Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43060996
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2186021 characters in sequence are not A, C, G, or T
File 106 of 128
Found at i:35497952 original size:10 final size:10
Alignment explanation
Indices: 35497937--35497971 Score: 56
Period size: 9 Copynumber: 3.7 Consensus size: 10
35497927 AGCTGCTTGA
35497937 CCTCCCCCCC
1 CCTCCCCCCC
35497947 CCT-CCCCCC
1 CCTCCCCCCC
35497956 CC-CCCCCCC
1 CCTCCCCCCC
35497965 CCTCCCC
1 CCTCCCC
35497972 TCAAAATCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
9 16 0.70
10 7 0.30
ACGTcount: A:0.00, C:0.91, G:0.00, T:0.09
Consensus pattern (10 bp):
CCTCCCCCCC
Found at i:35508799 original size:33 final size:34
Alignment explanation
Indices: 35508707--35508800 Score: 81
Period size: 32 Copynumber: 2.9 Consensus size: 34
35508697 TTTTTACTAG
**
35508707 CATTTTTTTT-ATTTTTAATGGTTGA-TTTTAGGT
1 CATTTTTTTTAATTTTTAATTATTGATTTTTA-GT
* * **
35508740 -TTTTTTTTTCAATTTGTGCTTA-TGATTTTTA-T
1 CATTTTTTTT-AATTTTTAATTATTGATTTTTAGT
35508772 CATTTTTTTTAATTTTTAATTATTGATTT
1 CATTTTTTTTAATTTTTAATTATTGATTT
35508801 AAGAATTTTC
Statistics
Matches: 46, Mismatches: 10, Indels: 10
0.70 0.15 0.15
Matches are distributed among these distances:
32 18 0.39
33 17 0.37
34 11 0.24
ACGTcount: A:0.19, C:0.04, G:0.10, T:0.67
Consensus pattern (34 bp):
CATTTTTTTTAATTTTTAATTATTGATTTTTAGT
Found at i:35510013 original size:105 final size:101
Alignment explanation
Indices: 35509904--35510098 Score: 257
Period size: 105 Copynumber: 1.9 Consensus size: 101
35509894 ATTTGTAGTA
* *
35509904 CCATAACCCAGTTATGGTCTTATAATCAAAATGCCATAGCCCAGCTATGGTCTTACACATGT-AT
1 CCATAACCCAGTTATGGTCTTATAATCAAAATGCCATAGCCCAGCTATGATCTT--ACATGTAAA
35509968 CTATACTGCCATGGTCCAACCATGGTCTTAAGTTTAAGGTG
64 C-AT--TGCCATGGTCCAACCATGGTCTTAAGTTTAAGGTG
* * * * * * *
35510009 CCATAACCCAGTTATGGTCTTTTCATTAAAATGCCATTGCCTAGTTATGATCTTACATTTAAACA
1 CCATAACCCAGTTATGGTCTTATAATCAAAATGCCATAGCCCAGCTATGATCTTACATGTAAACA
35510074 TTGCCATGGTCCAACCATGGTCTTA
66 TTGCCATGGTCCAACCATGGTCTTA
35510099 TCCGTCAATT
Statistics
Matches: 80, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
101 24 0.30
103 7 0.09
104 2 0.03
105 47 0.59
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (101 bp):
CCATAACCCAGTTATGGTCTTATAATCAAAATGCCATAGCCCAGCTATGATCTTACATGTAAACA
TTGCCATGGTCCAACCATGGTCTTAAGTTTAAGGTG
Found at i:35528401 original size:21 final size:22
Alignment explanation
Indices: 35528372--35528413 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
35528362 GATTTGAATT
* *
35528372 AATTTGTTTGTATTGA-TTAAA
1 AATTAGTTTGAATTGACTTAAA
35528393 AATTAGTTTGAATTGACTTAA
1 AATTAGTTTGAATTGACTTAA
35528414 TTTTATGAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.36, C:0.02, G:0.14, T:0.48
Consensus pattern (22 bp):
AATTAGTTTGAATTGACTTAAA
Found at i:35533764 original size:32 final size:32
Alignment explanation
Indices: 35533728--35533791 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
35533718 CATGAAACAA
*
35533728 ATGATTTTTATTTTAAATTTTTTACTTATATT
1 ATGATTTTTATTTTAAAATTTTTACTTATATT
35533760 ATGATTTTTATTTTAAAATTTTTACTTATATT
1 ATGATTTTTATTTTAAAATTTTTACTTATATT
35533792 GGCACTCAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (32 bp):
ATGATTTTTATTTTAAAATTTTTACTTATATT
Found at i:35535306 original size:41 final size:41
Alignment explanation
Indices: 35535256--35535363 Score: 164
Period size: 41 Copynumber: 2.6 Consensus size: 41
35535246 CACCAGCACG
35535256 AAGCCTGCTAGACAATAAGTCTGAAATAATTCACCGGCATC
1 AAGCCTGCTAGACAATAAGTCTGAAATAATTCACCGGCATC
* *
35535297 AAGCTTGCTAGAC-ATAAAGTCTGAAGTAATTCACCGGCATC
1 AAGCCTGCTAGACAAT-AAGTCTGAAATAATTCACCGGCATC
* *
35535338 AAGCCTGCTAGACATTAAGCCTGAAA
1 AAGCCTGCTAGACAATAAGTCTGAAA
35535364 ACCAATTATA
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
40 2 0.03
41 56 0.95
42 1 0.02
ACGTcount: A:0.36, C:0.23, G:0.19, T:0.22
Consensus pattern (41 bp):
AAGCCTGCTAGACAATAAGTCTGAAATAATTCACCGGCATC
Found at i:35536754 original size:13 final size:13
Alignment explanation
Indices: 35536736--35536760 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35536726 TCAAACTATC
35536736 AAATTTTCACACG
1 AAATTTTCACACG
35536749 AAATTTTCACAC
1 AAATTTTCACAC
35536761 ATATAACTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:35542547 original size:62 final size:59
Alignment explanation
Indices: 35542470--35542617 Score: 194
Period size: 57 Copynumber: 2.5 Consensus size: 59
35542460 AATTGACAGT
35542470 AAAAATGATCTAGCCCGGACGGGTGATCCTATCCTGATATAGCCCTCCCGAAGAATATGTGTG
1 AAAAA-GATCTAGCCCGGACGGGTGATCCTAT--TGATATAGCCCTCCCGAAGAATATGTG-G
35542533 AAAAAGATCTAGCCCGGACGGGTGA---TATTGATATAGCCCTCCCGAAGAATATGTGG
1 AAAAAGATCTAGCCCGGACGGGTGATCCTATTGATATAGCCCTCCCGAAGAATATGTGG
* * * *
35542589 AAAATTGATTTAGTCCGGACGGGTAATCC
1 AAAA-AGATCTAGCCCGGACGGGTGATCC
35542618 GAATTAGGGT
Statistics
Matches: 77, Mismatches: 4, Indels: 11
0.84 0.04 0.12
Matches are distributed among these distances:
56 5 0.06
57 44 0.57
59 3 0.04
62 20 0.26
63 5 0.06
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (59 bp):
AAAAAGATCTAGCCCGGACGGGTGATCCTATTGATATAGCCCTCCCGAAGAATATGTGG
Found at i:35544317 original size:72 final size:72
Alignment explanation
Indices: 35544167--35544318 Score: 168
Period size: 72 Copynumber: 2.1 Consensus size: 72
35544157 TTATAATTAA
* * *
35544167 AATTAATTAATTTAACATTATTATTGTCATTATTATTTTCCTTTTTTTATTTATTTACTTACTAT
1 AATTAATTAATTTAACATTATTATTGTCATTATTATTTTCCTTTTTATATTTATTTACTAAATAT
***
35544232 TTTATTT
66 TTTAAAC
* *
35544239 AATTAATTAGTTTCACATTATTATT-TC--TATTATATTT-CTTTTTATATTTATTTACCTAAAT
1 AATTAATTAATTTAACATTATTATTGTCATTATTAT-TTTCCTTTTTATATTTATTTA-CTAAAT
35544300 ATTTTAAAC
64 ATTTTAAAC
35544309 ACATTTAATT
1 A-A-TTAATT
35544319 TATTATATTG
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
69 22 0.32
70 14 0.21
71 3 0.04
72 29 0.43
ACGTcount: A:0.31, C:0.09, G:0.01, T:0.59
Consensus pattern (72 bp):
AATTAATTAATTTAACATTATTATTGTCATTATTATTTTCCTTTTTATATTTATTTACTAAATAT
TTTAAAC
Found at i:35544342 original size:18 final size:17
Alignment explanation
Indices: 35544316--35544358 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
35544306 AACACATTTA
35544316 ATTTATTATAT-TGTTTT
1 ATTTATTATATCT-TTTT
35544333 ATTTATTTATATCTTTTT
1 ATTTA-TTATATCTTTTT
35544351 ATTT-TTAT
1 ATTTATTAT
35544359 TTTTTAAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 4 0.17
17 5 0.21
18 14 0.58
19 1 0.04
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.72
Consensus pattern (17 bp):
ATTTATTATATCTTTTT
Found at i:35559465 original size:11 final size:11
Alignment explanation
Indices: 35559445--35559501 Score: 53
Period size: 11 Copynumber: 4.9 Consensus size: 11
35559435 GTTTCATAAA
35559445 AAAAAGAAAAG
1 AAAAAGAAAAG
*
35559456 AAAAATAAAAG
1 AAAAAGAAAAG
35559467 AAAGGAA-AAAATG
1 AAA--AAGAAAA-G
35559480 AAAAAAGAAAAG
1 -AAAAAGAAAAG
*
35559492 AAAAATAAAA
1 AAAAAGAAAA
35559502 AGAGAGGCCA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
11 22 0.56
12 7 0.18
13 7 0.18
14 3 0.08
ACGTcount: A:0.81, C:0.00, G:0.14, T:0.05
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:35559465 original size:16 final size:16
Alignment explanation
Indices: 35559442--35559501 Score: 68
Period size: 16 Copynumber: 3.6 Consensus size: 16
35559432 AATGTTTCAT
35559442 AAAA-AAAAGAAAAGA
1 AAAATAAAAGAAAAGA
*
35559457 AAAATAAAAGAAAGGAA
1 AAAATAAAAGAAAAG-A
35559474 AAAATGAAAAAAGAAAAGA
1 AAAAT---AAAAGAAAAGA
35559493 AAAATAAAA
1 AAAATAAAA
35559502 AGAGAGGCCA
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
15 4 0.11
16 13 0.34
17 6 0.16
19 6 0.16
20 9 0.24
ACGTcount: A:0.82, C:0.00, G:0.13, T:0.05
Consensus pattern (16 bp):
AAAATAAAAGAAAAGA
Found at i:35559465 original size:20 final size:20
Alignment explanation
Indices: 35559440--35559502 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 20
35559430 AAAATGTTTC
35559440 ATAAAAAAAAGAAAAGAAAA
1 ATAAAAAAAAGAAAAGAAAA
* *
35559460 ATAAAAGAAAG--GA-AAAA
1 ATAAAAAAAAGAAAAGAAAA
*
35559477 AT-GAAAAAAGAAAAGAAAA
1 ATAAAAAAAAGAAAAGAAAA
35559496 ATAAAAA
1 ATAAAAA
35559503 GAGAGGCCAA
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
16 6 0.18
17 6 0.18
18 2 0.06
19 6 0.18
20 13 0.39
ACGTcount: A:0.81, C:0.00, G:0.13, T:0.06
Consensus pattern (20 bp):
ATAAAAAAAAGAAAAGAAAA
Found at i:35560826 original size:274 final size:274
Alignment explanation
Indices: 35560361--35561041 Score: 1103
Period size: 274 Copynumber: 2.5 Consensus size: 274
35560351 TGGGTTGGAT
* *
35560361 TGAAGTTAGCGAATCTTATTTCCCTAAAGTTACATTGGAACAAATTAAAGCTACAAATTACAGAT
1 TGAAGATAGCGAATCTTATTTCCCTAAAGTTACATTGGAACAGATTAAAGCTACAAATTACAGAT
*
35560426 CTTATCTCTCTGAAGTTGCAATAGGGCAGATCATAGTAATCCTATCTCCCTGAAGTTGCAGTGGA
66 CTTATCTCTCTGAAGTTGCAATAGAGCAGATCATAGTAATCCTATCTCCCTGAAGTTGCAGTGGA
* *
35560491 GCGGATTAAAACTAGAAATCCTATACCTCTGAGTTTGCAGTAGGTCAGATTAAATCTATCATAGC
131 GCGGATTAAAACTAGAAATCCTATACCTCTGAGGTTGCAGTAGGTCAGATTAAATCTATCATAGA
* * * *
35560556 AAACATTATCTCCCTGAAGTTGTAGTGGAGTATGTTGAAGTTACCAGACTTATCTCCTTGAAGTT
196 AAACATTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACAAGACTTATCTCCCTGAAGTT
35560621 GCAGCGGAGCAGAC
261 GCAGCGGAGCAGAC
* *
35560635 TGAAGATAGTGAATCTTATTTCCCTAAAGTTACATTGGAATAGATTAAAGCTACAAATTACAGAT
1 TGAAGATAGCGAATCTTATTTCCCTAAAGTTACATTGGAACAGATTAAAGCTACAAATTACAGAT
*
35560700 CTTATCTCTCTGAAGTTGCAATAGAGCAGATCATAGTAATCCTATCTCCCTGAAGTTGCAATGGA
66 CTTATCTCTCTGAAGTTGCAATAGAGCAGATCATAGTAATCCTATCTCCCTGAAGTTGCAGTGGA
*
35560765 GCGGATTAAAACTAGAAATCTTATACCTCTGAGGTTGCAGTAGGTCAGATTAAATCTATCATAGA
131 GCGGATTAAAACTAGAAATCCTATACCTCTGAGGTTGCAGTAGGTCAGATTAAATCTATCATAGA
*
35560830 AAACATTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTT
196 AAACATTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACAAGACTTATCTCCCTGAAGTT
*
35560895 GCAGTGGAGCAGAC
261 GCAGCGGAGCAGAC
* * * * *
35560909 TGAATATAGCGAATCTTATTTCCCTGAAA-TTGCAGTGGAACAGATTGAAGCTATAAATTACAGA
1 TGAAGATAGCGAATCTTATTTCCCT-AAAGTTACATTGGAACAGATTAAAGCTACAAATTACAGA
* * * * * *
35560973 TCTTATCTCTCTAAAGTTGCAGTAGAGTATATCATAGCAAACCTTATCTCCCTGAAGTTGCAGTG
65 TCTTATCTCTCTGAAGTTGCAATAGAGCAGATCATAGTAATCC-TATCTCCCTGAAGTTGCAGTG
35561038 GAGC
129 GAGC
35561042 AGGTTGAAGT
Statistics
Matches: 376, Mismatches: 29, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
274 349 0.93
275 27 0.07
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (274 bp):
TGAAGATAGCGAATCTTATTTCCCTAAAGTTACATTGGAACAGATTAAAGCTACAAATTACAGAT
CTTATCTCTCTGAAGTTGCAATAGAGCAGATCATAGTAATCCTATCTCCCTGAAGTTGCAGTGGA
GCGGATTAAAACTAGAAATCCTATACCTCTGAGGTTGCAGTAGGTCAGATTAAATCTATCATAGA
AAACATTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACAAGACTTATCTCCCTGAAGTT
GCAGCGGAGCAGAC
Found at i:35560898 original size:44 final size:44
Alignment explanation
Indices: 35560835--35561267 Score: 265
Period size: 44 Copynumber: 9.6 Consensus size: 44
35560825 ATAGAAAACA
*
35560835 TTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGTTACAAGTC
