Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43060996
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2186021 characters in sequence are not A, C, G, or T
File 22 of 128
Found at i:6600587 original size:21 final size:21
Alignment explanation
Indices: 6600563--6600612 Score: 100
Period size: 21 Copynumber: 2.4 Consensus size: 21
6600553 TTCTGCTTTG
6600563 CTCTGCTTCCCTCACTGCCGC
1 CTCTGCTTCCCTCACTGCCGC
6600584 CTCTGCTTCCCTCACTGCCGC
1 CTCTGCTTCCCTCACTGCCGC
6600605 CTCTGCTT
1 CTCTGCTT
6600613 TAAGTTGTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.04, C:0.50, G:0.14, T:0.32
Consensus pattern (21 bp):
CTCTGCTTCCCTCACTGCCGC
Found at i:6606100 original size:9 final size:9
Alignment explanation
Indices: 6606083--6606440 Score: 146
Period size: 9 Copynumber: 40.4 Consensus size: 9
6606073 TATGTATTAA
*
6606083 GTAAATTAT
1 GTAAGTTAT
6606092 GTAAGTTAT
1 GTAAGTTAT
*
6606101 GTACGTGTA-
1 GTAAGT-TAT
6606110 -TAAGTTAT
1 GTAAGTTAT
6606118 GTAAGTTAT
1 GTAAGTTAT
*
6606127 GT-A-TTAA
1 GTAAGTTAT
*
6606134 GTAAGCTAT
1 GTAAGTTAT
6606143 GTAAGTTAT
1 GTAAGTTAT
6606152 GTAAGTTAT
1 GTAAGTTAT
** *
6606161 CAAAGTAAT
1 GTAAGTTAT
*
6606170 GTATGTTAT
1 GTAAGTTAT
*
6606179 TTAAG-T-T
1 GTAAGTTAT
6606186 GTAAGTTAT
1 GTAAGTTAT
*
6606195 -TATGTATTAT
1 GTAAG--TTAT
*
6606205 GTAAGTTAA
1 GTAAGTTAT
* *
6606214 G-ATGGATTAC
1 GTA-AG-TTAT
6606224 GTAAGTTAT
1 GTAAGTTAT
6606233 GTAAGTTAAAT
1 GTAAGTT--AT
6606244 GT-A-TTAT
1 GTAAGTTAT
6606251 GTAAG-T-T
1 GTAAGTTAT
6606258 GTAAGTTAATAAT
1 GTAAG-T--T-AT
*
6606271 GTACGTTATGT
1 GTAAGTTA--T
* *
6606282 GTAATATTAA
1 GTAA-GTTAT
** *
6606292 AAAAATTAT
1 GTAAGTTAT
*
6606301 GTAAGTTGT
1 GTAAGTTAT
*
6606310 GT-A-TAAT
1 GTAAGTTAT
6606317 GTAAGTTAT
1 GTAAGTTAT
*
6606326 GTAAGTAAT
1 GTAAGTTAT
*
6606335 GT--CTTAT
1 GTAAGTTAT
* *
6606342 ATAAGTTGT
1 GTAAGTTAT
*
6606351 GT-A-TAAT
1 GTAAGTTAT
*
6606358 GTTAGTTAT
1 GTAAGTTAT
*
6606367 -CAGAGTTAT
1 GTA-AGTTAT
*
6606376 G-CA-TTAT
1 GTAAGTTAT
6606383 GTAAGTTAT
1 GTAAGTTAT
6606392 GTAAGTTAT
1 GTAAGTTAT
*
6606401 GTAAGTTGT
1 GTAAGTTAT
6606410 GTAAGTTAT
1 GTAAGTTAT
*
6606419 TTAAGTTAT
1 GTAAGTTAT
*
6606428 GTAAGTAAT
1 GTAAGTTAT
6606437 GTAA
1 GTAA
6606441 TATATACTTA
Statistics
Matches: 256, Mismatches: 57, Indels: 72
0.66 0.15 0.19
Matches are distributed among these distances:
7 39 0.15
8 20 0.08
9 160 0.62
10 15 0.06
11 13 0.05
12 4 0.02
13 5 0.02
ACGTcount: A:0.35, C:0.02, G:0.20, T:0.43
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:6606103 original size:25 final size:25
Alignment explanation
Indices: 6606072--6606154 Score: 107
Period size: 25 Copynumber: 3.3 Consensus size: 25
6606062 TGATATATAT
*
6606072 TTATGTATTAAGTAAATTATGTAAG
1 TTATGTATTAAGTAAGTTATGTAAG
6606097 TTATGTACGTGT-A-TAAGTTATGTAAG
1 TTATGTA--T-TAAGTAAGTTATGTAAG
*
6606123 TTATGTATTAAGTAAGCTATGTAAG
1 TTATGTATTAAGTAAGTTATGTAAG
6606148 TTATGTA
1 TTATGTA
6606155 AGTTATCAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
23 1 0.02
24 2 0.04
25 26 0.51
26 19 0.37
27 2 0.04
28 1 0.02
ACGTcount: A:0.35, C:0.02, G:0.19, T:0.43
Consensus pattern (25 bp):
TTATGTATTAAGTAAGTTATGTAAG
Found at i:6606166 original size:18 final size:16
Alignment explanation
Indices: 6606093--6606160 Score: 57
Period size: 17 Copynumber: 4.1 Consensus size: 16
6606083 GTAAATTATG
*
6606093 TAAGTTATGTACGTGTA
1 TAAGTTATGTAAGT-TA
6606110 TAAGTTATGTAAGTTA
1 TAAGTTATGTAAGTTA
* * *
6606126 TGTA-TTAAGTAAGCTATG
1 T-AAGTTATGTAAG-T-TA
6606144 TAAGTTATGTAAGTTA
1 TAAGTTATGTAAGTTA
6606160 T
1 T
6606161 CAAAGTAATG
Statistics
Matches: 40, Mismatches: 7, Indels: 9
0.71 0.12 0.16
Matches are distributed among these distances:
16 13 0.32
17 17 0.43
18 10 0.25
ACGTcount: A:0.34, C:0.03, G:0.21, T:0.43
Consensus pattern (16 bp):
TAAGTTATGTAAGTTA
Found at i:6606207 original size:19 final size:19
Alignment explanation
Indices: 6606185--6606233 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
6606175 TTATTTAAGT
* *
6606185 TGTAAGTTATTATGTATTA
1 TGTAAGTTATGATGGATTA
*
6606204 TGTAAGTTAAGATGGATTA
1 TGTAAGTTATGATGGATTA
*
6606223 CGTAAGTTATG
1 TGTAAGTTATG
6606234 TAAGTTAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.33, C:0.02, G:0.22, T:0.43
Consensus pattern (19 bp):
TGTAAGTTATGATGGATTA
Found at i:6606237 original size:28 final size:27
Alignment explanation
Indices: 6606201--6606266 Score: 91
Period size: 28 Copynumber: 2.5 Consensus size: 27
6606191 TTATTATGTA
6606201 TTATGTAAGTTAAGATGGATTACGTAAG
1 TTATGTAAGTTAA-ATGGATTACGTAAG
* *
6606229 TTATGTAAGTTAAATGTATTATGTAAG
1 TTATGTAAGTTAAATGGATTACGTAAG
6606256 -T-TGTAAGTTAA
1 TTATGTAAGTTAA
6606267 TAATGTACGT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
25 10 0.28
26 1 0.03
27 12 0.33
28 13 0.36
ACGTcount: A:0.36, C:0.02, G:0.21, T:0.41
Consensus pattern (27 bp):
TTATGTAAGTTAAATGGATTACGTAAG
Found at i:6606388 original size:41 final size:42
Alignment explanation
Indices: 6606296--6606394 Score: 123
Period size: 41 Copynumber: 2.4 Consensus size: 42
6606286 TATTAAAAAA
*
6606296 ATTATGTAAGTTGTGTATAATGTAAGTTATGTAAGTAATGTC
1 ATTATGTAAGTTGTGTATAATGTAAGTTATGCAAGTAATGTC
* * *
6606338 -TTATATAAGTTGTGTATAATGTTAGTTAT-CAGAGTTATG-C
1 ATTATGTAAGTTGTGTATAATGTAAGTTATGCA-AGTAATGTC
*
6606378 ATTATGTAAGTTATGTA
1 ATTATGTAAGTTGTGTA
6606395 AGTTATGTAA
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
40 2 0.04
41 47 0.96
ACGTcount: A:0.32, C:0.03, G:0.20, T:0.44
Consensus pattern (42 bp):
ATTATGTAAGTTGTGTATAATGTAAGTTATGCAAGTAATGTC
Found at i:6606439 original size:27 final size:27
Alignment explanation
Indices: 6606318--6606440 Score: 98
Period size: 25 Copynumber: 4.8 Consensus size: 27
6606308 GTGTATAATG
* *
6606318 TAAGTTATGTAAGTAATGT--CTTATA
1 TAAGTTATGTAAGTAATGTAAGTTATT
* *
6606343 TAAGTTGTGT-A-TAATGTTAGTTA-T
1 TAAGTTATGTAAGTAATGTAAGTTATT
* * * *
6606367 CAGAGTTATG-CA-TTATGTAAGTTATG
1 TA-AGTTATGTAAGTAATGTAAGTTATT
**
6606393 TAAGTTATGTAAGTTGTGTAAGTTATT
1 TAAGTTATGTAAGTAATGTAAGTTATT
6606420 TAAGTTATGTAAGTAATGTAA
1 TAAGTTATGTAAGTAATGTAA
6606441 TATATACTTA
Statistics
Matches: 77, Mismatches: 14, Indels: 12
0.75 0.14 0.12
Matches are distributed among these distances:
23 6 0.08
24 2 0.03
25 36 0.47
26 2 0.03
27 31 0.40
ACGTcount: A:0.33, C:0.02, G:0.20, T:0.44
Consensus pattern (27 bp):
TAAGTTATGTAAGTAATGTAAGTTATT
Found at i:6606477 original size:13 final size:13
Alignment explanation
Indices: 6606459--6606557 Score: 101
Period size: 13 Copynumber: 7.5 Consensus size: 13
6606449 TAAATTTTAG
6606459 TAAGTAATATATT
1 TAAGTAATATATT
*
6606472 TAAGTAATAAATT
1 TAAGTAATATATT
** *
6606485 TAACCAA-ATTTT
1 TAAGTAATATATT
*
6606497 AGTAAGTAATGTATT
1 --TAAGTAATATATT
*
6606512 TAAGTAATTTATT
1 TAAGTAATATATT
6606525 TAAGTAATATATT
1 TAAGTAATATATT
*
6606538 CAAGTAATATATT
1 TAAGTAATATATT
*
6606551 AAAGTAA
1 TAAGTAA
6606558 ATTTTAGTAA
Statistics
Matches: 70, Mismatches: 13, Indels: 6
0.79 0.15 0.07
Matches are distributed among these distances:
12 3 0.04
13 59 0.84
14 5 0.07
15 3 0.04
ACGTcount: A:0.46, C:0.03, G:0.09, T:0.41
Consensus pattern (13 bp):
TAAGTAATATATT
Found at i:6606501 original size:66 final size:65
Alignment explanation
Indices: 6606431--6606567 Score: 152
Period size: 66 Copynumber: 2.1 Consensus size: 65
6606421 AAGTTATGTA
* * *
6606431 AGTAATGTAATATATACTTAA-ATTTTA-GTAAGTAATATATTTAAGTAATAAATTTAACCAAAT
1 AGTAA-GTAATATAT--TTAAGAATTTATGTAAGTAATATATTCAAGTAATAAATTAAACCAAAT
6606494 TTT
63 TTT
* * * **
6606497 AGTAAGTAATGTATTTAAGTAATTTATTTAAGTAATATATTCAAGTAATATATTAAAGTAAATTT
1 AGTAAGTAATATATTTAAG-AATTTATGTAAGTAATATATTCAAGTAATAAATTAAACCAAATTT
6606562 T
65 T
6606563 AGTAA
1 AGTAA
6606568 AAAATATGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
63 4 0.07
65 13 0.22
66 43 0.72
ACGTcount: A:0.45, C:0.03, G:0.09, T:0.42
Consensus pattern (65 bp):
AGTAAGTAATATATTTAAGAATTTATGTAAGTAATATATTCAAGTAATAAATTAAACCAAATTTT
Found at i:6606584 original size:66 final size:66
Alignment explanation
Indices: 6606459--6606584 Score: 162
Period size: 66 Copynumber: 1.9 Consensus size: 66
6606449 TAAATTTTAG
* * ** *
6606459 TAAGTAATATATTTAAGTAATAAATTTAACCAAATTTTAGTAAGTAATGTATTTAAGTAATTTAT
1 TAAGTAATATATTCAAGTAATAAATTAAACCAAATTTTAGTAAAAAATATATTTAAGTAATTTAT
6606524 T
66 T
* ** * *
6606525 TAAGTAATATATTCAAGTAATATATTAAAGTAAATTTTAGTAAAAAATATGTTTTAGTAA
1 TAAGTAATATATTCAAGTAATAAATTAAACCAAATTTTAGTAAAAAATATATTTAAGTAA
6606585 GTAATGTAAG
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
66 50 1.00
ACGTcount: A:0.46, C:0.02, G:0.10, T:0.42
Consensus pattern (66 bp):
TAAGTAATATATTCAAGTAATAAATTAAACCAAATTTTAGTAAAAAATATATTTAAGTAATTTAT
T
Found at i:6606628 original size:13 final size:13
Alignment explanation
Indices: 6606604--6606640 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
6606594 GTCATGTAAA
6606604 ATATACTTAAAAAT
1 ATATA-TTAAAAAT
6606618 ATATATTAAAAAT
1 ATATATTAAAAAT
*
6606631 ATATGTTAAA
1 ATATATTAAA
6606641 GAAAAAGAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 17 0.77
14 5 0.23
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.38
Consensus pattern (13 bp):
ATATATTAAAAAT
Found at i:6607838 original size:13 final size:13
Alignment explanation
Indices: 6607822--6607862 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
6607812 CATTTACTAT
6607822 ATTCATTAAGAAA
1 ATTCATTAAGAAA
6607835 ATTCATTCAA-AAA
1 ATTCATT-AAGAAA
*
6607848 ATTCATTTAGAAA
1 ATTCATTAAGAAA
6607861 AT
1 AT
6607863 CTCGCAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
12 1 0.04
13 22 0.88
14 2 0.08
ACGTcount: A:0.51, C:0.10, G:0.05, T:0.34
Consensus pattern (13 bp):
ATTCATTAAGAAA
Found at i:6607993 original size:60 final size:60
Alignment explanation
Indices: 6607903--6608026 Score: 205
Period size: 60 Copynumber: 2.1 Consensus size: 60
6607893 CACAAAATTC
* * *
6607903 ATTC-GGGCAACTGCTAAATAAACAATTTATACCTAAATCCCTCATACACTGTAACCAAA
1 ATTCAGGGCAACTACTAAATAAACAAATTATACCTAAATCCCTCACACACTGTAACCAAA
*
6607962 ATTCAGGGCAACTACTAAATAAACAAATTATACCTAAATCCCTCACACACTGTAACCGAA
1 ATTCAGGGCAACTACTAAATAAACAAATTATACCTAAATCCCTCACACACTGTAACCAAA
6608022 ATTCA
1 ATTCA
6608027 CAAAATTCAC
Statistics
Matches: 60, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
59 4 0.07
60 56 0.93
ACGTcount: A:0.42, C:0.26, G:0.08, T:0.24
Consensus pattern (60 bp):
ATTCAGGGCAACTACTAAATAAACAAATTATACCTAAATCCCTCACACACTGTAACCAAA
Found at i:6609180 original size:233 final size:233
Alignment explanation
Indices: 6608762--6609229 Score: 654
Period size: 233 Copynumber: 2.0 Consensus size: 233
6608752 AAATAAATAA
* * *** * *
6608762 TTCTAAAATTTTTCTAAGTTAAAAATCGTTTACGGAAACGGCGTTGTTTAGCCATTACTTTAATA
1 TTCTAAAATTTTTCTAAGTTAAAAATCGTTCACAGAAACGGCACCGTTTACCCATTACTCTAATA
* * *
6608827 CCCTTTTGCGGCATTTTCGGTACAAACGCCGCTATTGCTTACACATTTCCAATGTTTTCCTAAAA
66 CCCTTTTGCGGCATTTACGGTAAAAACGCCGCTATTGCTTACACATTTCCAACGTTTTCCTAAAA
