Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43060996
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2186021 characters in sequence are not A, C, G, or T
File 38 of 128
Found at i:11803887 original size:40 final size:40
Alignment explanation
Indices: 11803839--11804316 Score: 456
Period size: 40 Copynumber: 12.1 Consensus size: 40
11803829 AATGTTTTTT
* *
11803839 GCGGCGTTTTTGATAAAGCGCCGCTAATGCTCGATCTATA
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATA
* * * *
11803879 GCGTCGTTTTTCTAAAAGCGACGCTAATGCTCCATCTATA
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATA
*
11803919 GCGGCGTTTTTCAAAAAGCGCCGCTAATGGTCGA-CATATA
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATC-TATA
* * * *
11803959 GTGACGTTTTTCAAAAAGCACCACTAATGCTCGATCTATA
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATA
*** * * *
11803999 AAAGCGATTTTCAAAAAGCGCCACTAATGCTCCATCTATA
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATA
*
11804039 GCGGCGTTTTTCAAAAAGCGCCGCTAATGGTCGA-CATATA
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATC-TATA
* *
11804079 GCGACGTTTTTCAAAAAGCGCCGCTAATACTCGATCTATA
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATA
* *
11804119 GAGGCGATTTTCAAAAA-CTGCCGCTAATGCTCGATCTATA
1 GCGGCGTTTTTCAAAAAGC-GCCGCTAATGCTCGATCTATA
* *
11804159 GCAGCGTTTTTCAAAAAGCGCCTCTAATGC-C-A-CTA-A
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATA
* *** * * ** ** * * *
11804195 --AGC--TCAACAAAAAACGACGACGTTGTGCTTAATTTTTT
1 GCGGCGTTTTTCAAAAAGCGCCG-C-TAATGCTCGATCTATA
* * * *
11804233 GCGGTGTTTTTCAAATAGCGCCGCTAATGGTCGACCTATA
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATA
*
11804273 GTGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATA
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATA
11804313 GCGG
1 GCGG
11804317 TGTGTTTTAT
Statistics
Matches: 346, Mismatches: 76, Indels: 32
0.76 0.17 0.07
Matches are distributed among these distances:
32 10 0.03
33 1 0.00
34 7 0.02
36 2 0.01
37 4 0.01
38 1 0.00
39 4 0.01
40 303 0.88
41 4 0.01
42 10 0.03
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (40 bp):
GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATA
Found at i:11804056 original size:120 final size:120
Alignment explanation
Indices: 11803843--11804187 Score: 505
Period size: 120 Copynumber: 2.9 Consensus size: 120
11803833 TTTTTTGCGG
* * ** * * *
11803843 CGTTTTTGATAAAGCGCCGCTAATGCTCGATCTAT-AGCGTCGTTTTTCTAAAAGCGACGCTAAT
1 CGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAAAAG-CGATTTTCAAAAAGCGCCGCTAAT
*
11803907 GCTCCATCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATGGTCGACATATAGTGA
65 GCTCCATCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATGGTCGACATATAGCGA
* * *
11803963 CGTTTTTCAAAAAGCACCACTAATGCTCGATCTATAAAAGCGATTTTCAAAAAGCGCCACTAATG
1 CGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAAAAGCGATTTTCAAAAAGCGCCGCTAATG
11804028 CTCCATCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATGGTCGACATATAGCGA
66 CTCCATCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATGGTCGACATATAGCGA
* * *
11804083 CGTTTTTCAAAAAGCGCCGCTAATACTCGATCTATAGAGGCGATTTTCAAAAA-CTGCCGCTAAT
1 CGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAAAAGCGATTTTCAAAAAGC-GCCGCTAAT
* * *
11804147 GCTCGATCTATAGCAGCGTTTTTCAAAAAGCGCCTCTAATG
65 GCTCCATCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATG
11804188 CCACTAAAGC
Statistics
Matches: 203, Mismatches: 20, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
119 1 0.00
120 200 0.99
121 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.28