* *
35560879 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAA-TATAGCGAA-TC
1 TTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGT-TA-C-AAGTC
* * ** *
35560924 TTATTTCCCTGAAATTGCAGTGGAACAGATTGAAGCTATAAATTACAGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAG-T-T--A-CA-AG-TC
* * * * * **
35560975 TTATCTCTCTAAAGTTGCAGTAGAGTATA-T-CA--TAGCAAACC
1 TTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGTTA-CAAGTC
* *
35561016 TTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGTTACAAGTC
* * * **
35561060 TTATCTCTCTGAAGTTGCAGTGGAGTAGACTAAAGAAAGCGAA-TC
1 TTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGTTA-C-AAGTC
* * ** *
35561105 TTATTTCCCTGAAGTTGTAGTGGAACAGATTGAAGCTATAAATTACGAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAG-T-TACA--A-G--TC
** * * * **
35561156 TTATCTCTTTGAAGTTGCAGTAGAGTAGATCGTAG---CAAACC
1 TTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGTTACAAGTC
* * *
35561197 TTATCTCCCTGAAGTTACAGTGGAGTAGGTTAAAGTTACAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGTTACAAGTC
* *
35561241 TTATCTCCCTAAAGTTGTAGTGGAGTA
1 TTATCTCCCTGAAGTTGCAGTGGAGTA
35561268 CACTCAAGAT
Statistics
Matches: 289, Mismatches: 73, Indels: 54
0.69 0.18 0.13
Matches are distributed among these distances:
41 52 0.18
42 2 0.01
43 4 0.01
44 97 0.34
45 68 0.24
46 5 0.02
47 5 0.02
48 1 0.00
49 3 0.01
50 1 0.00
51 51 0.18
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (44 bp):
TTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGTTACAAGTC
Found at i:35561034 original size:181 final size:181
Alignment explanation
Indices: 35560821--35561289 Score: 733
Period size: 181 Copynumber: 2.6 Consensus size: 181
35560811 AGATTAAATC
* *
35560821 TATCATAGAAAACATTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACAAGTCTTATCTC
1 TATCATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACAAGTCTTATCTC
* * *
35560886 CCTGAAGTTGCAGTGGAGCAGACTGAATATAGCGAATCTTATTTCCCTGAAATTGCAGTGGAACA
66 CCTGAAGTTGCAGTGGAGTAGACTAAAGATAGCGAATCTTATTTCCCTGAAATTGCAGTGGAACA
35560951 GATTGAAGCTATAAATTAC-AGATCTTATCTCTCTAAAGTTGCAGTAGAGTA
131 GATTGAAGCTATAAATTACGA-ATCTTATCTCTCTAAAGTTGCAGTAGAGTA
*
35561002 TATCATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTC
1 TATCATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACAAGTCTTATCTC
* * * *
35561067 TCTGAAGTTGCAGTGGAGTAGACTAAAGAAAGCGAATCTTATTTCCCTGAAGTTGTAGTGGAACA
66 CCTGAAGTTGCAGTGGAGTAGACTAAAGATAGCGAATCTTATTTCCCTGAAATTGCAGTGGAACA
* *
35561132 GATTGAAGCTATAAATTACGAATCTTATCTCTTTGAAGTTGCAGTAGAGTA
131 GATTGAAGCTATAAATTACGAATCTTATCTCTCTAAAGTTGCAGTAGAGTA
* * * *
35561183 GATCGTAGCAAACCTTATCTCCCTGAAGTTACAGTGGAGTAGGTTAAAGTTACAAGTCTTATCTC
1 TATCATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACAAGTCTTATCTC
* * * * *
35561248 CCTAAAGTTGTAGTGGAGTACACTCAAGATAACGAATCTTAT
66 CCTGAAGTTGCAGTGGAGTAGACTAAAGATAGCGAATCTTAT
35561290 CATATCAAAC
Statistics
Matches: 263, Mismatches: 24, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
181 262 1.00
182 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (181 bp):
TATCATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACAAGTCTTATCTC
CCTGAAGTTGCAGTGGAGTAGACTAAAGATAGCGAATCTTATTTCCCTGAAATTGCAGTGGAACA
GATTGAAGCTATAAATTACGAATCTTATCTCTCTAAAGTTGCAGTAGAGTA
Found at i:35561035 original size:92 final size:92
Alignment explanation
Indices: 35560914--35561220 Score: 333
Period size: 92 Copynumber: 3.4 Consensus size: 92
35560904 CAGACTGAAT
* * * *
35560914 ATAGCGAATCTTATTTCCCTGAAATTGCAGTGGAACAGATTGAAGCTATAAATTACAGATCTTAT
1 ATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATTACAGATCTTAT
*
35560979 CTCTCTAAAGTTGCAGTAGAGTATATC
66 CTCTCTGAAGTTGCAGTAGAGTATATC
* * *
35561006 ATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAG-T-T--A-CA-AG-TCTTAT
1 ATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATTACAGATCTTAT
* **
35561064 CTCTCTGAAGTTGCAGTGGAGTAGACTAAAG
66 CTCTCTGAAGTTGCAGTAGAGT--A-T-ATC
* * * * *
35561095 AAAGCGAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTGAAGCTATAAATTAC-GAATCTTA
1 ATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATTACAG-ATCTTA
* *
35561159 TCTCTTTGAAGTTGCAGTAGAGTAGATC
65 TCTCTCTGAAGTTGCAGTAGAGTATATC
* *
35561187 GTAGCAAACCTTATCTCCCTGAAGTTACAGTGGA
1 ATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGA
35561221 GTAGGTTAAA
Statistics
Matches: 172, Mismatches: 31, Indels: 24
0.76 0.14 0.11
Matches are distributed among these distances:
85 26 0.15
86 2 0.01
87 2 0.01
88 2 0.01
89 39 0.23
90 2 0.01
91 2 0.01
92 67 0.39
93 1 0.01
94 3 0.02
96 26 0.15
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.31
Consensus pattern (92 bp):
ATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATTACAGATCTTAT
CTCTCTGAAGTTGCAGTAGAGTATATC
Found at i:35561763 original size:18 final size:18
Alignment explanation
Indices: 35561740--35561775 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
35561730 CAAAAAAAAA
35561740 AACCTAACCCTAGATGCG
1 AACCTAACCCTAGATGCG
*
35561758 AACCTAACCCTAGGTGCG
1 AACCTAACCCTAGATGCG
35561776 CCGTACCTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.33, G:0.19, T:0.17
Consensus pattern (18 bp):
AACCTAACCCTAGATGCG
Found at i:35571926 original size:18 final size:19
Alignment explanation
Indices: 35571903--35571942 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
35571893 TTTAGGGATT
*
35571903 AAATTTAA-TAAAATGTGA
1 AAATTTAAGGAAAATGTGA
*
35571921 AAATTTAAGGAAATTGTGA
1 AAATTTAAGGAAAATGTGA
35571940 AAA
1 AAA
35571943 CTAAAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.55, C:0.00, G:0.15, T:0.30
Consensus pattern (19 bp):
AAATTTAAGGAAAATGTGA
Found at i:35572386 original size:22 final size:22
Alignment explanation
Indices: 35572361--35572402 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
35572351 TGTATTCTAA
*
35572361 TTCGCACTTCTATTCCTATTGG
1 TTCGCACTTCTATGCCTATTGG
*
35572383 TTCGCACTTTTATGCCTATT
1 TTCGCACTTCTATGCCTATT
35572403 ATTCTGCACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.14, C:0.26, G:0.12, T:0.48
Consensus pattern (22 bp):
TTCGCACTTCTATGCCTATTGG
Found at i:35572411 original size:22 final size:22
Alignment explanation
Indices: 35572360--35572412 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
35572350 GTGTATTCTA
*
35572360 ATTCGCACTTCTATTCCTATTG
1 ATTCGCACTTCTATGCCTATTG
* *
35572382 GTTCGCACTTTTATGCCTATT-
1 ATTCGCACTTCTATGCCTATTG
35572403 ATTCTGCACT
1 ATTC-GCACT
35572413 CTGGTGCCTA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 3 0.12
22 23 0.88
ACGTcount: A:0.17, C:0.26, G:0.11, T:0.45
Consensus pattern (22 bp):
ATTCGCACTTCTATGCCTATTG
Found at i:35581458 original size:18 final size:18
Alignment explanation
Indices: 35581435--35581481 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
35581425 CCATGAATTT
35581435 ATAAATAATAAC-TAAAAC
1 ATAAATAATAACAT-AAAC
*
35581453 ATAAATAA-AACATTAAC
1 ATAAATAATAACATAAAC
35581470 ATACAATAATAA
1 ATA-AATAATAA
35581482 TATACGACTT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 9 0.36
18 14 0.56
19 2 0.08
ACGTcount: A:0.66, C:0.11, G:0.00, T:0.23
Consensus pattern (18 bp):
ATAAATAATAACATAAAC
Found at i:35581561 original size:15 final size:15
Alignment explanation
Indices: 35581541--35581576 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
35581531 AACAACATGA
*
35581541 AATAATAGGAATAAC
1 AATAATAGCAATAAC
*
35581556 AATAATAGCAATAAT
1 AATAATAGCAATAAC
35581571 AATAAT
1 AATAAT
35581577 GATAAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.61, C:0.06, G:0.08, T:0.25
Consensus pattern (15 bp):
AATAATAGCAATAAC
Found at i:35602616 original size:14 final size:14
Alignment explanation
Indices: 35602592--35602630 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
35602582 TGATAAATTT
35602592 TAAAT-TTTTTTAA
1 TAAATATTTTTTAA
35602605 TAAATATTTTTTAA
1 TAAATATTTTTTAA
*
35602619 AAAATGATTTTT
1 TAAAT-ATTTTT
35602631 AGAGTAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 5 0.22
14 12 0.52
15 6 0.26
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (14 bp):
TAAATATTTTTTAA
Found at i:35607641 original size:16 final size:16
Alignment explanation
Indices: 35607622--35607665 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
35607612 TATGAAGCTA
35607622 AACTGTTAAAGAAGTT
1 AACTGTTAAAGAAGTT
35607638 AACTGTTAAA-AAG--
1 AACTGTTAAAGAAGTT
35607651 --CTGTTAAAGAAGTT
1 AACTGTTAAAGAAGTT
35607665 A
1 A
35607666 GGGTACGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 9
0.73 0.00 0.27
Matches are distributed among these distances:
11 8 0.33
12 3 0.12
15 3 0.12
16 10 0.42
ACGTcount: A:0.45, C:0.07, G:0.18, T:0.30
Consensus pattern (16 bp):
AACTGTTAAAGAAGTT
Found at i:35607704 original size:16 final size:16
Alignment explanation
Indices: 35607683--35607726 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
35607673 TTTGGTTCAT
35607683 TGTAATAGAATAGAGC
1 TGTAATAGAATAGAGC
* * *
35607699 TGTAATTGGATAGAGT
1 TGTAATAGAATAGAGC
*
35607715 TGTAATGGAATA
1 TGTAATAGAATA
35607727 AAACTATAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.39, C:0.02, G:0.27, T:0.32
Consensus pattern (16 bp):
TGTAATAGAATAGAGC
Found at i:35607895 original size:6 final size:6
Alignment explanation
Indices: 35607884--35607912 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
35607874 AGGTAGATGA
35607884 TTATTG TTATTG TTATTG TTATTG TTATT
1 TTATTG TTATTG TTATTG TTATTG TTATT
35607913 AAATTTTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.14, T:0.69
Consensus pattern (6 bp):
TTATTG
Found at i:35607953 original size:14 final size:13
Alignment explanation
Indices: 35607934--35607963 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
35607924 AGATTGTTAT
35607934 TAAAAATAATATAA
1 TAAAAATAATA-AA
35607948 TAAAAATAATAAA
1 TAAAAATAATAAA
35607961 TAA
1 TAA
35607964 TTTAACCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (13 bp):
TAAAAATAATAAA
Found at i:35608007 original size:58 final size:58
Alignment explanation
Indices: 35607930--35608049 Score: 152
Period size: 58 Copynumber: 2.1 Consensus size: 58
35607920 AATAAGATTG
* *
35607930 TTATTAAAAATAATATAATAAAAATAATAAATAATTTAACCATATT-TTAAAATAATTA
1 TTATTAAAAATAATATAAT-AAAATAATAAATAATTTAACAAAATTCTTAAAATAATTA
* * * * * *
35607988 TTATTAAATATAATTTAATAAAATAGTATATAATTTAATAAAATTCTTAATATAATTA
1 TTATTAAAAATAATATAATAAAATAATAAATAATTTAACAAAATTCTTAAAATAATTA
35608046 TTAT
1 TTAT
35608050 ATGAATTAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
57 21 0.40
58 32 0.60
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (58 bp):
TTATTAAAAATAATATAATAAAATAATAAATAATTTAACAAAATTCTTAAAATAATTA
Found at i:35609821 original size:28 final size:28
Alignment explanation
Indices: 35609789--35609869 Score: 101
Period size: 28 Copynumber: 2.9 Consensus size: 28
35609779 ATATAATGAA
35609789 TTTATATTTTTTATTTTTAAAATATTTT
1 TTTATATTTTTTATTTTTAAAATATTTT
35609817 TTTAT-TATTTTTATTTTTAAAATATTTT
1 TTTATAT-TTTTTATTTTTAAAATATTTT