* * * *
6608892 ACGCGACTAAATATTAAATTTGTAAAGAGGAACGGCGCCGTTTTGTTAGTCTCAAATTGCATTTT
131 ACGCCACTAAATATTAAAGTTGTAAAGAGGAACGGCGCCGTTTTGTTACTCTCAAATTGCATTAT
*
6608957 TTCTGGCATTTTACATAAAAACGCCACTAATACTTGAT
196 TTCTGGCATTTTACATAAAAACGCCACTAATACTTAAT
6608995 TTCTAAAATTTTTCTAAGTTAAAAATC-TTACACAGAAACGGCACCGTTTACCCATTACTCTAAT
1 TTCTAAAATTTTTCTAAGTTAAAAATCGTT-CACAGAAACGGCACCGTTTACCCATTACTCTAAT
* * * * **
6609059 ATCCTTTTGCGGCGTTTACTGTAAAAACGCCGCTATTGCTTCCACATTTCCGGCGTTTTCCTAAA
65 ACCCTTTTGCGGCATTTACGGTAAAAACGCCGCTATTGCTTACACATTTCCAACGTTTTCCTAAA
* *
6609124 ACCGCCACTAAATATTAAAGTTGTAAAG-GGAAACGGTGCCGATTTT-TTACTCTCAAATTGCAT
130 AACGCCACTAAATATTAAAGTTGTAAAGAGG-AACGGCGCCG-TTTTGTTACTCTCAAATTGCAT
* **
6609187 TATTTCTGGCTTTTTATGTAAAAACGCCACTAATACTTAAT
193 TATTTCTGGCATTTTACATAAAAACGCCACTAATACTTAAT
6609228 TT
1 TT
6609230 ACTTTAACCC
Statistics
Matches: 206, Mismatches: 26, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
232 4 0.02
233 198 0.96
234 4 0.02
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.36
Consensus pattern (233 bp):
TTCTAAAATTTTTCTAAGTTAAAAATCGTTCACAGAAACGGCACCGTTTACCCATTACTCTAATA
CCCTTTTGCGGCATTTACGGTAAAAACGCCGCTATTGCTTACACATTTCCAACGTTTTCCTAAAA
ACGCCACTAAATATTAAAGTTGTAAAGAGGAACGGCGCCGTTTTGTTACTCTCAAATTGCATTAT
TTCTGGCATTTTACATAAAAACGCCACTAATACTTAAT
Found at i:6609488 original size:270 final size:270
Alignment explanation
Indices: 6608995--6609561 Score: 771
Period size: 270 Copynumber: 2.1 Consensus size: 270
6608985 AATACTTGAT
* * *
6608995 TTCTAAAATTTTTCTAAGTTAAAAATCTTACACAGAAACGGCACCGTTTACCCATTACTCTAATA
1 TTCTAAAATTTTTCTAAGTTAAAAATCATACACAGAAACGGCACCATTTACACATTACTCTAATA
* * * *
6609060 TCCTTTTGCGGCGTTTACTGTAAAAACGCCGCTATTGCTTCCACATTTCCGGCGTTTTCCTAAAA
66 CCCTTTTGCGGCGTTTACTATAAAAACGCCGCTATTGCTTCCAAAGTTCCGGCGTTTTCCTAAAA
* * * ** * * *
6609125 CCGCCACTAAATATTAAAGTTGTAAAGGGAAACGGTGCCGATTTTTTACTCTCAAATTGCATTAT
131 ACGCCACTAAATATTAAAATCGTAAACAGAAACAGCGCCGATTTTCTACTCTCAAATTGCATTAT
* ** *
6609190 TTCTGGCTTTTTATGTAAAAACGCCACTAATACTTAATTTACTTTAACCCAAACGGTGATGTTTT
196 TTCTGGCGTTTTATGTAAAAACGCCACTAATACTTAACGTACTTTAACCCAAACGGTGACGTTTT
6609255 AAATAAATAA
261 AAATAAATAA
** * * * *
6609265 TTCTAAAATTTTTCTAAGTTAAAAATCATGTACAGAAACGGCGCCATTTAGACATTATTTTAATA
1 TTCTAAAATTTTTCTAAGTTAAAAATCATACACAGAAACGGCACCATTTACACATTACTCTAATA
* * *
6609330 CCCTTTTGTGGCGTTTACTATACAAACGCCGCTATTGCTTTCAAAGTTCCGGCGTTTTGCC-AAA
66 CCCTTTTGCGGCGTTTACTATAAAAACGCCGCTATTGCTTCCAAAGTTCCGGCGTTTT-CCTAAA
6609394 AACGCCAC-AAATATTTAAAATCGTAAACAGAAACAGCGCCG-TTTTGCTACTCTCAAATTGCAT
130 AACGCCACTAAATA-TTAAAATCGTAAACAGAAACAGCGCCGATTTT-CTACTCTCAAATTGCAT
* * * *
6609457 TGTTTCTGGCGTTTTATGTTAAAATGCCACTAATACTTAACGTACTTTAAGCCAAACGGTGACGT
193 TATTTCTGGCGTTTTATGTAAAAACGCCACTAATACTTAACGTACTTTAACCCAAACGGTGACGT
*
6609522 TTTAAGTAAATAA
258 TTTAAATAAATAA
* *
6609535 TTCTAAACTTTTTATAAGTTAAAAATC
1 TTCTAAAATTTTTCTAAGTTAAAAATC
6609562 GTGGAGAGAA
Statistics
Matches: 259, Mismatches: 35, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
269 9 0.03
270 248 0.96
271 2 0.01
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.35
Consensus pattern (270 bp):
TTCTAAAATTTTTCTAAGTTAAAAATCATACACAGAAACGGCACCATTTACACATTACTCTAATA
CCCTTTTGCGGCGTTTACTATAAAAACGCCGCTATTGCTTCCAAAGTTCCGGCGTTTTCCTAAAA
ACGCCACTAAATATTAAAATCGTAAACAGAAACAGCGCCGATTTTCTACTCTCAAATTGCATTAT
TTCTGGCGTTTTATGTAAAAACGCCACTAATACTTAACGTACTTTAACCCAAACGGTGACGTTTT
AAATAAATAA
Found at i:6609597 original size:270 final size:270
Alignment explanation
Indices: 6608995--6609676 Score: 733
Period size: 270 Copynumber: 2.5 Consensus size: 270
6608985 AATACTTGAT
* * ** ** * * * ** * *
6608995 TTCTAAAATTTTTCTAAGTTAAAAATCTTACACAGAAACGGCACCGTTTACCCATTACTCTAATA
1 TTCTAAAATTTTTATAAGTTAAAAATCATGGACAGAAACAACGCCATTTACACAAAATTTTAATA
* * * *
6609060 TCCTTTTGCGGCGTTTACTGTAAAAACGCCGCTATTGCTTCCACATTTCCGGCGTTTTCCTAAAA
66 CCCTTTTGCGGCGTTTACTATAAAAACGCCGCTATTGCTTCCAAAGTTCCGGCGTTTTCCTAAAA
* * * ** * * *
6609125 CCGCCACTAAATATTAAAGTTGTAAAGGGAAACGGTGCCGATTTTTTACTCTCAAATTGCATTAT
131 ACGCCACTAAATATTAAAATCGTAAACAGAAACAGCGCCGATTTTCTACTCTCAAATTGCATTAT
* ** *
6609190 TTCTGGCTTTTTATGTAAAAACGCCACTAATACTTAATTTACTTTAACCCAAACGGTGATGTTTT
196 TTCTGGCGTTTTATGTAAAAACGCCACTAATACTTAACGTACTTTAACCCAAACGGTGACGTTTT
6609255 AAATAAATAA
261 AAATAAATAA
* * ** * **
6609265 TTCTAAAATTTTTCTAAGTTAAAAATCATGTACAGAAACGGCGCCATTTAGACATTATTTTAATA
1 TTCTAAAATTTTTATAAGTTAAAAATCATGGACAGAAACAACGCCATTTACACAAAATTTTAATA
* * *
6609330 CCCTTTTGTGGCGTTTACTATACAAACGCCGCTATTGCTTTCAAAGTTCCGGCGTTTTGCC-AAA
66 CCCTTTTGCGGCGTTTACTATAAAAACGCCGCTATTGCTTCCAAAGTTCCGGCGTTTT-CCTAAA
6609394 AACGCCAC-AAATATTTAAAATCGTAAACAGAAACAGCGCCG-TTTTGCTACTCTCAAATTGCAT
130 AACGCCACTAAATA-TTAAAATCGTAAACAGAAACAGCGCCGATTTT-CTACTCTCAAATTGCAT
* * * *
6609457 TGTTTCTGGCGTTTTATGTTAAAATGCCACTAATACTTAACGTACTTTAAGCCAAACGGTGACGT
193 TATTTCTGGCGTTTTATGTAAAAACGCCACTAATACTTAACGTACTTTAACCCAAACGGTGACGT
*
6609522 TTTAAGTAAATAA
258 TTTAAATAAATAA
* * * * * * *
6609535 TTCTAAACTTTTTATAAGTTAAAAATCGTGGAGAGAAACAACGTCGTTTACTCAAAATTTTAAGA
1 TTCTAAAATTTTTATAAGTTAAAAATCATGGACAGAAACAACGCCATTTACACAAAATTTTAATA
* * * * * * * * * **
6609600 CACTTTTGCGACGTTT-CTTGTAAAAATGCCACTAATGCATCCAATATTTGCGGCGTTTTCAAAA
66 CCCTTTTGCGGCGTTTAC-TATAAAAACGCCGCTATTGCTTCCAA-AGTTCCGGCGTTTTCCTAA
6609664 AAACGCCACTAAA
129 AAACGCCACTAAA
6609677 AGTTTAACTA
Statistics
Matches: 345, Mismatches: 60, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
269 10 0.03
270 307 0.89
271 25 0.07
272 3 0.01
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.34
Consensus pattern (270 bp):
TTCTAAAATTTTTATAAGTTAAAAATCATGGACAGAAACAACGCCATTTACACAAAATTTTAATA
CCCTTTTGCGGCGTTTACTATAAAAACGCCGCTATTGCTTCCAAAGTTCCGGCGTTTTCCTAAAA
ACGCCACTAAATATTAAAATCGTAAACAGAAACAGCGCCGATTTTCTACTCTCAAATTGCATTAT
TTCTGGCGTTTTATGTAAAAACGCCACTAATACTTAACGTACTTTAACCCAAACGGTGACGTTTT
AAATAAATAA
Found at i:6610040 original size:15 final size:15
Alignment explanation
Indices: 6610020--6610069 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
6610010 CCTAAATCAT
6610020 TAACCCCTTAACCCC
1 TAACCCCTTAACCCC
** *
6610035 TAA-CCCTTAAATCA
1 TAACCCCTTAACCCC
*
6610049 TAAACCCTTAACCCC
1 TAACCCCTTAACCCC
6610064 TAACCC
1 TAACCC
6610070 TTATATCCCA
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
14 11 0.41
15 16 0.59
ACGTcount: A:0.34, C:0.44, G:0.00, T:0.22
Consensus pattern (15 bp):
TAACCCCTTAACCCC
Found at i:6610043 original size:14 final size:14
Alignment explanation
Indices: 6610024--6610072 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
6610014 AATCATTAAC
6610024 CCCTTAACCCCTAA
1 CCCTTAACCCCTAA
** *
6610038 CCCTTAAATCATAAA
1 CCCTTAACCCCT-AA
6610053 CCCTTAACCCCTAA
1 CCCTTAACCCCTAA
6610067 CCCTTA
1 CCCTTA
6610073 TATCCCAAAC
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
14 17 0.61
15 11 0.39
ACGTcount: A:0.33, C:0.43, G:0.00, T:0.24
Consensus pattern (14 bp):
CCCTTAACCCCTAA
Found at i:6610066 original size:29 final size:30
Alignment explanation
Indices: 6610012--6610072 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 30
6610002 TCCTAAATCC
*
6610012 TAAATCATTAACCCCTTAACCCCTAACCCT
1 TAAATCATTAAACCCTTAACCCCTAACCCT
6610042 TAAATCA-TAAACCCTTAACCCCTAACCCT
1 TAAATCATTAAACCCTTAACCCCTAACCCT
6610071 TA
1 TA
6610073 TATCCCAAAC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 23 0.77
30 7 0.23
ACGTcount: A:0.36, C:0.38, G:0.00, T:0.26
Consensus pattern (30 bp):
TAAATCATTAAACCCTTAACCCCTAACCCT
Found at i:6610082 original size:29 final size:29
Alignment explanation
Indices: 6610024--6610085 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 29
6610014 AATCATTAAC
*
6610024 CCCTTAACCCCTAACCCTTAAATCATAAA
1 CCCTTAACCCCTAACCCTTAAATCACAAA
* *
6610053 CCCTTAACCCCTAACCCTTATATCCCAAA
1 CCCTTAACCCCTAACCCTTAAATCACAAA
6610082 CCCT
1 CCCT
6610086 AAATCCATAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.32, C:0.44, G:0.00, T:0.24
Consensus pattern (29 bp):
CCCTTAACCCCTAACCCTTAAATCACAAA
Found at i:6610085 original size:15 final size:14
Alignment explanation
Indices: 6610024--6610091 Score: 55
Period size: 15 Copynumber: 4.7 Consensus size: 14
6610014 AATCATTAAC
* *
6610024 CCCTTAACCCCTAA
1 CCCTTAATCCCAAA
**
6610038 CCCTTAAATCATAAA
1 CCCTT-AATCCCAAA
* *
6610053 CCCTTAACCCCTAA
1 CCCTTAATCCCAAA
6610067 CCCTTATATCCCAAA
1 CCCTTA-ATCCCAAA
*
6610082 CCCTAAATCC
1 CCCTTAATCC
6610092 ATACCCCCTA
Statistics
Matches: 41, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
14 20 0.49
15 21 0.51
ACGTcount: A:0.34, C:0.43, G:0.00, T:0.24
Consensus pattern (14 bp):
CCCTTAATCCCAAA
Found at i:6611359 original size:42 final size:41
Alignment explanation
Indices: 6611241--6611367 Score: 137
Period size: 41 Copynumber: 3.1 Consensus size: 41
6611231 GTGTTTGCGA
* * * * *
6611241 CGCTTCATCAAAAATGCCGCTAAAACCCCTAGAATTAGTGG
1 CGCTTCATAAAAAACGCCGCTAAAACCCCAAGCATTAGCGG
** ** *
6611282 CGAATCATAAAAAACGCCGCTAAAAGTCTAAGCATTAGCGG
1 CGCTTCATAAAAAACGCCGCTAAAACCCCAAGCATTAGCGG
* *
6611323 CGCTTCATGAAAAACGCCGCTAAAAACCCCGAGCATTAGCGG
1 CGCTTCATAAAAAACGCCGCT-AAAACCCCAAGCATTAGCGG
6611365 CGC
1 CGC
6611368 ATATTTATAA
Statistics
Matches: 68, Mismatches: 17, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
41 49 0.72
42 19 0.28
ACGTcount: A:0.35, C:0.28, G:0.20, T:0.17
Consensus pattern (41 bp):
CGCTTCATAAAAAACGCCGCTAAAACCCCAAGCATTAGCGG
Found at i:6611696 original size:123 final size:122
Alignment explanation
Indices: 6611432--6611759 Score: 388
Period size: 123 Copynumber: 2.7 Consensus size: 122
6611422 CCGCTAATTC
* * * * *
6611432 CCCCCAAAAGGTCACCAAACGACGCCGTTGGCTTTTATTATGTGCAGCGTTTTTTCAAAAAACGC
1 CCCCCGAAAGGCCACCAAACGACGCCGTTGGCTTTTATTATTTGCGGCGTTTTTCCAAAAAACGC
* * * *
6611497 CACTAATGGTTATTTTTACGGCGATTTTAAAGAAACGCTGCTAATGGTCCACTAAAT
66 CACTAATGATTATTTTTACGACGATTTTAAAGAAACGCAGCTAATGCTCCACTAAAT
* * * * *
6611554 CCCCCGAAAGGGCATCAAACGACGCCGTTGGCTTTTAATATTTGCGGCGTTTTCCCCAAAAACGC
1 CCCCCGAAAGGCCACCAAACGACGCCGTTGGCTTTTATTATTTGCGGCGTTTTTCCAAAAAACGC
* * ** * *
6611619 CACTAATGATTACTTTTTTCGATGATTTTAGTGTAACGCAGCTGATGCTCCACTAAAT
66 CACTAATGATTA-TTTTTACGACGATTTTAAAGAAACGCAGCTAATGCTCCACTAAAT
** * * * *
6611677 CCCCCGAAAGGCCACCAAACGACGTTGTTGGGTTTTATTATTTTGCGGCGTTTTTGCTAAAAATG
1 CCCCCGAAAGGCCACCAAACGACGCCGTTGGCTTTTATTA-TTTGCGGCGTTTTTCCAAAAAACG
6611742 CCACTAAT-ACTTATTTTT
65 CCACTAATGA-TTATTTTT
6611760 TGCGGCGTTT
Statistics
Matches: 174, Mismatches: 29, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
122 67 0.39
123 76 0.44
124 31 0.18
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (122 bp):
CCCCCGAAAGGCCACCAAACGACGCCGTTGGCTTTTATTATTTGCGGCGTTTTTCCAAAAAACGC
CACTAATGATTATTTTTACGACGATTTTAAAGAAACGCAGCTAATGCTCCACTAAAT
Found at i:6613559 original size:20 final size:19
Alignment explanation
Indices: 6613536--6613585 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