Consensus pattern (120 bp):
CGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAAAAGCGATTTTCAAAAAGCGCCGCTAATG
CTCCATCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATGGTCGACATATAGCGA
Found at i:11805574 original size:13 final size:13
Alignment explanation
Indices: 11805556--11805580 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11805546 ATTACGGAGC
11805556 ATTATCGTACAAA
1 ATTATCGTACAAA
11805569 ATTATCGTACAA
1 ATTATCGTACAA
11805581 TTAGAAACAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (13 bp):
ATTATCGTACAAA
Found at i:11809049 original size:22 final size:21
Alignment explanation
Indices: 11809003--11809051 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
11808993 AAAATCACAC
* *
11809003 ATTATATAAAAAATCAGTAAT
1 ATTATATAAAAAAACAATAAT
*
11809024 -TTATACTAAAAAAACAATATT
1 ATTATA-TAAAAAAACAATAAT
11809045 ATTATAT
1 ATTATAT
11809052 CACACATTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
20 5 0.22
21 13 0.57
22 5 0.22
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.37
Consensus pattern (21 bp):
ATTATATAAAAAAACAATAAT
Found at i:11809439 original size:19 final size:19
Alignment explanation
Indices: 11809408--11809475 Score: 79
Period size: 20 Copynumber: 3.5 Consensus size: 19
11809398 AAAAATATAA
11809408 ATTTTGAAATTTATATAAA-T
1 ATTTTG-AATTTATA-AAATT
11809428 ATTTTGAATTTA-AAAATT
1 ATTTTGAATTTATAAAATT
11809446 ATTTTGAAGTTT-TAAAAATT
1 ATTTTGAA-TTTAT-AAAATT
11809466 ATTTTGAATT
1 ATTTTGAATT
11809476 ATTTTGTAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
17 3 0.07
18 10 0.23
19 11 0.25
20 20 0.45
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.51
Consensus pattern (19 bp):
ATTTTGAATTTATAAAATT
Found at i:11815275 original size:13 final size:13
Alignment explanation
Indices: 11815257--11815281 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11815247 TCAAGGCAAA
11815257 TAATGCTATCAAC
1 TAATGCTATCAAC
11815270 TAATGCTATCAA
1 TAATGCTATCAA
11815282 TACTTGATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (13 bp):
TAATGCTATCAAC
Found at i:11817597 original size:6 final size:6
Alignment explanation
Indices: 11817583--11817636 Score: 99
Period size: 6 Copynumber: 9.0 Consensus size: 6
11817573 AACGGAAGAG
*
11817583 AGTGGA AGTGAA AGTGAA AGTGAA AGTGAA AGTGAA AGTGAA AGTGAA
1 AGTGAA AGTGAA AGTGAA AGTGAA AGTGAA AGTGAA AGTGAA AGTGAA
11817631 AGTGAA
1 AGTGAA
11817637 GAGGCAGCTG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 47 1.00
ACGTcount: A:0.48, C:0.00, G:0.35, T:0.17
Consensus pattern (6 bp):
AGTGAA
Found at i:11821626 original size:16 final size:16
Alignment explanation
Indices: 11821607--11821638 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
11821597 TAATTATCAC
11821607 ATGAATTAAATTAATT
1 ATGAATTAAATTAATT
*
11821623 ATGAATTAATTTAATT
1 ATGAATTAAATTAATT
11821639 TGATAGTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (16 bp):
ATGAATTAAATTAATT
Found at i:11822195 original size:287 final size:286
Alignment explanation
Indices: 11821591--11822119 Score: 916
Period size: 287 Copynumber: 1.8 Consensus size: 286
11821581 CCGAATCCAT
*
11821591 TTTATTTAATTATCACATGAATTAAATTAATTATGAATTAATTTAATTTGATAGTTAAATATTAA
1 TTTATTTAATTATAACATGAATTAAATTAATTATGAATTAATTTAATTTGATAGTTAAATATTAA
*
11821656 ACACATTTTATGTACAAACTTGTTGTACACAAATAGAAAATATAGATATAGTTAATATATGAACT
66 ACACATTTTATGTACAAACTTGTTGTACACAAATAGAAAATATAGATATAATTAATATATGAACT
11821721 TGATTCATACAAAATATTAATTTTATATATTTTACCGAATTTATTAATATAAACAGTTAATTATA
131 TGATTCATACAAAATATTAATTTTATATATTTTACCGAATTTATTAATATAAACAGTTAATTATA
