:61 final size:62
Alignment explanation
Indices: 35275644--35275761 Score: 154
Period size: 61 Copynumber: 1.9 Consensus size: 62
35275634 TATTAAGATG
* *
35275644 TTAGTTAGTATTATTGTTAGT-AAAAA-ATTAGTATTATTTTTGTAGTTAGTTATTAATAATT
1 TTAGTTAGTATTATTGTTAGTAAAAAATATTAATATTATTATTGT-GTTAGTTATTAATAATT
35275705 TTAGTTAGTATTATT-TT-GTATATAAAATTATTAATATTATTATTGTGTTAGTTATTA
1 TTAGTTAGTATTATTGTTAGTA-A-AAAA-TATTAATATTATTATTGTGTTAGTTATTA
35275762 GGATTAGTGG
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
59 2 0.04
60 2 0.04
61 16 0.32
62 4 0.08
63 11 0.22
64 15 0.30
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (62 bp):
TTAGTTAGTATTATTGTTAGTAAAAAATATTAATATTATTATTGTGTTAGTTATTAATAATT
Found at i:35276305 original size:18 final size:18
Alignment explanation
Indices: 35276284--35276320 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
35276274 GTTGGTGGTA
* *
35276284 AAGAAGAATGTGGTTGCG
1 AAGAAGAAGGTGGTGGCG
35276302 AAGAAGAAGGTGGTGGCG
1 AAGAAGAAGGTGGTGGCG
35276320 A
1 A
35276321 TCATTGGGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.35, C:0.05, G:0.43, T:0.16
Consensus pattern (18 bp):
AAGAAGAAGGTGGTGGCG
Found at i:35278413 original size:17 final size:19
Alignment explanation
Indices: 35278379--35278413 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
35278369 TCATTTCTAA
35278379 TTTTATAATTTATATAATG
1 TTTTATAATTTATATAATG
35278398 TTTTA-AATTTAT-TAAT
1 TTTTATAATTTATATAAT
35278414 TTAGTGTGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 7 0.44
19 5 0.31
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (19 bp):
TTTTATAATTTATATAATG
Found at i:35278593 original size:26 final size:28
Alignment explanation
Indices: 35278562--35278628 Score: 104
Period size: 27 Copynumber: 2.5 Consensus size: 28
35278552 ACTTTTTTTG
35278562 ATATATTTTGGTAAAT-AAAAAA-TTAT
1 ATATATTTTGGTAAATAAAAAAAGTTAT
35278588 ATATATTTTGGTAAATAAAAAAAGTTAT
1 ATATATTTTGGTAAATAAAAAAAGTTAT
*
35278616 A-ATAATTTGGTAA
1 ATATATTTTGGTAA
35278629 TTTTTTATTT
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
26 16 0.42
27 17 0.45
28 5 0.13
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.40
Consensus pattern (28 bp):
ATATATTTTGGTAAATAAAAAAAGTTAT
Found at i:35278689 original size:19 final size:18
Alignment explanation
Indices: 35278665--35278704 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
35278655 TATAAAACCC
35278665 ATAATAAAACATTACAAAA
1 ATAATAAAACATTA-AAAA
*
35278684 ATAATAAAATATTAAAAA
1 ATAATAAAACATTAAAAA
35278702 ATA
1 ATA
35278705 CCAAAATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (18 bp):
ATAATAAAACATTAAAAA
Found at i:35278703 original size:18 final size:19
Alignment explanation
Indices: 35278665--35278715 Score: 68
Period size: 18 Copynumber: 2.7 Consensus size: 19
35278655 TATAAAACCC
*
35278665 ATAATAAAACATTACAAAA
1 ATAATAAAATATTACAAAA
35278684 ATAATAAAATATTA-AAAA
1 ATAATAAAATATTACAAAA
**
35278702 ATACCAAAATATTA
1 ATAATAAAATATTA
35278716 TATATTTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
18 16 0.55
19 13 0.45
ACGTcount: A:0.67, C:0.08, G:0.00, T:0.25
Consensus pattern (19 bp):
ATAATAAAATATTACAAAA
Found at i:35279055 original size:10 final size:10
Alignment explanation
Indices: 35279040--35279193 Score: 53
Period size: 10 Copynumber: 15.7 Consensus size: 10
35279030 CTTCCTTCCC
35279040 TCTTC-TTCT
1 TCTTCTTTCT
35279049 TCTTTCTTT-T
1 TC-TTCTTTCT
*
35279059 T-TTTTTCTCT
1 TCTTCTT-TCT
*
35279069 TCTCCTTTCCT
1 TCTTCTTT-CT
35279080 T-TTCTTTC-
1 TCTTCTTTCT
*
35279088 -CTTATTT-T
1 TCTTCTTTCT
*
35279096 TCTTTCTTTCC
1 TC-TTCTTTCT
**
35279107 TCCCCTTTCCT
1 TCTTCTTT-CT
35279118 T-TTCTTTC-
1 TCTTCTTTCT
35279126 -CTTCTTT-T
1 TCTTCTTTCT
*
35279134 TCTTTCTTTCC
1 TC-TTCTTTCT
*
35279145 TCTCCTTTCCT
1 TCTTCTTT-CT
*
35279156 T-TTCATTCT
1 TCTTCTTTCT
*
35279165 TTTTCTTTCT
1 TCTTCTTTCT
35279175 TCCTTTCTTTCT
1 T-C-TTCTTTCT
35279187 TCTTCTT
1 TCTTCTT
35279194 CCCCTCTCCT
Statistics
Matches: 105, Mismatches: 19, Indels: 41
0.64 0.12 0.25
Matches are distributed among these distances:
8 15 0.14
9 10 0.10
10 54 0.51
11 17 0.16
12 9 0.09
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.68
Consensus pattern (10 bp):
TCTTCTTTCT
Found at i:35279085 original size:33 final size:34
Alignment explanation
Indices: 35279014--35279168 Score: 142
Period size: 38 Copynumber: 4.4 Consensus size: 34
35279004 AATTACCTTA
*
35279014 TTTTC-TTCTTTTTTTCCTTC-CTTC-CCTCTT-C
1 TTTTCTTTCTTTTTTTCTTTCTCTTCTCCT-TTCC
35279045 TTCTTCTTTCTTTTTTT-TTTCTCTTCTCCTTTCC
1 TT-TTCTTTCTTTTTTTCTTTCTCTTCTCCTTTCC
35279079 TTTTCTTTCCTTATTTTTCTTTCT-TTCCTCCCCTTTCC
1 TTTTCTTT-CTT-TTTTTCTTTCTCTT-CT--CCTTTCC
*
35279117 TTTTCTTTCCTTCTTTTTCTTTCTTTCCTCTCCTTTCC
1 TTTTCTTT-CTT-TTTTTCTTTC--TCTTCTCCTTTCC
*
35279155 TTTTCATTCTTTTT
1 TTTTCTTTCTTTTT
35279169 CTTTCTTCCT
Statistics
Matches: 106, Mismatches: 4, Indels: 23
0.80 0.03 0.17
Matches are distributed among these distances:
31 2 0.02
32 6 0.06
33 22 0.21
34 9 0.08
35 7 0.07
36 10 0.09
37 3 0.03
38 43 0.41
40 3 0.03
41 1 0.01
ACGTcount: A:0.01, C:0.32, G:0.00, T:0.67
Consensus pattern (34 bp):
TTTTCTTTCTTTTTTTCTTTCTCTTCTCCTTTCC
Found at i:35279101 original size:18 final size:18
Alignment explanation
Indices: 35279080--35279190 Score: 86
Period size: 18 Copynumber: 6.1 Consensus size: 18
35279070 CTCCTTTCCT
*
35279080 TTTCTTTCCTTATTTTTC
1 TTTCTTTCCTTCTTTTTC
* * *
35279098 TTTCTTTCCTCCCCTTTCC
1 TTTCTTTCCT-TCTTTTTC
35279117 TTTTCTTTCCTTCTTTTTC
1 -TTTCTTTCCTTCTTTTTC
*
35279136 TTTCTTTCC-TCTCCTTTC
1 TTTCTTTCCTTCT-TTTTC
* *
35279154 -CT-TTTCATTCTTTTTC
1 TTTCTTTCCTTCTTTTTC
35279170 TTTC-TTCCTTTCTTTCTTC
1 TTTCTTTCC-TTCTTT-TTC
35279189 TT
1 TT
35279191 CTTCCCCTCT
Statistics
Matches: 72, Mismatches: 13, Indels: 15
0.72 0.13 0.15
Matches are distributed among these distances:
16 8 0.11
17 11 0.15
18 29 0.40
19 14 0.19
20 10 0.14
ACGTcount: A:0.02, C:0.32, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTCTTTCCTTCTTTTTC
Found at i:35279121 original size:38 final size:38
Alignment explanation
Indices: 35279072--35279181 Score: 159
Period size: 38 Copynumber: 2.9 Consensus size: 38
35279062 TTTCTCTTCT
35279072 CCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCCTCC
1 CCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCCTCC
* *
35279110 CCTTTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCCTCT
1 CCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCCTCC
* * *
35279148 CCTTTCCTTTTCATT-CTTTTTCTTTCTTCCTTTC
1 CCTTTCCTTTTCTTTCCTTATT-TTTCTTTCTTTC
35279182 TTTCTTCTTC
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
37 5 0.08
38 61 0.92
ACGTcount: A:0.02, C:0.34, G:0.00, T:0.65
Consensus pattern (38 bp):
CCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCCTCC
Found at i:35279142 original size:28 final size:28
Alignment explanation
Indices: 35279111--35279190 Score: 76
Period size: 34 Copynumber: 2.8 Consensus size: 28
35279101 CTTTCCTCCC
35279111 CTTTCCTTTTCTTTCCTTCTTTTTCTTT
1 CTTTCCTTTTCTTTCCTTCTTTTTCTTT
*
35279139 CTTTCCTCTCCTTTCCTTTTCATTCTTTTTCTTT
1 CTTT-C-CT--TTT-C-TTTCCTTCTTTTTCTTT
35279173 C-TTCC-TTTCTTT-CTTCTT
1 CTTTCCTTTTCTTTCCTTCTT
35279191 CTTCCCCTCT
Statistics
Matches: 44, Mismatches: 2, Indels: 15
0.72 0.03 0.25
Matches are distributed among these distances:
25 5 0.11
26 3 0.07
27 1 0.02
28 7 0.16
29 1 0.02
30 2 0.05
31 1 0.02
32 4 0.09
33 3 0.07
34 17 0.39
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.68
Consensus pattern (28 bp):
CTTTCCTTTTCTTTCCTTCTTTTTCTTT
Found at i:35279166 original size:14 final size:14
Alignment explanation
Indices: 35279066--35279145 Score: 56
Period size: 14 Copynumber: 5.6 Consensus size: 14
35279056 TTTTTTTTTC
*
35279066 TCTTCTCCTTTCCTTT
1 TCTT-TCCTTTTC-TT
35279082 TCTTTCCTTATT-TT
1 TCTTTCCTT-TTCTT
* *
35279096 TCTTT-CTTTCCTCC
1 TCTTTCCTTTTCT-T
*
35279110 CCTTTCCTTTTCTT
1 TCTTTCCTTTTCTT
* *
35279124 TCCTTCTTTTTCTT
1 TCTTTCCTTTTCTT
35279138 TCTTTCCT
1 TCTTTCCT
35279146 CTCCTTTCCT
Statistics
Matches: 49, Mismatches: 11, Indels: 10
0.70 0.16 0.14
Matches are distributed among these distances:
12 1 0.02
13 4 0.08
14 28 0.57
15 11 0.22
16 5 0.10
ACGTcount: A:0.01, C:0.34, G:0.00, T:0.65
Consensus pattern (14 bp):
TCTTTCCTTTTCTT
Found at i:35279186 original size:22 final size:23
Alignment explanation
Indices: 35279151--35279193 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
35279141 TTCCTCTCCT
*
35279151 TTCCTTTTCATTCTTTTTCTTTC
1 TTCCTTTTCATTCTTCTTCTTTC
*
35279174 TTCC-TTTCTTTCTTCTTCTT
1 TTCCTTTTCATTCTTCTTCTT
35279194 CCCCTCTCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.02, C:0.28, G:0.00, T:0.70
Consensus pattern (23 bp):
TTCCTTTTCATTCTTCTTCTTTC
Found at i:35279192 original size:18 final size:18
Alignment explanation
Indices: 35279015--35279195 Score: 70
Period size: 18 Copynumber: 10.4 Consensus size: 18
35279005 ATTACCTTAT
*
35279015 TTTCTT-CTTT-TTTTCC
1 TTTCTTCCTTTCTTTTTC
* *
35279031 TTCCTTCCCTCTTCTTCTTC
1 TTTCTT-CCT-TTCTTTTTC
35279051 TTTCTT--TTT-TTTTTC
1 TTTCTTCCTTTCTTTTTC
*
35279066 TCTTC-TCCTTTCCTTTTC
1 T-TTCTTCCTTTCTTTTTC
*
35279084 TTTCCTT-ATTT-TTCTTTC
1 TTT-CTTCCTTTCTT-TTTC
* *
35279102 TTTCCTCCCCTTTCCTTTTC
1 TTT-CT-TCCTTTCTTTTTC
35279122 --T-TTCC-TTCTTTTTC
1 TTTCTTCCTTTCTTTTTC
* *
35279136 TTTCTTTCCTCTC-CTTTC