6613526 ATAGAAATAC
*
6613536 AAAAATATTTAAAATTAGAA
1 AAAAATATTAAAAATT-GAA
*
6613556 AAAAATA-TAAAAATTGTA
1 AAAAATATTAAAAATTGAA
6613574 AAAAATA-TAAAA
1 AAAAATATTAAAA
6613586 TATAGAGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 14 0.50
19 7 0.25
20 7 0.25
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.26
Consensus pattern (19 bp):
AAAAATATTAAAAATTGAA
Found at i:6613566 original size:18 final size:18
Alignment explanation
Indices: 6613545--6613591 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
6613535 CAAAAATATT
6613545 TAAAATTAGAAAAAAATA
1 TAAAATTAGAAAAAAATA
*
6613563 TAAAAATT-GTAAAAAATA
1 T-AAAATTAGAAAAAAATA
6613581 TAAAATATAGA
1 TAAAAT-TAGA
6613592 GAAATATAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
17 5 0.21
18 12 0.50
19 7 0.29
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (18 bp):
TAAAATTAGAAAAAAATA
Found at i:6613749 original size:10 final size:11
Alignment explanation
Indices: 6613723--6613747 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
6613713 TTTCTATAAC
6613723 TTTTATTGATT
1 TTTTATTGATT
6613734 TTTTATTGATT
1 TTTTATTGATT
6613745 TTT
1 TTT
6613748 ATCATTTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (11 bp):
TTTTATTGATT
Found at i:6615862 original size:85 final size:85
Alignment explanation
Indices: 6615719--6615974 Score: 512
Period size: 85 Copynumber: 3.0 Consensus size: 85
6615709 ATCAATAACT
6615719 CCCAAATGCTAGAAATCGAAAAGCAAACTCTACCAAAATTATAATTTATTTGGAATAATTAATCT
1 CCCAAATGCTAGAAATCGAAAAGCAAACTCTACCAAAATTATAATTTATTTGGAATAATTAATCT
6615784 CACTAAATTTTGATATAGTA
66 CACTAAATTTTGATATAGTA
6615804 CCCAAATGCTAGAAATCGAAAAGCAAACTCTACCAAAATTATAATTTATTTGGAATAATTAATCT
1 CCCAAATGCTAGAAATCGAAAAGCAAACTCTACCAAAATTATAATTTATTTGGAATAATTAATCT
6615869 CACTAAATTTTGATATAGTA
66 CACTAAATTTTGATATAGTA
6615889 CCCAAATGCTAGAAATCGAAAAGCAAACTCTACCAAAATTATAATTTATTTGGAATAATTAATCT
1 CCCAAATGCTAGAAATCGAAAAGCAAACTCTACCAAAATTATAATTTATTTGGAATAATTAATCT
6615954 CACTAAATTTTGATATAGTA
66 CACTAAATTTTGATATAGTA
6615974 C
1 C
6615975 TGACACTTTA
Statistics
Matches: 171, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 171 1.00
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (85 bp):
CCCAAATGCTAGAAATCGAAAAGCAAACTCTACCAAAATTATAATTTATTTGGAATAATTAATCT
CACTAAATTTTGATATAGTA
Found at i:6625259 original size:22 final size:22
Alignment explanation
Indices: 6625233--6625302 Score: 65
Period size: 22 Copynumber: 3.2 Consensus size: 22
6625223 ACCGATCTAA
*
6625233 TTTTAAAGATTTAATAGAACAT
1 TTTTAAAGATTTAACAGAACAT
* *
6625255 TTTTAGAAG--TTAACA-ATCTAA
1 TTTTA-AAGATTTAACAGAAC-AT
*
6625276 TTCTAAAGATTTAACAGAACAT
1 TTTTAAAGATTTAACAGAACAT
6625298 TTTTA
1 TTTTA
6625303 GAAGTTAACA
Statistics
Matches: 36, Mismatches: 7, Indels: 10
0.68 0.13 0.19
Matches are distributed among these distances:
20 5 0.14
21 10 0.28
22 16 0.44
23 5 0.14
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.40
Consensus pattern (22 bp):
TTTTAAAGATTTAACAGAACAT
Found at i:6625267 original size:21 final size:21
Alignment explanation
Indices: 6625243--6625312 Score: 63
Period size: 21 Copynumber: 3.3 Consensus size: 21
6625233 TTTTAAAGAT
*
6625243 TTAATAGAACATTTTTAGAAG
1 TTAACAGAACATTTTTAGAAG
* * *
6625264 TTAACA-ATCTAATTCTA-AAG
1 TTAACAGAAC-ATTTTTAGAAG
6625284 ATTTAACAGAACATTTTTAGAAG
1 --TTAACAGAACATTTTTAGAAG
6625307 TTAACA
1 TTAACA
6625313 TTTTGTTTAT
Statistics
Matches: 37, Mismatches: 7, Indels: 10
0.69 0.13 0.19
Matches are distributed among these distances:
20 5 0.14
21 16 0.43
22 11 0.30
23 5 0.14
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.36
Consensus pattern (21 bp):
TTAACAGAACATTTTTAGAAG
Found at i:6625275 original size:43 final size:43
Alignment explanation
Indices: 6625227--6625312 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
6625217 TTTATCACCG
* *
6625227 ATCTAATTTTAAAGATTTAATAGAACATTTTTAGAAGTTAACA
1 ATCTAATTCTAAAGATTTAACAGAACATTTTTAGAAGTTAACA
6625270 ATCTAATTCTAAAGATTTAACAGAACATTTTTAGAAGTTAACA
1 ATCTAATTCTAAAGATTTAACAGAACATTTTTAGAAGTTAACA
6625313 TTTTGTTTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.37
Consensus pattern (43 bp):
ATCTAATTCTAAAGATTTAACAGAACATTTTTAGAAGTTAACA
Found at i:6626473 original size:22 final size:22
Alignment explanation
Indices: 6626429--6626470 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
6626419 CCTTTCATTT
*
6626429 TTCTATTATTCTCTCTTGTTTA
1 TTCTATAATTCTCTCTTGTTTA
6626451 TTCTATAATTCTCT-TTGTTT
1 TTCTATAATTCTCTCTTGTTT
6626471 TATAATAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.14, C:0.17, G:0.05, T:0.64
Consensus pattern (22 bp):
TTCTATAATTCTCTCTTGTTTA
Found at i:6626503 original size:19 final size:19
Alignment explanation
Indices: 6626470--6626534 Score: 64
Period size: 21 Copynumber: 3.4 Consensus size: 19
6626460 TCTCTTTGTT
6626470 TTATAATA-A-TTTTAAAA
1 TTATAATATATTTTTAAAA
*
6626487 TTATAATATGTTTTT-AAA
1 TTATAATATATTTTTAAAA
*
6626505 TTAATACAATATATTCTTAAAA
1 TT-AT--AATATATTTTTAAAA
6626527 TTATAATA
1 TTATAATA
6626535 ACGAGATTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
17 8 0.21
18 5 0.13
19 10 0.26
21 11 0.28
22 5 0.13
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.48
Consensus pattern (19 bp):
TTATAATATATTTTTAAAA
Found at i:6626505 original size:18 final size:17
Alignment explanation
Indices: 6626470--6626535 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 17
6626460 TCTCTTTGTT
6626470 TTATAATAATTTTAAAA
1 TTATAATAATTTTAAAA
* *
6626487 TTATAATATGTTTTTAAA
1 TTATAATA-ATTTTAAAA
6626505 TTAATACAATATATTCTTAAAA
1 TT-AT--AATA-ATT-TTAAAA
6626527 TTATAATAA
1 TTATAATAA
6626536 CGAGATTTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
17 8 0.20
18 10 0.25
19 6 0.15
21 9 0.22
22 7 0.17
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (17 bp):
TTATAATAATTTTAAAA
Found at i:6626619 original size:16 final size:16
Alignment explanation
Indices: 6626594--6626627 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
6626584 ATAAATTTAT
*
6626594 ATTATAATTATATTAA
1 ATTATAATTATACTAA
*
6626610 ATTATTATTATACTAA
1 ATTATAATTATACTAA
6626626 AT
1 AT
6626628 GCAAATAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (16 bp):
ATTATAATTATACTAA
Found at i:6631375 original size:15 final size:15
Alignment explanation
Indices: 6631355--6631383 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
6631345 TATGCATGCA
6631355 AAACATAAAAGATAG
1 AAACATAAAAGATAG
6631370 AAACATAAAAGATA
1 AAACATAAAAGATA
6631384 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.69, C:0.07, G:0.10, T:0.14
Consensus pattern (15 bp):
AAACATAAAAGATAG
Found at i:6632060 original size:22 final size:22
Alignment explanation
Indices: 6632016--6632057 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
6632006 CCTTTCATTT
*
6632016 TTCTATTATTCTCTCTTGTTTA
1 TTCTATAATTCTCTCTTGTTTA
6632038 TTCTATAATTCTCT-TTGTTT
1 TTCTATAATTCTCTCTTGTTT
6632058 TATAATAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.14, C:0.17, G:0.05, T:0.64
Consensus pattern (22 bp):
TTCTATAATTCTCTCTTGTTTA
Found at i:6632280 original size:15 final size:17
Alignment explanation
Indices: 6632248--6632280 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
6632238 ATATATTCAA
6632248 ATGAAATACAATAAACT
1 ATGAAATACAATAAACT
6632265 ATGAAAT-CAA-AAACT
1 ATGAAATACAATAAACT
6632280 A
1 A
6632281 AAATAATAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 3 0.19
17 7 0.44
ACGTcount: A:0.61, C:0.12, G:0.06, T:0.21
Consensus pattern (17 bp):
ATGAAATACAATAAACT
Found at i:6632348 original size:2 final size:2
Alignment explanation
Indices: 6632341--6632365 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
6632331 TAATACAAAT
6632341 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
6632366 ATCTTCAGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:6634411 original size:23 final size:23
Alignment explanation
Indices: 6634385--6634432 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
6634375 TCAGAACTAA
6634385 AAATTCTCGCTGAAAAAGAATGG
1 AAATTCTCGCTGAAAAAGAATGG
6634408 AAATTCTCGCTGAAAAAGAATGG
1 AAATTCTCGCTGAAAAAGAATGG
6634431 AA
1 AA
6634433 GGCTAGAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.46, C:0.12, G:0.21, T:0.21
Consensus pattern (23 bp):
AAATTCTCGCTGAAAAAGAATGG
Found at i:6636737 original size:23 final size:23
Alignment explanation
Indices: 6636711--6636758 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
6636701 TCAGAACTAA
6636711 AAATTCTCGCTGAAAAAGAATGG
1 AAATTCTCGCTGAAAAAGAATGG
6636734 AAATTCTCGCTGAAAAAGAATGG
1 AAATTCTCGCTGAAAAAGAATGG
6636757 AA
1 AA
6636759 GGCTAGAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.46, C:0.12, G:0.21, T:0.21
Consensus pattern (23 bp):
AAATTCTCGCTGAAAAAGAATGG
Found at i:6643136 original size:11 final size:12
Alignment explanation
Indices: 6643111--6643139 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
6643101 CTTTGCTCAT
6643111 ATAATAAATATA
1 ATAATAAATATA
6643123 ATAATAAA-ATA
1 ATAATAAATATA
6643134 ATAATA
1 ATAATA
6643140 TCTCATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 9 0.53
12 8 0.47
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
ATAATAAATATA
Found at i:6643159 original size:30 final size:31
Alignment explanation
Indices: 6643115--6643193 Score: 99
Period size: 30 Copynumber: 2.6 Consensus size: 31
6643105 GCTCATATAA
*
6643115 TAAATATAATAATAAAATAATA-ATATCTCAT
1 TAAA-ATAATAATAAAATAATATATATCTAAT
* *
6643146 TAAAATATTAATAAAATAATATTTATCTAAT
1 TAAAATAATAATAAAATAATATATATCTAAT
*
6643177 T-AAATAATCATAAAATA
1 TAAAATAATAATAAAATA
6643194 TTAAAATATC
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
30 30 0.71
31 12 0.29
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (31 bp):
TAAAATAATAATAAAATAATATATATCTAAT
Found at i:6650850 original size:23 final size:22
Alignment explanation
Indices: 6650807--6650850 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
6650797 TTCTAAGTCG
6650807 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
6650830 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
6650851 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:6650961 original size:45 final size:45
Alignment explanation
Indices: 6650896--6650988 Score: 150
Period size: 45 Copynumber: 2.1 Consensus size: 45
6650886 ATAGATACTC
* *
6650896 GGTGGATTCAGCACAAAGCAACCACCTTATTAATCAATGATGTCT
1 GGTGGAATCAGCACAAAGCAACCACCTTACTAATCAATGATGTCT
* *
6650941 GGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTTT
1 GGTGGAATCAGCACAAAGCAACCACCTTACTAATCAATGATGTCT
6650986 GGT
1 GGT
6650989 TCACATAGTA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (45 bp):
GGTGGAATCAGCACAAAGCAACCACCTTACTAATCAATGATGTCT
Found at i:6657374 original size:20 final size:21
Alignment explanation
Indices: 6657333--6657390 Score: 66