** * *
35609845 TAAAATACTTTTTATTCTTAAAATA
1 T-TTATATTTTTTATTTTTAAAATA
35609870 AATTTTTGGT
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
27 1 0.02
28 27 0.59
29 18 0.39
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (28 bp):
TTTATATTTTTTATTTTTAAAATATTTT
Found at i:35609845 original size:12 final size:11
Alignment explanation
Indices: 35609828--35609858 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
35609818 TTATTATTTT
35609828 TATTTTTAAAA
1 TATTTTTAAAA
35609839 TATTTTTAAAA
1 TATTTTTAAAA
35609850 TACTTTTTA
1 TA-TTTTTA
35609859 TTCTTAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.68
12 6 0.32
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (11 bp):
TATTTTTAAAA
Found at i:35615555 original size:11 final size:11
Alignment explanation
Indices: 35615539--35615563 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
35615529 GGGCCTGCAA
35615539 AATAGGCTTGT
1 AATAGGCTTGT
35615550 AATAGGCTTGT
1 AATAGGCTTGT
35615561 AAT
1 AAT
35615564 GGCATAGTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (11 bp):
AATAGGCTTGT
Found at i:35619947 original size:15 final size:15
Alignment explanation
Indices: 35619911--35619960 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
35619901 CTTGGGCATT
**
35619911 GGTTTGGGCTG-AAG
1 GGTTTGGGCTGTTCG
35619925 GGTATTGGGCTGTTCG
1 GGT-TTGGGCTGTTCG
*
35619941 GGTTTGGGCTATTCG
1 GGTTTGGGCTGTTCG
35619956 GGTTT
1 GGTTT
35619961 TGCTAGTTGG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
14 3 0.10
15 24 0.77
16 4 0.13
ACGTcount: A:0.08, C:0.10, G:0.44, T:0.38
Consensus pattern (15 bp):
GGTTTGGGCTGTTCG
Found at i:35620423 original size:2 final size:2
Alignment explanation
Indices: 35620416--35620455 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
35620406 AGAAAACTTA
* * *
35620416 AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT GT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
35620456 GTAGATATAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (2 bp):
AT
Found at i:35620611 original size:2 final size:2
Alignment explanation
Indices: 35620604--35620644 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
35620594 TTAGAAAACT
* * *
35620604 TA TA TA TA TA TA TA TA CA TA TA TA TA TA TA TG TA TG TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
35620645 GTAGATATAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (2 bp):
TA
Found at i:35620735 original size:189 final size:190
Alignment explanation
Indices: 35620406--35620784 Score: 751
Period size: 189 Copynumber: 2.0 Consensus size: 190
35620396 GTTTGGTGAA
35620406 AGAAAACTTAATATATATATATATACATATATATATATATGTATGTATATGTAGATATAAGCTCA
1 AGAAAACTTAATATATATATATATACATATATATATATATGTATGTATATGTAGATATAAGCTCA
35620471 AAGGTTTAAGAGTCCCTAAATTGCAGGAGAAATCATAATTTTTTAGGGTTTAAGATTAAATTATA
66 AAGGTTTAAGAGTCCCTAAATTGCAGGAGAAATCATAATTTTTTAGGGTTTAAGATTAAATTATA
35620536 TATTTTTATGAGAGTTAAAATGTAATTTTATTTTTATATGGCTTATATTTTTATGGTTTT
131 TATTTTTATGAGAGTTAAAATGTAATTTTATTTTTATATGGCTTATATTTTTATGGTTTT
35620596 AGAAAACTT-ATATATATATATATACATATATATATATATGTATGTATATGTAGATATAAGCTCA
1 AGAAAACTTAATATATATATATATACATATATATATATATGTATGTATATGTAGATATAAGCTCA
35620660 AAGGTTTAAGAGTCCCTAAATTGCAGGAGAAATCATAATTTTTTAGGGTTTAAGATTAAATTATA
66 AAGGTTTAAGAGTCCCTAAATTGCAGGAGAAATCATAATTTTTTAGGGTTTAAGATTAAATTATA
35620725 TATTTTTATGAGAGTTAAAATGTAATTTTATTTTTATATGGCTTATATTTTTATGGTTTT
131 TATTTTTATGAGAGTTAAAATGTAATTTTATTTTTATATGGCTTATATTTTTATGGTTTT
35620785 CAAAAGGACT
Statistics
Matches: 189, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
189 180 0.95
190 9 0.05
ACGTcount: A:0.37, C:0.05, G:0.14, T:0.44
Consensus pattern (190 bp):
AGAAAACTTAATATATATATATATACATATATATATATATGTATGTATATGTAGATATAAGCTCA
AAGGTTTAAGAGTCCCTAAATTGCAGGAGAAATCATAATTTTTTAGGGTTTAAGATTAAATTATA
TATTTTTATGAGAGTTAAAATGTAATTTTATTTTTATATGGCTTATATTTTTATGGTTTT
Found at i:35624767 original size:11 final size:11
Alignment explanation
Indices: 35624751--35624776 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
35624741 AAAAATTAAA
35624751 AAAAGTATTTT
1 AAAAGTATTTT
35624762 AAAAGTATTTT
1 AAAAGTATTTT
35624773 AAAA
1 AAAA
35624777 TTAAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (11 bp):
AAAAGTATTTT
Found at i:35624791 original size:8 final size:9
Alignment explanation
Indices: 35624773--35624833 Score: 54
Period size: 9 Copynumber: 6.4 Consensus size: 9
35624763 AAAGTATTTT
35624773 AAAATTAAA
1 AAAATTAAA
35624782 AAAATTAAAA
1 AAAATT-AAA
35624792 AAAGTATTTTAAA
1 AAA--A--TTAAA
*
35624805 AAAATT--T
1 AAAATTAAA
35624812 AAAATTAAA
1 AAAATTAAA
35624821 AAAATTAAA
1 AAAATTAAA
35624830 AAAA
1 AAAA
35624834 AGCTAACAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 14
0.73 0.03 0.24
Matches are distributed among these distances:
7 6 0.14
9 21 0.49
10 6 0.14
11 1 0.02
12 1 0.02
13 6 0.14
14 2 0.05
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (9 bp):
AAAATTAAA
Found at i:35624795 original size:40 final size:39
Alignment explanation
Indices: 35624723--35624833 Score: 159
Period size: 39 Copynumber: 2.7 Consensus size: 39
35624713 ACCAAAAATT
35624723 TATTTTAAAAATTAAAATAAAAATTAAAAAAAGTATTTTAAAA
1 TATTTT-AAAATT--AA-AAAAATTAAAAAAAGTATTTTAAAA
35624766 GTATTTTAAAATTAAAAAAATTAAAAAAAGTATTTTAAAA
1 -TATTTTAAAATTAAAAAAATTAAAAAAAGTATTTTAAAA
* *
35624806 AAATTTAAAATTAAAAAAATTAAAAAAA
1 TATTTTAAAATTAAAAAAATTAAAAAAA
35624834 AGCTAACAAA
Statistics
Matches: 65, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
39 26 0.40
40 25 0.38
41 2 0.03
43 6 0.09
44 6 0.09
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (39 bp):
TATTTTAAAATTAAAAAAATTAAAAAAAGTATTTTAAAA
Found at i:35624819 original size:16 final size:15
Alignment explanation
Indices: 35624782--35624830 Score: 55
Period size: 14 Copynumber: 3.3 Consensus size: 15
35624772 TAAAATTAAA
*
35624782 AAAATTAAAAAAAGT
1 AAAATTAAAAAAATT
**
35624797 -ATTTTAAAAAAATTT
1 AAAATTAAAAAAA-TT
35624812 AAAATTAAAAAAATT
1 AAAATTAAAAAAATT
35624827 AAAA
1 AAAA
35624831 AAAAGCTAAC
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
14 10 0.37
15 7 0.26
16 10 0.37
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (15 bp):
AAAATTAAAAAAATT
Found at i:35624821 original size:29 final size:28
Alignment explanation
Indices: 35624762--35624824 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 28
35624752 AAAGTATTTT
35624762 AAAAGTATTTTAAAATTAAAAAAATTAAA
1 AAAAGTATTTTAAAA-TAAAAAAATTAAA
35624791 AAAAGTATTTTAAAA-AAATTTAAAATTAAA
1 AAAAGTATTTTAAAATAAA---AAAATTAAA
35624821 AAAA
1 AAAA
35624825 TTAAAAAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
27 3 0.10
29 15 0.48
30 13 0.42
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (28 bp):
AAAAGTATTTTAAAATAAAAAAATTAAA
Found at i:35624831 original size:16 final size:16
Alignment explanation
Indices: 35624800--35624831 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
35624790 AAAAAGTATT
*
35624800 TTAAAAAAATTTAAAA
1 TTAAAAAAATTAAAAA
35624816 TTAAAAAAATTAAAAA
1 TTAAAAAAATTAAAAA
35624832 AAAGCTAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (16 bp):
TTAAAAAAATTAAAAA
Found at i:35624835 original size:40 final size:40
Alignment explanation
Indices: 35624741--35624833 Score: 161
Period size: 39 Copynumber: 2.4 Consensus size: 40
35624731 AAATTAAAAT
* *
35624741 AAAAATTAAAAAAAGTATTTTAAAAGTATTTTAAAATTAA
1 AAAAATTAAAAAAAGTATTTTAAAAGAAATTTAAAATTAA
35624781 AAAAATTAAAAAAAGTATTTTAAAA-AAATTTAAAATTAA
1 AAAAATTAAAAAAAGTATTTTAAAAGAAATTTAAAATTAA
35624820 AAAAATTAAAAAAA
1 AAAAATTAAAAAAA
35624834 AGCTAACAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
39 26 0.51
40 25 0.49
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (40 bp):
AAAAATTAAAAAAAGTATTTTAAAAGAAATTTAAAATTAA
Found at i:35624952 original size:17 final size:19
Alignment explanation
Indices: 35624930--35624974 Score: 58
Period size: 17 Copynumber: 2.4 Consensus size: 19
35624920 CTAAAATAGT
35624930 AACAAAATTA-ACAATAA-
1 AACAAAATTATACAATAAC
*
35624947 AACAAAAGTTATATAATAAC
1 AACAAAA-TTATACAATAAC
35624967 AACAAAAT
1 AACAAAAT
35624975 AGTAGCAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 7 0.29
18 3 0.12
19 7 0.29
20 7 0.29
ACGTcount: A:0.67, C:0.11, G:0.02, T:0.20
Consensus pattern (19 bp):
AACAAAATTATACAATAAC
Found at i:35625906 original size:13 final size:13
Alignment explanation
Indices: 35625884--35625936 Score: 54
Period size: 13 Copynumber: 3.8 Consensus size: 13
35625874 AAAAACAACT
*
35625884 TTTTCGGAAAATA
1 TTTTCAGAAAATA
35625897 TTTTCAGAAAATA
1 TTTTCAGAAAATA
35625910 TTTTCTA-ATAAATCA
1 TTTTC-AGA-AAAT-A
35625925 TTTTACAGAAAA
1 TTTT-CAGAAAA
35625937 GTAAAACATT
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
13 18 0.53
14 5 0.15
15 9 0.26
16 2 0.06
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.40
Consensus pattern (13 bp):
TTTTCAGAAAATA
Found at i:35625958 original size:34 final size:35
Alignment explanation
Indices: 35625904--35625970 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
35625894 ATATTTTCAG
* *
35625904 AAAATATTTTCTAATAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAATAAATCATTTTACAGAAAAGT
*
35625939 AAAACATTTTCCAA-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAATAAATCATTTTACAGAAAA
35625971 CATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.49, C:0.12, G:0.06, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAATAAATCATTTTACAGAAAAGT
Found at i:35627158 original size:23 final size:25
Alignment explanation
Indices: 35627131--35627184 Score: 69
Period size: 23 Copynumber: 2.3 Consensus size: 25
35627121 TTAAATTTTA
*
35627131 AATTTTATAAG-TAATAATT-ATTT
1 AATTTTAGAAGATAATAATTCATTT
35627154 AATTTT-GAAGATAATAATTCATTT
1 AATTTTAGAAGATAATAATTCATTT
*
35627178 TATTTTA
1 AATTTTA
35627185 ATACGATACC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
22 3 0.12
23 14 0.54
24 9 0.35
ACGTcount: A:0.41, C:0.02, G:0.06, T:0.52
Consensus pattern (25 bp):
AATTTTAGAAGATAATAATTCATTT
Found at i:35628853 original size:17 final size:18
Alignment explanation
Indices: 35628795--35628855 Score: 61
Period size: 20 Copynumber: 3.3 Consensus size: 18
35628785 GCCATCCTAC
*
35628795 TATATTATATAATGTTATA
1 TATATTATATAGT-TTATA
* *
35628814 TCATATCATATAGTATATAA
1 T-ATATTATATAGTTTAT-A
35628834 TATATTA-ATAGTTTATA
1 TATATTATATAGTTTATA
35628851 TATAT
1 TATAT
35628856 GCATCAATGA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
17 6 0.17
18 8 0.23
19 9 0.26
20 12 0.34
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (18 bp):
TATATTATATAGTTTATA
Found at i:35629015 original size:10 final size:10
Alignment explanation
Indices: 35629000--35629033 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
35628990 CCCTCTTACT
35629000 ATATTATATA
1 ATATTATATA
*
35629010 ATATTATATC
1 ATATTATATA
*
35629020 ATATCATATA
1 ATATTATATA
35629030 ATAT
1 ATAT
35629034 ATTAATAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (10 bp):
ATATTATATA
Found at i:35632858 original size:244 final size:233