*
11821786 AAAAACATAAAAATTAATATTATTTTGGAAAAAATATAATTAATATTTAACTCTATAGTTGAAAC
196 AAAAACATAAAAATTAATATTATTTTGGAAAAAATATAATTAATATTTAACTCTATAGTTCAAAC
* * *
11821851 GAATCGAATCCAAATACATTTGGTAT
261 AAATCGAATCCAAATACATTTCGTAA
* * *
11821877 TTTATTTAGTTATCACATGAATTAAATTAATTGTTGAATTAATTTAATTTGATAGTTAAATATTA
1 TTTATTTAATTATAACATGAATTAAATTAATT-ATGAATTAATTTAATTTGATAGTTAAATATTA
*
11821942 AACACATTTTATGTACAAACTTGTTGTACACAAATAGAGAATATAGATATAATTAATATATGAAC
65 AACACATTTTATGTACAAACTTGTTGTACACAAATAGAAAATATAGATATAATTAATATATGAAC
*
11822007 TTGATTCATACAAAATATTAATTTTATATATTTTACTGAATTTATTAATATAAACAGTTAATTAT
130 TTGATTCATACAAAATATTAATTTTATATATTTTACCGAATTTATTAATATAAACAGTTAATTAT
* * *
11822072 AAAAAA-ATGAAAATTAATATTCTTTTGGAAAGAATATAATTAATATTT
195 AAAAAACATAAAAATTAATATTATTTTGGAAAAAATATAATTAATATTT
11822120 GAATTTGATT
Statistics
Matches: 234, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
286 70 0.30
287 164 0.70
ACGTcount: A:0.45, C:0.07, G:0.08, T:0.41
Consensus pattern (286 bp):
TTTATTTAATTATAACATGAATTAAATTAATTATGAATTAATTTAATTTGATAGTTAAATATTAA
ACACATTTTATGTACAAACTTGTTGTACACAAATAGAAAATATAGATATAATTAATATATGAACT
TGATTCATACAAAATATTAATTTTATATATTTTACCGAATTTATTAATATAAACAGTTAATTATA
AAAAACATAAAAATTAATATTATTTTGGAAAAAATATAATTAATATTTAACTCTATAGTTCAAAC
AAATCGAATCCAAATACATTTCGTAA
Found at i:11830553 original size:13 final size:13
Alignment explanation
Indices: 11830538--11830583 Score: 58
Period size: 13 Copynumber: 3.6 Consensus size: 13
11830528 CAACCCAATT
*
11830538 TTTATTTTTTATT
1 TTTATTTTTTATC
*
11830551 TTTATTTTTTAAC
1 TTTATTTTTTATC
*
11830564 TTTATTTATTA-C
1 TTTATTTTTTATC
11830576 TTTATTTT
1 TTTATTTT
11830584 ATTTTGTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
12 8 0.28
13 21 0.72
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTATTTTTTATC
Found at i:11841816 original size:20 final size:20
Alignment explanation
Indices: 11841791--11841830 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
11841781 TCGTTCTTTA
11841791 ATTGATATATAATAAAATAG
1 ATTGATATATAATAAAATAG
*
11841811 ATTGATATATAGTAAAATAG
1 ATTGATATATAATAAAATAG
11841831 CCAAGACTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.12, T:0.35
Consensus pattern (20 bp):
ATTGATATATAATAAAATAG
Found at i:11847561 original size:9 final size:9
Alignment explanation
Indices: 11847547--11847574 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
11847537 AACTAAATAT
11847547 AACAAAATG
1 AACAAAATG
11847556 AACAAAATG
1 AACAAAATG
11847565 AACAAAATG
1 AACAAAATG
11847574 A
1 A
11847575 GCTTGCATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.68, C:0.11, G:0.11, T:0.11
Consensus pattern (9 bp):
AACAAAATG
Found at i:11857095 original size:30 final size:31
Alignment explanation
Indices: 11857051--11857110 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 31
11857041 TTCTTATGCC
11857051 AATATTTCGATACCCATATCTTTGACTTTCT
1 AATATTTCGATACCCATATCTTTGACTTTCT
11857082 AATATTT-GATACCCATATCTTTGACTTTC
1 AATATTTCGATACCCATATCTTTGACTTTC
11857111 CATAATAAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 22 0.76
31 7 0.24
ACGTcount: A:0.27, C:0.22, G:0.07, T:0.45
Consensus pattern (31 bp):
AATATTTCGATACCCATATCTTTGACTTTCT
Found at i:11858463 original size:28 final size:28
Alignment explanation
Indices: 11858431--11858518 Score: 133
Period size: 28 Copynumber: 3.1 Consensus size: 28
11858421 GCTAAAACAA
11858431 GTTAGGAGTATTTGTATGTAGTTTAAAG
1 GTTAGGAGTATTTGTATGTAGTTTAAAG
11858459 GTTAGGAGTATTTGTATGTAGTTTAAAG
1 GTTAGGAGTATTTGTATGTAGTTTAAAG
*
11858487 GTGGAGAAGAG-ATTTGTATGTAGTTTAAAG