Period size: 20 Copynumber: 2.8 Consensus size: 21
6657323 GGCCCGGCCT
6657333 ATTT-TTTTAATAAATACCAAAA
1 ATTTATTTTAA-AAATA-CAAAA
6657355 ATTTATTTTAAAAATA-AAAA
1 ATTTATTTTAAAAATACAAAA
**
6657375 AAGTATTTTAAAAATA
1 ATTTATTTTAAAAATA
6657391 TTTTAAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 18 0.55
22 9 0.27
23 6 0.18
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.40
Consensus pattern (21 bp):
ATTTATTTTAAAAATACAAAA
Found at i:6660620 original size:17 final size:17
Alignment explanation
Indices: 6660598--6660632 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
6660588 ATCCTTAATT
6660598 CGGAGGTCAATCAAACA
1 CGGAGGTCAATCAAACA
6660615 CGGAGGTCAATCAAACA
1 CGGAGGTCAATCAAACA
6660632 C
1 C
6660633 TCTCTATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.26, G:0.23, T:0.11
Consensus pattern (17 bp):
CGGAGGTCAATCAAACA
Found at i:6670261 original size:19 final size:19
Alignment explanation
Indices: 6670226--6670284 Score: 68
Period size: 18 Copynumber: 3.1 Consensus size: 19
6670216 TTTTAGATAA
*
6670226 TATAAAT-TTTGGAATTTT
1 TATAAATATTTTGAATTTT
6670244 TATAAATATTTTGAA-TTT
1 TATAAATATTTTGAATTTT
*
6670262 TAAAAATTATTTTGAATTATT
1 TATAAA-TATTTTGAATT-TT
6670283 TA
1 TA
6670285 GTAATTTTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
18 15 0.43
19 15 0.43
20 1 0.03
21 4 0.11
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:6670441 original size:23 final size:23
Alignment explanation
Indices: 6670411--6670464 Score: 108
Period size: 23 Copynumber: 2.3 Consensus size: 23
6670401 TGAACTCAAA
6670411 ACTCGAATTACTTATTCGAGTTG
1 ACTCGAATTACTTATTCGAGTTG
6670434 ACTCGAATTACTTATTCGAGTTG
1 ACTCGAATTACTTATTCGAGTTG
6670457 ACTCGAAT
1 ACTCGAAT
6670465 AATTTGAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.37
Consensus pattern (23 bp):
ACTCGAATTACTTATTCGAGTTG
Found at i:6671387 original size:103 final size:104
Alignment explanation
Indices: 6671256--6671469 Score: 421
Period size: 103 Copynumber: 2.1 Consensus size: 104
6671246 ATAGATATAT
6671256 AATTATATTTTAATATAAAATATATGTTCTAAAATTAAAATACATTATTATTGTATAAAATGTCT
1 AATTATATTTTAATATAAAATATATGTTCTAAAATTAAAATACATTATTATTGTATAAAATGTCT
6671321 TTTTTTACAAAAATTTAAATTATGCATGCGTATTTGAAA
66 TTTTTTACAAAAATTTAAATTATGCATGCGTATTTGAAA
6671360 AATTATATTTT-ATATAAAATATATGTTCTAAAATTAAAATACATTATTATTGTATAAAATGTCT
1 AATTATATTTTAATATAAAATATATGTTCTAAAATTAAAATACATTATTATTGTATAAAATGTCT
6671424 TTTTTTACAAAAATTTAAATTATGCATGCGTATTTGAAA
66 TTTTTTACAAAAATTTAAATTATGCATGCGTATTTGAAA
6671463 AATTATA
1 AATTATA
6671470 AAGTAACTGG
Statistics
Matches: 110, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
103 99 0.90
104 11 0.10
ACGTcount: A:0.43, C:0.06, G:0.07, T:0.44
Consensus pattern (104 bp):
AATTATATTTTAATATAAAATATATGTTCTAAAATTAAAATACATTATTATTGTATAAAATGTCT
TTTTTTACAAAAATTTAAATTATGCATGCGTATTTGAAA
Found at i:6688184 original size:28 final size:28
Alignment explanation
Indices: 6688153--6688209 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
6688143 TTAAATTTTC
*
6688153 AAAAAAAAAAGACTTATAAGCCTAATTT
1 AAAAAAAAAAGACATATAAGCCTAATTT
* * * *
6688181 AAAAAATAAAGGCATATATGGCTAATTT
1 AAAAAAAAAAGACATATAAGCCTAATTT
6688209 A
1 A
6688210 GCCCAAAAAG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.54, C:0.09, G:0.11, T:0.26
Consensus pattern (28 bp):
AAAAAAAAAAGACATATAAGCCTAATTT
Found at i:6688274 original size:12 final size:12
Alignment explanation
Indices: 6688257--6688301 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
6688247 TCCACTATTG
6688257 TTTAGAATTTTT
1 TTTAGAATTTTT
6688269 TTTAGAATTTTT
1 TTTAGAATTTTT
*
6688281 TTT-GAATATTT
1 TTTAGAATTTTT
*
6688292 TATAG-ATTTT
1 TTTAGAATTTT
6688302 AAATCATTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
11 13 0.45
12 16 0.55
ACGTcount: A:0.27, C:0.00, G:0.09, T:0.64
Consensus pattern (12 bp):
TTTAGAATTTTT
Found at i:6688674 original size:19 final size:17
Alignment explanation
Indices: 6688631--6688680 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 17
6688621 ACTTTCAAAA
*
6688631 AATAATTTTTAAAAATT
1 AATATTTTTTAAAAATT
6688648 AGATTATTTTTTAAAAATGCT
1 A-A-TATTTTTTAAAAAT--T
6688669 AATATTTTTTAA
1 AATATTTTTTAA
6688681 TATTTGGATG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
17 1 0.04
18 1 0.04
19 23 0.82
20 1 0.04
21 2 0.07
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (17 bp):
AATATTTTTTAAAAATT
Found at i:6692693 original size:66 final size:66
Alignment explanation
Indices: 6692613--6692746 Score: 268
Period size: 66 Copynumber: 2.0 Consensus size: 66
6692603 AAAATAAAAA
6692613 AAAATCTCTTCTAAACCTAATTTAAAAAAGAAAAGAAAAGAAAAGAAAACCTAACTTAAAAACTA
1 AAAATCTCTTCTAAACCTAATTTAAAAAAGAAAAGAAAAGAAAAGAAAACCTAACTTAAAAACTA
6692678 T
66 T
6692679 AAAATCTCTTCTAAACCTAATTTAAAAAAGAAAAGAAAAGAAAAGAAAACCTAACTTAAAAACTA
1 AAAATCTCTTCTAAACCTAATTTAAAAAAGAAAAGAAAAGAAAAGAAAACCTAACTTAAAAACTA
6692744 T
66 T
6692745 AA
1 AA
6692747 TGAATAACTA
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 68 1.00
ACGTcount: A:0.60, C:0.13, G:0.06, T:0.21
Consensus pattern (66 bp):
AAAATCTCTTCTAAACCTAATTTAAAAAAGAAAAGAAAAGAAAAGAAAACCTAACTTAAAAACTA
T
Found at i:6702472 original size:18 final size:18
Alignment explanation
Indices: 6702438--6702514 Score: 66
Period size: 18 Copynumber: 4.1 Consensus size: 18
6702428 TTAGTCTCAT
*
6702438 TTAACAAAAA-TTAAAAAA
1 TTAA-AAAAATTTTAAAAA
6702456 TTAAAAAAATTTTAAAAA
1 TTAAAAAAATTTTAAAAA
* * *
6702474 GTTCAAAATATTTTTTAAAA
1 -TT-AAAAAAATTTTAAAAA
*
6702494 TTAAAAATATTTATAAAAA
1 TTAAAAAAATTT-TAAAAA
6702513 TT
1 TT
6702515 CTAAAATTTA
Statistics
Matches: 47, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
17 5 0.11
18 18 0.38
19 11 0.23
20 13 0.28
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.36
Consensus pattern (18 bp):
TTAAAAAAATTTTAAAAA
Found at i:6702472 original size:19 final size:19
Alignment explanation
Indices: 6702448--6702512 Score: 76
Period size: 19 Copynumber: 3.4 Consensus size: 19
6702438 TTAACAAAAA
*
6702448 TTAAAAAATTAAAAAAATT
1 TTAAAAAATTAAAAATATT
* *
6702467 TTAAAAAGTTCAAAATATT
1 TTAAAAAATTAAAAATATT
**
6702486 TTTTAAAATTAAAAATATT
1 TTAAAAAATTAAAAATATT
6702505 TATAAAAA
1 T-TAAAAA
6702513 TTCTAAAATT
Statistics
Matches: 36, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
19 32 0.89
20 4 0.11
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (19 bp):
TTAAAAAATTAAAAATATT
Found at i:6702523 original size:18 final size:19
Alignment explanation
Indices: 6702451--6702525 Score: 73
Period size: 19 Copynumber: 4.0 Consensus size: 19
6702441 ACAAAAATTA
* *
6702451 AAAAATTAAAAAAATTT-T
1 AAAAATTCAAAATATTTAT
*
6702469 AAAAAGTTCAAAATATTTTT
1 AAAAA-TTCAAAATATTTAT
* *
6702489 TAAAATTAAAAATATTTAT
1 AAAAATTCAAAATATTTAT
*
6702508 AAAAATTCTAAA-ATTTAT
1 AAAAATTCAAAATATTTAT
6702526 TTTTTAGAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
18 11 0.23
19 31 0.66
20 5 0.11
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (19 bp):
AAAAATTCAAAATATTTAT
Found at i:6704978 original size:17 final size:17
Alignment explanation
Indices: 6704958--6704997 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
6704948 AGAAAAGAAA
*
6704958 GAAAAGAGAGAGGGAAG
1 GAAAAGAGAAAGGGAAG
6704975 GAAAAGAGAAAGGGAAG
1 GAAAAGAGAAAGGGAAG
*
6704992 AAAAAG
1 GAAAAG
6704998 GGATTTAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (17 bp):
GAAAAGAGAAAGGGAAG
Found at i:6705215 original size:8 final size:8
Alignment explanation
Indices: 6705167--6705218 Score: 50
Period size: 8 Copynumber: 6.1 Consensus size: 8
6705157 GTTATAAATG
6705167 TTATTTTT
1 TTATTTTT
6705175 TTATGTTATT
1 TTAT-TT-TT
6705185 TTATTTGTT
1 TTATTT-TT
**
6705194 TTAGATTT
1 TTATTTTT
*
6705202 TAATTTTT
1 TTATTTTT
6705210 TTATTTTT
1 TTATTTTT
6705218 T
1 T
6705219 AAGGTATTAT
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
8 19 0.54
9 10 0.29
10 6 0.17
ACGTcount: A:0.17, C:0.00, G:0.06, T:0.77
Consensus pattern (8 bp):
TTATTTTT
Found at i:6707727 original size:38 final size:38
Alignment explanation
Indices: 6707676--6707756 Score: 108
Period size: 38 Copynumber: 2.1 Consensus size: 38
6707666 ACCATCGTAT
*
6707676 TACTCCACTCCTCCCAACCCAGCCTGTATCCACCACAG
1 TACTCCACTCCTCCCAACCCAGCCTATATCCACCACAG
*** * *
6707714 TACTCCACTCCTCCTGGCCCGGCCTATATCCACCGCAG
1 TACTCCACTCCTCCCAACCCAGCCTATATCCACCACAG
6707752 TACTC
1 TACTC
6707757 TTTTCCTCCC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.20, C:0.48, G:0.11, T:0.21
Consensus pattern (38 bp):
TACTCCACTCCTCCCAACCCAGCCTATATCCACCACAG
Found at i:6708135 original size:48 final size:47
Alignment explanation
Indices: 6708003--6708168 Score: 171
Period size: 48 Copynumber: 3.5 Consensus size: 47
6707993 GCAAAAATAC
* *
6708003 AAACTTTGTAATTTAAATTAGATTAATTGCAAC----AAACTCTAGAC
1 AAACTTTGTAATTTAAATTAGATTAATTGCAACATTAAAACT-TGGAA
* *
6708047 AAACTTTGT-ATTTAATTAATTGAGATTCATCGCAACATTAAAACTTGGAA
1 AAACTTTGTAATTT-A--AATT-AGATTAATTGCAACATTAAAACTTGGAA
**
6708097 TAAACTTTGTAATTTAAATTAGATTAATTGCAACATTAAAACGAGGAA
1 -AAACTTTGTAATTTAAATTAGATTAATTGCAACATTAAAACTTGGAA
*
6708145 AAACCTTTGTAATATAAATTAGAT
1 AAA-CTTTGTAATTTAAATTAGAT
6708169 ACATTGGAGT
Statistics
Matches: 102, Mismatches: 9, Indels: 18
0.79 0.07 0.14
Matches are distributed among these distances:
43 4 0.04
44 10 0.10
46 4 0.04
47 15 0.15
48 43 0.42
49 4 0.04
50 3 0.03
51 15 0.15
52 4 0.04
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.35
Consensus pattern (47 bp):
AAACTTTGTAATTTAAATTAGATTAATTGCAACATTAAAACTTGGAA
Found at i:6711997 original size:102 final size:108
Alignment explanation
Indices: 6711794--6712023 Score: 337
Period size: 109 Copynumber: 2.1 Consensus size: 108
6711784 AGTTACTAAC
*
6711794 AAAATAAATTTAAAAAATAATAAAAGATTACATTCATAACCTAACAAATCACAATGAACATTAAA
1 AAAAT-AATTT-AAAAATAATAAAAGATTACATTCATAACCTAACAAATCACAATAAACATTAAA
6711859 CTAAACAAACAATTAACCTAATCACAAAATTACTAACAAAATAACTTT
64 CTAAACAAACAATT-A--TAATCACAAAATTACTAACAAAATAACTTT
6711907 AAAATAATTTAAAAATAA-AAAA-ATTACATTCATAACCTAACAAATCACAATAAACATTAAACT
1 AAAATAATTTAAAAATAATAAAAGATTACATTCATAACCTAACAAATCACAATAAACATTAAACT
* *
6711970 AAACAAACAATT-T-AT-A-ATAGTTACTAACAAAATAACTTT
66 AAACAAACAATTATAATCACAAAATTACTAACAAAATAACTTT
*
6712009 AAAATAAATTAAAAA
1 AAAATAATTTAAAAA
6712024 CAACATAAAA
Statistics
Matches: 113, Mismatches: 4, Indels: 11
0.88 0.03 0.09
Matches are distributed among these distances:
102 35 0.31
103 1 0.01
104 2 0.02
105 1 0.01
109 52 0.46
110 4 0.04
111 8 0.07
112 5 0.04
113 5 0.04
ACGTcount: A:0.59, C:0.14, G:0.01, T:0.26
Consensus pattern (108 bp):
AAAATAATTTAAAAATAATAAAAGATTACATTCATAACCTAACAAATCACAATAAACATTAAACT
AAACAAACAATTATAATCACAAAATTACTAACAAAATAACTTT
Found at i:6712151 original size:18 final size:17
Alignment explanation
Indices: 6712119--6712152 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
6712109 TACCTTATCC
*