Alignment explanation
Indices: 35632491--35633100 Score: 731
Period size: 244 Copynumber: 2.5 Consensus size: 233
35632481 AATTATTAAC
* * * * * *
35632491 ATATATTATTGTTTATTATTATACTGGTTGAAATATACTCTAAGTCTCTATACTTTTCGTACATT
1 ATATATTATTATTTATTATTATATTAGTTGAAATATGCTCTAAGTCCCTATATTTTTCGTACATT
*
35632556 TGAAAGTTAACCCTCCCTACTATATTAT-TAATGTTGTATCATATCATATAGTATATAATATATT
66 TGAAAGTTAACCCT-CCTACTATATTATATAATGTTATATCATATCATATAGTATATAATATA--
* ** *
35632620 TTAATAGTTTATACACATATATGCATCAATGTTTAGACATTATAATATCATATAATACTATATAT
128 ATAATAG-TT-T----ATATATGCATCAATAATTAAACATTATAATATCATATAATACTATATAT
* * *
35632685 TTTATTATAATCAATAATATAATAATAGTTATATATAATGGTAGTACATT
187 TTTATTATAATCAATAAGATAAT-A-A-TTATATAAAATAGTAGTACATT
35632735 ATATATTATTATTTATTATTATATTAGTTGAAATATGCTCTAAGTCCCTATATTTTTCGTACATT
1 ATATATTATTATTTATTATTATATTAGTTGAAATATGCTCTAAGTCCCTATATTTTTCGTACATT
* *
35632800 TGAAAGTTAACCCTCCTACTATATTATATAATGCTATATCATATCGTATA-TAATATAATATAAT
66 TGAAAGTTAACCCTCCTACTATATTATATAATGTTATATCATATCATATAGT-ATATAATATAAT
* *
35632864 AATAGTTTATATATGCATCAATAATTAAACATTATAGTATCATATAATACTATATCTTTTATTAT
130 AATAGTTTATATATGCATCAATAATTAAACATTATAATATCATATAATACTATATATTTTATTAT
*
35632929 AATCTATAAGATAATAATTATATAAAATAGTAGTACATT
195 AATCAATAAGATAATAATTATATAAAATAGTAGTACATT
*
35632968 ATATATTATATATTAATTATTATTGTTTATTATTATACTGGTTGAAATATGCTCTAAGTCCTTAT
1 ATATATTAT-TA-T--TTATTA----TTA-TA-T-TA---GTTGAAATATGCTCTAAGTCCCTAT
* * * *
35633033 AGTTTTT-GTACATATGAAAGGTAGCCATCCTACTATATTATATAATGTTATATCATATCATATA
52 A-TTTTTCGTACATTTGAAAGTTAACCCTCCTACTATATTATATAATGTTATATCATATCATATA
35633097 GTAT
116 GTAT
35633101 NNNNNNNNNN
Statistics
Matches: 322, Mismatches: 26, Indels: 33
0.85 0.07 0.09
Matches are distributed among these distances:
233 29 0.09
234 3 0.01
235 2 0.01
236 65 0.20
237 6 0.02
240 1 0.00
241 5 0.02
242 8 0.02
243 15 0.05
244 104 0.32
247 78 0.24
248 6 0.02
ACGTcount: A:0.38, C:0.10, G:0.08, T:0.44
Consensus pattern (233 bp):
ATATATTATTATTTATTATTATATTAGTTGAAATATGCTCTAAGTCCCTATATTTTTCGTACATT
TGAAAGTTAACCCTCCTACTATATTATATAATGTTATATCATATCATATAGTATATAATATAATA
ATAGTTTATATATGCATCAATAATTAAACATTATAATATCATATAATACTATATATTTTATTATA
ATCAATAAGATAATAATTATATAAAATAGTAGTACATT
Found at i:35639128 original size:24 final size:25
Alignment explanation
Indices: 35639087--35639142 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
35639077 TTTACCCATT
35639087 TATATTATTATTTT-AAAATTTAAAA
1 TATA-TATTATTTTAAAAATTTAAAA
*
35639112 -ATATATTTTTTTCAAAAATTTAAAA
1 TATATATTATTTT-AAAAATTTAAAA
35639137 TATATA
1 TATATA
35639143 AATTAATAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 8 0.30
24 3 0.11
25 11 0.41
26 5 0.19
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (25 bp):
TATATATTATTTTAAAAATTTAAAA
Found at i:35643383 original size:18 final size:19
Alignment explanation
Indices: 35643354--35643394 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
35643344 GCATACCTTT
*
35643354 TAAAATTAAAACCTAAAAA
1 TAAAATTAAAACCGAAAAA
35643373 TAAAA-TAAAACCGAAAAA
1 TAAAATTAAAACCGAAAAA
35643391 -AAAA
1 TAAAA
35643395 GTGAATGATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 4 0.19
18 12 0.57
19 5 0.24
ACGTcount: A:0.73, C:0.10, G:0.02, T:0.15
Consensus pattern (19 bp):
TAAAATTAAAACCGAAAAA
Found at i:35646195 original size:14 final size:14
Alignment explanation
Indices: 35646178--35646204 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
35646168 TTCTTTAATT
35646178 TTTCTTTCTTTCTC
1 TTTCTTTCTTTCTC
35646192 TTTCTTTCTTTCT
1 TTTCTTTCTTTCT
35646205 TATATTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTCTTTCTTTCTC
Found at i:35646212 original size:33 final size:32
Alignment explanation
Indices: 35646158--35646221 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 32
35646148 TGTTCTAATT
35646158 TCTTTTTTATTTCTTTAATTTTTCTT-TCTTTC
1 TCTTTTTTATTTCTTTAATTTTT-TTATCTTTC
*
35646190 TCTTTCTTTCTTTC-TTATATTTTTTTATCTTT
1 TCTTT-TTTATTTCTTTA-ATTTTTTTATCTTT
35646222 TCCCTCTTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
32 10 0.36
33 18 0.64
ACGTcount: A:0.09, C:0.16, G:0.00, T:0.75
Consensus pattern (32 bp):
TCTTTTTTATTTCTTTAATTTTTTTATCTTTC
Found at i:35657316 original size:13 final size:13
Alignment explanation
Indices: 35657300--35657342 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
35657290 TAAATTTGTT
35657300 ATTTTTATTTTCA
1 ATTTTTATTTTCA
* * *
35657313 ATTTATATATTCT
1 ATTTTTATTTTCA
*
35657326 TTTTTTATTTTCA
1 ATTTTTATTTTCA
35657339 ATTT
1 ATTT
35657343 ATATATTTTT
Statistics
Matches: 22, Mismatches: 8, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (13 bp):
ATTTTTATTTTCA
Found at i:35657330 original size:26 final size:25
Alignment explanation
Indices: 35657301--35657353 Score: 97
Period size: 26 Copynumber: 2.1 Consensus size: 25
35657291 AAATTTGTTA
35657301 TTTTTATTTTCAATTTATATATTCTT
1 TTTTTATTTTCAATTTATATATT-TT
35657327 TTTTTATTTTCAATTTATATATTTT
1 TTTTTATTTTCAATTTATATATTTT
35657352 TT
1 TT
35657354 CAAACTTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 4 0.15
26 23 0.85
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.72
Consensus pattern (25 bp):
TTTTTATTTTCAATTTATATATTTT
Found at i:35657349 original size:15 final size:15
Alignment explanation
Indices: 35657305--35657351 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
35657295 TTGTTATTTT
35657305 TATTTTCAATTTATA
1 TATTTTCAATTTATA
35657320 TATTCTT---TTT-T-
1 TATT-TTCAATTTATA
35657331 TATTTTCAATTTATA
1 TATTTTCAATTTATA
35657346 TATTTT
1 TATTTT
35657352 TTCAAACTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 12
0.68 0.00 0.32
Matches are distributed among these distances:
10 2 0.08
11 4 0.15
12 1 0.04
13 6 0.23
14 1 0.04
15 10 0.38
16 2 0.08
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (15 bp):
TATTTTCAATTTATA
Found at i:35657429 original size:13 final size:13
Alignment explanation
Indices: 35657413--35657455 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
35657403 TAAATTTGTT
35657413 ATTTTTATTTTCA
1 ATTTTTATTTTCA
* * *
35657426 ATTTATATATTCT
1 ATTTTTATTTTCA
*
35657439 TTTTTTATTTTCA
1 ATTTTTATTTTCA
35657452 ATTT
1 ATTT
35657456 ATTTTNNNNN
Statistics
Matches: 22, Mismatches: 8, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (13 bp):
ATTTTTATTTTCA
Found at i:35657454 original size:113 final size:114
Alignment explanation
Indices: 35657240--35657457 Score: 429
Period size: 113 Copynumber: 1.9 Consensus size: 114
35657230 AAAATTTAAC
35657240 CAAACTTATTTATGTTTTATTTTTTAAACATACTTTTTTGATTTTTTAACTAAATTTGTTATTTT
1 CAAACTTATTTATGTTTTATTTTTTAAACATACTTTTTTGATTTTTTAACTAAATTTGTTATTTT
35657305 TATTTTCAATTTATATATTCTTTTTTTATTTTCAATTTATATATTTTTT
66 TATTTTCAATTTATATATTCTTTTTTTATTTTCAATTTATATATTTTTT
35657354 CAAACTTA-TTATGTTTTATTTTTTAAACATACTTTTTTGATTTTTTAACTAAATTTGTTATTTT
1 CAAACTTATTTATGTTTTATTTTTTAAACATACTTTTTTGATTTTTTAACTAAATTTGTTATTTT
35657418 TATTTTCAATTTATATATTCTTTTTTTATTTTCAATTTAT
66 TATTTTCAATTTATATATTCTTTTTTTATTTTCAATTTAT
35657458 TTTNNNNNNN
Statistics
Matches: 104, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
113 96 0.92
114 8 0.08
ACGTcount: A:0.27, C:0.07, G:0.03, T:0.63
Consensus pattern (114 bp):
CAAACTTATTTATGTTTTATTTTTTAAACATACTTTTTTGATTTTTTAACTAAATTTGTTATTTT
TATTTTCAATTTATATATTCTTTTTTTATTTTCAATTTATATATTTTTT
Found at i:35659520 original size:14 final size:14
Alignment explanation
Indices: 35659501--35659536 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
35659491 ATTTAGAGTT
*
35659501 TAGGGTTTGGGATG
1 TAGGGTTTGAGATG
35659515 TAGGGTTTGAGATG
1 TAGGGTTTGAGATG
35659529 TAGGGTTT
1 TAGGGTTT
35659537 AAGGTTTATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.17, C:0.00, G:0.44, T:0.39
Consensus pattern (14 bp):
TAGGGTTTGAGATG
Found at i:35659653 original size:14 final size:14
Alignment explanation
Indices: 35659585--35659653 Score: 50
Period size: 14 Copynumber: 4.9 Consensus size: 14
35659575 GCTGGTTGGT
* *
35659585 GTTTATGGTTTACGG
1 GTTTAAGGTTTAC-A
*
35659600 GTTTAATGTTTACA
1 GTTTAAGGTTTACA
*
35659614 GTTTAGGGTTTACA
1 GTTTAAGGTTTACA
* * *
35659628 ATTTACA-ATTTATA
1 GTTTA-AGGTTTACA
35659642 GTTTAAGGTTTA
1 GTTTAAGGTTTA
35659654 GGGTTAGTGT
Statistics
Matches: 41, Mismatches: 11, Indels: 5
0.72 0.19 0.09
Matches are distributed among these distances:
13 1 0.02
14 29 0.71
15 11 0.27
ACGTcount: A:0.26, C:0.06, G:0.20, T:0.48
Consensus pattern (14 bp):
GTTTAAGGTTTACA
Found at i:35659783 original size:150 final size:144
Alignment explanation
Indices: 35659479--35659789 Score: 342
Period size: 150 Copynumber: 2.1 Consensus size: 144
35659469 TTATGGTTAA
* *
35659479 TTTAGGG-TTACAATTTAGAGTTTAGGGTTTGGGATGTAGGGTTTGAGATGTAGGGTTTAAGGTT
1 TTTAGGGTTTACAATTTAGAGTTTAAGGTTTGGGATGTAGGATTTGAGATGTAGGGTTTAAGGTT
* *
35659543 TATGGTATATTGGGGGTTAGATTTTGAGGTTTGCTGGTTGGTGTTTATGGTTTACGGGTTTAATG
66 TATGGTATATTGGGGGTTAGATTTTGAGGTTTGCTGGTTGGTGTTGATGGTTTACGAGTTTAATG
**
35659608 TTTACAGTTTAGGG
131 TTTACAGTTTACAG
*** * * * *
35659622 TTTACAATTTACAATTTATAGTTTAAGGTTTAGGGTTAGTGTTTAGGATTTGGGATTTATGGTTT
1 TTTAGGGTTTACAATTTAGAGTTTAAGGTTT-GGG--A-TG--TAGGATTTGAGATGTAGGGTTT
* * * *
35659687 AAGGTTTATGGTATATTGGGGGTTGGATTTTGAGGTTTGGTGGTTGGTGGTTGGT-GTTTGC-AG
60 AAGGTTTATGGTATATTGGGGGTTAGATTTTGAGGTTTGCTGGTTGGT-GTTGATGGTTTACGAG
*
35659750 TTT-ATGAGTTTACTGTTTACAG
124 TTTAAT--GTTTACAGTTTACAG
*
35659772 TTTAGGGTTTACGATTTA
1 TTTAGGGTTTACAATTTA
35659790 CGGGTTATAG
Statistics
Matches: 136, Mismatches: 22, Indels: 13
0.80 0.13 0.08
Matches are distributed among these distances:
143 4 0.03
144 21 0.15
145 3 0.02
147 1 0.01
148 4 0.03
149 4 0.03
150 95 0.70
151 4 0.03
ACGTcount: A:0.19, C:0.03, G:0.32, T:0.45
Consensus pattern (144 bp):
TTTAGGGTTTACAATTTAGAGTTTAAGGTTTGGGATGTAGGATTTGAGATGTAGGGTTTAAGGTT
TATGGTATATTGGGGGTTAGATTTTGAGGTTTGCTGGTTGGTGTTGATGGTTTACGAGTTTAATG
TTTACAGTTTACAG
Found at i:35659790 original size:21 final size:22
Alignment explanation
Indices: 35659741--35659783 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
35659731 TGGTGGTTGG
*
35659741 TGTTTGCAGTTTATGAGTTTAC
1 TGTTTACAGTTTATGAGTTTAC
*
35659763 TGTTTACAGTTTA-GGGTTTAC
1 TGTTTACAGTTTATGAGTTTAC
35659784 GATTTACGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.19, C:0.09, G:0.23, T:0.49
Consensus pattern (22 bp):
TGTTTACAGTTTATGAGTTTAC
Found at i:35662334 original size:29 final size:29
Alignment explanation
Indices: 35662302--35662390 Score: 121
Period size: 29 Copynumber: 3.1 Consensus size: 29
35662292 TAAATGACTA
*
35662302 TATAATTAAGTAAGTAAATTAAACTTAAT
1 TATAATTAAGTAAGTAAAATAAACTTAAT
* *
35662331 TAT-A-TAAGTAAGTAAAATAAA-TGACT
1 TATAATTAAGTAAGTAAAATAAACTTAAT
35662357 ATATAATTAAGTAAGTAAAATAAACTTAAT
1 -TATAATTAAGTAAGTAAAATAAACTTAAT
35662387 TATA
1 TATA
35662391 TAGAAACTTA
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
26 3 0.06
27 19 0.37
28 2 0.04
29 24 0.47
30 3 0.06
ACGTcount: A:0.54, C:0.03, G:0.08, T:0.35
Consensus pattern (29 bp):
TATAATTAAGTAAGTAAAATAAACTTAAT