1 TTTC-TTCCTTTCTTTTTC
* *
35279154 CTT-TT-CATTCTTTTTC
1 TTTCTTCCTTTCTTTTTC
35279170 TTTCTTCCTTTCTTTCTTC
1 TTTCTTCCTTTCTTT-TTC
35279189 -TTCTTCC
1 TTTCTTCC
35279196 CCTCTCCTTC
Statistics
Matches: 121, Mismatches: 21, Indels: 44
0.65 0.11 0.24
Matches are distributed among these distances:
14 8 0.07
15 12 0.10
16 20 0.17
17 9 0.07
18 47 0.39
19 8 0.07
20 16 0.13
21 1 0.01
ACGTcount: A:0.01, C:0.33, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTCTTCCTTTCTTTTTC
Found at i:35279192 original size:28 final size:30
Alignment explanation
Indices: 35279113--35279194 Score: 89
Period size: 28 Copynumber: 2.7 Consensus size: 30
35279103 TTCCTCCCCT
*
35279113 TTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCC
1 TTCC-TTTCTTT-CTTCTTCTTCTTTCTTTCC
*
35279145 TCTCCTTTCCTT-TTCATTCTT-TTTCTTT-C
1 T-TCCTTTCTTTCTTC-TTCTTCTTTCTTTCC
35279174 TTCCTTTCTTTCTTCTTCTTC
1 TTCCTTTCTTTCTTCTTCTTC
35279195 CCCTCTCCTT
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
28 14 0.33
29 5 0.12
30 10 0.23
31 4 0.09
32 7 0.16
33 3 0.07
ACGTcount: A:0.01, C:0.32, G:0.00, T:0.67
Consensus pattern (30 bp):
TTCCTTTCTTTCTTCTTCTTCTTTCTTTCC
Found at i:35279207 original size:42 final size:40
Alignment explanation
Indices: 35279019--35279207 Score: 98
Period size: 38 Copynumber: 4.8 Consensus size: 40
35279009 CCTTATTTTC
*
35279019 TTCTTTTTTTCCT-TCCTT-CCCTCTTC-TTCTTCTTTCTTT
1 TTCTTTCTTTCCTCTCCTTCCCCTC-TCATTCTT-TTTCTTT
* * *
35279058 TT-TTT-TTCTCTTCTCCTT-TCCT-T--TTCTTTCCTTATTT
1 TTCTTTCTT-TCCTCTCCTTCCCCTCTCATTCTTT--TTCTTT
* *
35279095 TTCTTTCTTTCCTCCCCTT-TCCT-T--TTCTTTCCTTCTTT
1 TTCTTTCTTTCCTCTCCTTCCCCTCTCATTCTTT--TTCTTT
* * *
35279133 TTCTTTCTTTCCTCTCCTTTCCTTTTCATTCTTTTTCTTT
1 TTCTTTCTTTCCTCTCCTTCCCCTCTCATTCTTTTTCTTT
* * *
35279173 CTTCCTTTCTTTCTTCTTCTTCCCCTCTCCTTCTT
1 -TT-CTTTCTTTCCTCTCCTTCCCCTCTCATTCTT
35279208 CCCCCCACCA
Statistics
Matches: 123, Mismatches: 15, Indels: 21
0.77 0.09 0.13
Matches are distributed among these distances:
35 1 0.01
36 5 0.04
37 10 0.08
38 53 0.43
39 14 0.11
40 7 0.06
41 2 0.02
42 31 0.25
ACGTcount: A:0.01, C:0.34, G:0.00, T:0.65
Consensus pattern (40 bp):
TTCTTTCTTTCCTCTCCTTCCCCTCTCATTCTTTTTCTTT
Found at i:35279364 original size:10 final size:9
Alignment explanation
Indices: 35279349--35279381 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
35279339 TCAGTTCAGG
35279349 TTTTTTTTC
1 TTTTTTTTC
35279358 TTTTTTTTC
1 TTTTTTTTC
*
35279367 TTTTTTTTG
1 TTTTTTTTC
35279376 TTTTTT
1 TTTTTT
35279382 AGTTTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.00, C:0.06, G:0.03, T:0.91
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:35279388 original size:9 final size:9
Alignment explanation
Indices: 35279348--35279392 Score: 56
Period size: 9 Copynumber: 5.1 Consensus size: 9
35279338 ATCAGTTCAG
35279348 GTTTTTTTT
1 GTTTTTTTT
*
35279357 CTTTTTTTT
1 GTTTTTTTT
*
35279366 CTTTTTTTT
1 GTTTTTTTT
*
35279375 G-TTTTTTA
1 GTTTTTTTT
35279383 GTTTTTTTT
1 GTTTTTTTT
35279392 G
1 G
35279393 ATATATTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
8 7 0.23
9 24 0.77
ACGTcount: A:0.02, C:0.04, G:0.09, T:0.84
Consensus pattern (9 bp):
GTTTTTTTT
Found at i:35279392 original size:17 final size:17
Alignment explanation
Indices: 35279348--35279392 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
35279338 ATCAGTTCAG
* *
35279348 GTTTTTTTTCTTTTTTTT
1 GTTTTTTTT-GTTTTTTA
*
35279366 CTTTTTTTTGTTTTTTA
1 GTTTTTTTTGTTTTTTA
35279383 GTTTTTTTTG
1 GTTTTTTTTG
35279393 ATATATTTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
17 15 0.65
18 8 0.35
ACGTcount: A:0.02, C:0.04, G:0.09, T:0.84
Consensus pattern (17 bp):
GTTTTTTTTGTTTTTTA
Found at i:35279423 original size:27 final size:29
Alignment explanation
Indices: 35279393--35279461 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 29
35279383 GTTTTTTTTG
*
35279393 ATATATTTTGGTGAAT-AAAAAAA-TTAT
1 ATATATTTTGGTAAATAAAAAAAAGTTAT
35279420 ATATATTTTGGTAAATAAAAAAAAGTTAT
1 ATATATTTTGGTAAATAAAAAAAAGTTAT
*
35279449 A-ACATTTTGGTAA
1 ATATATTTTGGTAA
35279462 TTTTTTATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 15 0.39
28 18 0.47
29 5 0.13
ACGTcount: A:0.48, C:0.01, G:0.12, T:0.39
Consensus pattern (29 bp):
ATATATTTTGGTAAATAAAAAAAAGTTAT
Found at i:35279768 original size:29 final size:29
Alignment explanation
Indices: 35279726--35279809 Score: 125
Period size: 29 Copynumber: 2.9 Consensus size: 29
35279716 ACATTTAATG
35279726 GTGAAGCCTGCCTGAAGGCGACACCACTA
1 GTGAAGCCTGCCTGAAGGCGACACCACTA
35279755 GTGAAGCCTGCCTGAAGGC-AGCACCACTA
1 GTGAAGCCTGCCTGAAGGCGA-CACCACTA
* *
35279784 GTGAAGCCTTCCTGACAGGCGGCACC
1 GTGAAGCCTGCCTGA-AGGCGACACC
35279810 GATGTCAGCC
Statistics
Matches: 50, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
28 1 0.02
29 41 0.82
30 8 0.16
ACGTcount: A:0.25, C:0.32, G:0.29, T:0.14
Consensus pattern (29 bp):
GTGAAGCCTGCCTGAAGGCGACACCACTA
Found at i:35280091 original size:38 final size:37
Alignment explanation
Indices: 35280048--35280147 Score: 112
Period size: 37 Copynumber: 2.7 Consensus size: 37
35280038 AAAAGAGAAT
* *
35280048 TTTGTTTAGGGTTTGAATAAAAAAGAAGTATTA-AAGGG
1 TTTGTTTAGGGTTTAAATAAAAAA-AAG-ATTAGAAGGC
* * * *
35280086 TTTGTTTAGGATTTTAACAAAAAAAAGATTAGATGGC
1 TTTGTTTAGGGTTTAAATAAAAAAAAGATTAGAAGGC
*
35280123 TTTCTTTAGGGTTTAAATAAAAAAA
1 TTTGTTTAGGGTTTAAATAAAAAAA
35280148 GGGTTAAAAA
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
36 4 0.08
37 27 0.52
38 21 0.40
ACGTcount: A:0.41, C:0.03, G:0.20, T:0.36
Consensus pattern (37 bp):
TTTGTTTAGGGTTTAAATAAAAAAAAGATTAGAAGGC
Found at i:35280718 original size:14 final size:14
Alignment explanation
Indices: 35280689--35280720 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
35280679 TGTAATGATA
35280689 TTATTGTACTATAT
1 TTATTGTACTATAT
*
35280703 TTATTGTATTATAT
1 TTATTGTACTATAT
35280717 TTAT
1 TTAT
35280721 GTGTTTTGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.28, C:0.03, G:0.06, T:0.62
Consensus pattern (14 bp):
TTATTGTACTATAT
Found at i:35281007 original size:28 final size:28
Alignment explanation
Indices: 35280967--35281022 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
35280957 AAAAACGGTT
35280967 AATGTGATGGAAAGTGATGGAAATAAAC
1 AATGTGATGGAAAGTGATGGAAATAAAC
35280995 AATGTGATGGAAAGTGATGGAAATAAAC
1 AATGTGATGGAAAGTGATGGAAATAAAC
35281023 TTGTTATTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.46, C:0.04, G:0.29, T:0.21
Consensus pattern (28 bp):
AATGTGATGGAAAGTGATGGAAATAAAC
Found at i:35283770 original size:40 final size:40
Alignment explanation
Indices: 35283715--35283942 Score: 321
Period size: 40 Copynumber: 5.7 Consensus size: 40
35283705 GGTGCTCAGA
35283715 CGAGCCATACCTAGTGAATCTATTGAAACGTATGCGCTTT
1 CGAGCCATACCTAGTGAATCTATTGAAACGTATGCGCTTT
* ** *
35283755 CGAGCCATACCTAGTGAATCTATTTAAACAAATGTGCTTT
1 CGAGCCATACCTAGTGAATCTATTGAAACGTATGCGCTTT
* * *
35283795 CGAGCCATACCTAGTGAATCTACTAAAACGTATGCACTTT
1 CGAGCCATACCTAGTGAATCTATTGAAACGTATGCGCTTT
* *
35283835 CGAGCCATACCTAGTGAATCTATTGAAATGTATGTGCTTT
1 CGAGCCATACCTAGTGAATCTATTGAAACGTATGCGCTTT
* * *
35283875 CGAGCCATACCTAGTGAATATACTAAAACGTATGCGCTTT
1 CGAGCCATACCTAGTGAATCTATTGAAACGTATGCGCTTT
* * *
35283915 CAAGCTATACCTACTGAATCTATTGAAA
1 CGAGCCATACCTAGTGAATCTATTGAAA
35283943 GAATGCTCTA
Statistics
Matches: 162, Mismatches: 26, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 162 1.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (40 bp):
CGAGCCATACCTAGTGAATCTATTGAAACGTATGCGCTTT
Found at i:35283808 original size:80 final size:80
Alignment explanation
Indices: 35283715--35283942 Score: 357
Period size: 80 Copynumber: 2.9 Consensus size: 80
35283705 GGTGCTCAGA
* * *
35283715 CGAGCCATACCTAGTGAATCTATTGAAACGTATGCGCTTTCGAGCCATACCTAGTGAATCTATTT
1 CGAGCCATACCTAGTGAATCTACTAAAACGTATGCGCTTTCGAGCCATACCTAGTGAATCTATTG
35283780 AAACAAATGTGCTTT
66 AAACAAATGTGCTTT
*
35283795 CGAGCCATACCTAGTGAATCTACTAAAACGTATGCACTTTCGAGCCATACCTAGTGAATCTATTG
1 CGAGCCATACCTAGTGAATCTACTAAAACGTATGCGCTTTCGAGCCATACCTAGTGAATCTATTG
***
35283860 AAATGTATGTGCTTT
66 AAACAAATGTGCTTT
* * * *
35283875 CGAGCCATACCTAGTGAATATACTAAAACGTATGCGCTTTCAAGCTATACCTACTGAATCTATTG
1 CGAGCCATACCTAGTGAATCTACTAAAACGTATGCGCTTTCGAGCCATACCTAGTGAATCTATTG
35283940 AAA
66 AAA
35283943 GAATGCTCTA
Statistics
Matches: 136, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
80 136 1.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (80 bp):
CGAGCCATACCTAGTGAATCTACTAAAACGTATGCGCTTTCGAGCCATACCTAGTGAATCTATTG
AAACAAATGTGCTTT
Found at i:35284398 original size:20 final size:20
Alignment explanation
Indices: 35284353--35284398 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 20
35284343 TGTTTATTTC
35284353 TCTTTTTAGTTGTTTTGTTT
1 TCTTTTTAGTTGTTTTGTTT
*
35284373 TATTTTTA-TT-TTCTTGTATT
1 TCTTTTTAGTTGTT-TTGT-TT
35284393 TCTTTT
1 TCTTTT
35284399 AATTATTATC
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 2 0.09
19 6 0.27
20 14 0.64
ACGTcount: A:0.09, C:0.07, G:0.09, T:0.76
Consensus pattern (20 bp):
TCTTTTTAGTTGTTTTGTTT
Found at i:35285691 original size:27 final size:26
Alignment explanation
Indices: 35285671--35286012 Score: 312
Period size: 27 Copynumber: 12.7 Consensus size: 26
35285661 GGGGTATAAT
35285671 AGTCATTTTATCCTATGGGGGTATTTC
1 AGTCATTTTA-CCTATGGGGGTATTTC
* *