6712119 TTCTTTTTTCTTCTCAT
1 TTCTTTTTCCTTCTCAT
6712136 TTCTTTCTTCCTTCTCA
1 TTCTTT-TTCCTTCTCA
6712153 CTCTCTTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.06, C:0.29, G:0.00, T:0.65
Consensus pattern (17 bp):
TTCTTTTTCCTTCTCAT
Found at i:6713302 original size:31 final size:31
Alignment explanation
Indices: 6713252--6713317 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
6713242 TTTGATCCTC
* * *
6713252 TGCTGGTGCTGGTTCTTTGTTCTTCTACTGG
1 TGCTAGTGCTAGTTCTTTGTTCCTCTACTGG
* *
6713283 TGCTAGTGCTAGTTTTTTGTTCCTCTGCTGG
1 TGCTAGTGCTAGTTCTTTGTTCCTCTACTGG
6713314 TGCT
1 TGCT
6713318 TTGTTCCTCT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.05, C:0.20, G:0.27, T:0.48
Consensus pattern (31 bp):
TGCTAGTGCTAGTTCTTTGTTCCTCTACTGG
Found at i:6713317 original size:25 final size:25
Alignment explanation
Indices: 6713241--6713317 Score: 64
Period size: 31 Copynumber: 2.8 Consensus size: 25
6713231 TCTGCTGCTC
* *
6713241 CTTTGATCCTCTGCTGGTGCTGGTT
1 CTTTGTTCCTCTGCTGGTGCTAGTT
*
6713266 CTTTGTTCTTCTACTGGTGCTAGTGCTAGTT
1 CTTTGTTC--CT-C---TGCTGGTGCTAGTT
*
6713297 TTTTGTTCCTCTGCTGGTGCT
1 CTTTGTTCCTCTGCTGGTGCT
6713318 TTGTTCCTCT
Statistics
Matches: 41, Mismatches: 5, Indels: 12
0.71 0.09 0.21
Matches are distributed among these distances:
25 16 0.39
27 2 0.05
28 2 0.05
29 2 0.05
31 19 0.46
ACGTcount: A:0.05, C:0.22, G:0.25, T:0.48
Consensus pattern (25 bp):
CTTTGTTCCTCTGCTGGTGCTAGTT
Found at i:6716349 original size:15 final size:15
Alignment explanation
Indices: 6716329--6716381 Score: 74
Period size: 15 Copynumber: 3.6 Consensus size: 15
6716319 CAAACTATTT
6716329 TTAATTACATAAATA
1 TTAATTACATAAATA
*
6716344 TTAATTACA-AACT-
1 TTAATTACATAAATA
6716357 TATAATTACATAAATA
1 T-TAATTACATAAATA
6716373 TTAATTACA
1 TTAATTACA
6716382 AACTTGTGCC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
13 1 0.03
14 11 0.33
15 20 0.61
16 1 0.03
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (15 bp):
TTAATTACATAAATA
Found at i:6716364 original size:14 final size:15
Alignment explanation
Indices: 6716312--6716386 Score: 66
Period size: 15 Copynumber: 4.9 Consensus size: 15
6716302 AATAATCATC
*
6716312 TTAATTACAAACTATTT
1 TTAATTACAAAC--TTA
*
6716329 TTAATTACATAA-ATA
1 TTAATTACA-AACTTA
6716344 TTAATTACAAACTTA
1 TTAATTACAAACTTA
*
6716359 -TAATTACATAA-ATA
1 TTAATTACA-AACTTA
6716373 TTAATTACAAACTT
1 TTAATTACAAACTT
6716387 GTGCCTATAA
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
14 14 0.29
15 23 0.48
17 9 0.19
18 2 0.04
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (15 bp):
TTAATTACAAACTTA
Found at i:6716371 original size:29 final size:29
Alignment explanation
Indices: 6716312--6716386 Score: 114
Period size: 29 Copynumber: 2.5 Consensus size: 29
6716302 AATAATCATC
*
6716312 TTAATTACAAACTATTTTTAATTACATAAATA
1 TTAATTACAAAC---TTATAATTACATAAATA
6716344 TTAATTACAAACTTATAATTACATAAATA
1 TTAATTACAAACTTATAATTACATAAATA
6716373 TTAATTACAAACTT
1 TTAATTACAAACTT
6716387 GTGCCTATAA
Statistics
Matches: 42, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
29 30 0.71
32 12 0.29
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (29 bp):
TTAATTACAAACTTATAATTACATAAATA
Found at i:6721215 original size:13 final size:13
Alignment explanation
Indices: 6721197--6721270 Score: 69
Period size: 13 Copynumber: 5.7 Consensus size: 13
6721187 CTCAAAATTT
*
6721197 TCAAAAGTACTTC
1 TCAAAAGCACTTC
6721210 TCAAAAGCACTTC
1 TCAAAAGCACTTC
* *
6721223 TGAAAAGCACTTT
1 TCAAAAGCACTTC
* *
6721236 TCCACAA-CACTTT
1 T-CAAAAGCACTTC
* *
6721249 TGAAAAGCACTTT
1 TCAAAAGCACTTC
6721262 TCAAAAGCA
1 TCAAAAGCA
6721271 ATGAAGAACT
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
12 3 0.06
13 45 0.88
14 3 0.06
ACGTcount: A:0.39, C:0.24, G:0.09, T:0.27
Consensus pattern (13 bp):
TCAAAAGCACTTC
Found at i:6730072 original size:107 final size:107
Alignment explanation
Indices: 6729886--6730105 Score: 377
Period size: 107 Copynumber: 2.1 Consensus size: 107
6729876 TCGATTTATA
* *
6729886 TGAATTAATCATGGAAAAGGAACTCAACTATATTGAGGACCTATTGGAACAAATTTTAACATCAG
1 TGAATCAATCATGGAAAAGGAACTCAACTATATTGAGAACCTATTGGAACAAATTTTAACATCAG
**
6729951 ACCCTCCAAGTGATGAAAAGGATTTAATTTGCAATCCTACTT
66 ACCCTCCAAGTGATGAAAAGGATTTAATCCGCAATCCTACTT
* *
6729993 TGAATCAATCATGGAAAAGGAACTCAACTATGTTGAGAACCTATTGGAACAAATTTTGACATCAG
1 TGAATCAATCATGGAAAAGGAACTCAACTATATTGAGAACCTATTGGAACAAATTTTAACATCAG
*
6730058 ACCCTCCAAGTGATGAAAAGGATTTAATCCGCAATCCTGCTT
66 ACCCTCCAAGTGATGAAAAGGATTTAATCCGCAATCCTACTT
6730100 TGAATC
1 TGAATC
6730106 TTTGGAGTTA
Statistics
Matches: 106, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
107 106 1.00
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (107 bp):
TGAATCAATCATGGAAAAGGAACTCAACTATATTGAGAACCTATTGGAACAAATTTTAACATCAG
ACCCTCCAAGTGATGAAAAGGATTTAATCCGCAATCCTACTT
Found at i:6732271 original size:415 final size:415
Alignment explanation
Indices: 6731501--6732330 Score: 1660
Period size: 415 Copynumber: 2.0 Consensus size: 415
6731491 TTGCTTTTGA
6731501 TAAGTTTTGATCCTATCTTGTAGGTACCAAAGTGACAGACTATATGGACCATTCGACAATTAAGT
1 TAAGTTTTGATCCTATCTTGTAGGTACCAAAGTGACAGACTATATGGACCATTCGACAATTAAGT
6731566 ATTTACTTGCCAAGAAAGACACTAAGGCGAGACTGATCTGATGGGTACTTCTACTTCAAGAGTTC
66 ATTTACTTGCCAAGAAAGACACTAAGGCGAGACTGATCTGATGGGTACTTCTACTTCAAGAGTTC
6731631 GATCTAGAAATTCAAGATCGAAAGGGAGTAAAAAAACAAATAGCAGATCACTTGTCCAGATTGGA
131 GATCTAGAAATTCAAGATCGAAAGGGAGTAAAAAAACAAATAGCAGATCACTTGTCCAGATTGGA
6731696 GCCGCAAGAAGGGAATTCTCCATTTATACCCATTCAGGAGACATTTCTAGATAAACACATACTGA
196 GCCGCAAGAAGGGAATTCTCCATTTATACCCATTCAGGAGACATTTCTAGATAAACACATACTGA
6731761 AGGTAAATCATGTCCATAATACCCCTTGTTTTGCTGATATTGCCAACTATTTAGCTTGTGGTTTG
261 AGGTAAATCATGTCCATAATACCCCTTGTTTTGCTGATATTGCCAACTATTTAGCTTGTGGTTTG
6731826 ATGCCATTGATAAGATGTATCATCAAAAGAAAAAGTTTCTTCACGATGTGAAGTACTATTTCTGG
326 ATGCCATTGATAAGATGTATCATCAAAAGAAAAAGTTTCTTCACGATGTGAAGTACTATTTCTGG
6731891 AAAGAACCATACTTATTTAAAAAGT
391 AAAGAACCATACTTATTTAAAAAGT
6731916 TAAGTTTTGATCCTATCTTGTAGGTACCAAAGTGACAGACTATATGGACCATTCGACAATTAAGT
1 TAAGTTTTGATCCTATCTTGTAGGTACCAAAGTGACAGACTATATGGACCATTCGACAATTAAGT
6731981 ATTTACTTGCCAAGAAAGACACTAAGGCGAGACTGATCTGATGGGTACTTCTACTTCAAGAGTTC
66 ATTTACTTGCCAAGAAAGACACTAAGGCGAGACTGATCTGATGGGTACTTCTACTTCAAGAGTTC
6732046 GATCTAGAAATTCAAGATCGAAAGGGAGTAAAAAAACAAATAGCAGATCACTTGTCCAGATTGGA
131 GATCTAGAAATTCAAGATCGAAAGGGAGTAAAAAAACAAATAGCAGATCACTTGTCCAGATTGGA
6732111 GCCGCAAGAAGGGAATTCTCCATTTATACCCATTCAGGAGACATTTCTAGATAAACACATACTGA
196 GCCGCAAGAAGGGAATTCTCCATTTATACCCATTCAGGAGACATTTCTAGATAAACACATACTGA
6732176 AGGTAAATCATGTCCATAATACCCCTTGTTTTGCTGATATTGCCAACTATTTAGCTTGTGGTTTG
261 AGGTAAATCATGTCCATAATACCCCTTGTTTTGCTGATATTGCCAACTATTTAGCTTGTGGTTTG
6732241 ATGCCATTGATAAGATGTATCATCAAAAGAAAAAGTTTCTTCACGATGTGAAGTACTATTTCTGG
326 ATGCCATTGATAAGATGTATCATCAAAAGAAAAAGTTTCTTCACGATGTGAAGTACTATTTCTGG
6732306 AAAGAACCATACTTATTTAAAAAGT
391 AAAGAACCATACTTATTTAAAAAGT
6732331 GTACAGATCA
Statistics
Matches: 415, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
415 415 1.00
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (415 bp):
TAAGTTTTGATCCTATCTTGTAGGTACCAAAGTGACAGACTATATGGACCATTCGACAATTAAGT
ATTTACTTGCCAAGAAAGACACTAAGGCGAGACTGATCTGATGGGTACTTCTACTTCAAGAGTTC
GATCTAGAAATTCAAGATCGAAAGGGAGTAAAAAAACAAATAGCAGATCACTTGTCCAGATTGGA
GCCGCAAGAAGGGAATTCTCCATTTATACCCATTCAGGAGACATTTCTAGATAAACACATACTGA
AGGTAAATCATGTCCATAATACCCCTTGTTTTGCTGATATTGCCAACTATTTAGCTTGTGGTTTG
ATGCCATTGATAAGATGTATCATCAAAAGAAAAAGTTTCTTCACGATGTGAAGTACTATTTCTGG
AAAGAACCATACTTATTTAAAAAGT
Found at i:6733911 original size:16 final size:15
Alignment explanation
Indices: 6733884--6733917 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
6733874 ATAACTAGTA
*
6733884 TATAATTATATTTAT
1 TATAATTATATTAAT
6733899 TATAATATATATTAAT
1 TATAAT-TATATTAAT
6733915 TAT
1 TAT
6733918 TATCAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATAATTATATTAAT
Found at i:6734126 original size:64 final size:65
Alignment explanation
Indices: 6734018--6734145 Score: 231
Period size: 64 Copynumber: 2.0 Consensus size: 65
6734008 ATTTAATTTG
*
6734018 CATTATATTAATTATTAATTTATTCTAAGAATTCTAATTAAACTCCTACTCCCTTCACTATAAAA
1 CATTATATTAATTATTAATTTATTCTAAGAATTCTAATTAAACTCCTACTCCATTCACTATAAAA
*
6734083 CATTATATTAATTATTAATTT-TTCTAAGAATTCTAATTGAACTCCTACTCCATTCACTATAAA
1 CATTATATTAATTATTAATTTATTCTAAGAATTCTAATTAAACTCCTACTCCATTCACTATAAA
6734146 TTTCACTCAC
Statistics
Matches: 61, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
64 40 0.66
65 21 0.34
ACGTcount: A:0.38, C:0.18, G:0.02, T:0.42
Consensus pattern (65 bp):
CATTATATTAATTATTAATTTATTCTAAGAATTCTAATTAAACTCCTACTCCATTCACTATAAAA
Found at i:6734493 original size:21 final size:20
Alignment explanation
Indices: 6734442--6734497 Score: 53
Period size: 21 Copynumber: 2.8 Consensus size: 20
6734432 ACCCGCGCAT
* *
6734442 CTACTCCCACCAC-GCCTTG
1 CTACTCGCACCACACCCTTG
*
6734461 CTACTCGTACCAACACCCTTG
1 CTACTCGCACC-ACACCCTTG
6734482 CCTA-TCGCACCACACC
1 -CTACTCGCACCACACC
6734498 ATCAAGACAC
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
19 9 0.30
20 7 0.23
21 11 0.37
22 3 0.10
ACGTcount: A:0.21, C:0.50, G:0.09, T:0.20
Consensus pattern (20 bp):
CTACTCGCACCACACCCTTG
Found at i:6753509 original size:21 final size:22
Alignment explanation
Indices: 6753483--6753524 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
6753473 CTACAACTTA
6753483 AAGTAGAGGCAACAGC-GAGGG
1 AAGTAGAGGCAACAGCAGAGGG
*
6753504 AAGTAGAGGCAGCAGCAGAGG
1 AAGTAGAGGCAACAGCAGAGG
6753525 CAACAAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.38, C:0.14, G:0.43, T:0.05
Consensus pattern (22 bp):
AAGTAGAGGCAACAGCAGAGGG
Found at i:6757942 original size:17 final size:17
Alignment explanation
Indices: 6757915--6757959 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 17
6757905 AAAAGTTACA
6757915 AAAT-AAAAAATATAAT
1 AAATAAAAAAATATAAT
* * *
6757931 AATTATAAAAATATTAT
1 AAATAAAAAAATATAAT
6757948 AAATAAAAAAAT
1 AAATAAAAAAAT
6757960 NNNNNNNNNN
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
16 3 0.13
17 20 0.87
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
AAATAAAAAAATATAAT
Found at i:6758123 original size:28 final size:28
Alignment explanation
Indices: 6758088--6758149 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
6758078 ATTTTTAAAA
6758088 ATAAAATTACAAAAAATTAAATAAA-ACT
1 ATAAAATTACAAAAAATTAAA-AAAGACT
** *
6758116 ATAAAATTATTAAAAATTAAAAAAGAGT
1 ATAAAATTACAAAAAATTAAAAAAGACT
6758144 ATAAAA
1 ATAAAA
6758150 ATGATAAAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
27 3 0.10
28 27 0.90
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (28 bp):
ATAAAATTACAAAAAATTAAAAAAGACT
Found at i:6758547 original size:21 final size:21
Alignment explanation
Indices: 6758523--6758565 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
6758513 TAACTTAATG