Found at i:35662429 original size:9 final size:9
Alignment explanation
Indices: 35662411--35662693 Score: 110
Period size: 9 Copynumber: 31.4 Consensus size: 9
35662401 TATATAATTA
*
35662411 AACTTGCAT
1 AACTTACAT
35662420 AACTTACAT
1 AACTTACAT
*
35662429 AA-TAACATAAT
1 AACTTAC---AT
35662440 AACTTACAT
1 AACTTACAT
*
35662449 AA--TATAT
1 AACTTACAT
* *
35662456 AGCCTACAT
1 AACTTACAT
* *
35662465 AAATTTCAT
1 AACTTACAT
*
35662474 AACTCACAT
1 AACTTACAT
*
35662483 AA--TACAC
1 AACTTACAT
35662490 AACTTACAT
1 AACTTACAT
*
35662499 AACTTAAAT
1 AACTTACAT
35662508 AACTTACAT
1 AACTTACAT
35662517 AA--TACAT
1 AACTTACAT
35662524 AACTTACATT
1 AACTTACA-T
*
35662534 AATATTATACAT
1 -A-ACT-TACAT
35662546 AACTTACAT
1 AACTTACAT
35662555 AA-TTA-ATT
1 AACTTACA-T
*
35662563 AATATTATACAT
1 -A-ACT-TACAT
35662575 AACTTACAT
1 AACTTACAT
35662584 AACTTA-ATT
1 AACTTACA-T
* *
35662593 ACATTATACAC
1 A-ACT-TACAT
35662604 AACTTACAT
1 AACTTACAT
*
35662613 AA--TATAT
1 AACTTACAT
*
35662620 TACTTACAT
1 AACTTACAT
35662629 AACTTACAT
1 AACTTACAT
* *
35662638 AATTTACGT
1 AACTTACAT
* *
35662647 AATTTACGT
1 AACTTACAT
35662656 AA--TACAT
1 AACTTACAT
* *
35662663 AA-ATATAT
1 AACTTACAT
* *
35662671 ATCATATCAT
1 AACTTA-CAT
35662681 AACTTACAT
1 AACTTACAT
35662690 AACT
1 AACT
35662694 CATATATACT
Statistics
Matches: 208, Mismatches: 37, Indels: 58
0.69 0.12 0.19
Matches are distributed among these distances:
7 29 0.14
8 13 0.06
9 124 0.60
10 16 0.08
11 11 0.05
12 10 0.05
13 5 0.02
ACGTcount: A:0.46, C:0.17, G:0.01, T:0.35
Consensus pattern (9 bp):
AACTTACAT
Found at i:35662498 original size:34 final size:34
Alignment explanation
Indices: 35662438--35662557 Score: 123
Period size: 34 Copynumber: 3.4 Consensus size: 34
35662428 TAATAACATA
* * * *
35662438 ATAACTTACATAATATATAGCCTACATAAATTTC
1 ATAACTTACATAATACACAACTTACATAAATTTC
* * **
35662472 ATAACTCACATAATACACAACTTACATAACTTAA
1 ATAACTTACATAATACACAACTTACATAAATTTC
*
35662506 ATAACTTACATAATACATAACTTACATTAATATTATAC
1 ATAACTTACATAATACACAACTTACA-TAA-ATT-T-C
35662544 ATAACTTACATAAT
1 ATAACTTACATAAT
35662558 TAATTAATAT
Statistics
Matches: 69, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
34 50 0.72
35 3 0.04
36 2 0.03
38 14 0.20
ACGTcount: A:0.47, C:0.18, G:0.01, T:0.33
Consensus pattern (34 bp):
ATAACTTACATAATACACAACTTACATAAATTTC
Found at i:35662547 original size:29 final size:29
Alignment explanation
Indices: 35662512--35662614 Score: 131
Period size: 29 Copynumber: 3.5 Consensus size: 29
35662502 TTAAATAACT
35662512 TACATAA-TACATAACTTACATTAATATTA
1 TACATAACTACATAACTTA-ATTAATATTA
35662541 TACATAACTTACATAA-TTAATTAATATTA
1 TACATAAC-TACATAACTTAATTAATATTA
*
35662570 TACATAACTTACATAACTTAATT-ACATTA
1 TACATAAC-TACATAACTTAATTAATATTA
*
35662599 TACACAACTTACATAA
1 TACATAAC-TACATAA
35662615 TATATTACTT
Statistics
Matches: 69, Mismatches: 2, Indels: 6
0.90 0.03 0.08
Matches are distributed among these distances:
29 53 0.77
30 9 0.13
31 7 0.10
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.37
Consensus pattern (29 bp):
TACATAACTACATAACTTAATTAATATTA
Found at i:35662632 original size:25 final size:25
Alignment explanation
Indices: 35662569--35662640 Score: 82
Period size: 25 Copynumber: 3.1 Consensus size: 25
35662559 AATTAATATT
*
35662569 ATACATAACTTACATAACTTA-AT-
1 ATACATTACTTACATAACTTACATA
*
35662592 -TACATTA--TACACAACTTACATA
1 ATACATTACTTACATAACTTACATA
*
35662614 ATATATTACTTACATAACTTACATA
1 ATACATTACTTACATAACTTACATA
35662639 AT
1 AT
35662641 TTACGTAATT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
20 10 0.25
21 2 0.05
22 6 0.15
23 6 0.15
25 16 0.40
ACGTcount: A:0.46, C:0.18, G:0.00, T:0.36
Consensus pattern (25 bp):
ATACATTACTTACATAACTTACATA
Found at i:35666965 original size:21 final size:21
Alignment explanation
Indices: 35666936--35666986 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
35666926 CTACAACTTA
* *
35666936 AAGCAGAGGCGGCAGCGAGGG
1 AAGCAGAGGCGACAGCGAGAG
* *
35666957 AAGCTGAGGCTACAGCGAGAG
1 AAGCAGAGGCGACAGCGAGAG
35666978 AAGCAGAGG
1 AAGCAGAGG
35666987 TTCAAAAGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.33, C:0.18, G:0.45, T:0.04
Consensus pattern (21 bp):
AAGCAGAGGCGACAGCGAGAG
Found at i:35667445 original size:42 final size:42
Alignment explanation
Indices: 35667388--35667844 Score: 681
Period size: 42 Copynumber: 11.0 Consensus size: 42
35667378 TTTGTGAAGA
* *
35667388 AAGCGCCGCTGAAGAACATGATCTTCAGCGGCGTTTTTTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCT
**
35667430 GTGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCT
* *
35667472 AAGCGCCGCTAAAGAACATGATCTTTAGCAGTG-TTTTTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCT
* *
35667513 AAGCGCCGCTAAAGAACATGATCTTTAGCAGTG-TTTTTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCT
* *
35667554 AAGCGCCGCTAAAGAACATGATCTTCAGCGGCGTTTTTTTAT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCT
* *
35667596 ATGCACCGCTAAAGAACATGATCTTTAGCGGC-TTTTTTTCCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTT-CT
*
35667638 AAGCGCCGCTAAAGAACATTATCTTTAGCGGCG-TTTTTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCT
* *
35667679 AAGCGTCGCTAAAGAACATGATCTTCAGCGGCGTTTTTTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCT
** *
35667721 GGGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTGT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCT
35667763 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCG-TTTTTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCT
* *
35667804 AAGCGCTGCTAAAGAACATGACCTTTAGCGGCGTTTATTTT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTT-TTTT
35667845 TGTAAACACT
Statistics
Matches: 377, Mismatches: 32, Indels: 11
0.90 0.08 0.03
Matches are distributed among these distances:
41 156 0.41
42 217 0.58
43 4 0.01
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (42 bp):
AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCT
Found at i:35667644 original size:125 final size:124
Alignment explanation
Indices: 35667388--35667844 Score: 691
Period size: 125 Copynumber: 3.7 Consensus size: 124
35667378 TTTGTGAAGA
* * **
35667388 AAGCGCCGCTGAAGAACATGATCTTCAGCGGCGTTTTTTTCTGTGCGCCGCTAAAGAACATGATC
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCG-TTTTTTCTAAGCGCCGCTAAAGAACATGATC
* *
35667453 TTTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGATCTTTAGCAG-TGTTTTTTCT
65 TTCAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCT-TTTTTTCT
* *
35667513 AAGCGCCGCTAAAGAACATGATCTTTAGCAGTGTTTTTTCTAAGCGCCGCTAAAGAACATGATCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCTAAGCGCCGCTAAAGAACATGATCT
* * *
35667578 TCAGCGGCGTTTTTTTATATGCACCGCTAAAGAACATGATCTTTAGCGGCTTTTTTTCCT
66 TCAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCTTTTTTT-CT
* *
35667638 AAGCGCCGCTAAAGAACATTATCTTTAGCGGCGTTTTTTCTAAGCGTCGCTAAAGAACATGATCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCTAAGCGCCGCTAAAGAACATGATCT
** *
35667703 TCAGCGGCGTTTTTTTCTGGGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTGT
66 TCAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGATCTTTAGCGGC-TTTTTTTCT
* *
35667763 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCTAAGCGCTGCTAAAGAACATGACCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCTAAGCGCCGCTAAAGAACATGATCT
*
35667828 TTAGCGGCGTTTATTTT
66 TCAGCGGCGTTT-TTTT
35667845 TGTAAACACT
Statistics
Matches: 303, Mismatches: 25, Indels: 7
0.90 0.07 0.02
Matches are distributed among these distances:
124 80 0.26
125 212 0.70
126 11 0.04
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (124 bp):
AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCTAAGCGCCGCTAAAGAACATGATCT
TCAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCTTTTTTTCT
Found at i:35667664 original size:166 final size:166
Alignment explanation
Indices: 35667388--35667839 Score: 699
Period size: 166 Copynumber: 2.7 Consensus size: 166
35667378 TTTGTGAAGA
* * *
35667388 AAGCGCCGCTGAAGAACATGATCTTCAGCGGCGTTTTTTTCTGTGCGCCGCTAAAGAACATGATC
1 AAGCGCCGCTAAAGAACATGATCTTCAGCGGCGTTTTTTTATATGCGCCGCTAAAGAACATGATC
*
35667453 TTTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGATCTTTAGCAGTGTTTTTTCTAAGCG
66 TTTAGCGGC-TTTTTTTCTAAGCGCCGCTAAAGAACATGATCTTTAGCAGCGTTTTTTCTAAGCG
* *
35667518 CCGCTAAAGAACATGATCTTTAGCAGTG-TTTTTTCT
130 CCGCTAAAGAACATGATCTTCAGCAGCGTTTTTTTCT
*
35667554 AAGCGCCGCTAAAGAACATGATCTTCAGCGGCGTTTTTTTATATGCACCGCTAAAGAACATGATC
1 AAGCGCCGCTAAAGAACATGATCTTCAGCGGCGTTTTTTTATATGCGCCGCTAAAGAACATGATC
* *
35667619 TTTAGCGGCTTTTTTTCCTAAGCGCCGCTAAAGAACATTATCTTTAGCGGCGTTTTTTCTAAGCG
66 TTTAGCGGCTTTTTTT-CTAAGCGCCGCTAAAGAACATGATCTTTAGCAGCGTTTTTTCTAAGCG
* *
35667684 TCGCTAAAGAACATGATCTTCAGCGGCGTTTTTTTCT
130 CCGCTAAAGAACATGATCTTCAGCAGCGTTTTTTTCT
** * * *
35667721 GGGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTGTAAGCGCCGCTAAAGAACATGATC
1 AAGCGCCGCTAAAGAACATGATCTTCAGCGGCGTTTTTTTATATGCGCCGCTAAAGAACATGATC
* * * *
35667786 TTTAGCGGCGTTTTTTCTAAGCGCTGCTAAAGAACATGACCTTTAGCGGCGTTT
66 TTTAGCGGCTTTTTTTCTAAGCGCCGCTAAAGAACATGATCTTTAGCAGCGTTT
35667840 ATTTTTGTAA
Statistics
Matches: 263, Mismatches: 21, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
165 7 0.03
166 174 0.66
167 82 0.31
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (166 bp):
AAGCGCCGCTAAAGAACATGATCTTCAGCGGCGTTTTTTTATATGCGCCGCTAAAGAACATGATC
TTTAGCGGCTTTTTTTCTAAGCGCCGCTAAAGAACATGATCTTTAGCAGCGTTTTTTCTAAGCGC
CGCTAAAGAACATGATCTTCAGCAGCGTTTTTTTCT
Found at i:35667949 original size:22 final size:22
Alignment explanation
Indices: 35667917--35667960 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
35667907 TCAGTGGCAC
*
35667917 TAAAAAGCGCCCCTAAAGGCCT
1 TAAAAAACGCCCCTAAAGGCCT
*
35667939 TAAAAAACGCCGCTAAAGGCCT
1 TAAAAAACGCCCCTAAAGGCCT
35667961 GTTCTGGTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.39, C:0.30, G:0.18, T:0.14
Consensus pattern (22 bp):
TAAAAAACGCCCCTAAAGGCCT
Found at i:35673991 original size:59 final size:61
Alignment explanation
Indices: 35673911--35674025 Score: 153
Period size: 62 Copynumber: 1.9 Consensus size: 61
35673901 CACCTTAATA
** * * *
35673911 TTAAATTAATTTAATACTTA-T-CAAGATAAATATTAGATTAAATTTCATATTAAATCTTT
1 TTAAATTAATAAAATACTTACTACAAGATAAATAGTAAATTAAATTTAATATTAAATCTTT
*
35673970 TTAAATTAATAAAATATTTATCTACAAGATAAATAGTAAATTAAATTTAATATTAA
1 TTAAATTAATAAAATACTTA-CTACAAGATAAATAGTAAATTAAATTTAATATTAA
35674026 GATAATCACT
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
59 17 0.36
61 1 0.02
62 29 0.62
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (61 bp):
TTAAATTAATAAAATACTTACTACAAGATAAATAGTAAATTAAATTTAATATTAAATCTTT
Found at i:35676275 original size:18 final size:18
Alignment explanation
Indices: 35676232--35676275 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
35676222 ACACAATCCA
*
35676232 AACCCAAGTATCCAACCC
1 AACCCAATTATCCAACCC
35676250 AACCCAATTATCCAACCC
1 AACCCAATTATCCAACCC
35676268 AACCCAAT
1 AACCCAAT