35285698 GGTCATTTTACCCTATGAGGGTATTTC
1 AGTCATTTTA-CCTATGGGGGTATTTC
* *
35285725 -GTTCATTCTACCTTATAGGGGTATTTC
1 AG-TCATTTTACC-TATGGGGGTATTTC
*
35285752 -GATCATTTTACCCTATTGGGGTATTTC
1 AG-TCATTTTA-CCTATGGGGGTATTTC
*
35285779 TGTCATTTTACCTTATGGGGGTATTTC
1 AGTCATTTTACC-TATGGGGGTATTTC
* *
35285806 AGTCATTTTACCTTATGAGGGTAATTC
1 AGTCATTTTACC-TATGGGGGTATTTC
* * * *
35285833 GGTCATTCTACCTTATGAGGGTAATTC
1 AGTCATTTTACC-TATGGGGGTATTTC
*
35285860 GGTCATTTTATCCTATGGGGGTATTTC
1 AGTCATTTTA-CCTATGGGGGTATTTC
* *
35285887 AGTCATTTTATCTTATGGGGGTACTTC
1 AGTCATTTTA-CCTATGGGGGTATTTC
**
35285914 -GATCATTTTATCCTATGAAGGTATTTC
1 AG-TCATTTTA-CCTATGGGGGTATTTC
* * * *
35285941 GGTTATTCTACCCTACGGGGGTATTTC
1 AGTCATTTTA-CCTATGGGGGTATTTC
*
35285968 GGTCATTTTACCCTATGGGGGTATTTC
1 AGTCATTTTA-CCTATGGGGGTATTTC
*
35285995 GGTCATTTTACCCTATGG
1 AGTCATTTTA-CCTATGG
35286013 TTCCCAAGCA
Statistics
Matches: 273, Mismatches: 34, Indels: 16
0.85 0.11 0.05
Matches are distributed among these distances:
26 6 0.02
27 261 0.96
28 6 0.02
ACGTcount: A:0.19, C:0.17, G:0.22, T:0.42
Consensus pattern (26 bp):
AGTCATTTTACCTATGGGGGTATTTC
Found at i:35285720 original size:54 final size:54
Alignment explanation
Indices: 35285671--35286012 Score: 393
Period size: 54 Copynumber: 6.3 Consensus size: 54
35285661 GGGGTATAAT
*
35285671 AGTCATTTTATCC-TATGGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTC
1 AGTCATTCTA-CCTTATGGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTC
* *
35285725 -GTTCATTCTACCTTATAGGGGTATTTCGATCATTTTACCCTATTG-GGGTATTTC
1 AG-TCATTCTACCTTATGGGGGTATTTCGGTCATTTTACCCTA-TGAGGGTATTTC
* * * * *
35285779 TGTCATTTTACCTTATGGGGGTATTTCAGTCATTTTACCTTATGAGGGTAATTC
1 AGTCATTCTACCTTATGGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTC
* * * * *
35285833 GGTCATTCTACCTTATGAGGGTAATTCGGTCATTTTATCCTATGGGGGTATTTC
1 AGTCATTCTACCTTATGGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTC
* * * * * *
35285887 AGTCATTTTATCTTATGGGGGTACTTCGATCATTTTATCCTATGAAGGTATTTC
1 AGTCATTCTACCTTATGGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTC
* * * * *
35285941 GGTTATTCTACCCTACGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTC
1 AGTCATTCTACCTTATGGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTC
* * *
35285995 GGTCATTTTACCCTATGG
1 AGTCATTCTACCTTATGG
35286013 TTCCCAAGCA
Statistics
Matches: 243, Mismatches: 40, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
53 5 0.02
54 235 0.97
55 3 0.01
ACGTcount: A:0.19, C:0.17, G:0.22, T:0.42
Consensus pattern (54 bp):
AGTCATTCTACCTTATGGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTC
Found at i:35285745 original size:81 final size:81
Alignment explanation
Indices: 35285673--35286011 Score: 407
Period size: 81 Copynumber: 4.2 Consensus size: 81
35285663 GGTATAATAG
* * *
35285673 TCATTTTATCCTATGGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTC-GTTCATTCTACC
1 TCATTTTATCCTATGAGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCAG-TCATTTTACC
35285737 TTATAGGGGTATTTCGA
65 TTATAGGGGTATTTCGA
* * *
35285754 TCATTTTACCCTATTG-GGGTATTTCTGTCATTTTACCTTATGGGGGTATTTCAGTCATTTTACC
1 TCATTTTATCCTA-TGAGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCAGTCATTTTACC
* *
35285818 TTAT-GAGGGTAATTCGG
65 TTATAG-GGGTATTTCGA
* * * *
35285835 TCATTCTA-CCTTATGAGGGTAATTCGGTCATTTTATCCTATGGGGGTATTTCAGTCATTTTATC
1 TCATTTTATCC-TATGAGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCAGTCATTTTACC
* *
35285899 TTATGGGGGTACTTCGA
65 TTATAGGGGTATTTCGA
* * * * * *
35285916 TCATTTTATCCTATGAAGGTATTTCGGTTATTCTACCCTACGGGGGTATTTCGGTCATTTTACCC
1 TCATTTTATCCTATGAGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCT
* *
35285981 TATGGGGGTATTTCGG
66 TATAGGGGTATTTCGA
*
35285997 TCATTTTACCCTATG
1 TCATTTTATCCTATG
35286012 GTTCCCAAGC
Statistics
Matches: 223, Mismatches: 28, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
80 5 0.02
81 212 0.95
82 6 0.03
ACGTcount: A:0.19, C:0.17, G:0.21, T:0.43
Consensus pattern (81 bp):
TCATTTTATCCTATGAGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCT
TATAGGGGTATTTCGA
Found at i:35289221 original size:14 final size:14
Alignment explanation
Indices: 35289199--35289228 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
35289189 GTTGCGTTCG
*
35289199 TAGTTAATTTAGAT
1 TAGTAAATTTAGAT
35289213 TAGTAAATTTAGAT
1 TAGTAAATTTAGAT
35289227 TA
1 TA
35289229 AAAACAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.13, T:0.47
Consensus pattern (14 bp):
TAGTAAATTTAGAT
Found at i:35292556 original size:13 final size:13
Alignment explanation
Indices: 35292538--35292565 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
35292528 CGGGATATCT
35292538 AAAACGTTTCTGA
1 AAAACGTTTCTGA
35292551 AAAACGTTTCTGA
1 AAAACGTTTCTGA
35292564 AA
1 AA
35292566 GGCGCCCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (13 bp):
AAAACGTTTCTGA
Found at i:35294992 original size:18 final size:17
Alignment explanation
Indices: 35294961--35295015 Score: 65
Period size: 17 Copynumber: 3.2 Consensus size: 17
35294951 AATCGCCACC
35294961 AATATTCTTTTGTTTGT
1 AATATTCTTTTGTTTGT
*
35294978 AATATTCTATTTGTTTTT
1 AATATTCT-TTTGTTTGT
* * *
35294996 TATATTCTTTGGTATGT
1 AATATTCTTTTGTTTGT
35295013 AAT
1 AAT
35295016 CGTCACTATC
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
17 16 0.52
18 15 0.48
ACGTcount: A:0.22, C:0.05, G:0.11, T:0.62
Consensus pattern (17 bp):
AATATTCTTTTGTTTGT
Found at i:35295967 original size:33 final size:32
Alignment explanation
Indices: 35295930--35296040 Score: 125
Period size: 32 Copynumber: 3.4 Consensus size: 32
35295920 GAATGTTATA
*
35295930 TGAAATGATAACAAATATCAACTTTTTATTTTG
1 TGAAATGATAACAAATATCAAC-TTTAATTTTG
*
35295963 TGAAATTATAACAAAT-TACAACTTTAATTTTG
1 TGAAATGATAACAAATAT-CAACTTTAATTTTG
* * ***
35295995 TAAAATGATAACAAACATCAACTAGCATTTTG
1 TGAAATGATAACAAATATCAACTTTAATTTTG
*
35296027 TTAAATGATAACAA
1 TGAAATGATAACAA
35296041 TATTCCTCTA
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
32 47 0.70
33 20 0.30
ACGTcount: A:0.45, C:0.11, G:0.08, T:0.36
Consensus pattern (32 bp):
TGAAATGATAACAAATATCAACTTTAATTTTG
Found at i:35302908 original size:31 final size:30
Alignment explanation
Indices: 35302873--35302933 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
35302863 GATTCTTATG
*
35302873 CCAATATCCCAATTCCCATATCTTTGACTTT
1 CCAATAT-CCAATACCCATATCTTTGACTTT
***
35302904 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATCCAATACCCATATCTTTGACTTT
35302934 ATTTGATACC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 19 0.73
31 7 0.27
ACGTcount: A:0.26, C:0.28, G:0.05, T:0.41
Consensus pattern (30 bp):
CCAATATCCAATACCCATATCTTTGACTTT
Found at i:35302923 original size:30 final size:29
Alignment explanation
Indices: 35302887--35302963 Score: 108
Period size: 25 Copynumber: 2.8 Consensus size: 29
35302877 TATCCCAATT
35302887 CCCATATCTTTGACTTTCCAATATTTGATA
1 CCCATATCTTTGACTTTCC-ATATTTGATA
35302917 CCCATATCTTTGAC-TT---TATTTGATA
1 CCCATATCTTTGACTTTCCATATTTGATA
*
35302942 CCCTTATCTTTGACTTTCCATA
1 CCCATATCTTTGACTTTCCATA
35302964 AATATGGATG
Statistics
Matches: 42, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
25 22 0.52
26 2 0.05
29 4 0.10
30 14 0.33
ACGTcount: A:0.23, C:0.25, G:0.06, T:0.45
Consensus pattern (29 bp):
CCCATATCTTTGACTTTCCATATTTGATA
Found at i:35308362 original size:21 final size:21
Alignment explanation
Indices: 35308320--35308382 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
35308310 TATGCCTAAA
* *
35308320 TTTAAATTTAAATTTCTA-TAT
1 TTTAATTTTTAATTT-TATTAT
35308341 TTTAATTTTTAATTTTATTAT
1 TTTAATTTTTAATTTTATTAT
* *
35308362 TATAATTTTTTAATGTTATTA
1 TTTAA-TTTTTAATTTTATTA
35308383 GCCGGTCCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
20 2 0.06
21 20 0.56
22 14 0.39
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (21 bp):
TTTAATTTTTAATTTTATTAT
Found at i:35308371 original size:22 final size:21
Alignment explanation
Indices: 35308330--35308382 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
35308320 TTTAAATTTA
*
35308330 AATTTCTA-TATTTTAATTTTT
1 AATTT-TATTATTATAATTTTT
35308351 AATTTTATTATTATAATTTTTT
1 AATTTTATTATTATAA-TTTTT
*
35308373 AATGTTATTA
1 AATTTTATTA
35308383 GCCGGTCCAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 2 0.07
21 12 0.43
22 14 0.50
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (21 bp):
AATTTTATTATTATAATTTTT
Found at i:35312175 original size:20 final size:21
Alignment explanation
Indices: 35312136--35312176 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
35312126 AACACTCCAG
*
35312136 TTTGTGGATGAACCACCAGTA
1 TTTGTAGATGAACCACCAGTA
*
35312157 TTTGTAGAT-AACTACCAGTA
1 TTTGTAGATGAACCACCAGTA
35312177 GTACAAATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.32
Consensus pattern (21 bp):
TTTGTAGATGAACCACCAGTA
Found at i:35318831 original size:24 final size:25
Alignment explanation
Indices: 35318799--35318848 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 25
35318789 ACCTCTGAAA
*
35318799 AATATATTT-ATATTATTTTTAATTT
1 AATATATTTAATA-AATTTTTAATTT
35318824 AATA-ATTTAATAAATTTTTAATTT
1 AATATATTTAATAAATTTTTAATTT
35318848 A
1 A
35318849 TTAAAATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (25 bp):
AATATATTTAATAAATTTTTAATTT
Found at i:35318847 original size:16 final size:16
Alignment explanation