6758523 TATTTTTATTATTTTATA-TTT
1 TATTTTTATT-TTTTATAGTTT
6758544 TATTTTTATTTTTTATAGTTT
1 TATTTTTATTTTTTATAGTTT
6758565 T
1 T
6758566 TAATAATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (21 bp):
TATTTTTATTTTTTATAGTTT
Found at i:6760416 original size:3 final size:3
Alignment explanation
Indices: 6760402--6760431 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
6760392 GTTAACAATG
*
6760402 ATA ATG ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
6760432 GATGATGTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:6761567 original size:2 final size:2
Alignment explanation
Indices: 6761560--6761597 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
6761550 TCTTCAGAGT
6761560 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
6761598 ACACACATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:6762859 original size:24 final size:24
Alignment explanation
Indices: 6762831--6762882 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
6762821 TTTCTTGAAG
* **
6762831 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATGAACATAATAT
*
6762855 ATTTAGCATTTATTAACATAATAT
1 ATTTAGCATTTATGAACATAATAT
6762879 ATTT
1 ATTT
6762883 GACTTTGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATGAACATAATAT
Found at i:6767216 original size:24 final size:24
Alignment explanation
Indices: 6767182--6767233 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
6767172 TTTCTAGAAG
* *
6767182 ATTTAGTATTTA-TGAGTATAATAT
1 ATTTAGCATTTAGT-AGCATAATAT
6767206 ATTTAGCATTTAGTAGCATAATAT
1 ATTTAGCATTTAGTAGCATAATAT
6767230 ATTT
1 ATTT
6767234 GACTTTGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 24 0.96
25 1 0.04
ACGTcount: A:0.37, C:0.04, G:0.12, T:0.48
Consensus pattern (24 bp):
ATTTAGCATTTAGTAGCATAATAT
Found at i:6770156 original size:21 final size:20
Alignment explanation
Indices: 6770118--6770156 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
6770108 TTAAAATTTC
*
6770118 AAATATTAAAATATTTTTAT
1 AAATATTAAAATAGTTTTAT
*
6770138 AAATCATTAAATTAGTTTT
1 AAAT-ATTAAAATAGTTTT
6770157 GAGATTATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (20 bp):
AAATATTAAAATAGTTTTAT
Found at i:6777581 original size:399 final size:400
Alignment explanation
Indices: 6776832--6777631 Score: 1593
Period size: 399 Copynumber: 2.0 Consensus size: 400
6776822 AAGTGATTTT
6776832 TGGAAAAATTAATTTTGATCAAGTAAAATTAAATTAATAAAATTAATTAAAATTAATATGATATT
1 TGGAAAAATTAATTTTGATCAAGTAAAATTAAATTAATAAAATTAATTAAAATTAATATGATATT
6776897 TTTAGAAATTAATTTTAAAGTCACAAAATTGACTCAATGGGTAATTGAAATTGAAAATTGGACCT
66 TTTAGAAATTAATTTTAAAGTCACAAAATTGACTCAATGGGTAATTGAAATTGAAAATTGGACCT
6776962 GAAATCATAAGTTGGGCCCGGGAGCCCAAAACTGAGACCAAGACCCAAAATTTGGTCAAACCAAG
131 GAAATCATAAGTTGGGCCCGGGAGCCCAAAACTGAGACCAAGACCCAAAATTTGGTCAAACCAAG
6777027 CTTGGTATGTAAAACCAGACTAACGGTCCAATAGGTGACTAGACCGGATCGGTCGAGTCGTCACT
196 CTTGGTATGTAAAACCAGACTAACGGTCCAATAGGTGACTAGACCGGATCGGTCGAGTCGTCACT
6777092 GACCCGAACCGAACTAACAGCAACTAAACCGAATCGGGATGTCAAAAGGGTGTCACACCTGCGCC
261 GACCCGAACCGAACTAACAGCAACTAAACCGAATCGGGATGTCAAAAGGGTGTCACACCTGCGCC
6777157 ACCGGACACGACAATGCTAGCGGCTGGGACGACGGTGTCCTGGTGGTCGACGATAGTTGGTCTTC
326 ACCGGACACGACAATGCTAGCGGCTGGGACGACGGTGTCCTGGTGGTCGACGATAGTTGGTCTTC
6777222 AGTGGTTGAG
391 AGTGGTTGAG
6777232 TGGAAAAATT-ATTTTGATCAAGTAAAATTAAATTAATAAAATTAATTAAAATTAATATGATATT
1 TGGAAAAATTAATTTTGATCAAGTAAAATTAAATTAATAAAATTAATTAAAATTAATATGATATT
6777296 TTTAGAAATTAATTTTAAAGTCACAAAATTGACTCAATGGGTAATTGAAATTGAAAATTGGACCT
66 TTTAGAAATTAATTTTAAAGTCACAAAATTGACTCAATGGGTAATTGAAATTGAAAATTGGACCT
6777361 GAAATCATAAGTTGGGCCCGGGAGCCCAAAACTGAGACCAAGACCCAAAATTTGGTCAAACCAAG
131 GAAATCATAAGTTGGGCCCGGGAGCCCAAAACTGAGACCAAGACCCAAAATTTGGTCAAACCAAG
6777426 CTTGGTATGTAAAACCAGACTAACGGTCCAATAGGTGACTAGACCGGATCGGTCGAGTCGTCACT
196 CTTGGTATGTAAAACCAGACTAACGGTCCAATAGGTGACTAGACCGGATCGGTCGAGTCGTCACT
6777491 GACCCGAACCGAACTAACAGCAACTAAACCGAATCGGGATGTCAAAAGGGTGTCACACCTGCGCC
261 GACCCGAACCGAACTAACAGCAACTAAACCGAATCGGGATGTCAAAAGGGTGTCACACCTGCGCC
6777556 ACCGGACACGACAATGCTAGCGGCTGGGACGACGGTGTCCTGGTGGTCGACGATAGTTGGTCTTC
326 ACCGGACACGACAATGCTAGCGGCTGGGACGACGGTGTCCTGGTGGTCGACGATAGTTGGTCTTC
6777621 AGTGGTTGAG
391 AGTGGTTGAG
6777631 T
1 T
6777632 AGTAGAAGAG
Statistics
Matches: 400, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
399 390 0.98
400 10 0.03
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.24
Consensus pattern (400 bp):
TGGAAAAATTAATTTTGATCAAGTAAAATTAAATTAATAAAATTAATTAAAATTAATATGATATT
TTTAGAAATTAATTTTAAAGTCACAAAATTGACTCAATGGGTAATTGAAATTGAAAATTGGACCT
GAAATCATAAGTTGGGCCCGGGAGCCCAAAACTGAGACCAAGACCCAAAATTTGGTCAAACCAAG
CTTGGTATGTAAAACCAGACTAACGGTCCAATAGGTGACTAGACCGGATCGGTCGAGTCGTCACT
GACCCGAACCGAACTAACAGCAACTAAACCGAATCGGGATGTCAAAAGGGTGTCACACCTGCGCC
ACCGGACACGACAATGCTAGCGGCTGGGACGACGGTGTCCTGGTGGTCGACGATAGTTGGTCTTC
AGTGGTTGAG
Found at i:6786082 original size:22 final size:24
Alignment explanation
Indices: 6786057--6786101 Score: 76
Period size: 22 Copynumber: 2.0 Consensus size: 24
6786047 ATATGGCAAA
6786057 GAATTAAG-TAGAAAAG-AAGTAT
1 GAATTAAGTTAGAAAAGTAAGTAT
6786079 GAATTAAGTTAGAAAAGTAAGTA
1 GAATTAAGTTAGAAAAGTAAGTA
6786102 AACTTAGGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 8 0.38
23 8 0.38
24 5 0.24
ACGTcount: A:0.53, C:0.00, G:0.22, T:0.24
Consensus pattern (24 bp):
GAATTAAGTTAGAAAAGTAAGTAT
Found at i:6786474 original size:37 final size:35
Alignment explanation
Indices: 6786433--6786526 Score: 100
Period size: 36 Copynumber: 2.5 Consensus size: 35
6786423 TATATGTGTA
*
6786433 GAATTGAATTGAATAT-TGACTTGAAAAATGGAAAAGT
1 GAATTGAATTGAAT-TGTGA-TTG-AAAATGAAAAAGT
*
6786470 GAATTTTGAATTGAATTGTGATTGAAAGTGAAAAAGT
1 GAA--TTGAATTGAATTGTGATTGAAAATGAAAAAGT
*
6786507 GAAATTGAATTGAAATGTGA
1 G-AATTGAATTGAATTGTGA
6786527 ATTTGGAGAA
Statistics
Matches: 50, Mismatches: 3, Indels: 9
0.81 0.05 0.15
Matches are distributed among these distances:
36 15 0.30
37 15 0.30
38 6 0.12
39 14 0.28
ACGTcount: A:0.44, C:0.01, G:0.23, T:0.32
Consensus pattern (35 bp):
GAATTGAATTGAATTGTGATTGAAAATGAAAAAGT
Found at i:6789429 original size:7 final size:7
Alignment explanation
Indices: 6789417--6789453 Score: 74
Period size: 7 Copynumber: 5.3 Consensus size: 7
6789407 AAATAGACTT
6789417 TTAAATA
1 TTAAATA
6789424 TTAAATA
1 TTAAATA
6789431 TTAAATA
1 TTAAATA
6789438 TTAAATA
1 TTAAATA
6789445 TTAAATA
1 TTAAATA
6789452 TT
1 TT
6789454 CATGGTTAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (7 bp):
TTAAATA
Found at i:6795413 original size:128 final size:129
Alignment explanation
Indices: 6795226--6795503 Score: 391
Period size: 130 Copynumber: 2.2 Consensus size: 129
6795216 TTCTTGTTGA
* * *
6795226 TTGATTTAGCTGTTCTTAGTTCTTTAAACTACGGTCTTCGCTTTTGTGTTCTTTCAGTTC-AATT
1 TTGATTTTGCTGTTCTTAGCTCTTTAAACTACAGTCTTCGCTTTTGTGTTCTTTCAGTTCAAATT
* *
6795290 AAAATGGGTTTGTTTGTTTTTAC-TTTTTCTGTACTATTTGATTCTTATTGATTGCCCCTTTTG
66 AAAATGGGTTTGTCTGTTTTTACTTTTTTCTGTACTATTTGATTCTTATTGATTGCCCATTTTG
* * *
6795353 TTGATTTTGTTGTTCTTAGCTCTTTGCAAATTACAGT-TTTGCTTTTGTGTTCTTTCAGTTCAAA
1 TTGATTTTGCTGTTCTTAGCTCTTT--AAACTACAGTCTTCGCTTTTGTGTTCTTTCAGTTCAAA
* * * *
6795417 TTTAAATGGGTTTGTCTGTTTTTACTTTTTTTTGTACTGTTTGATTCTTATTGATTGCTCATTTT
64 TTAAAATGGGTTTGTCTGTTTTTACTTTTTTCTGTACTATTTGATTCTTATTGATTGCCCATTTT
6795482 G
129 G
* *
6795483 TTGATTTTACTGTTTTTAGCT
1 TTGATTTTGCTGTTCTTAGCT
6795504 ATTGGCAAAC
Statistics
Matches: 132, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
127 22 0.17
128 23 0.17
129 33 0.25
130 54 0.41
ACGTcount: A:0.15, C:0.13, G:0.16, T:0.56
Consensus pattern (129 bp):
TTGATTTTGCTGTTCTTAGCTCTTTAAACTACAGTCTTCGCTTTTGTGTTCTTTCAGTTCAAATT
AAAATGGGTTTGTCTGTTTTTACTTTTTTCTGTACTATTTGATTCTTATTGATTGCCCATTTTG
Found at i:6795545 original size:130 final size:127
Alignment explanation
Indices: 6795265--6795545 Score: 334
Period size: 130 Copynumber: 2.2 Consensus size: 127
6795255 TACGGTCTTC
*
6795265 GCTTTTGTGTTCTTTCAGTTC-AATTAAAATGGGTTTGTTTGTTTTTACTTTTTCTGTACTATTT
1 GCTTTTGTGTTCTTT-A-TTCAAATTAAAATGGGTTTGTCTGTTTTTACTTTTTCTGTACTATTT
* ** * * * **
6795329 GATTCTTATTGATTGCCCCTTTTGTTGATTTTGTTGTTCTTAGCTCTTTGCAAATTACAGTTTT
64 GATTCTTATTGATTGCCCATTTTGTTGATTTTACTGTTCTTAGCTATTGGCAAATCACACATTT
* * *
6795393 GCTTTTGTGTTCTTTCAGTTCAAATTTAAATGGGTTTGTCTGTTTTTACTTTTTTTTGTACTGTT
1 GCTTTTGTGTTCTTT-A-TTCAAATTAAAATGGGTTTGTCTGTTTTTAC-TTTTTCTGTACTATT
* *
6795458 TGATTCTTATTGATTGCTCATTTTGTTGATTTTACTGTTTTTAGCTATTGGCAAACTGCACAACA
63 TGATTCTTATTGATTGCCCATTTTGTTGATTTTACTGTTCTTAGCTATTGGCAAA-T-CAC-ACA
6795523 TTT
125 TTT
6795526 GCTTTTTGTGTT-TTT-TTCAA
1 GC-TTTTGTGTTCTTTATTCAA
6795546 CTCAATTAAA
Statistics
Matches: 133, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
128 21 0.16
129 25 0.19
130 66 0.50
131 1 0.01
132 2 0.02
133 9 0.07
134 9 0.07
ACGTcount: A:0.16, C:0.13, G:0.16, T:0.55
Consensus pattern (127 bp):
GCTTTTGTGTTCTTTATTCAAATTAAAATGGGTTTGTCTGTTTTTACTTTTTCTGTACTATTTGA
TTCTTATTGATTGCCCATTTTGTTGATTTTACTGTTCTTAGCTATTGGCAAATCACACATTT
Found at i:6799086 original size:49 final size:49
Alignment explanation
Indices: 6799026--6799204 Score: 200
Period size: 49 Copynumber: 3.6 Consensus size: 49
6799016 GATAATAACA
*
6799026 TGCCAAAGCCATATCCCAAACATGGTCTTACATGGGATGTTTCTTGTAC
1 TGCCAATGCCATATCCCAAACATGGTCTTACATGGGATGTTTCTTGTAC
* *
6799075 TGCCAATGCCATATCCCAAATATGGTTTTACATGGGATGTTTCTTGTAC
1 TGCCAATGCCATATCCCAAACATGGTCTTACATGGGATGTTTCTTGTAC
* * * * * **
6799124 TACCAATGCCATTTCCCATATATGGTCTTATATGGGA-G-TTCTCATATC
1 TGCCAATGCCATATCCCAAACATGGTCTTACATGGGATGTTTCTTGTA-C
* * *
6799172 GGTGCCCATGCCATGTCCCAGACATGGTCTTAC
1 --TGCCAATGCCATATCCCAAACATGGTCTTAC
6799205 GGAAGACCTC
Statistics
Matches: 111, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
47 6 0.05
48 2 0.02
49 78 0.70
50 25 0.23
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (49 bp):
TGCCAATGCCATATCCCAAACATGGTCTTACATGGGATGTTTCTTGTAC
Found at i:6799199 original size:50 final size:50
Alignment explanation
Indices: 6799126--6799371 Score: 226
Period size: 50 Copynumber: 4.8 Consensus size: 50
6799116 TCTTGTACTA
* * * ** *
6799126 CCAATGCCATTTCCCATATATGGTCTTATATGGGAGTTCTCATATCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTATATGGGACCTCTCATCTCGGTG
* *
6799176 CCCATGCCATGTCCCAGACATGGTC-T-TACGGAAGACCTCTCATCTCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTATATGG--GACCTCTCATCTCGGTG
* **
6799226 CCAACGCCATGTCCCAGACATGGTCTTATATGAAACCTCTCATCTCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTATATGGGACCTCTCATCTCGGTG
* ** * * *
6799276 CCAATGCCATGTCCCAGATATGGTCTTGCATTGGACCTCTCATAATCTTAATGATG
1 CCAATGCCATGTCCCAGACATGGTCTTATATGGGACCTCTC---ATC-T--CGGTG
* * *
6799332 CCAATGCCATGTCTCAGACATGGTCTTACATGGGATCTCT
1 CCAATGCCATGTCCCAGACATGGTCTTATATGGGACCTCT
6799372 TTACCCAAAT
Statistics
Matches: 159, Mismatches: 27, Indels: 14
0.80 0.14 0.07