35676276 CATAAAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.41, C:0.43, G:0.02, T:0.14
Consensus pattern (18 bp):
AACCCAATTATCCAACCC
Found at i:35676795 original size:19 final size:21
Alignment explanation
Indices: 35676748--35676800 Score: 56
Period size: 24 Copynumber: 2.5 Consensus size: 21
35676738 CTCGAAAAAG
35676748 TTTAATTGATGTAAAATGATTGCA
1 TTTAATTGATGT--AATGATT-CA
35676772 TTTAATTGATGT-ATGATT-A
1 TTTAATTGATGTAATGATTCA
*
35676791 TTTAAATGAT
1 TTTAATTGAT
35676801 TGATTTTCAC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 10 0.36
21 6 0.21
24 12 0.43
ACGTcount: A:0.36, C:0.02, G:0.15, T:0.47
Consensus pattern (21 bp):
TTTAATTGATGTAATGATTCA
Found at i:35679800 original size:27 final size:28
Alignment explanation
Indices: 35679770--35679829 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 28
35679760 ATGCAAAAAG
* *
35679770 AAAATTAAGGTTATAAAAAAAAT-TTAT
1 AAAAATAAGATTATAAAAAAAATGTTAT
*
35679797 AAAAATAATATTATAAAAAAAATGTTAT
1 AAAAATAAGATTATAAAAAAAATGTTAT
35679825 AAAAA
1 AAAAA
35679830 ATAATAGCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 20 0.69
28 9 0.31
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (28 bp):
AAAAATAAGATTATAAAAAAAATGTTAT
Found at i:35679801 original size:14 final size:14
Alignment explanation
Indices: 35679780--35679835 Score: 78
Period size: 14 Copynumber: 4.0 Consensus size: 14
35679770 AAAATTAAGG
35679780 TTATAAAAAAAAT-
1 TTATAAAAAAAATA
*
35679793 TTATAAAAATAATA
1 TTATAAAAAAAATA
*
35679807 TTATAAAAAAAATG
1 TTATAAAAAAAATA
35679821 TTATAAAAAATAATA
1 TTATAAAAAA-AATA
35679836 GCATATTATG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
13 12 0.32
14 22 0.59
15 3 0.08
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (14 bp):
TTATAAAAAAAATA
Found at i:35679829 original size:29 final size:27
Alignment explanation
Indices: 35679780--35679835 Score: 94
Period size: 27 Copynumber: 2.0 Consensus size: 27
35679770 AAAATTAAGG
35679780 TTATAAAAAAAATTTATAAAAATAATA
1 TTATAAAAAAAATTTATAAAAATAATA
35679807 TTATAAAAAAAATGTTATAAAAAATAATA
1 TTATAAAAAAAAT-TTAT-AAAAATAATA
35679836 GCATATTATG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 13 0.48
28 4 0.15
29 10 0.37
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (27 bp):
TTATAAAAAAAATTTATAAAAATAATA
Found at i:35686065 original size:50 final size:50
Alignment explanation
Indices: 35685990--35686088 Score: 171
Period size: 50 Copynumber: 2.0 Consensus size: 50
35685980 CTCAAGCTTT
35685990 CTTGGAATGCATATTTGTATATGATATGGAGACAGAGGAACAAGAGGTAA
1 CTTGGAATGCATATTTGTATATGATATGGAGACAGAGGAACAAGAGGTAA
* * *
35686040 CTTGGAATGCATATTTGTATGTGATATGGAGGCAGAGGAATAAGAGGTA
1 CTTGGAATGCATATTTGTATATGATATGGAGACAGAGGAACAAGAGGTA
35686089 TTTTGGTGTA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.35, C:0.07, G:0.30, T:0.27
Consensus pattern (50 bp):
CTTGGAATGCATATTTGTATATGATATGGAGACAGAGGAACAAGAGGTAA
Found at i:35691455 original size:72 final size:72
Alignment explanation
Indices: 35691338--35691698 Score: 706
Period size: 72 Copynumber: 5.0 Consensus size: 72
35691328 ACAGAATTTA
35691338 AAGCATATATTTGACTTCTAAATATACACTACAGAAATGTGTTATTAGCTGCACAGGTGTCATGA
1 AAGCATATATTTGACTTCTAAATATACACTACAGAAATGTGTTATTAGCTGCACAGGTGTCATGA
35691403 ACAAACT
66 ACAAACT
35691410 AAGCATATATTTGACTTCTAAATATACACTACAGAAATGTGTTATTAGCTGCACAGGTGTCATGA
1 AAGCATATATTTGACTTCTAAATATACACTACAGAAATGTGTTATTAGCTGCACAGGTGTCATGA
35691475 ACAAACT
66 ACAAACT
35691482 AAGCATATATTTGACTTCTAAATATACACTACAGAAATGTGTTATTAGCTGCACAGGTGTCATGA
1 AAGCATATATTTGACTTCTAAATATACACTACAGAAATGTGTTATTAGCTGCACAGGTGTCATGA
35691547 ACAAACT
66 ACAAACT
35691554 AAGCATATATTTGACTTCTAAATATACACTACAGAAATGTGTTATTAGCTGCACAGGTGTCATGA
1 AAGCATATATTTGACTTCTAAATATACACTACAGAAATGTGTTATTAGCTGCACAGGTGTCATGA
35691619 ACAAACT
66 ACAAACT
35691626 AAGCATATATTTGACTTCTAAATATACACTACAGAAATGTGTTATTAGCTGCACCAGGTGTCAT-
1 AAGCATATATTTGACTTCTAAATATACACTACAGAAATGTGTTATTAGCTGCA-CAGGTGTCATG
35691690 AACAAACT
65 AACAAACT
35691698 A
1 A
35691699 TCAGACCTAC
Statistics
Matches: 288, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
72 278 0.97
73 10 0.03
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (72 bp):
AAGCATATATTTGACTTCTAAATATACACTACAGAAATGTGTTATTAGCTGCACAGGTGTCATGA
ACAAACT
Found at i:35695198 original size:7 final size:7
Alignment explanation
Indices: 35695181--35695220 Score: 64
Period size: 7 Copynumber: 5.7 Consensus size: 7
35695171 TCATAACTTA
35695181 AAAAAAT
1 AAAAAAT
35695188 -AAAAAT
1 AAAAAAT
35695194 AAAAAAAT
1 -AAAAAAT
35695202 AAAAAAT
1 AAAAAAT
35695209 AAAAAAT
1 AAAAAAT
35695216 AAAAA
1 AAAAA
35695221 CAGAAGAAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 6 0.19
7 19 0.61
8 6 0.19
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:35697689 original size:78 final size:79
Alignment explanation
Indices: 35697589--35697747 Score: 302
Period size: 78 Copynumber: 2.0 Consensus size: 79
35697579 AAATCCCGTT
35697589 GGATTATTAATTTAGAAACTTAAAAACACGACGACCAGCTAAAGAAAACGCGAAAAAAAAAAAGT
1 GGATTATTAA-TTAGAAACTTAAAAACACGACGACCAGCTAAAGAAAACGCGAAAAAAAAAAAGT
35697654 AGGCAGCAAAAAGGG
65 AGGCAGCAAAAAGGG
35697669 GGATTATTAA-TAGAAACTTAAAAACACGACGACCAGCTAAAGAAAACGCGAAAAAAAAAAAGTA
1 GGATTATTAATTAGAAACTTAAAAACACGACGACCAGCTAAAGAAAACGCGAAAAAAAAAAAGTA
35697733 GGCAGCAAAAAGGG
66 GGCAGCAAAAAGGG
35697747 G
1 G
35697748 TTTTTGGTCA
Statistics
Matches: 79, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
78 69 0.87
80 10 0.13
ACGTcount: A:0.53, C:0.14, G:0.21, T:0.13
Consensus pattern (79 bp):
GGATTATTAATTAGAAACTTAAAAACACGACGACCAGCTAAAGAAAACGCGAAAAAAAAAAAGTA
GGCAGCAAAAAGGG
Found at i:35707368 original size:5 final size:5
Alignment explanation
Indices: 35707358--35707412 Score: 110
Period size: 5 Copynumber: 11.0 Consensus size: 5
35707348 GAATTAAGTA
35707358 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
35707408 TATAT
1 TATAT
35707413 CAAATAAATG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 50 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:35709499 original size:23 final size:21
Alignment explanation
Indices: 35709455--35709501 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 21
35709445 TTTGGGGTTT
* *
35709455 TTTTTGGATTGTGTTTTGTTG
1 TTTTTGGATTGTATTTTATTG
35709476 TTTTTGGACTTGTATCTTTATTG
1 TTTTTGGA-TTGTAT-TTTATTG
35709499 TTT
1 TTT
35709502 AGTTTTTGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 8 0.36
22 5 0.23
23 9 0.41
ACGTcount: A:0.09, C:0.04, G:0.21, T:0.66
Consensus pattern (21 bp):
TTTTTGGATTGTATTTTATTG
Found at i:35713437 original size:29 final size:29
Alignment explanation
Indices: 35713346--35713491 Score: 69
Period size: 29 Copynumber: 4.7 Consensus size: 29
35713336 TTTCATCATT
* *
35713346 CCCTTAAAAGTTTTTGAAATTTTCAATTAAG
1 CCCTT-AAATTTTTTAAAATTTT-AATTAAG
* ** **
35713377 TCCCTCCCAAATATTTTGGAAATTTTCTTTAAG
1 -CCCT--TAAAT-TTTTTAAAATTTTAATTAAG
35713410 CCCTTAAATTTTTTAAAATTTTAATTAA-
1 CCCTTAAATTTTTTAAAATTTTAATTAAG
* * * * * *
35713438 ACCTCAACTTTTTTTGAAAATTCTCATTAAA
1 CCCTTAA-ATTTTTT-AAAATTTTAATTAAG
*
35713469 CCCTCTAGATTTTTTGAAAATTT
1 CCCT-TAAATTTTTT-AAAATTT
35713492 AAGTTAGGCC
Statistics
Matches: 87, Mismatches: 20, Indels: 15
0.71 0.16 0.12
Matches are distributed among these distances:
28 5 0.06
29 21 0.24
30 16 0.18
31 16 0.18
32 9 0.10
33 8 0.09
34 12 0.14
ACGTcount: A:0.33, C:0.16, G:0.06, T:0.45
Consensus pattern (29 bp):
CCCTTAAATTTTTTAAAATTTTAATTAAG
Found at i:35713458 original size:30 final size:31
Alignment explanation
Indices: 35713356--35713491 Score: 93
Period size: 30 Copynumber: 4.4 Consensus size: 31
35713346 CCCTTAAAAG
*
35713356 TTTTTG-AAATTTTCAATTAAGTCCCTCCCAA-AT
1 TTTTTGAAAATTTT-AATTAA-ACCCT--CAACAT
* * ** * *
35713389 ATTTTGGAAATTTTCTTTAAGCCCTTAA-AT
1 TTTTTGAAAATTTTAATTAAACCCTCAACAT
*
35713419 TTTTT-AAAATTTTAATTAAA-CCTCAACTT
1 TTTTTGAAAATTTTAATTAAACCCTCAACAT
* * * *
35713448 TTTTTGAAAATTCTCATTAAACCCTCTAGAT
1 TTTTTGAAAATTTTAATTAAACCCTCAACAT
35713479 TTTTTGAAAATTT
1 TTTTTGAAAATTT
35713492 AAGTTAGGCC
Statistics
Matches: 81, Mismatches: 18, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
28 5 0.06
29 17 0.21
30 21 0.26
31 18 0.22
32 4 0.05
33 9 0.11
34 7 0.09
ACGTcount: A:0.32, C:0.15, G:0.06, T:0.46
Consensus pattern (31 bp):
TTTTTGAAAATTTTAATTAAACCCTCAACAT
Found at i:35719427 original size:18 final size:18
Alignment explanation
Indices: 35719392--35719427 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
35719382 TTATTATTAT
* *
35719392 TATTTTGGTTTTTTTTTG
1 TATTTTGGTTTCTGTTTG
35719410 TATTTTGGTTTCTGTTTG
1 TATTTTGGTTTCTGTTTG
35719428 GGCCCGGGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.06, C:0.03, G:0.19, T:0.72
Consensus pattern (18 bp):
TATTTTGGTTTCTGTTTG
Found at i:35719697 original size:44 final size:44
Alignment explanation
Indices: 35719609--35719727 Score: 139
Period size: 44 Copynumber: 2.7 Consensus size: 44
35719599 CTTCGATCCA
*
35719609 CTCCACTACAACTTCAGAGAAATAAGACTTGTAGTTTCAATCTG
1 CTCCACTACAACTTCAGGGAAATAAGACTTGTAGTTTCAATCTG
* * * * * * * *
35719653 CTCCGCTGCAACTTCAGGGAGATGAGATTTGTGGTTTTATTCTG
1 CTCCACTACAACTTCAGGGAAATAAGACTTGTAGTTTCAATCTG
* *
35719697 CTCCACTACAACGTCAGGGATATAAGACTTG
1 CTCCACTACAACTTCAGGGAAATAAGACTTG
35719728 CTATGGTAGA
Statistics
Matches: 60, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
44 60 1.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (44 bp):
CTCCACTACAACTTCAGGGAAATAAGACTTGTAGTTTCAATCTG
Found at i:35720080 original size:89 final size:89
Alignment explanation
Indices: 35719909--35720102 Score: 223
Period size: 89 Copynumber: 2.2 Consensus size: 89
35719899 CTGTAACTTT
** * *
35719909 AGGGAGATAAGGCTTGTAGCTTTAATTTGTTCCACTGCAACTTTAAGAAAATAAGATTCGCTGTC
1 AGGGAGATAAGGCTTGTAGCTTTAATTTACTCCACTGCAACTTCAAGAAAATAAGATTCGCTATC
*
35719974 TTCAATTTACTCTACTGCAACTGC
66 TTCAATTTACGCTACTGCAACTGC
* * *
35719998 AGGGAGATAAGGTTTGTGGCTTTAATTTACTCCACTGCAACTTCAATG-AGATAAGATTCGCTAT
1 AGGGAGATAAGGCTTGTAGCTTTAATTTACTCCACTGCAACTTCAA-GAAAATAAGATTCGCTAT
* **
35720062 GTTCAATCTGT-CGC-ACTGCAACTTT
65 CTTCAAT-T-TACGCTACTGCAACTGC
* *
35720087 AGGGAAATAAGACTTG
1 AGGGAGATAAGGCTTG
35720103 CTATGGTAGA
Statistics
Matches: 88, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
89 83 0.94
90 4 0.05
91 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.32
Consensus pattern (89 bp):
AGGGAGATAAGGCTTGTAGCTTTAATTTACTCCACTGCAACTTCAAGAAAATAAGATTCGCTATC
TTCAATTTACGCTACTGCAACTGC
Found at i:35720224 original size:45 final size:44
Alignment explanation
Indices: 35719803--35720280 Score: 209
Period size: 44 Copynumber: 10.7 Consensus size: 44
35719793 TTCGCTGCAA
* * * ** *
35719803 CTGCTCCACTACAACTTCAGGGAGATGAGGTTTATAGCTTTAAT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATTGCTATCTTTAAT
* * ** ** * *
35719847 CTGCTCTACTGTAACTTCAGAAAGATAAGATTTTTAAT-TTCAAC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATTGCT-ATCTTTAAT
* * * * *
35719891 CTGCTTCACTGTAACTTTAGGGAGATAAGGCTTG-TAGCTTTAAT
1 CTGCTCCACTGCAACTTCAGGGAGATAA-GATTGCTATCTTTAAT