Indices: 35318826--35318859 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
35318816 TTTAATTTAA
*
35318826 TAATTTAATAAATTTT
1 TAATTTAATAAAATTT
*
35318842 TAATTTATTAAAATTT
1 TAATTTAATAAAATTT
35318858 TA
1 TA
35318860 TATATAGTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TAATTTAATAAAATTT
Found at i:35319839 original size:16 final size:18
Alignment explanation
Indices: 35319815--35319851 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
35319805 ATGAAATTTA
*
35319815 TTTATTAAA-ATAATAAT
1 TTTATTAAATAAAATAAT
35319832 TTTA-TAAATAAAATAAT
1 TTTATTAAATAAAATAAT
35319849 TTT
1 TTT
35319852 CTTTAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TTTATTAAATAAAATAAT
Found at i:35320635 original size:6 final size:6
Alignment explanation
Indices: 35320624--35320670 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
35320614 CGATAGATAA
* **
35320624 AAAACC AAAACC AAAATC AAGCCC AAAA-C AAAACC AAAACC GAAAAC
1 AAAACC AAAACC AAAACC AAAACC AAAACC AAAACC AAAACC -AAAAC
35320671 TTAGTCCAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
5 5 0.15
6 23 0.70
7 5 0.15
ACGTcount: A:0.64, C:0.30, G:0.04, T:0.02
Consensus pattern (6 bp):
AAAACC
Found at i:35321788 original size:27 final size:29
Alignment explanation
Indices: 35321760--35321846 Score: 102
Period size: 29 Copynumber: 3.0 Consensus size: 29
35321750 ACATGGACTG
*
35321760 GCACATGGCCTACCACACGGCTGTGTGGC
1 GCACATGGCCTACCACACGGCCGTGTGGC
* * * *
35321789 GCACAAGGCTTAACACACAGCCGTGTGGC
1 GCACATGGCCTACCACACGGCCGTGTGGC
* * *
35321818 GCACATAGTCTACCACACGGCCATGTGGC
1 GCACATGGCCTACCACACGGCCGTGTGGC
35321847 ACTATAAAAT
Statistics
Matches: 46, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.23, C:0.33, G:0.28, T:0.16
Consensus pattern (29 bp):
GCACATGGCCTACCACACGGCCGTGTGGC
Found at i:35324460 original size:15 final size:16
Alignment explanation
Indices: 35324430--35324469 Score: 64
Period size: 15 Copynumber: 2.5 Consensus size: 16
35324420 AATATTTTTT
35324430 AATTTTAAATTGTTTAA
1 AATTTT-AATTGTTTAA
35324447 AATTTTAATT-TTTAA
1 AATTTTAATTGTTTAA
35324462 AATTTTAA
1 AATTTTAA
35324470 GAATCAAGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 13 0.57
16 4 0.17
17 6 0.26
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (16 bp):
AATTTTAATTGTTTAA
Found at i:35324468 original size:23 final size:23
Alignment explanation
Indices: 35324426--35324469 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
35324416 TTTAAATATT
*
35324426 TTTTAATTTTAAATTGTTTAAAA
1 TTTTAATTTTAAAATGTTTAAAA
35324449 TTTTAATTTTTAAAAT-TTTAA
1 TTTTAA-TTTTAAAATGTTTAA
35324470 GAATCAAGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (23 bp):
TTTTAATTTTAAAATGTTTAAAA
Found at i:35338538 original size:22 final size:21
Alignment explanation
Indices: 35338503--35338560 Score: 53
Period size: 22 Copynumber: 2.7 Consensus size: 21
35338493 TTAAAGGGTC
* *
35338503 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
35338524 TACAAAATCATATCTTCTGAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
35338547 TGCATATCATATCT
1 TACAAATCATATCT
35338561 AAGATTGCAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 4 0.13
22 17 0.57
23 9 0.30
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:35339163 original size:44 final size:44
Alignment explanation
Indices: 35339115--35339232 Score: 146
Period size: 44 Copynumber: 2.7 Consensus size: 44
35339105 TCTGATCCAC
* * * *
35339115 TCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCAATCTGT
1 TCCACTGCAACCTCAGGGAGATAAGATTGGCTTATTCAATCTGT
**
35339159 TCCACTGCAACCTCAGGGAGATAAGATTGGCTTATTCAATCTAC
1 TCCACTGCAACCTCAGGGAGATAAGATTGGCTTATTCAATCTGT
* * * *
35339203 TCTACTGTAACCTCGGGGAGATGAGATTGG
1 TCCACTGCAACCTCAGGGAGATAAGATTGG
35339233 ATGCGATCTG
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 64 1.00
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (44 bp):
TCCACTGCAACCTCAGGGAGATAAGATTGGCTTATTCAATCTGT
Found at i:35340118 original size:45 final size:45
Alignment explanation
Indices: 35339327--35340107 Score: 1030
Period size: 45 Copynumber: 17.4 Consensus size: 45
35339317 GTTACTTCTG
* * * * * *
35339327 TCTTCGATCTACTTTGCTGTCAATACAGGAAAATAAGATCTGTTG
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
* ** * * *
35339372 TTTTCGATCTACTTCGCTATCAATACAGGAAGACGAGATCCGTTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
* * *
35339417 TCTTTGATCTACTTTGCTGCCAATACAGGAAGACAAGATCTGTTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
* *
35339462 TCTTCGATCTACTTCGCTACCAATATAGGAAGACAAGATCTGCTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
* *
35339507 TCTTCGATCTACTTCGCTGCCAGTACAGGAAGACAAAATCTGCTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
* * *
35339552 TCTTCGATCTACTTTGCTGCCAATACAAGAAGACAAGATCTACTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
* *
35339597 CCTTCGATCTACTTCGCTGCCAATACGGGAAGACAAGATCTGCTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
* * *
35339642 TCTTCGATCTACTTCGCTGCTAGTACAGGAAGACAAAATCTGCTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
*
35339687 TCTTCGATCTACTTCGCTGCCAATACAGGAAGAC----TCTGTTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
* * *
35339728 TCTTCAATCTACTTCACTGCCAGTACAGGAAGACAAGATCTGCTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
* *
35339773 TCTTCGATCTACTTCGCTGCCAATACAGGAAGATAAGATCTGTTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
* * * *
35339818 TCTTTGATCTACTTCGCTGCCAGTACAGGAAGACAAGTTCTGTTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
* * *
35339863 TCTTCAATCTACTTCGGTGCCAGTACAGGAAGACAAGATCTGCTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
* * *
35339908 TATTCGATCTACTTCGCTACCAATATAGGAAGACAAGATCTGCTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
* * * *
35339953 TCTTTGATCTACTTCGCTGCCAATACAAGAAGACAAGATCTGTTT
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
* * * *
35339998 TCTTCGATCTACTTCGTTACCAATATAGGAAGATAAGATCTGCTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
* * * * *
35340043 TCTTTGATCTACTTCGCTACCAATATAGGAAGACAAGATCTGTTT
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
35340088 TCTTCGATCTACTTCGCTGC
1 TCTTCGATCTACTTCGCTGC
35340108 TAGTATAGGA
Statistics
Matches: 644, Mismatches: 88, Indels: 8
0.87 0.12 0.01
Matches are distributed among these distances:
41 37 0.06
45 607 0.94
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.31
Consensus pattern (45 bp):
TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
Found at i:35348051 original size:30 final size:30
Alignment explanation
Indices: 35348017--35348079 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
35348007 GATTAGGGTG
*
35348017 GTTTTGGCAATAAAGACGAAGTATAATTTA
1 GTTTTGGCAATAAAGACAAAGTATAATTTA
*
35348047 GTTTTGGTAATAAAGACAAAGTATAATTTA
1 GTTTTGGCAATAAAGACAAAGTATAATTTA
35348077 GTT
1 GTT
35348080 ATCACTTTGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.40, C:0.05, G:0.19, T:0.37
Consensus pattern (30 bp):
GTTTTGGCAATAAAGACAAAGTATAATTTA
Found at i:35350027 original size:20 final size:20
Alignment explanation
Indices: 35349989--35350027 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
35349979 AATAACTGCA
*
35349989 AAAAAAAGAACGTGAAAAAT
1 AAAAAAAGAACGTAAAAAAT
* *
35350009 AAAAGAAGAGCGTAAAAAA
1 AAAAAAAGAACGTAAAAAA
35350028 CTTGGAACGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.69, C:0.05, G:0.18, T:0.08
Consensus pattern (20 bp):
AAAAAAAGAACGTAAAAAAT
Found at i:35361518 original size:138 final size:138
Alignment explanation
Indices: 35361270--35361545 Score: 525
Period size: 138 Copynumber: 2.0 Consensus size: 138
35361260 CTAGAAAAGG
35361270 TCTTCCTAATAAGATTGGTATCTTACAATATTCTTCAAAGTCTAAAACCACAAAATCTGTTGGAA
1 TCTTCCTAATAAGATTGGTATCTTACAATATTCTTCAAAGTCTAAAACCACAAAATCTGTTGGAA
*
35361335 TAATGAAACTGTACACTTTAACCAACACATGTTCCAATACTCCTTTCAGATGTACTGAAGATCTT
66 TAATGAAACTGCACACTTTAACCAACACATGTTCCAATACTCCTTTCAGATGTACTGAAGATCTT
35361400 TCAGCCAA
131 TCAGCCAA
*
35361408 TCTTCCTAATAAGATTGGTATCTTACAATCTTCTTCAAAGTCTAAAACCACAAAATCTGTTGGAA
1 TCTTCCTAATAAGATTGGTATCTTACAATATTCTTCAAAGTCTAAAACCACAAAATCTGTTGGAA
*
35361473 TAATGAAACTGCACACTTTAACCAACGCATGTTCCAATACTCCTTTCAGATGTACTGAAGATCTT
66 TAATGAAACTGCACACTTTAACCAACACATGTTCCAATACTCCTTTCAGATGTACTGAAGATCTT
35361538 TCAGCCAA
131 TCAGCCAA
35361546 CTGTAATGTT
Statistics
Matches: 135, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
138 135 1.00
ACGTcount: A:0.35, C:0.22, G:0.11, T:0.32
Consensus pattern (138 bp):
TCTTCCTAATAAGATTGGTATCTTACAATATTCTTCAAAGTCTAAAACCACAAAATCTGTTGGAA
TAATGAAACTGCACACTTTAACCAACACATGTTCCAATACTCCTTTCAGATGTACTGAAGATCTT
TCAGCCAA
Found at i:35369242 original size:117 final size:118
Alignment explanation
Indices: 35369034--35369268 Score: 463
Period size: 117 Copynumber: 2.0 Consensus size: 118
35369024 ACCAATATTT
35369034 CTTTTTTTTCTTAATATAAAAATTACTACATAATGGGAGCATTACAAATACCATATTCCAACCGC
1 CTTTTTTTTCTTAATATAAAAATTACTACATAATGGGAGCATTACAAATACCATATTCCAACCGC
35369099 TATTCCCAATCACCGGTGGCTTCTTTCTTTGTTTACTCACTTAATGCTTTAAA
66 TATTCCCAATCACCGGTGGCTTCTTTCTTTGTTTACTCACTTAATGCTTTAAA
35369152 CTTTTTTTTC-TAATATAAAAATTACTACATAATGGGAGCATTACAAATACCATATTCCAACCGC
1 CTTTTTTTTCTTAATATAAAAATTACTACATAATGGGAGCATTACAAATACCATATTCCAACCGC
35369216 TATTCCCAATCACCGGTGGCTTCTTTCTTTGTTTACTCACTTAATGCTTTAAA