Matches are distributed among these distances:
48 4 0.03
49 1 0.01
50 108 0.68
51 1 0.01
52 3 0.02
53 3 0.02
54 1 0.01
56 38 0.24
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.30
Consensus pattern (50 bp):
CCAATGCCATGTCCCAGACATGGTCTTATATGGGACCTCTCATCTCGGTG
Found at i:6803386 original size:26 final size:26
Alignment explanation
Indices: 6803350--6803400 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
6803340 CTCAAGCATA
6803350 CTTGCAGAGTCTGACAAATTCACGTG
1 CTTGCAGAGTCTGACAAATTCACGTG
6803376 CTTGCAGAGTCTGACAAATTCACGT
1 CTTGCAGAGTCTGACAAATTCACGT
6803401 TCATACTCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTGCAGAGTCTGACAAATTCACGTG
Found at i:6805494 original size:49 final size:49
Alignment explanation
Indices: 6805434--6805725 Score: 225
Period size: 49 Copynumber: 5.8 Consensus size: 49
6805424 GATAATAACA
*
6805434 TGCCAAAGCCATATCCCAGACATGGTCTTACATGGGATGTTTCTTGTAC
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGATGTTTCTTGTAC
* *
6805483 TGCCAATGCCATATCCCAGATATGGTCTTACATGAGATGTTTCTTGTAC
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGATGTTTCTTGTAC
* * ** **
6805532 TGCCAATGCCATATCCCAGATATGGTCTTACCTTAGA-G-TTCTCATATC
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGATGTTTCTTGTA-C
* * * * ** * * *
6805580 GGTGCCCATGCCATGTCCCAAACATGGTCTTACAGGGGACCTCTCATCT-C
1 --TGCCAATGCCATATCCCAGACATGGTCTTACATGGGATGTTTCTTGTAC
* * *
6805630 GGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAGTCTCAATG-A-
1 --TGCCAATGCCATATCCCAGACATGGTCTTACATGGGA--TGT--T--TCT---TGTAC
*
6805688 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGAT
6805726 CTCTTTACCC
Statistics
Matches: 199, Mismatches: 29, Indels: 25
0.79 0.11 0.10
Matches are distributed among these distances:
47 6 0.03
48 2 0.01
49 81 0.41
50 65 0.33
52 5 0.03
54 1 0.01
56 38 0.19
59 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (49 bp):
TGCCAATGCCATATCCCAGACATGGTCTTACATGGGATGTTTCTTGTAC
Found at i:6805612 original size:50 final size:50
Alignment explanation
Indices: 6805483--6805719 Score: 192
Period size: 50 Copynumber: 4.6 Consensus size: 50
6805473 TTTCTTGTAC
* * * ** * * *
6805483 TGCCAATGCCATATCCCAGATATGGTCTTACATGAGATGTTTCTTGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGAGACCTCTCATAT-CGG
* * *** **
6805532 TGCCAATGCCATATCCCAGATATGGTCTTACCTTAGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGAGACCTCTCATATCGG
* * * *
6805582 TGCCCATGCCATGTCCCAAACATGGTCTTACAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGAGACCTCTCATATCGG
* *
6805632 TGCCAACGCCATGTCCCAGACATGGTCTTACATGG-GACCTCTCATAGTCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACA-GGAGACCTCTCATA---TC---GG
6805688 TGCCAATGCCATGTCCCAGACATGGTCTTACA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACA
6805720 TGGGATCTCT
Statistics
Matches: 155, Mismatches: 24, Indels: 11
0.82 0.13 0.06
Matches are distributed among these distances:
48 1 0.01
49 40 0.26
50 78 0.50
51 2 0.01
53 2 0.01
56 32 0.21
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGAGACCTCTCATATCGG
Found at i:6809847 original size:26 final size:28
Alignment explanation
Indices: 6809771--6809845 Score: 91
Period size: 31 Copynumber: 2.6 Consensus size: 28
6809761 ATAATAATAC
6809771 AAAGAACTATGAGTTTTTGAATAACATAAA
1 AAAGAACTATGAGTTTTTGAATAACAT--A
*
6809801 ATCAAGGACTATG-GTTTTTGAATAACAT-
1 A--AAGAACTATGAGTTTTTGAATAACATA
6809829 AAAGAACTATGAGTTTT
1 AAAGAACTATGAGTTTT
6809846 GATTTTTTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
26 9 0.22
27 5 0.12
28 1 0.03
30 1 0.03
31 15 0.38
32 9 0.22
ACGTcount: A:0.43, C:0.08, G:0.16, T:0.33
Consensus pattern (28 bp):
AAAGAACTATGAGTTTTTGAATAACATA
Found at i:6810241 original size:23 final size:22
Alignment explanation
Indices: 6810199--6810243 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
6810189 AATAATATCA
*
6810199 TATTAAAATTATTATTAAATAT
1 TATTAAAATTATTATAAAATAT
6810221 TATTAAAAATTATGT-TAAAATAT
1 TATT-AAAATTAT-TATAAAATAT
6810244 GAATAATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 4 0.20
23 15 0.75
24 1 0.05
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (22 bp):
TATTAAAATTATTATAAAATAT
Found at i:6813865 original size:14 final size:14
Alignment explanation
Indices: 6813846--6813885 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
6813836 TTGATTGACA
6813846 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
6813860 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
6813874 GGAAAATGTTTT
1 GTAAAATGTTTT
6813886 ACTTTTCTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:6820287 original size:26 final size:28
Alignment explanation
Indices: 6820211--6820285 Score: 91
Period size: 31 Copynumber: 2.6 Consensus size: 28
6820201 ATAATAATAC
6820211 AAAGAACTATGAGTTTTTGAATAACATAAA
1 AAAGAACTATGAGTTTTTGAATAACAT--A
*
6820241 ATCAAGGACTATG-GTTTTTGAATAACAT-
1 A--AAGAACTATGAGTTTTTGAATAACATA
6820269 AAAGAACTATGAGTTTT
1 AAAGAACTATGAGTTTT
6820286 GATTTTTTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
26 9 0.22
27 5 0.12
28 1 0.03
30 1 0.03
31 15 0.38
32 9 0.22
ACGTcount: A:0.43, C:0.08, G:0.16, T:0.33
Consensus pattern (28 bp):
AAAGAACTATGAGTTTTTGAATAACATA
Found at i:6820761 original size:44 final size:46
Alignment explanation
Indices: 6820711--6820799 Score: 121
Period size: 46 Copynumber: 2.0 Consensus size: 46
6820701 ACCCATATTA
*
6820711 CATTCAACCAAAC-ACAAGAA-TACT-ATTGCAGTTCTATTCCATTC
1 CATTCAACCAAACAAC-AGAATTACTGATTACAGTTCTATTCCATTC
* *
6820755 CATTCAACCAAACAACTGAATTACTGATTACGGTTCTATTCCATT
1 CATTCAACCAAACAACAGAATTACTGATTACAGTTCTATTCCATT
6820800 ACAGCTCTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
44 16 0.41
45 6 0.15
46 17 0.44
ACGTcount: A:0.35, C:0.26, G:0.08, T:0.31
Consensus pattern (46 bp):
CATTCAACCAAACAACAGAATTACTGATTACAGTTCTATTCCATTC
Found at i:6820808 original size:16 final size:16
Alignment explanation
Indices: 6820789--6820831 Score: 77
Period size: 16 Copynumber: 2.7 Consensus size: 16
6820779 TGATTACGGT
6820789 TCTATTCCATTACAGC
1 TCTATTCCATTACAGC
6820805 TCTATTCCATTACAGC
1 TCTATTCCATTACAGC
*
6820821 TCTATTTCATT
1 TCTATTCCATT
6820832 CCCCCCAACC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.23, C:0.28, G:0.05, T:0.44
Consensus pattern (16 bp):
TCTATTCCATTACAGC
Found at i:6826436 original size:39 final size:39
Alignment explanation
Indices: 6826386--6826481 Score: 174
Period size: 39 Copynumber: 2.5 Consensus size: 39
6826376 GGAGTTGTAA
*
6826386 GTGACTATTCATCTACATCACTTAAGTGCTATAGGAGTT
1 GTGACTATTCATCTACATCACTTAAATGCTATAGGAGTT
*
6826425 GTGACTATTCATCTTCATCACTTAAATGCTATAGGAGTT
1 GTGACTATTCATCTACATCACTTAAATGCTATAGGAGTT
6826464 GTGACTATTCATCTACAT
1 GTGACTATTCATCTACAT
6826482 GCATGTGTGT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 54 1.00
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.38
Consensus pattern (39 bp):
GTGACTATTCATCTACATCACTTAAATGCTATAGGAGTT
Found at i:6826515 original size:16 final size:16
Alignment explanation
Indices: 6826494--6826548 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 16
6826484 ATGTGTGTAA
6826494 CTCTTCATATTCAAGT
1 CTCTTCATATTCAAGT
*
6826510 CTCTTCACATTTCTAA--
1 CTCTTCATA-TTC-AAGT
*
6826526 CTCTTCATCTTCAAGT
1 CTCTTCATATTCAAGT
6826542 CTCTTCA
1 CTCTTCA
6826549 CATACCTAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
14 2 0.06
15 3 0.09
16 22 0.69
17 3 0.09
18 2 0.06
ACGTcount: A:0.22, C:0.31, G:0.04, T:0.44
Consensus pattern (16 bp):
CTCTTCATATTCAAGT
Found at i:6826527 original size:32 final size:32
Alignment explanation
Indices: 6826491--6826551 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
6826481 TGCATGTGTG
6826491 TAACTCTTCATATTCAAGTCTCTTCACATTTC
1 TAACTCTTCATATTCAAGTCTCTTCACATTTC
*
6826523 TAACTCTTCATCTTCAAGTCTCTTCACAT
1 TAACTCTTCATATTCAAGTCTCTTCACAT
6826552 ACCTAGAAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.25, C:0.30, G:0.03, T:0.43
Consensus pattern (32 bp):
TAACTCTTCATATTCAAGTCTCTTCACATTTC
Found at i:6829981 original size:39 final size:39
Alignment explanation
Indices: 6829938--6830017 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
6829928 ACATAATGCC
6829938 TTAGTTCAAATATGTACCAAAACATGTCACAAGTAACCA
1 TTAGTTCAAATATGTACCAAAACATGTCACAAGTAACCA
6829977 TTAGTTCAAATATGTACCAAAACATGTCACAAGTAACCA
1 TTAGTTCAAATATGTACCAAAACATGTCACAAGTAACCA
6830016 TT
1 TT
6830018 TTCAAGCCAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.42, C:0.20, G:0.10, T:0.28
Consensus pattern (39 bp):
TTAGTTCAAATATGTACCAAAACATGTCACAAGTAACCA
Found at i:6835828 original size:62 final size:58
Alignment explanation
Indices: 6835743--6835875 Score: 178
Period size: 62 Copynumber: 2.2 Consensus size: 58
6835733 TCTAAAAATA
* *
6835743 ATATTATTTTAAT-AGTTTAATATTAAATTTAATTTAATGTTCATCTTATAGATAAACATT
1 ATATTATTTTAATAAGTTTAATATTAAATTTAATCTAATATTCATC-T-T-GATAAACATT
* *
6835803 ATATTATTTTAATAAGATTTAATATTAAATTTAATCTAATATTTATCTTGATAAATATT
1 ATATTATTTTAATAAG-TTTAATATTAAATTTAATCTAATATTCATCTTGATAAACATT
*
6835862 ATATTAATTTAATA
1 ATATTATTTTAATA
6835876 TTAAAGTGAT
Statistics
Matches: 66, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
59 22 0.33
60 14 0.21
61 3 0.05
62 27 0.41
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.50
Consensus pattern (58 bp):
ATATTATTTTAATAAGTTTAATATTAAATTTAATCTAATATTCATCTTGATAAACATT
Found at i:6835895 original size:41 final size:41
Alignment explanation
Indices: 6835847--6835929 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
6835837 TCTAATATTT
*
6835847 ATCTTGATAAATATTATATTAATTTAATATTAAAGTGATTA
1 ATCTTGATAAATATTATATTAAATTAATATTAAAGTGATTA
*
6835888 ATCTTGATAGATATTATATTAAATTAATATTAAAGTGATTA
1 ATCTTGATAAATATTATATTAAATTAATATTAAAGTGATTA
6835929 A
1 A
6835930 GTTTAATCAT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.45, C:0.02, G:0.08, T:0.45
Consensus pattern (41 bp):
ATCTTGATAAATATTATATTAAATTAATATTAAAGTGATTA
Found at i:6842382 original size:62 final size:62
Alignment explanation
Indices: 6842307--6842427 Score: 224
Period size: 62 Copynumber: 2.0 Consensus size: 62
6842297 CAAAAATCAT
*
6842307 AGTTACCCATCATTTCCACCAACCAACCACTTAGAATTTAGCTGCTCATGGTTATATTTCAG
1 AGTTACCCATCATTTCCACCAACCAACCACTTAGAATTTAGCTACTCATGGTTATATTTCAG
*
6842369 AGTTACCCATCATTTCCACCAACTAACCACTTAGAATTTAGCTACTCATGGTTATATTT
1 AGTTACCCATCATTTCCACCAACCAACCACTTAGAATTTAGCTACTCATGGTTATATTT
6842428 AAACTCATTG
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.30, C:0.26, G:0.10, T:0.34
Consensus pattern (62 bp):
AGTTACCCATCATTTCCACCAACCAACCACTTAGAATTTAGCTACTCATGGTTATATTTCAG
Found at i:6847896 original size:21 final size:21
Alignment explanation
Indices: 6847870--6847948 Score: 68
Period size: 21 Copynumber: 3.6 Consensus size: 21
6847860 AATGGAGGAA
6847870 GTTGAGCAGTTTATCTACACC
1 GTTGAGCAGTTTATCTACACC
** *
6847891 GTTGAGTTGTTTATCCACACC
1 GTTGAGCAGTTTATCTACACC