* * * * * * * *
35719935 TTGTTCCACTGCAACTTTAAGAAAATAAGATTCGCTGTCTTCAAT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATT-GCTATCTTTAAT
* * * * * **
35719980 TTACTCTACTGCAACTGCAGGGAGATAAGGTTTG-TGGCTTTAAT
1 CTGCTCCACTGCAACTTCAGGGAGATAA-GATTGCTATCTTTAAT
* * ** * *
35720024 TTACTCCACTGCAACTTCAATGAGATAAGATTCGCTATGTTCAAT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATT-GCTATCTTTAAT
* * *
35720069 CTG-TCGCACTGCAACTTTAGGGAAATAAGACTTGCTATGGTAGATTTAAT
1 CTGCTC-CACTGCAACTTCAGGGAGATAAGA-TTGCTA---T--CTTTAAT
* * * *
35720119 CCGAC-CTACTACAACCTT-AGAGG-TATAAGATT-C-ATCGTTTTAAT
1 CTG-CTCCACTGCAA-CTTCAG-GGAGATAAGATTGCTATC--TTTAAT
* * *
35720163 CCGCTCCATTGCAACTTCAGAGAGATAAGATTCGCTATCTTTAAT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATT-GCTATCTTTAAT
* * * * * *
35720208 CTGTTCCACTGTAACTTTAGGGAGATAAGATTGGTATCTTCAAC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATTGCTATCTTTAAT
* *
35720252 CTGCTCGACTGCAACTTCAGGGGGATAAG
1 CTGCTCCACTGCAACTTCAGGGAGATAAG
35720281 GTTTGTGACT
Statistics
Matches: 323, Mismatches: 84, Indels: 54
0.70 0.18 0.12
Matches are distributed among these distances:
43 12 0.04
44 175 0.54
45 95 0.29
46 6 0.02
47 4 0.01
48 2 0.01
49 2 0.01
50 21 0.07
51 6 0.02
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.33
Consensus pattern (44 bp):
CTGCTCCACTGCAACTTCAGGGAGATAAGATTGCTATCTTTAAT
Found at i:35722338 original size:50 final size:49
Alignment explanation
Indices: 35722212--35722405 Score: 146
Period size: 50 Copynumber: 4.0 Consensus size: 49
35722202 CTGATAATAC
* * * * * *
35722212 ATGCCAAAGCTATGTCCCAGGCATAGTCTTACATGGGATGTTTTC-TGT-
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATTTG
* * *
35722260 ACTGCCAATGTCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATTG
1 A-TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCAT-TTG
* * * ** *
35722311 GTGCCCATGCCATGTCCCAGACATGGTCTTA-AGGGGGACCTCTCATCTCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACA-TGGGAGTTCTCAT-TTG
* * *
35722361 ATGCCAACGCCATGTCCCAGACATGGTCCTACGTGGGA--TCTCATT
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATT
35722406 CCCTTAATGT
Statistics
Matches: 115, Mismatches: 25, Indels: 13
0.75 0.16 0.08
Matches are distributed among these distances:
47 1 0.01
48 12 0.10
49 32 0.28
50 70 0.61
ACGTcount: A:0.22, C:0.26, G:0.23, T:0.29
Consensus pattern (49 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATTTG
Found at i:35725188 original size:45 final size:45
Alignment explanation
Indices: 35725124--35725304 Score: 362
Period size: 45 Copynumber: 4.0 Consensus size: 45
35725114 AACACTTCCA
35725124 TGTACATAAGGGCAAATGCTTCATAAATTTCCTTCCAAAATTCTT
1 TGTACATAAGGGCAAATGCTTCATAAATTTCCTTCCAAAATTCTT
35725169 TGTACATAAGGGCAAATGCTTCATAAATTTCCTTCCAAAATTCTT
1 TGTACATAAGGGCAAATGCTTCATAAATTTCCTTCCAAAATTCTT
35725214 TGTACATAAGGGCAAATGCTTCATAAATTTCCTTCCAAAATTCTT
1 TGTACATAAGGGCAAATGCTTCATAAATTTCCTTCCAAAATTCTT
35725259 TGTACATAAGGGCAAATGCTTCATAAATTTCCTTCCAAAATTCTT
1 TGTACATAAGGGCAAATGCTTCATAAATTTCCTTCCAAAATTCTT
35725304 T
1 T
35725305 CTTCAGATAT
Statistics
Matches: 136, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 136 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (45 bp):
TGTACATAAGGGCAAATGCTTCATAAATTTCCTTCCAAAATTCTT
Found at i:35726127 original size:35 final size:35
Alignment explanation
Indices: 35726081--35726187 Score: 214
Period size: 35 Copynumber: 3.1 Consensus size: 35
35726071 GTCAGACACT
35726081 ACTACAGGATTGGTTGGATTGTCCCCCGGATTGGA
1 ACTACAGGATTGGTTGGATTGTCCCCCGGATTGGA
35726116 ACTACAGGATTGGTTGGATTGTCCCCCGGATTGGA
1 ACTACAGGATTGGTTGGATTGTCCCCCGGATTGGA
35726151 ACTACAGGATTGGTTGGATTGTCCCCCGGATTGGA
1 ACTACAGGATTGGTTGGATTGTCCCCCGGATTGGA
35726186 AC
1 AC
35726188 CTGGGCCTGT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 72 1.00
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.28
Consensus pattern (35 bp):
ACTACAGGATTGGTTGGATTGTCCCCCGGATTGGA
Found at i:35729878 original size:3 final size:3
Alignment explanation
Indices: 35729872--35729897 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
35729862 TGGACTGTTG
35729872 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
35729898 TTGGTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:35738938 original size:24 final size:26
Alignment explanation
Indices: 35738883--35738938 Score: 62
Period size: 24 Copynumber: 2.2 Consensus size: 26
35738873 AAATTTTATC
*
35738883 ATTTAATATAATAAATAATTTAAAAT
1 ATTTATTATAATAAATAATTTAAAAT
* * *
35738909 AATTATTA-AATAAATCA-TTAAAGT
1 ATTTATTATAATAAATAATTTAAAAT
35738933 ATTTAT
1 ATTTAT
35738939 CTGAATTTTA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
24 11 0.44
25 8 0.32
26 6 0.24
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (26 bp):
ATTTATTATAATAAATAATTTAAAAT
Found at i:35741461 original size:15 final size:16
Alignment explanation
Indices: 35741434--35741471 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
35741424 AGCAAAAAGA
35741434 TTCATAA-AACATT-T
1 TTCATAACAACATTAT
35741448 TTCATAACAACATTAT
1 TTCATAACAACATTAT
35741464 TT-ATAACA
1 TTCATAACA
35741472 CCCCTAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.32
15 12 0.55
16 3 0.14
ACGTcount: A:0.45, C:0.16, G:0.00, T:0.39
Consensus pattern (16 bp):
TTCATAACAACATTAT
Found at i:35744848 original size:65 final size:65
Alignment explanation
Indices: 35744759--35744893 Score: 216
Period size: 65 Copynumber: 2.1 Consensus size: 65
35744749 ATTACCGTAG
* * * *
35744759 CTCTTTGTGAGCGTCATGTTTTATGATCGGTTGTGATCCTGCATATATTGCGGACACAAATGTAA
1 CTCTTTGTGAGCGTCATGTTTTATGATCGGTTGTGATCCTACATATATTGCAGACACAAACGCAA
* *
35744824 CTCTTTGTGAGTGTCATGTTTTATGATCGGTTGTGATCCTACATATGTTGCAGACACAAACGCAA
1 CTCTTTGTGAGCGTCATGTTTTATGATCGGTTGTGATCCTACATATATTGCAGACACAAACGCAA
35744889 CTCTT
1 CTCTT
35744894 GATTAATGCC
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.23, C:0.19, G:0.21, T:0.37
Consensus pattern (65 bp):
CTCTTTGTGAGCGTCATGTTTTATGATCGGTTGTGATCCTACATATATTGCAGACACAAACGCAA
Found at i:35744994 original size:25 final size:25
Alignment explanation
Indices: 35744960--35745075 Score: 82
Period size: 25 Copynumber: 4.7 Consensus size: 25
35744950 AAAATTTCTA
*
35744960 TGTGAACTTCCTGATTATGGCTCTG
1 TGTGAGCTTCCTGATTATGGCTCTG
*
35744985 TGTGAGCTTCCT-ATTATATAGC-CTG
1 TGTGAGCTTCCTGA-T-TATGGCTCTG
* * * *
35745010 -GATAAGCTTCCTGA--AAGGTTCTT
1 TG-TGAGCTTCCTGATTATGGCTCTG
* *
35745033 TGTGAGCTTCCCGATTAATGGCTCTT
1 TGTGAGCTTCCTGATT-ATGGCTCTG
35745059 TGTGAGCTTCCT-ATTAT
1 TGTGAGCTTCCTGATTAT
35745076 ATGGCTCGAG
Statistics
Matches: 70, Mismatches: 12, Indels: 19
0.69 0.12 0.19
Matches are distributed among these distances:
22 2 0.03
23 12 0.17
24 5 0.07
25 27 0.39
26 24 0.34
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.40
Consensus pattern (25 bp):
TGTGAGCTTCCTGATTATGGCTCTG
Found at i:35745061 original size:26 final size:26
Alignment explanation
Indices: 35744894--35745082 Score: 88
Period size: 26 Copynumber: 7.5 Consensus size: 26
35744884 CGCAACTCTT
* * *
35744894 GATTAATGCCTCTTCGTGAGTTTCCC
1 GATTAATGGCTCTTTGTGAGCTTCCC
* * * **
35744920 GTTTAAAGGCTCTTCGTGAGCTTCTT
1 GATTAATGGCTCTTTGTGAGCTTCCC
**** * * *
35744946 GATTAAAATTTCTATGTGAACTTCCT
1 GATTAATGGCTCTTTGTGAGCTTCCC
*
35744972 GATT-ATGGCTCTGTGTGAGCTT-CC
1 GATTAATGGCTCTTTGTGAGCTTCCC
* * * * *
35744996 TATTATATAGC-C-TGGATAAGCTTCCT
1 GATTA-ATGGCTCTTTG-TGAGCTTCCC
*
35745022 GA--AA-GGTTCTTTGTGAGCTTCCC
1 GATTAATGGCTCTTTGTGAGCTTCCC
35745045 GATTAATGGCTCTTTGTGAGCTT-CC
1 GATTAATGGCTCTTTGTGAGCTTCCC
*
35745070 TATTATATGGCTC
1 GATTA-ATGGCTC
35745083 GAGAGAGGAT
Statistics
Matches: 118, Mismatches: 35, Indels: 20
0.68 0.20 0.12
Matches are distributed among these distances:
22 1 0.01
23 12 0.10
24 8 0.07
25 27 0.23
26 70 0.59
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.40
Consensus pattern (26 bp):
GATTAATGGCTCTTTGTGAGCTTCCC
Found at i:35756419 original size:30 final size:31
Alignment explanation
Indices: 35756380--35756439 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
35756370 GGAGGTGGGA
35756380 TGGGAAGGGAATAAAAGTTTTAAGGGAAAAG
1 TGGGAAGGGAATAAAAGTTTTAAGGGAAAAG
* * **
35756411 TGGG-AGGGAGTAAAATTTTTTGGGGAAAA
1 TGGGAAGGGAATAAAAGTTTTAAGGGAAAA
35756440 TAAAAGTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.40, C:0.00, G:0.37, T:0.23
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAGTTTTAAGGGAAAAG
Found at i:35756751 original size:9 final size:9
Alignment explanation
Indices: 35756734--35756764 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
35756724 TCGAGTTGAT
35756734 TCGAATAAC
1 TCGAATAAC
*
35756743 TCGATTAAC
1 TCGAATAAC
35756752 TCGAATAAC
1 TCGAATAAC
35756761 TCGA
1 TCGA
35756765 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:35757908 original size:12 final size:12
Alignment explanation
Indices: 35757891--35757921 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
35757881 AAATAATATC
35757891 ATAATAATCCTA
1 ATAATAATCCTA
35757903 ATAATAATCCTA
1 ATAATAATCCTA
*
35757915 AAAATAA
1 ATAATAA
35757922 AATTTGAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.58, C:0.13, G:0.00, T:0.29
Consensus pattern (12 bp):
ATAATAATCCTA
Found at i:35763737 original size:3 final size:3
Alignment explanation
Indices: 35763729--35763767 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
35763719 ACTATCGATC
35763729 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
35763768 NNNNNNNNNN
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:35764982 original size:31 final size:31
Alignment explanation
Indices: 35764946--35765015 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
35764936 TGTGACGTTT
* * *
35764946 AAATTCTTTGAA-ATAAGAACGTTTTTTTTTA
1 AAATTCTTTCAAGATAA-AAAGTTTTCTTTTA
*
35764977 AAATTCATTCAAGATAAAAAGTTTTCTTTTA
1 AAATTCTTTCAAGATAAAAAGTTTTCTTTTA
35765008 AAA-TCTTT
1 AAATTCTTT
35765016 TCAACTTTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
30 4 0.12
31 25 0.76
32 4 0.12
ACGTcount: A:0.39, C:0.09, G:0.07, T:0.46
Consensus pattern (31 bp):
AAATTCTTTCAAGATAAAAAGTTTTCTTTTA
Found at i:35765038 original size:100 final size:101
Alignment explanation
Indices: 35764924--35765124 Score: 395
Period size: 100 Copynumber: 2.0 Consensus size: 101
35764914 TGTTGCGCCC
35764924 TAACTTACTGGGTGTGACGTTTAAATTCTTTGAAATAAGAACGTTTTTTTTTAAAATTCATTCAA
1 TAACTTACTGGGTGTGACGTTTAAATTCTTTGAAATAAGAACGTTTTTTTTTAAAATTCATTCAA
35764989 GATAAAAAGTTTTCTTTTAAAATCTTTTCAACTTTT
66 GATAAAAAGTTTTCTTTTAAAATCTTTTCAACTTTT
35765025 TAACTTACT-GGTGTGACGTTTAAATTCTTTGAAATAAGAACGTTTTTTTTTAAAATTCATTCAA
1 TAACTTACTGGGTGTGACGTTTAAATTCTTTGAAATAAGAACGTTTTTTTTTAAAATTCATTCAA
35765089 GATAAAAAGTTTTCTTTTAAAATCTTTTCAACTTTT
66 GATAAAAAGTTTTCTTTTAAAATCTTTTCAACTTTT
35765125 CGACACCAAG
Statistics
Matches: 100, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
100 91 0.91
101 9 0.09
ACGTcount: A:0.33, C:0.11, G:0.10, T:0.46
Consensus pattern (101 bp):