66 TATTCCCAATCACCGGTGGCTTCTTTCTTTGTTTACTCACTTAATGCTTTAAA
35369269 TATTATTATA
Statistics
Matches: 117, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
117 107 0.91
118 10 0.09
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.39
Consensus pattern (118 bp):
CTTTTTTTTCTTAATATAAAAATTACTACATAATGGGAGCATTACAAATACCATATTCCAACCGC
TATTCCCAATCACCGGTGGCTTCTTTCTTTGTTTACTCACTTAATGCTTTAAA
Found at i:35372003 original size:30 final size:30
Alignment explanation
Indices: 35371947--35372004 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
35371937 ACTTAACAAG
* *
35371947 CAAATGCCTCTAAAGTAATACCAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
* *
35371977 CAAATGCCTTTAAAATAATAATAAAATT
1 CAAATGCCTCTAAAATAATAACAAAATT
35372005 TAAAATAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.52, C:0.16, G:0.05, T:0.28
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:35376212 original size:13 final size:13
Alignment explanation
Indices: 35376194--35376218 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35376184 GCATTTGCAA
35376194 ATATATTTTATAT
1 ATATATTTTATAT
35376207 ATATATTTTATA
1 ATATATTTTATA
35376219 AAATAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
ATATATTTTATAT
Found at i:35376214 original size:25 final size:25
Alignment explanation
Indices: 35376162--35376214 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
35376152 AAGTTCTAAG
*
35376162 TTTGCAAATATATTTTATATATGCA
1 TTTGCAAATATATTTTATATATACA
*
35376187 TTTGCAAATATATTTTATATATATA
1 TTTGCAAATATATTTTATATATACA
35376212 TTT
1 TTT
35376215 TATAAAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.36, C:0.06, G:0.06, T:0.53
Consensus pattern (25 bp):
TTTGCAAATATATTTTATATATACA
Found at i:35378016 original size:28 final size:29
Alignment explanation
Indices: 35377961--35378016 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
35377951 AAGAAGAAAT
*
35377961 ATAAACATATTGGGCCATTTATGTAAAAA
1 ATAAAAATATTGGGCCATTTATGTAAAAA
*
35377990 ATAAAAATATT-GGTCATTTAT-TAAAAA
1 ATAAAAATATTGGGCCATTTATGTAAAAA
35378017 GACGAAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 6 0.24
28 9 0.36
29 10 0.40
ACGTcount: A:0.48, C:0.07, G:0.11, T:0.34
Consensus pattern (29 bp):
ATAAAAATATTGGGCCATTTATGTAAAAA
Found at i:35378024 original size:29 final size:29
Alignment explanation
Indices: 35377967--35378026 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
35377957 AAATATAAAC
*
35377967 ATATTGGGCCATTTATGTAAAAAATAAAA
1 ATATTGGGCCATTTATGTAAAAAAGAAAA
*
35377996 ATATT-GGTCATTTAT-TAAAAAGACGAAAA
1 ATATTGGGCCATTTATGTAAAAA-A-GAAAA
35378025 AT
1 AT
35378027 GAAAGACGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 6 0.22
28 10 0.37
29 11 0.41
ACGTcount: A:0.48, C:0.07, G:0.13, T:0.32
Consensus pattern (29 bp):
ATATTGGGCCATTTATGTAAAAAAGAAAA
Found at i:35378426 original size:30 final size:32
Alignment explanation
Indices: 35378360--35378433 Score: 91
Period size: 31 Copynumber: 2.4 Consensus size: 32
35378350 AAATGTTAAC
*
35378360 GAGTGACTGATTTGTCACTTTTTGATAACGTT
1 GAGTGACTAATTTGTCACTTTTTGATAACGTT
* *
35378392 -AGTGACTAATTTGTTATTTTTTGA-AA-GTT
1 GAGTGACTAATTTGTCACTTTTTGATAACGTT
35378421 GAGTGACTGAATT
1 GAGTGACT-AATT
35378434 CAAATCAGAG
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
29 3 0.08
30 9 0.24
31 25 0.68
ACGTcount: A:0.26, C:0.08, G:0.22, T:0.45
Consensus pattern (32 bp):
GAGTGACTAATTTGTCACTTTTTGATAACGTT
Found at i:35378446 original size:20 final size:20
Alignment explanation
Indices: 35378421--35378469 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
35378411 TTTGAAAGTT
35378421 GAGTGACTGAATTCAAATCA
1 GAGTGACTGAATTCAAATCA
*
35378441 GAGTGACTGAATTGAAATCA
1 GAGTGACTGAATTCAAATCA
35378461 GAGTGACTG
1 GAGTGACTG
35378470 TTTTGTCAGC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.37, C:0.12, G:0.27, T:0.24
Consensus pattern (20 bp):
GAGTGACTGAATTCAAATCA
Found at i:35378829 original size:37 final size:38
Alignment explanation
Indices: 35378787--35378870 Score: 102
Period size: 38 Copynumber: 2.3 Consensus size: 38
35378777 CTATATATTT
* * *
35378787 TATTTTTTATAAAATTT-TTCAATTTT-TTGATTTTTA
1 TATTTTTTATAAAATTTAATAAATTTTATTGAATTTTA
*
35378823 TAATTTTTATTAAAATTTAATAAATTTTATTGAATTTTA
1 TATTTTTTA-TAAAATTTAATAAATTTTATTGAATTTTA
35378862 T-TTTTTTAT
1 TATTTTTTAT
35378871 CATTTTTTGT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
36 8 0.20
37 9 0.22
38 13 0.32
39 10 0.25
ACGTcount: A:0.32, C:0.01, G:0.02, T:0.64
Consensus pattern (38 bp):
TATTTTTTATAAAATTTAATAAATTTTATTGAATTTTA
Found at i:35378861 original size:20 final size:20
Alignment explanation
Indices: 35378807--35378861 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 20
35378797 AAAATTTTTC
*
35378807 AATTTT-TTG-ATTTTTATA
1 AATTTTATTGAATTTTAATA
* * *
35378825 ATTTTTATTAAAATTTAATA
1 AATTTTATTGAATTTTAATA
35378845 AATTTTATTGAATTTTA
1 AATTTTATTGAATTTTA
35378862 TTTTTTTATC
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
18 5 0.18
19 2 0.07
20 21 0.75
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (20 bp):
AATTTTATTGAATTTTAATA
Found at i:35394086 original size:359 final size:359
Alignment explanation
Indices: 35393427--35394144 Score: 1256
Period size: 359 Copynumber: 2.0 Consensus size: 359
35393417 GCTTTCCCAG
* *
35393427 GGTGATAATCAATCACTAGCTCATAATCTTTAATTAGTTCGAGCCATCTTCGTTGTCGCAAATTC
1 GGTGATAATCAATCACTAACTCATAATCTTTAATTAGTTCGAGCCATCTTCGTTGCCGCAAATTC
* *
35393492 AAGTCTTTCTGATTCATTAAATACTTTAAGCTCTTATGATCAGTGAAGATTCGGCACTTCTCACC
66 AAGTCTTTCTGACTCATTAAATACTTCAAGCTCTTATGATCAGTGAAGATTCGGCACTTCTCACC
35393557 ATACAAATAATGACGCCAAATTTTTAAAGCAAAAACAATGGCAGCCAATTCTAAATCATGCGTCG
131 ATACAAATAATGACGCCAAATTTTTAAAGCAAAAACAATGGCAGCCAATTCTAAATCATGCGTCG
*
35393622 GATAATTCTTCTCATGTGGTTTCAGCTGTCTCGAAGCATAAGCTATTACTTTGCCCTCTTGCATT
196 GATAATTCTTCTCATGCGGTTTCAGCTGTCTCGAAGCATAAGCTATTACTTTGCCCTCTTGCATT
*
35393687 AACACACACCCAAGACCATTCAACGATGCATCACTGTAAATTACAAACTCCTTCTCAGACTCAGG
261 AACACACACCCAAGACCATTCAACGATGCATCACTGTAAATTACAAACTCCTTCCCAGACTCAGG
*
35393752 TTGCACCAACACTGGCGCCTCAGTCAATAATGCC
326 TTGCACCAACACTGGCGCCTCAGTCAACAATGCC
* * * * *
35393786 GGTGATAATCAATCACTAATTCATAGTTTTTAATTAGTTCGAGCCATCTTCTTTGCCGTAAATTC
1 GGTGATAATCAATCACTAACTCATAATCTTTAATTAGTTCGAGCCATCTTCGTTGCCGCAAATTC
* * * *
35393851 AAGTCTTTTTGGCTCATTAAATACTTCAAGCTCTTATGATCAGTGAAGATTTGGCACTTTTCACC
66 AAGTCTTTCTGACTCATTAAATACTTCAAGCTCTTATGATCAGTGAAGATTCGGCACTTCTCACC
*
35393916 ATACAATTAATGACGCCAAATTTTTAAAGCAAAAACAATGGCAGCCAATTCTAAATCATGCGTCG
131 ATACAAATAATGACGCCAAATTTTTAAAGCAAAAACAATGGCAGCCAATTCTAAATCATGCGTCG
* *
35393981 GATAATTCTTCTCGTGCGGTTTCAGCTGTCTTGAAGCATAAGCTATTACTTTGCCCTCTTGCATT
196 GATAATTCTTCTCATGCGGTTTCAGCTGTCTCGAAGCATAAGCTATTACTTTGCCCTCTTGCATT
*
35394046 AACACACACCCAAGACCATTCAACGATGCATCACTGTAAATTACAAACTCCTTCCCTGACTCAGG
261 AACACACACCCAAGACCATTCAACGATGCATCACTGTAAATTACAAACTCCTTCCCAGACTCAGG
35394111 TTGCACCAACACTGGCGCCTCAGTCAACAATGCC
326 TTGCACCAACACTGGCGCCTCAGTCAACAATGCC
35394145 TTCAATTTCT
Statistics
Matches: 339, Mismatches: 20, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
359 339 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.31
Consensus pattern (359 bp):
GGTGATAATCAATCACTAACTCATAATCTTTAATTAGTTCGAGCCATCTTCGTTGCCGCAAATTC
AAGTCTTTCTGACTCATTAAATACTTCAAGCTCTTATGATCAGTGAAGATTCGGCACTTCTCACC
ATACAAATAATGACGCCAAATTTTTAAAGCAAAAACAATGGCAGCCAATTCTAAATCATGCGTCG
GATAATTCTTCTCATGCGGTTTCAGCTGTCTCGAAGCATAAGCTATTACTTTGCCCTCTTGCATT
AACACACACCCAAGACCATTCAACGATGCATCACTGTAAATTACAAACTCCTTCCCAGACTCAGG
TTGCACCAACACTGGCGCCTCAGTCAACAATGCC
Found at i:35395155 original size:325 final size:314
Alignment explanation
Indices: 35394571--35395208 Score: 999
Period size: 325 Copynumber: 2.0 Consensus size: 314
35394561 TTGGTTCATT
*
35394571 AAATCCATAAAAATAGCCGGAGCATTAGTTAACCCAAAAGGCATTACCAGAAATTCATAATGTCC
1 AAATCCATAAAAATAGCCGGAGCATTAGTCAACCCAAAAGGCATTACCAGAAATTCATAATGTCC
* *
35394636 ATACCTCGTTCTGAAAGCAGTCTTTGGCACATCGGACTCCCTAACTCTCAATTGATAGTAACCAG
66 ATACCTCGTTCTGAAAGCAGTCTTTAGCACATCGGACTCCCTAACTCTCAACTGATAGTAACCAG
* *
35394701 ACCTCAGATCAATCTTTGAAAATATTGTTGCCCCTTTTAGTTGGTCAAACAAATCATCAATTCTA
131 ACCTCAGATCAATCTTTGAAAACAATGTTGCCCCTTTTAGTTGGTCAAACAAATCATCAATTCTA
*
35394766 GGCAAAGGATACTTGTTCTTTATAGTCACTTTGTTGAGCTGACGATAGTCAATACAAAGTCTCAT
196 GGCAAAGGATACTTGTTCTTTATAGTCACTTTGTTGAGCTGACGATAATCAATACAAAGTCTCAT
*
35394831 AGAGCCGTCCTTCTTTTTCACAAATAACACAGGAGCACCCCAAGGAGAAAAACG
261 AGAGCCGTCATTCTTTTTCACAAATAACACAGGAGCACCCCAAGGAGAAAAACG
* * * * *
35394885 AAATCCATAAAAATAGCCGGAGCATTTGTCGACCCAAGAGGCATTACCAGAAATTCATAGTGTCT
1 AAATCCATAAAAATAGCCGGAGCATTAGTCAACCCAAAAGGCATTACCAGAAATTCATAATGTCC
* *
35394950 ATACCTTGTTCTGAAAGC-GCTCTTTAGCACATCGGACTCCTTAACTCTCAACTGATAGTAACCA
66 ATACCTCGTTCTGAAAGCAG-TCTTTAGCACATCGGACTCCCTAACTCTCAACTGATAGTAACCA
* * *
35395014 GATCTTAGGTTAATCTTTGAAAAATCTTTGAAAACAATGTTGCTCCTTTTAGTTGGTCAAACAAA
130 GACCTCA-G---ATC-------AATCTTTGAAAACAATGTTGCCCCTTTTAGTTGGTCAAACAAA
*
35395079 TCATCAATTCTCGGCAAAGGATACTTGTTCTTTATAGTCACTTTGTTGAGCTGACGATAATCAAT
184 TCATCAATTCTAGGCAAAGGATACTTGTTCTTTATAGTCACTTTGTTGAGCTGACGATAATCAAT
35395144 ACAAAGTCTCATAGAGCCGTCATTCTTTTTCACAAATAACACAGGAGCACCCCAAGGAGAAAAAC
249 ACAAAGTCTCATAGAGCCGTCATTCTTTTTCACAAATAACACAGGAGCACCCCAAGGAGAAAAAC
35395209 TTGGCCTCAC
Statistics
Matches: 294, Mismatches: 18, Indels: 13