* *
6847912 GTTTGAACAGCTTTATCTGCACC
1 G-TTGAGCAG-TTTATCTACACC
* *
6847935 TTTTGAGTAGTTTA
1 -GTTGAGCAGTTTA
6847949 ACCACATCGT
Statistics
Matches: 44, Mismatches: 11, Indels: 5
0.73 0.18 0.08
Matches are distributed among these distances:
21 19 0.43
22 9 0.20
23 16 0.36
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (21 bp):
GTTGAGCAGTTTATCTACACC
Found at i:6847948 original size:45 final size:43
Alignment explanation
Indices: 6847871--6847954 Score: 105
Period size: 45 Copynumber: 1.9 Consensus size: 43
6847861 ATGGAGGAAG
* * *
6847871 TTGAGCAGTTTATCTACACCGTTGAGTTGTTTATCCACACCGT
1 TTGAACAGTTTATCTACACCGTTGAGTAGTTTAACCACACCGT
* *
6847914 TTGAACAGCTTTATCTGCACCTTTTGAGTAGTTTAACCACA
1 TTGAACAG-TTTATCTACACC-GTTGAGTAGTTTAACCACA
6847955 TCGTACTAGC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 7 0.21
44 11 0.32
45 16 0.47
ACGTcount: A:0.24, C:0.23, G:0.17, T:0.37
Consensus pattern (43 bp):
TTGAACAGTTTATCTACACCGTTGAGTAGTTTAACCACACCGT
Found at i:6850994 original size:21 final size:21
Alignment explanation
Indices: 6850955--6850995 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
6850945 ATCGTAAGAG
**
6850955 AAAGATCGAGTGGTAAAAGGC
1 AAAGATCGAGTAATAAAAGGC
*
6850976 AAAGATCGAGTAATTAAAGG
1 AAAGATCGAGTAATAAAAGG
6850996 ATTTGTATGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.46, C:0.07, G:0.29, T:0.17
Consensus pattern (21 bp):
AAAGATCGAGTAATAAAAGGC
Found at i:6852702 original size:22 final size:21
Alignment explanation
Indices: 6852677--6852729 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
6852667 AGTCCCTAAT
6852677 TATGTGTTTTAATTTCTCCTAG
1 TATGTGTTTTAATTTCT-CTAG
*
6852699 TATGT-TATTTAATTTGTCTAG
1 TATGTGT-TTTAATTTCTCTAG
6852720 -ATGATGTTTT
1 TATG-TGTTTT
6852730 GATTATGTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
20 3 0.11
21 9 0.33
22 15 0.56
ACGTcount: A:0.21, C:0.08, G:0.15, T:0.57
Consensus pattern (21 bp):
TATGTGTTTTAATTTCTCTAG
Found at i:6858582 original size:16 final size:16
Alignment explanation
Indices: 6858561--6858591 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6858551 ATCACTATTA
*
6858561 TGTCTTTTGTATTTTC
1 TGTCTTTTATATTTTC
6858577 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
6858592 GCATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.10, G:0.10, T:0.71
Consensus pattern (16 bp):
TGTCTTTTATATTTTC
Found at i:6871642 original size:125 final size:122
Alignment explanation
Indices: 6871420--6871694 Score: 444
Period size: 125 Copynumber: 2.2 Consensus size: 122
6871410 TTATTTCGAG
*
6871420 TTGACGTTTCT-AGTCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTAAGAAGAAATTGT
1 TTGACGTTTCTGAG-CAAATAGTAT-AAATCACTTCTACCAGGATGCTATTTAAGAAGAAATTGT
* * *
6871484 GAAATCGTGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAATTTTTTT
64 GAAATCATGCCCTCGTGGACGCGATTTCACTACAGTTGGTCATGTAAGAAATAA--ATTTT
* *
6871545 TTGACGTTTCTGAGCAAAATAGTATAAATCACTTCTACCAGGATGCTATTTGAGAAGGAATTGTG
1 TTGACGTTTCTGAGC-AAATAGTATAAATCACTTCTACCAGGATGCTATTTAAGAAGAAATTGTG
6871610 AAATCATGCCCTCGTGGACGCGATTTCACTACAGTTGGTCATGTAAGAAATAAATTTT
65 AAATCATGCCCTCGTGGACGCGATTTCACTACAGTTGGTCATGTAAGAAATAAATTTT
6871668 TTGACGTTTCTGAGCAAATAGTATAAA
1 TTGACGTTTCTGAGCAAATAGTATAAA
6871695 ATCGCGCCCT
Statistics
Matches: 142, Mismatches: 6, Indels: 7
0.92 0.04 0.05
Matches are distributed among these distances:
122 12 0.08
123 19 0.13
125 100 0.70
126 11 0.08
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (122 bp):
TTGACGTTTCTGAGCAAATAGTATAAATCACTTCTACCAGGATGCTATTTAAGAAGAAATTGTGA
AATCATGCCCTCGTGGACGCGATTTCACTACAGTTGGTCATGTAAGAAATAAATTTT
Found at i:6874637 original size:30 final size:30
Alignment explanation
Indices: 6874603--6874949 Score: 439
Period size: 29 Copynumber: 11.8 Consensus size: 30
6874593 TTGTTAATGG
*
6874603 TTAGGGTTTTTAATTAAATTAAGTTAGGGT
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGT
6874633 TTAGGGTTTTTAATTAAATTAGGTTAGGG-
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGT
*
6874662 TTAGGGTTTTTAATTAAATTAGGTTAAGGT
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGT
* *
6874692 TTAGGGTTTTAAAATAAATTAGGTTAGGGTT
1 TTAGGGTTTTTAATTAAATTAGGTTAGGG-T
* *
6874723 AGGGTTAGGGTTTTTAATTAAATTAGGATAGAG-
1 ----TTAGGGTTTTTAATTAAATTAGGTTAGGGT
6874756 TTAGGGTTTTTAATTAAATTAGGTTAGGGT
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGT
* * *
6874786 TTAGGGTTTTAAAATAAATAAGGTTAGGGT
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGT
**
6874816 TTAGGG-TTTT-A--AAA-TA-AATAGGG-
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGT
6874839 TTAGGGTTTTTAATTAAATTAGGTTAGGG-
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGT
*
6874868 TTAGGGTTTTTAATTAAATTAAGTTAGGG-
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGT
*
6874897 TTAGGGTTTTTTAATTAAATT-GGTTAGTGT
1 TTAGGG-TTTTTAATTAAATTAGGTTAGGGT
6874927 TTAGGGTTTTTAATTAAATTAGG
1 TTAGGGTTTTTAATTAAATTAGG
6874950 ATTTTTTTAC
Statistics
Matches: 278, Mismatches: 23, Indels: 32
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.02
24 9 0.03
25 2 0.01
26 3 0.01
27 3 0.01
28 3 0.01
29 117 0.42
30 109 0.39
31 1 0.00
35 25 0.09
ACGTcount: A:0.31, C:0.00, G:0.26, T:0.44
Consensus pattern (30 bp):
TTAGGGTTTTTAATTAAATTAGGTTAGGGT
Found at i:6874693 original size:59 final size:58
Alignment explanation
Indices: 6874601--6874949 Score: 426
Period size: 59 Copynumber: 5.9 Consensus size: 58
6874591 TTTTGTTAAT
*
6874601 GGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTA-GGTTTAGGGTTTTTAATTAAATTAGGTTAG
**
6874660 GGTTAGGGTTTTTAATTAAATTAGGTTAAGGTTTAGGGTTTTAAAATAAATTAGGTTAGGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTT-AGGTTTAGGGTTTT----T-AATTAAATTA-GGTTAG
*
6874725 GGTTAGGGTTTTTAATTAAATTAGGATAGAG-TTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG-GTTTAGGGTTTTTAATTAAATTAGGTTAG
* * * **
6874783 GGTTTAGGGTTTTAAAATAAATAAGGTTAGGGTTTAGGG-TTTT-A--AAA-TA-AATAG
1 GG-TTAGGGTTTTTAATTAAATTAGGTTA-GGTTTAGGGTTTTTAATTAAATTAGGTTAG
* *
6874837 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAAGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAGGTTTAGGGTTTTTAATTAAATTAGGTTAG
6874895 GGTTAGGGTTTTTTAATTAAATT-GGTTAGTGTTTAGGGTTTTTAATTAAATTAGG
1 GGTTAGGG-TTTTTAATTAAATTAGGTTAG-GTTTAGGGTTTTTAATTAAATTAGG
6874950 ATTTTTTTAC
Statistics
Matches: 251, Mismatches: 20, Indels: 38
0.81 0.06 0.12
Matches are distributed among these distances:
52 8 0.03
53 27 0.11
54 6 0.02
55 2 0.01
56 6 0.02
57 2 0.01
58 26 0.10
59 111 0.44
60 9 0.04
63 1 0.00
64 20 0.08
65 33 0.13
ACGTcount: A:0.30, C:0.00, G:0.26, T:0.44
Consensus pattern (58 bp):
GGTTAGGGTTTTTAATTAAATTAGGTTAGGTTTAGGGTTTTTAATTAAATTAGGTTAG
Found at i:6874853 original size:112 final size:111
Alignment explanation
Indices: 6874722--6874945 Score: 342
Period size: 112 Copynumber: 2.0 Consensus size: 111
6874712 AGGTTAGGGT
*
6874722 TAGGGTTAGGGTTTTTAATTAAATTAGGATAGAGTTAGGGTTTTTAATTAAATTAGGTTAGGGTT
1 TAGGGTTAGGGTTTTTAATTAAATTAGGATAGAGTTAGGGTTTTTAATTAAATTAAGTTAGGG-T
6874787 TAGGG-TTTTAAAATAAATAAGGTTAGGGTTTAGGGTTTTAAAATAAA
65 TAGGGTTTTTAAAATAAAT-AGGTTAGGGTTTAGGGTTTTAAAATAAA
* *
6874834 TAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAAGTTAGGGTT
1 TAGGGTTAGGGTTTTTAATTAAATTAGGATAGAGTTAGGGTTTTTAATTAAATTAAGTTAGGGTT
* * * * * *
6874899 AGGGTTTTTTAATTAAATTGGTTAGTGTTTAGGGTTTTTAATTAAA
66 AGGGTTTTTAAAATAAATAGGTTAGGGTTTAGGGTTTTAAAATAAA
6874945 T
1 T
6874946 TAGGATTTTT
Statistics
Matches: 102, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
111 31 0.30
112 71 0.70
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (111 bp):
TAGGGTTAGGGTTTTTAATTAAATTAGGATAGAGTTAGGGTTTTTAATTAAATTAAGTTAGGGTT
AGGGTTTTTAAAATAAATAGGTTAGGGTTTAGGGTTTTAAAATAAA
Found at i:6886323 original size:51 final size:51
Alignment explanation
Indices: 6886255--6886354 Score: 130
Period size: 51 Copynumber: 2.0 Consensus size: 51
6886245 AATTATTTAA
**
6886255 AAATAGAGATTTAAGAGAAATTTAAAAGGAAATCGAGAGTTAATTGAGATT
1 AAATAGAGATTTAAGAGAAATTTAAAAGGAAATCGAGAGGAAATTGAGATT
* ** *
6886306 AAATATGA-ATTTGAGAGAAATTTGGAAGGAAATTGAGAGGAAATTGAGA
1 AAATA-GAGATTTAAGAGAAATTTAAAAGGAAATCGAGAGGAAATTGAGA
6886355 GGAAATTTGA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
51 40 0.95
52 2 0.05
ACGTcount: A:0.48, C:0.01, G:0.25, T:0.26
Consensus pattern (51 bp):
AAATAGAGATTTAAGAGAAATTTAAAAGGAAATCGAGAGGAAATTGAGATT
Found at i:6886329 original size:11 final size:12
Alignment explanation
Indices: 6886313--6886367 Score: 73
Period size: 11 Copynumber: 4.8 Consensus size: 12
6886303 ATTAAATATG
6886313 AATTTGAGA-GA
1 AATTTGAGAGGA
6886324 AATTTG-GAAGGA
1 AATTTGAG-AGGA
6886336 AA-TTGAGAGGA
1 AATTTGAGAGGA
6886347 AA-TTGAGAGGA
1 AATTTGAGAGGA
6886358 AATTTGAGAG
1 AATTTGAGAG
6886368 AGGATTTGTT
Statistics
Matches: 40, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
10 1 0.03
11 27 0.68
12 12 0.30
ACGTcount: A:0.44, C:0.00, G:0.33, T:0.24
Consensus pattern (12 bp):
AATTTGAGAGGA
Found at i:6897626 original size:29 final size:30
Alignment explanation
Indices: 6897583--6897639 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
6897573 CCTTTTTAAT
*
6897583 TTCCCCCCAATACTTTTAC-ACCCTCCCAC
1 TTCCCCCCAAGACTTTTACTACCCTCCCAC
* *
6897612 TTCCCCCTAAGACTTTTACTTCCCTCCC
1 TTCCCCCCAAGACTTTTACTACCCTCCC
6897640 GTCGCACCCC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 17 0.71
30 7 0.29
ACGTcount: A:0.18, C:0.49, G:0.02, T:0.32
Consensus pattern (30 bp):
TTCCCCCCAAGACTTTTACTACCCTCCCAC
Found at i:6897904 original size:163 final size:164
Alignment explanation
Indices: 6897687--6898016 Score: 468
Period size: 163 Copynumber: 2.0 Consensus size: 164
6897677 GTTTTTTGAA
* * * *
6897687 TATTTTCCCCTATTTACTTTTCCCCCCAAAATTTTATTCCCCTCACCCTCAAAACTTTTTATTTC
1 TATTTACCCCCATTTACTTTTCCCCCCAAAATTTTATTCCCCTAACCCTCAAAACTTATTATTTC
* *
6897752 CCCCCTAAACTTTTACTTTTCACCCTTTACCATAAATAAAAAATCATAAAAAAAAATCCTTAAAC
66 CCCCCTAAACTTTTACTTTTCACCCTTTACCACAAATAAAAAATCATAAAAAAAAATCCCTAAAC
* *
6897817 ATAAATAGTAATAATTTTATTTATATATACTGTT
131 ATAAATAGTAATAATTTTATTTAGATATACTATT
* *
6897851 TATTTACCCCCATTTAC-TTTCCCTCTC-AAATTTTATTCTCCC-AACCTTCAAAACTTATTATT
1 TATTTACCCCCATTTACTTTTCCC-CCCAAAATTTTATTC-CCCTAACCCTCAAAACTTATTATT
* * * * *
6897913 TTCCCCCTAAATTTTTACTTTTCACCCTTTACCCCAAATAAAAGATCATCAAAAAAAATCCCTAA
64 TCCCCCCTAAACTTTTACTTTTCACCCTTTACCACAAATAAAAAATCATAAAAAAAAATCCCTAA
* *
6897978 ATATAAATAGTAATAATTTTATTTAGATCTACTATT
129 ACATAAATAGTAATAATTTTATTTAGATATACTATT
6898014 TAT
1 TAT
6898017 ATTATTAAAT
Statistics
Matches: 147, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
163 127 0.86
164 20 0.14
ACGTcount: A:0.35, C:0.24, G:0.02, T:0.40
Consensus pattern (164 bp):
TATTTACCCCCATTTACTTTTCCCCCCAAAATTTTATTCCCCTAACCCTCAAAACTTATTATTTC
CCCCCTAAACTTTTACTTTTCACCCTTTACCACAAATAAAAAATCATAAAAAAAAATCCCTAAAC
ATAAATAGTAATAATTTTATTTAGATATACTATT
Done.