TAACTTACTGGGTGTGACGTTTAAATTCTTTGAAATAAGAACGTTTTTTTTTAAAATTCATTCAA
GATAAAAAGTTTTCTTTTAAAATCTTTTCAACTTTT
Found at i:35765082 original size:31 final size:31
Alignment explanation
Indices: 35765046--35765115 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
35765036 TGTGACGTTT
* * *
35765046 AAATTCTTTGAA-ATAAGAACGTTTTTTTTTA
1 AAATTCTTTCAAGATAA-AAAGTTTTCTTTTA
*
35765077 AAATTCATTCAAGATAAAAAGTTTTCTTTTA
1 AAATTCTTTCAAGATAAAAAGTTTTCTTTTA
35765108 AAA-TCTTT
1 AAATTCTTT
35765116 TCAACTTTTC
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
30 4 0.12
31 25 0.76
32 4 0.12
ACGTcount: A:0.39, C:0.09, G:0.07, T:0.46
Consensus pattern (31 bp):
AAATTCTTTCAAGATAAAAAGTTTTCTTTTA
Found at i:35769908 original size:6 final size:6
Alignment explanation
Indices: 35769862--35769898 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
35769852 GGGGGGGGGG
35769862 GAACAA GAACAA GAACAA GAACAA GAACAA GAA-AA GA
1 GAACAA GAACAA GAACAA GAACAA GAACAA GAACAA GA
35769899 GAAAAAGAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 4 0.13
6 27 0.87
ACGTcount: A:0.68, C:0.14, G:0.19, T:0.00
Consensus pattern (6 bp):
GAACAA
Found at i:35772235 original size:30 final size:29
Alignment explanation
Indices: 35772185--35772241 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 29
35772175 ATCGATACTA
*
35772185 AGGGTCTCATGGGCGGTATATTTACCTGC
1 AGGGTCTCATGGGCGATATATTTACCTGC
35772214 AGGGTCTCATGGGGCGATATATTTACCT
1 AGGGTCTCAT-GGGCGATATATTTACCT
35772242 ATTGTTAGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 10 0.38
30 16 0.62
ACGTcount: A:0.19, C:0.19, G:0.30, T:0.32
Consensus pattern (29 bp):
AGGGTCTCATGGGCGATATATTTACCTGC
Found at i:35789445 original size:41 final size:41
Alignment explanation
Indices: 35789388--35789505 Score: 177
Period size: 41 Copynumber: 2.9 Consensus size: 41
35789378 TGAGTTTTTG
* *
35789388 GGGCCTTTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTAAAGAAGCGCCGCTAATACTA
35789429 GGGCCTTTAGCGGCGTTTTTAAAGAAGCGCCGCTAATACTA
1 GGGCCTTTAGCGGCGTTTTTAAAGAAGCGCCGCTAATACTA
*
35789470 GAGG-CTTTAGCGGCGTTTTTGGAA-AAGCGCCGCTAA
1 G-GGCCTTTAGCGGCGTTTTT-AAAGAAGCGCCGCTAA
35789506 AAACATTTTA
Statistics
Matches: 72, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
41 68 0.94
42 4 0.06
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (41 bp):
GGGCCTTTAGCGGCGTTTTTAAAGAAGCGCCGCTAATACTA
Found at i:35789908 original size:50 final size:50
Alignment explanation
Indices: 35789848--35789959 Score: 224
Period size: 50 Copynumber: 2.2 Consensus size: 50
35789838 GAGTTACTAT
35789848 TTTAAGGTTTAGGGAGTATGGGTTTAGGGATTATGGTTTAAGGGTTGAGA
1 TTTAAGGTTTAGGGAGTATGGGTTTAGGGATTATGGTTTAAGGGTTGAGA
35789898 TTTAAGGTTTAGGGAGTATGGGTTTAGGGATTATGGTTTAAGGGTTGAGA
1 TTTAAGGTTTAGGGAGTATGGGTTTAGGGATTATGGTTTAAGGGTTGAGA
35789948 TTTAAGGTTTAG
1 TTTAAGGTTTAG
35789960 AGGTTAGAAG
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 62 1.00
ACGTcount: A:0.24, C:0.00, G:0.37, T:0.39
Consensus pattern (50 bp):
TTTAAGGTTTAGGGAGTATGGGTTTAGGGATTATGGTTTAAGGGTTGAGA
Found at i:35789941 original size:15 final size:14
Alignment explanation
Indices: 35789853--35789937 Score: 62
Period size: 15 Copynumber: 5.4 Consensus size: 14
35789843 ACTATTTTAA
*
35789853 GGTTTAGGGAGTAT
1 GGTTTAGGGATTAT
35789867 GGGTTTAGGGATTAT
1 -GGTTTAGGGATTAT
*
35789882 GGTTTAAGGGTTGAGATTTAA
1 GGTTT-A--G--G-GA-TTAT
*
35789903 GGTTTAGGGAGTAT
1 GGTTTAGGGATTAT
35789917 GGGTTTAGGGATTAT
1 -GGTTTAGGGATTAT
35789932 GGTTTA
1 GGTTTA
35789938 AGGGTTGAGA
Statistics
Matches: 57, Mismatches: 5, Indels: 17
0.72 0.06 0.22
Matches are distributed among these distances:
14 13 0.23
15 29 0.51
16 1 0.02
17 1 0.02
18 1 0.02
19 1 0.02
20 3 0.05
21 8 0.14
ACGTcount: A:0.22, C:0.00, G:0.39, T:0.39
Consensus pattern (14 bp):
GGTTTAGGGATTAT
Found at i:35789981 original size:23 final size:23
Alignment explanation
Indices: 35789949--35790035 Score: 72
Period size: 23 Copynumber: 3.8 Consensus size: 23
35789939 GGGTTGAGAT
35789949 TTAA-GGTTTAGAGGTTAGAAGG
1 TTAAGGGTTTAGAGGTTAGAAGG
* *
35789971 TTAAGGGTTTAGGGGTTAGAGGG
1 TTAAGGGTTTAGAGGTTAGAAGG
* * *
35789994 TT-AGCAGTTTAGGGGTTA-AACG
1 TTAAG-GGTTTAGAGGTTAGAAGG
* *
35790016 TTAGGGGTTAAGAGAGTTAG
1 TTAAGGGTTTAGAG-GTTAG
35790036 GGATTTAAGG
Statistics
Matches: 51, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
22 16 0.31
23 35 0.69
ACGTcount: A:0.28, C:0.02, G:0.39, T:0.31
Consensus pattern (23 bp):
TTAAGGGTTTAGAGGTTAGAAGG
Found at i:35789997 original size:15 final size:15
Alignment explanation
Indices: 35789951--35790025 Score: 55
Period size: 15 Copynumber: 4.9 Consensus size: 15
35789941 GTTGAGATTT
*
35789951 AAGGTTTAGAGGTTAG
1 AAGG-TTAGGGGTTAG
*
35789967 AAGGTTAAGGGTTTAG
1 AAGGTT-AGGGGTTAG
*
35789983 -GGGTTAGAGGGTTAG
1 AAGGTTAG-GGGTTAG
* *
35789998 CAGTTTAGGGGTTA-
1 AAGGTTAGGGGTTAG
*
35790012 AACGTTAGGGGTTA
1 AAGGTTAGGGGTTA
35790026 AGAGAGTTAG
Statistics
Matches: 47, Mismatches: 9, Indels: 8
0.73 0.14 0.12
Matches are distributed among these distances:
14 13 0.28
15 18 0.38
16 16 0.34
ACGTcount: A:0.27, C:0.03, G:0.40, T:0.31
Consensus pattern (15 bp):
AAGGTTAGGGGTTAG
Found at i:35790261 original size:14 final size:14
Alignment explanation
Indices: 35790225--35790269 Score: 63
Period size: 14 Copynumber: 3.1 Consensus size: 14
35790215 CATATTTTAA
*
35790225 GGATTAGGGAGTAT
1 GGATTAGGGATTAT
*
35790239 GGATCTAGGAATTAT
1 GGAT-TAGGGATTAT
35790254 GGATTAGGGATTAT
1 GGATTAGGGATTAT
35790268 GG
1 GG
35790270 TTTAAGGGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
14 15 0.56
15 12 0.44
ACGTcount: A:0.29, C:0.02, G:0.38, T:0.31
Consensus pattern (14 bp):
GGATTAGGGATTAT
Found at i:35790354 original size:29 final size:29
Alignment explanation
Indices: 35790271--35790355 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
35790261 GGATTATGGT
* *
35790271 TTAAGGGTT-GGGATTTAAGGTTTAGCGG
1 TTAAGAGTTAGGGATTTAAGGTTTAGGGG
* *
35790299 TTAAGTGTTTAGGG-TTTAGACG-TTAGGGG
1 TTAAGAG-TTAGGGATTTA-AGGTTTAGGGG
35790328 TTAAGAGTTAGGGATTTAAGGTTTAGGG
1 TTAAGAGTTAGGGATTTAAGGTTTAGGG
35790356 ATTCAAAGGT
Statistics
Matches: 47, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
28 14 0.30
29 28 0.60
30 5 0.11
ACGTcount: A:0.24, C:0.02, G:0.38, T:0.36
Consensus pattern (29 bp):
TTAAGAGTTAGGGATTTAAGGTTTAGGGG
Found at i:35790358 original size:15 final size:14
Alignment explanation
Indices: 35790268--35790355 Score: 67
Period size: 14 Copynumber: 6.1 Consensus size: 14
35790258 TAGGGATTAT
*
35790268 GGTTTAAGGGTT-G
1 GGTTTAAGGTTTAG
35790281 GGATTTAAGGTTTAG
1 GG-TTTAAGGTTTAG
35790296 CGG-TTAAGTGTTTAG
1 -GGTTTAAG-GTTTAG
*
35790311 GGTTTAGACG-TTAG
1 GGTTTA-AGGTTTAG
*
35790325 GGGTTAAGAG-TTAG
1 GGTTTAAG-GTTTAG
35790339 GGATTTAAGGTTTAG
1 GG-TTTAAGGTTTAG
35790354 GG
1 GG
35790356 ATTCAAAGGT
Statistics
Matches: 61, Mismatches: 5, Indels: 16
0.74 0.06 0.20
Matches are distributed among these distances:
13 3 0.05
14 33 0.54
15 22 0.36
16 3 0.05
ACGTcount: A:0.23, C:0.02, G:0.39, T:0.36
Consensus pattern (14 bp):
GGTTTAAGGTTTAG
Found at i:35790398 original size:303 final size:303
Alignment explanation
Indices: 35790000--35790750 Score: 1330
Period size: 303 Copynumber: 2.5 Consensus size: 303
35789990 AGGGTTAGCA
*
35790000 GTTTAGGGGTTAAACGTTAGGGGTTAAGAGAGTTAGGGATTTAAGGTTTAGGGATTCAAAGGTCG
1 GTTTAGGGGTTAGACGTTAGGGGTT-A-AGAGTTAGGGATTTAAGGTTTAGGGATTCAAAGGTCG
35790065 AGTTAGGATTTTGGGCGTTTAGATTAATTTTTTAAATTTATATTTTAAATATGTTCTTATATAAT
64 AGTTAGGATTTTGGGCGTTTAGATTAATTTTTTAAATTTATATTTTAAATATGTTCTTATATAAT
35790130 TGTAAAAGAGATAATAATAAATTTGTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTTAAGAT
129 TGTAAAAGAGATAATAATAAATTTGTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTTAAGAT
35790195 TTAAGACCGGTTTAGGAGCTCATATTTTAAGGATTAGGGAGTATGGATCTAGGAATTATGGATTA
194 TTAAGACCGGTTTAGGAGCTCATATTTTAAGGATTAGGGAGTATGGATCTAGGAATTATGGATTA
*
35790260 GGGATTATGGTTTAAGGGTTGGGATTTAAGGTTTAGCGGTTAAGT
259 GGGATTATGGTTTAAGGGTTGGGATTTAAGGTTTAGCGGTTAAGG
*
35790305 GTTTAGGGTTTAGACGTTAGGGGTTAAGAGTTAGGGATTTAAGGTTTAGGGATTCAAAGGTCGAG
1 GTTTAGGGGTTAGACGTTAGGGGTTAAGAGTTAGGGATTTAAGGTTTAGGGATTCAAAGGTCGAG
35790370 TTAGGATTTTGGGCGTTTAGATTAATTTTTTAAATTTATATTTTAAATATGTTCTTATATAATTG
66 TTAGGATTTTGGGCGTTTAGATTAATTTTTTAAATTTATATTTTAAATATGTTCTTATATAATTG
35790435 TAAAAGAGATAATAATAAATTTGTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTTAAGATTT
131 TAAAAGAGATAATAATAAATTTGTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTTAAGATTT
35790500 AAGACCGGTTTAGGAGCTCATATTTTAAGGATTAGGGAGTATGGATCTAGGAATTATGGATTAGG
196 AAGACCGGTTTAGGAGCTCATATTTTAAGGATTAGGGAGTATGGATCTAGGAATTATGGATTAGG
35790565 GATTATGGTTTAAGGGTTGGGATTTAAGGTTTAGCGGTTAAGG
261 GATTATGGTTTAAGGGTTGGGATTTAAGGTTTAGCGGTTAAGG
* * *
35790608 GTTTAGGGGTTAGACGTTAGGGGTTAAGAGTTAGGGATTTAAGGTTTAGGGATTC-AGGGGCTGG
1 GTTTAGGGGTTAGACGTTAGGGGTTAAGAGTTAGGGATTTAAGGTTTAGGGATTCAAAGGTC-GA
* *
35790672 GTTAAGG-TTTT--GAGTTTAGATTAATTATTTTTTTAATTTATATTTTAAATATGTTCTTATAT
65 GTT-AGGATTTTGGGCGTTTAGATT-A--ATTTTTTAAATTTATATTTTAAATATGTTCTTATAT
*
35790734 AATTGTAAAATAGATAA
126 AATTGTAAAAGAGATAA
35790751 ATTATGGTTT
Statistics
Matches: 431, Mismatches: 10, Indels: 11
0.95 0.02 0.02
Matches are distributed among these distances:
301 10 0.02
302 5 0.01
303 338 0.78
304 55 0.13
305 23 0.05
ACGTcount: A:0.30, C:0.03, G:0.26, T:0.40
Consensus pattern (303 bp):
GTTTAGGGGTTAGACGTTAGGGGTTAAGAGTTAGGGATTTAAGGTTTAGGGATTCAAAGGTCGAG
TTAGGATTTTGGGCGTTTAGATTAATTTTTTAAATTTATATTTTAAATATGTTCTTATATAATTG
TAAAAGAGATAATAATAAATTTGTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTTAAGATTT
AAGACCGGTTTAGGAGCTCATATTTTAAGGATTAGGGAGTATGGATCTAGGAATTATGGATTAGG
GATTATGGTTTAAGGGTTGGGATTTAAGGTTTAGCGGTTAAGG
Found at i:35790564 original size:14 final size:14
Alignment explanation
Indices: 35790528--35790572 Score: 63
Period size: 14 Copynumber: 3.1 Consensus size: 14
35790518 CATATTTTAA
*
35790528 GGATTAGGGAGTAT
1 GGATTAGGGATTAT
*
35790542 GGATCTAGGAATTAT
1 GGAT-TAGGGATTAT
35790557 GGATTAGGGATTAT
1 GGATTAGGGATTAT
35790571 GG
1 GG
35790573 TTTAAGGGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
14 15 0.56
15 12 0.44
ACGTcount: A:0.29, C:0.02, G:0.38, T:0.31
Consensus pattern (14 bp):
GGATTAGGGATTAT
Found at i:35790661 original size:15 final size:14
Alignment explanation
Indices: 35790571--35790658 Score: 58
Period size: 14 Copynumber: 6.1 Consensus size: 14
35790561 TAGGGATTAT
*
35790571 GGTTTAAGGGTT-G
1 GGTTTAAGGTTTAG
35790584 GGATTTAAGGTTTAG
1 GG-TTTAAGGTTTAG
35790599 CGG-TTAAGGGTTTAG
1 -GGTTTAA-GGTTTAG
* *
35790614 GGGTTAGACG-TTAG
1 GGTTTA-AGGTTTAG
*
35790628 GGGTTAAGAG-TTAG
1 GGTTTAAG-GTTTAG
35790642 GGATTTAAGGTTTAG
1 GG-TTTAAGGTTTAG
35790657 GG
1 GG
35790659 ATTCAGGGGC
Statistics
Matches: 62, Mismatches: 4, Indels: 16
0.76 0.05 0.20
Matches are distributed among these distances:
13 3 0.05
14 33 0.53
15 23 0.37
16 3 0.05
ACGTcount: A:0.23, C:0.02, G:0.41, T:0.34
Consensus pattern (14 bp):
GGTTTAAGGTTTAG
Done.