0.90 0.06 0.04
Matches are distributed among these distances:
313 1 0.00
314 122 0.41
315 1 0.00
318 3 0.01
325 167 0.57
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (314 bp):
AAATCCATAAAAATAGCCGGAGCATTAGTCAACCCAAAAGGCATTACCAGAAATTCATAATGTCC
ATACCTCGTTCTGAAAGCAGTCTTTAGCACATCGGACTCCCTAACTCTCAACTGATAGTAACCAG
ACCTCAGATCAATCTTTGAAAACAATGTTGCCCCTTTTAGTTGGTCAAACAAATCATCAATTCTA
GGCAAAGGATACTTGTTCTTTATAGTCACTTTGTTGAGCTGACGATAATCAATACAAAGTCTCAT
AGAGCCGTCATTCTTTTTCACAAATAACACAGGAGCACCCCAAGGAGAAAAACG
Found at i:35398400 original size:24 final size:24
Alignment explanation
Indices: 35398371--35398419 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
35398361 AAAATAGTTT
35398371 TATATTTAATTTGCTCTTTTGTAG
1 TATATTTAATTTGCTCTTTTGTAG
35398395 TATATTTAATTTGCTCTTTTGTAG
1 TATATTTAATTTGCTCTTTTGTAG
35398419 T
1 T
35398420 TTTTGATACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.20, C:0.08, G:0.12, T:0.59
Consensus pattern (24 bp):
TATATTTAATTTGCTCTTTTGTAG
Found at i:35400337 original size:25 final size:25
Alignment explanation
Indices: 35400309--35400364 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
35400299 TCAGAAAGTT
*
35400309 ACACGGCCTGGCACACGGGCGTGTG
1 ACACGGCCCGGCACACGGGCGTGTG
** *
35400334 ACACAACCCGGTACACGGGCGTGTG
1 ACACGGCCCGGCACACGGGCGTGTG
35400359 ACACGG
1 ACACGG
35400365 GCGTGTGACC
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.21, C:0.32, G:0.36, T:0.11
Consensus pattern (25 bp):
ACACGGCCCGGCACACGGGCGTGTG
Found at i:35400364 original size:13 final size:13
Alignment explanation
Indices: 35400346--35400373 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
35400336 ACAACCCGGT
35400346 ACACGGGCGTGTG
1 ACACGGGCGTGTG
35400359 ACACGGGCGTGTG
1 ACACGGGCGTGTG
35400372 AC
1 AC
35400374 CCTAATTAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.18, C:0.25, G:0.43, T:0.14
Consensus pattern (13 bp):
ACACGGGCGTGTG
Found at i:35405352 original size:46 final size:45
Alignment explanation
Indices: 35405272--35405410 Score: 188
Period size: 46 Copynumber: 3.0 Consensus size: 45
35405262 CATGGCAAAG
* * * *
35405272 TGTGGAACATAGGTATGGTAATTCAGTAAAGAAAACCATACTGAGT
1 TGTGAAACGTAGGTATGGTATTTCAG-CAAGAAAACCATACTGAGT
*
35405318 TGTGAAACGTAGGTATGGTATTTCAGCAACGAAAACCATATTGAGT
1 TGTGAAACGTAGGTATGGTATTTCAGCAA-GAAAACCATACTGAGT
* *
35405364 TGTGAAAAGTAGGTATGGTATTTCAGTGAAGAAAACCATACTGAGT
1 TGTGAAACGTAGGTATGGTATTTCAG-CAAGAAAACCATACTGAGT
35405410 T
1 T
35405411 ATAGCATTGT
Statistics
Matches: 83, Mismatches: 8, Indels: 4
0.87 0.08 0.04
Matches are distributed among these distances:
45 2 0.02
46 79 0.95
47 2 0.02
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.28
Consensus pattern (45 bp):
TGTGAAACGTAGGTATGGTATTTCAGCAAGAAAACCATACTGAGT
Found at i:35412992 original size:90 final size:90
Alignment explanation
Indices: 35412893--35413096 Score: 266
Period size: 90 Copynumber: 2.3 Consensus size: 90
35412883 TTTTTTGCAT
* * * * * * * *
35412893 AGATCCAAAATTATTACGAACATTCTAGAAAATTGATATATGAAAATATAAAATTTGACCAATAA
1 AGATCCAAAAATAATACAAACATTCTACAAAACTGATATACGAAAATATAAAATTCGACCAACAA
35412958 AAAATACGGACTAAAATATTTTTAC
66 AAAATACGGACTAAAATATTTTTAC
*
35412983 AGATCCAAAAATAATACAAACATTTTACAAAACTGATATACGAAAATATAAAATTCGACCAACAA
1 AGATCCAAAAATAATACAAACATTCTACAAAACTGATATACGAAAATATAAAATTCGACCAACAA
* *
35413048 ATAATACGGACTAAAAT-TGATTTAC
66 AAAATACGGACTAAAATAT-TTTTAC
* * *
35413073 ATATACAAAAATAATACAACCATT
1 AGATCCAAAAATAATACAAACATT
35413097 TTGAATAGTA
Statistics
Matches: 99, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
89 1 0.01
90 98 0.99
ACGTcount: A:0.52, C:0.14, G:0.07, T:0.27
Consensus pattern (90 bp):
AGATCCAAAAATAATACAAACATTCTACAAAACTGATATACGAAAATATAAAATTCGACCAACAA
AAAATACGGACTAAAATATTTTTAC
Found at i:35413769 original size:54 final size:53
Alignment explanation
Indices: 35413569--35413771 Score: 171
Period size: 54 Copynumber: 3.8 Consensus size: 53
35413559 CTAGTATTGG
* *
35413569 GGTGCCGGCCATCAGTGTCTCAGCACCTCAAAATATATTTTTTAAATATGGTACTGA
1 GGTGCCGGCCATCAGTGTCTCAGCACC-C--AATAT-TTTTTAAAATTTGGTACTGA
* * * **
35413626 TGTGCCGGCCATCATTGTC-CTAGCACCCAAAATTTTTTAAAATTTTGGTACAAA
1 GGTGCCGGCCATCAGTGTCTC-AGCACCCAATATTTTTTAAAA-TTTGGTACTGA
*** * * * *
35413680 GGTGCCTATCATCAATGT-TCCAGTACCCCAAT-TTTTTTAAAATTTGATACTGG
1 GGTGCCGGCCATCAGTGTCT-CAGCA-CCCAATATTTTTTAAAATTTGGTACTGA
*
35413733 GGTGCCGGCCATCAGTGTCTTAGCACCCAAT-TTTTTTAA
1 GGTGCCGGCCATCAGTGTCTCAGCACCCAATATTTTTTAA
35413772 TTTTAAAATG
Statistics
Matches: 116, Mismatches: 24, Indels: 17
0.74 0.15 0.11
Matches are distributed among these distances:
52 14 0.12
53 32 0.28
54 39 0.34
55 6 0.05
56 2 0.02
57 23 0.20
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (53 bp):
GGTGCCGGCCATCAGTGTCTCAGCACCCAATATTTTTTAAAATTTGGTACTGA
Found at i:35413858 original size:43 final size:43
Alignment explanation
Indices: 35413811--35413898 Score: 158
Period size: 43 Copynumber: 2.0 Consensus size: 43
35413801 TCAGCACCCA
*
35413811 AAAAAAATTTATCTGGTAAAGGGGTGCCGGCCATCAGTGTGCT
1 AAAAAAATTTATCTGGTAAAGGGGTGCCGACCATCAGTGTGCT
*
35413854 AAAAAGATTTATCTGGTAAAGGGGTGCCGACCATCAGTGTGCT
1 AAAAAAATTTATCTGGTAAAGGGGTGCCGACCATCAGTGTGCT
35413897 AA
1 AA
35413899 CATCCCAAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.25
Consensus pattern (43 bp):
AAAAAAATTTATCTGGTAAAGGGGTGCCGACCATCAGTGTGCT
Found at i:35417603 original size:13 final size:13
Alignment explanation
Indices: 35417587--35417620 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
35417577 AAATTTAGAA
35417587 TTAAAATATTATG
1 TTAAAATATTATG
35417600 TTAAAATATTATG
1 TTAAAATATTATG
*
35417613 TTTAAATA
1 TTAAAATA
35417621 AATGAGCAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (13 bp):
TTAAAATATTATG
Found at i:35436046 original size:15 final size:15
Alignment explanation
Indices: 35436011--35436061 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
35436001 ACTAATAAAT
*
35436011 CTAAA-CCCTAAACC
1 CTAAACCCCTAACCC
* * *
35436025 CTTAACCCCTATCCT
1 CTAAACCCCTAACCC
*
35436040 CTAAACCCTTAACCC
1 CTAAACCCCTAACCC
35436055 CTAAACC
1 CTAAACC
35436062 TTAAACCCCA
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
14 4 0.14
15 24 0.86
ACGTcount: A:0.33, C:0.45, G:0.00, T:0.22
Consensus pattern (15 bp):
CTAAACCCCTAACCC
Found at i:35436066 original size:22 final size:22
Alignment explanation
Indices: 35436011--35436069 Score: 84
Period size: 22 Copynumber: 2.7 Consensus size: 22
35436001 ACTAATAAAT
*
35436011 CTAAACCCTAAACCCTTAACCC
1 CTAAACCTTAAACCCTTAACCC
*
35436033 CT-ATCCTCTAAACCCTTAACCC
1 CTAAACCT-TAAACCCTTAACCC
35436055 CTAAACCTTAAACCC
1 CTAAACCTTAAACCC
35436070 CAACTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 3 0.09
22 25 0.78
23 4 0.12
ACGTcount: A:0.34, C:0.44, G:0.00, T:0.22
Consensus pattern (22 bp):
CTAAACCTTAAACCCTTAACCC
Found at i:35436294 original size:21 final size:20
Alignment explanation
Indices: 35436270--35436325 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 20
35436260 TATCCCTTAC
35436270 ACCCTAAATCATAAACCCCTA
1 ACCCTAAATCATAAA-CCCTA
* *
35436291 ACCCCTAAACCTTAAACCCTA
1 A-CCCTAAATCATAAACCCTA
35436312 ACCCTTAAATCATA
1 ACCC-TAAATCATA
35436326 TATCATAATC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 3 0.10
21 14 0.48
22 12 0.41
ACGTcount: A:0.41, C:0.38, G:0.00, T:0.21
Consensus pattern (20 bp):
ACCCTAAATCATAAACCCTA
Found at i:35436349 original size:15 final size:15
Alignment explanation
Indices: 35436329--35436358 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
35436319 AATCATATAT
*
35436329 CATAATCCCTAAACC
1 CATAATCCATAAACC
35436344 CATAATCCATAAACC
1 CATAATCCATAAACC
35436359 TTAAGATAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.37, G:0.00, T:0.20
Consensus pattern (15 bp):
CATAATCCATAAACC
Found at i:35436611 original size:41 final size:41
Alignment explanation
Indices: 35436566--35436805 Score: 299
Period size: 41 Copynumber: 5.9 Consensus size: 41
35436556 AATGTTTTTT
*
35436566 GCGGCTCTTTTT-AAAAAGCGCCGCTAAAGCCCCGAGAATTA
1 GCGGCTCTTTTTCAAAAA-CGCCGCTAAAGCCCCGAGCATTA
* * * *
35436607 GCGGCGCTTTCTCAAAAACACCGCTAAAGCCCTGAGCATTA
1 GCGGCTCTTTTTCAAAAACGCCGCTAAAGCCCCGAGCATTA
* * *
35436648 GCGGCGCTTTTTCAGAAACGCCGCTAAAGCCCCGAGTATTA
1 GCGGCTCTTTTTCAAAAACGCCGCTAAAGCCCCGAGCATTA
* *
35436689 GCGGCACTTTTTCAGAAACGCCGCTAAAGCCCCGAGCATTA
1 GCGGCTCTTTTTCAAAAACGCCGCTAAAGCCCCGAGCATTA
* * *
35436730 GCGG-TGCCTTTTT-AGAAACGTCGCTAAAGCCTCGAGCATTA
1 GCGGCT--CTTTTTCAAAAACGCCGCTAAAGCCCCGAGCATTA
35436771 GCGG-TGCTTTTTCAAAAACGCCGCTAAAGCCCCGA
1 GCGGCT-CTTTTTCAAAAACGCCGCTAAAGCCCCGA
35436806 AAGGTCAAAA
Statistics
Matches: 176, Mismatches: 19, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
40 6 0.03
41 159 0.90
42 11 0.06
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.22
Consensus pattern (41 bp):
GCGGCTCTTTTTCAAAAACGCCGCTAAAGCCCCGAGCATTA
Found at i:35436713 original size:82 final size:81
Alignment explanation
Indices: 35436566--35436805 Score: 336
Period size: 82 Copynumber: 2.9 Consensus size: 81
35436556 AATGTTTTTT
* * * *
35436566 GCGGCTCTTTTTAAAAAGCGCCGCTAAAGCCCCGAGAATTAGCGGCGCTTTCTCAAAAACACCGC
1 GCGGCGCTTTTTAGAAA-CGCCGCTAAAGCCCCGAGAATTAGCGGCGCTTTTTCAAAAACGCCGC
*
35436631 TAAAGCCCTGAGCATTA
65 TAAAGCCCCGAGCATTA
* * *
35436648 GCGGCGCTTTTTCAGAAACGCCGCTAAAGCCCCGAGTATTAGCGGCACTTTTTCAGAAACGCCGC
1 GCGGCGCTTTTT-AGAAACGCCGCTAAAGCCCCGAGAATTAGCGGCGCTTTTTCAAAAACGCCGC
35436713 TAAAGCCCCGAGCATTA
65 TAAAGCCCCGAGCATTA
* * * * *
35436730 GCGGTGCCTTTTTAGAAACGTCGCTAAAGCCTCGAGCATTAGCGGTGCTTTTTCAAAAACGCCGC
1 GCGGCG-CTTTTTAGAAACGCCGCTAAAGCCCCGAGAATTAGCGGCGCTTTTTCAAAAACGCCGC
35436795 TAAAGCCCCGA
65 TAAAGCCCCGA
35436806 AAGGTCAAAA
Statistics
Matches: 141, Mismatches: 15, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
82 131 0.93
83 10 0.07
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.22
Consensus pattern (81 bp):
GCGGCGCTTTTTAGAAACGCCGCTAAAGCCCCGAGAATTAGCGGCGCTTTTTCAAAAACGCCGCT
AAAGCCCCGAGCATTA
Found at i:35436790 original size:123 final size:123
Alignment explanation
Indices: 35436566--35436805 Score: 342
Period size: 123 Copynumber: 2.0 Consensus size: 123
35436556 AATGTTTTTT
*
35436566 GCGGCTCTTTTTAAAAAGCGCCGCTAAAGCCCCGAGAATTAGCGGCGCTTTCTCAAAAACACCGC
1 GCGGCACTTTTTAAAAAGCGCCGCTAAAGCCCCGAGAATTAGCGGCGCTTTCTCAAAAACACCGC
*
35436631 TAAAGCCCTGAGCATTAGCGGCGCTTTTTCAGAAACGCCGCTAAAGCCCCGAGTATTA
66 TAAAGCCCTGAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCCGAGTATTA
* * * * * **
35436689 GCGGCACTTTTTCAGAAA-CGCCGCTAAAGCCCCGAGCATTAGCGGTGCCTTT-TTAGAAACGTC
1 GCGGCACTTTTT-AAAAAGCGCCGCTAAAGCCCCGAGAATTAGCGGCG-CTTTCTCAAAAACACC
*
35436752 GCTAAAG-CCTCGAGCATTAGCGGTGCTTTTTCAAAAACGCCGCTAAAGCCCCGA
64 GCTAAAGCCCT-GAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCCGA
35436806 AAGGTCAAAA
Statistics
Matches: 104, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
122 3 0.03
123 93 0.89
124 8 0.08
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.22
Consensus pattern (123 bp):
GCGGCACTTTTTAAAAAGCGCCGCTAAAGCCCCGAGAATTAGCGGCGCTTTCTCAAAAACACCGC
TAAAGCCCTGAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCCGAGTATTA
Found at i:35436935 original size:40 final size:40
Alignment explanation
Indices: 35436857--35436972 Score: 121
Period size: 40 Copynumber: 3.0 Consensus size: 40
35436847 CGGTTTTTGG
* * *
35436857 AAAAA-CGCCGCTAATGCTC-ATTTTCAACGGCGTGTTCC
1 AAAAAGCGCCGCAAATGCTCGATTTTCAGCGGCGTTTTCC
* *
35436895 AAAAAGTGCCGCAAATGCTTGATCTTT-AGCGGCGTTTTCC
1 AAAAAGCGCCGCAAATGCTCGAT-TTTCAGCGGCGTTTTCC
* * * *
35436935 ATAAAGCGCCTCTAATTCTCGATTTTCAGCGGCGTTTT
1 AAAAAGCGCCGCAAATGCTCGATTTTCAGCGGCGTTTT
35436973 TTATCCAAAC
Statistics
Matches: 63, Mismatches: 11, Indels: 6
0.79 0.14 0.08
Matches are distributed among these distances:
38 5 0.08
39 14 0.22
40 41 0.65
41 3 0.05
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (40 bp):
AAAAAGCGCCGCAAATGCTCGATTTTCAGCGGCGTTTTCC
Found at i:35439044 original size:31 final size:31
Alignment explanation
Indices: 35438976--35439052 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 31
35438966 CCATACTCCT
* *
35438976 ATGTGGCCCACACAGCCTAATTGGCCCAACCC
1 ATGTGGCCCACAC-GCCTAACTAGCCCAACCC
* *
35439008 ATGTGGCCCACACGCCTAACTAG-CCTAGCC
1 ATGTGGCCCACACGCCTAACTAGCCCAACCC
35439038 AGTGTGGCCCACACG
1 A-TGTGGCCCACACG
35439053 GCCTGTGACG
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
30 6 0.15
31 21 0.52
32 13 0.32
ACGTcount: A:0.23, C:0.39, G:0.22, T:0.16
Consensus pattern (31 bp):
ATGTGGCCCACACGCCTAACTAGCCCAACCC
Found at i:35443797 original size:24 final size:25
Alignment explanation
Indices: 35443770--35443816 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
35443760 ACTGGTCATA
*
35443770 GAGAGAATTGAGGGGAG-ATATTTG
1 GAGAGAATTGAGGAGAGAATATTTG
*
35443794 GAGAGATTTGAGGAGAGAATATT
1 GAGAGAATTGAGGAGAGAATATT
35443817 AGGATTTGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.36, C:0.00, G:0.38, T:0.26
Consensus pattern (25 bp):
GAGAGAATTGAGGAGAGAATATTTG
Found at i:35444835 original size:27 final size:27
Alignment explanation
Indices: 35444502--35444822 Score: 371
Period size: 27 Copynumber: 11.9 Consensus size: 27
35444492 AGCTGCACCA
*
35444502 AAATACCCCTATAAGGTAAAATGACCG
1 AAATACCCCTATAGGGTAAAATGACCG
* *
35444529 AAATACCCCTATAGGGTAAAATAACTG
1 AAATACCCCTATAGGGTAAAATGACCG
* *
35444556 AAATA-CTCTCATAGGGTAGAATGACCG
1 AAATACCCCT-ATAGGGTAAAATGACCG
* *
35444583 AAATACCCCTATAGGGTAAAGTAACCG
1 AAATACCCCTATAGGGTAAAATGACCG
* *
35444610 AAATACCCCCATAGGATAAAATGACCG
1 AAATACCCCTATAGGGTAAAATGACCG
* *
35444637 AAATACCTCC-ATATGGTAGAATGACCG
1 AAATACC-CCTATAGGGTAAAATGACCG
*
35444664 AAATACCCCTATAGGGTAAAATGATCG
1 AAATACCCCTATAGGGTAAAATGACCG
* * * *
35444691 AAATA-CCCTCAAAAGGTAGAATGATCG
1 AAATACCCCT-ATAGGGTAAAATGACCG
* **
35444718 AAATA-CCCTATAGGGTAGAATGACTA
1 AAATACCCCTATAGGGTAAAATGACCG
* * *
35444744 AAATACCCTTATAGGGTAGAATGACCA
1 AAATACCCCTATAGGGTAAAATGACCG
* *
35444771 AAATACCCCCATAGGGTAAAATGATCG
1 AAATACCCCTATAGGGTAAAATGACCG
35444798 AAATACCCCTATAGGGTAAAATGAC
1 AAATACCCCTATAGGGTAAAATGAC
35444823 TGTTATACCC
Statistics
Matches: 250, Mismatches: 38, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
26 26 0.10
27 219 0.88
28 5 0.02
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.20
Consensus pattern (27 bp):
AAATACCCCTATAGGGTAAAATGACCG
Found at i:35447796 original size:27 final size:27
Alignment explanation
Indices: 35447754--35448018 Score: 322
Period size: 27 Copynumber: 9.9 Consensus size: 27
35447744 ACCTGCAGTA
*
35447754 AAATACCC-CATAGGGTAAAATGACTG
1 AAATACCCTCATAGGGTAAAATGACCG
*
35447780 AAATACCCTCATAGGGTAGAATGACCG
1 AAATACCCTCATAGGGTAAAATGACCG
* *
35447807 AAATATCCC-CATAGGGTAGAATGACCA
1 AAATA-CCCTCATAGGGTAAAATGACCG
* *
35447834 AAATACCCCCATAGGGTAAAATGGCCG
1 AAATACCCTCATAGGGTAAAATGACCG
* *
35447861 AAATACCCTCATAGGGTAGAATAACCG
1 AAATACCCTCATAGGGTAAAATGACCG
*
35447888 AAATACCCTCATAGGGTAAAATGACCC
1 AAATACCCTCATAGGGTAAAATGACCG
* * * *
35447915 AAATACCCCCATAAGGTAGAATGACTG
1 AAATACCCTCATAGGGTAAAATGACCG
* *
35447942 AAATACCCCCATAGGGT-AAATGACCA
1 AAATACCCTCATAGGGTAAAATGACCG
* *
35447968 AAATACCCTCATAAGGTAAAATGATCG
1 AAATACCCTCATAGGGTAAAATGACCG
*
35447995 AAATACCC-CTATAAGGTAAAATGA
1 AAATACCCTC-ATAGGGTAAAATGA
35448019 TTGTTATACC
Statistics
Matches: 208, Mismatches: 26, Indels: 9
0.86 0.11 0.04
Matches are distributed among these distances:
26 33 0.16
27 172 0.83
28 3 0.01
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.18
Consensus pattern (27 bp):
AAATACCCTCATAGGGTAAAATGACCG
Found at i:35447888 original size:81 final size:81
Alignment explanation
Indices: 35447753--35448018 Score: 376
Period size: 81 Copynumber: 3.3 Consensus size: 81
35447743 TACCTGCAGT
*
35447753 AAAATA-CCCCATAGGGTAAAATGACTGAAATACCCTCATAGGGTAGAATGACCGAAATATCCC-
1 AAAATACCCCCATAAGGTAAAATGACTGAAATACCCTCATAGGGTAGAATGACCGAAATA-CCCT
*
35447816 CATAGGGTAGAATGACC
65 CATAGGGTAAAATGACC
* * * *
35447833 AAAATACCCCCATAGGGTAAAATGGCCGAAATACCCTCATAGGGTAGAATAACCGAAATACCCTC
1 AAAATACCCCCATAAGGTAAAATGACTGAAATACCCTCATAGGGTAGAATGACCGAAATACCCTC
35447898 ATAGGGTAAAATGACC
66 ATAGGGTAAAATGACC
* * * *
35447914 CAAATACCCCCATAAGGTAGAATGACTGAAATACCCCCATAGGGTA-AATGACCAAAATACCCTC
1 AAAATACCCCCATAAGGTAAAATGACTGAAATACCCTCATAGGGTAGAATGACCGAAATACCCTC
* *
35447978 ATAAGGTAAAATGATC
66 ATAGGGTAAAATGACC
* *
35447994 GAAATACCCCTATAAGGTAAAATGA
1 AAAATACCCCCATAAGGTAAAATGA
35448019 TTGTTATACC
Statistics
Matches: 167, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
80 61 0.37
81 106 0.63
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.18
Consensus pattern (81 bp):
AAAATACCCCCATAAGGTAAAATGACTGAAATACCCTCATAGGGTAGAATGACCGAAATACCCTC
ATAGGGTAAAATGACC
Found at i:35449480 original size:56 final size:56
Alignment explanation
Indices: 35449419--35449530 Score: 206
Period size: 56 Copynumber: 2.0 Consensus size: 56
35449409 TCATACTATA
*
35449419 TTCAACTTACACATGCTATTATATTTCATTTGTTTCACAAATATCCCAATTCTCAT
1 TTCAACTTACACATGCTATCATATTTCATTTGTTTCACAAATATCCCAATTCTCAT
*
35449475 TTCAACTTACATATGCTATCATATTTCATTTGTTTCACAAATATCCCAATTCTCAT
1 TTCAACTTACACATGCTATCATATTTCATTTGTTTCACAAATATCCCAATTCTCAT
35449531 ACTTGTTATA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.30, C:0.23, G:0.04, T:0.43
Consensus pattern (56 bp):
TTCAACTTACACATGCTATCATATTTCATTTGTTTCACAAATATCCCAATTCTCAT
Found at i:35454262 original size:40 final size:40
Alignment explanation
Indices: 35454214--35454354 Score: 203
Period size: 40 Copynumber: 3.5 Consensus size: 40
35454204 TGTTATACTC
* *
35454214 TCTGTCTGGTGTGTTTCGATTGGATTAGCTTTTATGAGCT
1 TCTGTCTGGTGTGTTTCGATTGGATTACCTCTTATGAGCT
* * * * *
35454254 TTTATCTGGCGTGTTTCGGTTGGATTACCTGTTATGAGCT
1 TCTGTCTGGTGTGTTTCGATTGGATTACCTCTTATGAGCT
*
35454294 TCTGTCTAGTGTGTTTCGATTGGATTACCTCTTATGAGCT
1 TCTGTCTGGTGTGTTTCGATTGGATTACCTCTTATGAGCT
35454334 TCTGTCTGGTGTG-TTCGATTG
1 TCTGTCTGGTGTGTTTCGATTG
35454355 ATCTGACGAT
Statistics
Matches: 88, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 8 0.09
40 80 0.91
ACGTcount: A:0.12, C:0.15, G:0.27, T:0.46
Consensus pattern (40 bp):
TCTGTCTGGTGTGTTTCGATTGGATTACCTCTTATGAGCT
Found at i:35460204 original size:22 final size:22
Alignment explanation
Indices: 35460178--35460224 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
35460168 CCCTAATATT
35460178 TTAACATTTT-ACACTTTAGTCC
1 TTAACATTTTAACACTTTA-TCC
35460200 TTAACATTTTAAACACTTTATCC
1 TTAACATTTT-AACACTTTATCC
35460223 TT
1 TT
35460225 TTTACAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 10 0.43
23 5 0.22
24 8 0.35
ACGTcount: A:0.30, C:0.21, G:0.02, T:0.47
Consensus pattern (22 bp):
TTAACATTTTAACACTTTATCC
Found at i:35464225 original size:24 final size:24
Alignment explanation
Indices: 35464197--35464253 Score: 105
Period size: 24 Copynumber: 2.4 Consensus size: 24
35464187 TAGCGTACGC
35464197 CGGAGCATAAATTGGAGGATATGT
1 CGGAGCATAAATTGGAGGATATGT
*
35464221 CGGAGCATAAATTGGATGATATGT
1 CGGAGCATAAATTGGAGGATATGT
35464245 CGGAGCATA
1 CGGAGCATA
35464254 TGTTTCGACA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.33, C:0.11, G:0.32, T:0.25
Consensus pattern (24 bp):
CGGAGCATAAATTGGAGGATATGT
Found at i:35475676 original size:42 final size:42
Alignment explanation
Indices: 35475617--35475702 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
35475607 TAAAAAAGAA
35475617 AGGTTTTGATACTCCGAAGTTTTATGCAGATGGAACTTTGGG
1 AGGTTTTGATACTCCGAAGTTTTATGCAGATGGAACTTTGGG
35475659 AGGTTTTGATACTCCGAAGTTTTATGCAGATGGAACTTTGGG
1 AGGTTTTGATACTCCGAAGTTTTATGCAGATGGAACTTTGGG
35475701 AG
1 AG
35475703 TCCTACAGGG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.24, C:0.12, G:0.29, T:0.35
Consensus pattern (42 bp):
AGGTTTTGATACTCCGAAGTTTTATGCAGATGGAACTTTGGG
Found at i:35479147 original size:5 final size:5
Alignment explanation
Indices: 35479137--35479162 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
35479127 AGCTATATGG
35479137 TCACC TCACC TCACC TCACC TCACC T
1 TCACC TCACC TCACC TCACC TCACC T
35479163 GCAAGTGCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.58, G:0.00, T:0.23
Consensus pattern (5 bp):
TCACC
Found at i:35481596 original size:20 final size:19
Alignment explanation
Indices: 35481542--35481826 Score: 141
Period size: 19 Copynumber: 14.5 Consensus size: 19
35481532 CAAAATATTG
*
35481542 TAAAAATTTATAAAAGAATAT
1 TAAAAA-TTGTAAAA-AATAT
* *
35481563 TAAAAATCGTAAAATATA-
1 TAAAAATTGTAAAAAATAT
*
35481581 TATAAATTGTAAAAAATAT
1 TAAAAATTGTAAAAAATAT
* * *
35481600 T-TAAATTATTAAAAAATGT
1 TAAAAATT-GTAAAAAATAT
*
35481619 TAAAAATT-TAAAAAAACATT
1 TAAAAATTGT-AAAAAATA-T
35481639 TAAAAATTGT-AAAAA-AT
1 TAAAAATTGTAAAAAATAT
** * *
35481656 TAATTATTGTAATAATTAT
1 TAAAAATTGTAAAAAATAT
* *
35481675 TAAATATTGTTAAAAATATT
1 TAAAAATTGTAAAAAATA-T
* **
35481695 TTAATGTTGTAAAAAAAGTTAT
1 TAAAAATTGT-AAAAAA--TAT
* **
35481717 TAAAAATTATAAAACCTTAT
1 TAAAAATTGTAAAA-AATAT
* *
35481737 CTAAAATTTGTAAAAATTAT
1 -TAAAAATTGTAAAAAATAT
***
35481757 TAAAAATTGGGGAAAATAT
1 TAAAAATTGTAAAAAATAT
* *
35481776 TAAAAA-TGCAAATAATTAT
1 TAAAAATTGTAAA-AAATAT
*
35481795 TAAAAAATTGTAAATAATGAT
1 T-AAAAATTGTAAAAAAT-AT
35481816 TAAAAAATTGT
1 T-AAAAATTGT
35481827 GAATTGATGG
Statistics
Matches: 203, Mismatches: 43, Indels: 36
0.72 0.15 0.13
Matches are distributed among these distances:
17 9 0.04
18 29 0.14
19 67 0.33
20 43 0.21
21 46 0.23
22 7 0.03
23 2 0.01
ACGTcount: A:0.55, C:0.02, G:0.07, T:0.36
Consensus pattern (19 bp):
TAAAAATTGTAAAAAATAT
Found at i:35481612 original size:19 final size:18
Alignment explanation
Indices: 35481552--35481616 Score: 58
Period size: 18 Copynumber: 3.4 Consensus size: 18
35481542 TAAAAATTTA
* *
35481552 TAAAAGAATATTAAAAATCG
1 TAAAA-AATA-TATAAATTG
*
35481572 TAAAATATATATAAATTG
1 TAAAAAATATATAAATTG
* *
35481590 TAAAAAATATTTAAATTAT
1 TAAAAAATATATAAATT-G
35481609 TAAAAAAT
1 TAAAAAAT
35481617 GTTAAAAATT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
18 22 0.58
19 11 0.29
20 5 0.13
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.34
Consensus pattern (18 bp):
TAAAAAATATATAAATTG
Found at i:35481629 original size:18 final size:18
Alignment explanation
Indices: 35481542--35481710 Score: 74
Period size: 20 Copynumber: 8.9 Consensus size: 18
35481532 CAAAATATTG
*
35481542 TAAAAATTTATAAAAGAATAT
1 TAAAAA-TTGTAAAA-AAT-T
* * *
35481563 TAAAAATCGTAAAATATA
1 TAAAAATTGTAAAAAATT
*
35481581 TATAAATTGTAAAAAATAT
1 TAAAAATTGTAAAAAAT-T
* *
35481600 T-TAAATTATTAAAAAATGT
1 TAAAAATT-GTAAAAAAT-T
35481619 TAAAAATT-TAAAAAAACATT
1 TAAAAATTGT--AAAAA-ATT
35481639 TAAAAATTGTAAAAAA-T
1 TAAAAATTGTAAAAAATT
** * *
35481656 TAATTATTGTAATAATTAT
1 TAAAAATTGTAAAAAAT-T
*
35481675 TAAATATTGTTAAAAATATT
1 TAAAAATTG-TAAAAA-ATT
* **
35481695 TTAATGTTGTAAAAAA
1 TAAAAATTGTAAAAAA
35481711 AGTTATTAAA
Statistics
Matches: 117, Mismatches: 20, Indels: 25
0.72 0.12 0.15
Matches are distributed among these distances:
17 13 0.11
18 23 0.20
19 33 0.28
20 38 0.32
21 10 0.09
ACGTcount: A:0.56, C:0.01, G:0.05, T:0.37
Consensus pattern (18 bp):
TAAAAATTGTAAAAAATT
Found at i:35481726 original size:10 final size:10
Alignment explanation
Indices: 35481707--35481764 Score: 50
Period size: 10 Copynumber: 5.7 Consensus size: 10
35481697 AATGTTGTAA
35481707 AAAAAGTTATT
1 AAAAA-TTATT
35481718 AAAAATTA-T
1 AAAAATTATT
*
35481727 AAAACCTTATCT
1 AAAA-ATTAT-T
35481739 -AAAATT-TGT
1 AAAAATTAT-T
35481748 AAAAATTATT
1 AAAAATTATT
35481758 AAAAATT
1 AAAAATT
35481765 GGGGAAAATA
Statistics
Matches: 39, Mismatches: 3, Indels: 11
0.74 0.06 0.21
Matches are distributed among these distances:
9 7 0.18
10 22 0.56
11 9 0.23
12 1 0.03
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.36
Consensus pattern (10 bp):
AAAAATTATT
Found at i:35481809 original size:21 final size:19
Alignment explanation
Indices: 35481560--35481826 Score: 120
Period size: 20 Copynumber: 13.7 Consensus size: 19
35481550 TATAAAAGAA
*
35481560 TATTAAAAATCGT-AAAA-
1 TATTAAAAATTGTAAAAAT
* *
35481577 TATATATAAATTGTAAAAAA
1 TAT-TAAAAATTGTAAAAAT
* * *
35481597 TATT-TAAATTATTAAAAAA
1 TATTAAAAATT-GTAAAAAT
* *
35481616 TGTTAAAAATT-TAAAAAAA
1 TATTAAAAATTGT-AAAAAT
*
35481635 CATTTAAAAATTGTAAAAA-
1 TA-TTAAAAATTGTAAAAAT
** *
35481654 -ATTAATTATTGTAATAAT
1 TATTAAAAATTGTAAAAAT
*
35481672 TATTAAATATTGTTAAAAA-
1 TATTAAAAATTG-TAAAAAT
* **
35481691 TATTTTAATGTTGTAAAAAAAGT
1 TA-TTAAAAATTGT--AAAAA-T
* *
35481714 TATTAAAAATTATAAAACCT
1 TATTAAAAATTGTAAAA-AT
*
35481734 TATCTAAAATTTGTAAAAAT
1 TAT-TAAAAATTGTAAAAAT
**
35481754 TATTAAAAATTGGGGAAAA-
1 TATTAAAAATT-GTAAAAAT
*
35481773 TATTAAAAA-TGCAAATAAT
1 TATTAAAAATTGTAAA-AAT
35481792 TATTAAAAAATTGTAAATAAT
1 TATT-AAAAATTGTAAA-AAT
*
35481813 GATTAAAAAATTGT
1 TATT-AAAAATTGT
35481827 GAATTGATGG
Statistics
Matches: 198, Mismatches: 29, Indels: 42
0.74 0.11 0.16
Matches are distributed among these distances:
17 19 0.10
18 19 0.10
19 54 0.27
20 57 0.29
21 40 0.20
22 7 0.04
23 2 0.01
ACGTcount: A:0.54, C:0.02, G:0.07, T:0.37
Consensus pattern (19 bp):
TATTAAAAATTGTAAAAAT
Found at i:35481982 original size:3 final size:3
Alignment explanation
Indices: 35481974--35482003 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
35481964 ATGACAACAT
*
35481974 AGA AGA AGA AGA AGG AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
35482004 TTTGTTAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:35482117 original size:20 final size:18
Alignment explanation
Indices: 35482015--35482133 Score: 80
Period size: 20 Copynumber: 6.2 Consensus size: 18
35482005 TTGTTAATTA
35482015 TTTACAATTTTTAATAAATT
1 TTTACAATTTTTAAT--ATT
** *
35482035 TTTATTATTTTTAACAACTTT
1 TTTACAATTTTTAA-TA--TT
* *
35482056 TTTAGAATTTTGAAATATT
1 TTTACAATTTT-TAATATT
**
35482075 TTTAACAACATTTAAT-TT
1 TTT-ACAATTTTTAATATT
35482093 TTTACAATTTTTAAATATAT
1 TTTACAATTTTT-AATAT-T
35482113 TTTAC-ATTTTTAATATT
1 TTTACAATTTTTAATATT
35482130 TTTA
1 TTTA
35482134 ATATTTTATT
Statistics
Matches: 78, Mismatches: 13, Indels: 19
0.71 0.12 0.17
Matches are distributed among these distances:
17 12 0.15
18 13 0.17
19 16 0.21
20 23 0.29
21 12 0.15
22 2 0.03
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.57
Consensus pattern (18 bp):
TTTACAATTTTTAATATT
Found at i:35482134 original size:9 final size:9
Alignment explanation
Indices: 35482085--35482140 Score: 55
Period size: 9 Copynumber: 6.2 Consensus size: 9
35482075 TTTAACAACA
35482085 TTTAAT-TT
1 TTTAATATT
35482093 TTTACA-ATT
1 TTTA-ATATT
35482102 TTTAAATATAT
1 TTT-AATAT-T
*
35482113 TTT-ACATT
1 TTTAATATT
35482121 TTTAATATT
1 TTTAATATT
35482130 TTTAATATT
1 TTTAATATT
35482139 TT
1 TT
35482141 ATTATAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
8 8 0.20
9 25 0.62
10 3 0.08
11 4 0.10
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (9 bp):
TTTAATATT
Found at i:35482769 original size:2 final size:2
Alignment explanation
Indices: 35482764--35482788 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
35482754 ATATATATAT
35482764 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
35482789 AATCCTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:35489067 original size:14 final size:14
Alignment explanation
Indices: 35489047--35489079 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
35489037 AGGGTGTACG
35489047 AGTGTAAAATAAGA
1 AGTGTAAAATAAGA
*
35489061 TGTGTAAAATAAGA
1 AGTGTAAAATAAGA
35489075 AGTGT
1 AGTGT
35489080 GCATTGCATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.24, T:0.27
Consensus pattern (14 bp):
AGTGTAAAATAAGA
Found at i:35496876 original size:9 final size:9
Alignment explanation
Indices: 35496862--35496895 Score: 68
Period size: 9 Copynumber: 3.8 Consensus size: 9
35496852 AAATAACTTG
35496862 TTTTCCTCA
1 TTTTCCTCA
35496871 TTTTCCTCA
1 TTTTCCTCA
35496880 TTTTCCTCA
1 TTTTCCTCA
35496889 TTTTCCT
1 TTTTCCT
35496896 GTAAGATTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.09, C:0.32, G:0.00, T:0.59
Consensus pattern (9 bp):
TTTTCCTCA
Done.