1 GT-TAG--GAGTATTTGTATGTAGTTTAAAG
11858517 GT
1 GT
11858519 GGATAAGAGA
Statistics
Matches: 56, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
28 30 0.54
29 2 0.04
30 21 0.38
31 3 0.05
ACGTcount: A:0.30, C:0.00, G:0.31, T:0.40
Consensus pattern (28 bp):
GTTAGGAGTATTTGTATGTAGTTTAAAG
Found at i:11858504 original size:30 final size:30
Alignment explanation
Indices: 11858440--11858532 Score: 138
Period size: 30 Copynumber: 3.2 Consensus size: 30
11858430 AGTTAGGAGT
*
11858440 ATTTGTATGTAGTTTAAAGGT-TAG--GAG
1 ATTTGTATGTAGTTTAAAGGTGGAGAAGAG
11858467 TATTTGTATGTAGTTTAAAGGTGGAGAAGAG
1 -ATTTGTATGTAGTTTAAAGGTGGAGAAGAG
*
11858498 ATTTGTATGTAGTTTAAAGGTGGATAAGAG
1 ATTTGTATGTAGTTTAAAGGTGGAGAAGAG
11858528 ATTTG
1 ATTTG
11858533 GATTACCCCC
Statistics
Matches: 60, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
28 21 0.35
29 2 0.03
30 34 0.57
31 3 0.05
ACGTcount: A:0.31, C:0.00, G:0.30, T:0.39
Consensus pattern (30 bp):
ATTTGTATGTAGTTTAAAGGTGGAGAAGAG
Found at i:11859570 original size:18 final size:17
Alignment explanation
Indices: 11859543--11859579 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
11859533 TAATAAATAC
*
11859543 AAAAAAAAAATATTTTA
1 AAAAAAAAAAAATTTTA
11859560 AAAATAAAAAAAATTTTA
1 AAAA-AAAAAAAATTTTA
11859578 AA
1 AA
11859580 GTATTTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (17 bp):
AAAAAAAAAAAATTTTA
Found at i:11862857 original size:12 final size:12
Alignment explanation
Indices: 11862840--11862871 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
11862830 ATTATGACAT
11862840 AAAAAATTAATA
1 AAAAAATTAATA
*
11862852 AAAAAATTGATA
1 AAAAAATTAATA
11862864 AAAAAATT
1 AAAAAATT
11862872 TAAGAATACT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (12 bp):
AAAAAATTAATA
Found at i:11863067 original size:15 final size:15
Alignment explanation
Indices: 11863012--11863098 Score: 70
Period size: 15 Copynumber: 5.5 Consensus size: 15
11863002 TTTATATTAC
11863012 AAAATATTTATTATT
1 AAAATATTTATTATT
** *
11863027 AATGTATTTATAATTGT
1 AAAATATTTATTA-T-T
11863044 AATAAATATTTATTATT
1 -A-AAATATTTATTATT
*
11863061 AAAATA-TTAATA-T
1 AAAATATTTATTATT
11863074 AATACATATTTATTATT
1 AA-A-ATATTTATTATT
11863091 AAAATATT
1 AAAATATT
11863099 AATATTGAAT
Statistics
Matches: 56, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
13 3 0.05
14 6 0.11
15 23 0.41
16 8 0.14
17 5 0.09
18 2 0.04
19 9 0.16
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.49
Consensus pattern (15 bp):
AAAATATTTATTATT
Found at i:11863083 original size:30 final size:30
Alignment explanation
Indices: 11863043--11863103 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
11863033 TTTATAATTG
11863043 TAATAAATATTTATTATTAAAATATTAATA
1 TAATAAATATTTATTATTAAAATATTAATA
*
11863073 TAATACATATTTATTATTAAAATATTAATA
1 TAATAAATATTTATTATTAAAATATTAATA
11863103 T
1 T
11863104 TGAATATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48
Consensus pattern (30 bp):
TAATAAATATTTATTATTAAAATATTAATA
Found at i:11875034 original size:40 final size:39
Alignment explanation
Indices: 11874990--11875085 Score: 106
Period size: 40 Copynumber: 2.4 Consensus size: 39
11874980 TGCAGGCAAG
11874990 GGCACAAATGTG-AAATCAG-GGACACCGAAGTGCAAACAGA
1 GGCACAAA-GTGCAAA-CAGAGG-CACCGAAGTGCAAACAGA
* *
11875030 GGCACCAAAGTGCAAAGAGAGGCACCGAAGTGCAAATAGA
1 GGCA-CAAAGTGCAAACAGAGGCACCGAAGTGCAAACAGA
*
11875070 GGCACTGAAGTGCAAA
1 GGCAC-AAAGTGCAAA
11875086 TCCTATACAA
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
39 1 0.02
40 39 0.80
41 9 0.18
ACGTcount: A:0.42, C:0.20, G:0.29, T:0.09
Consensus pattern (39 bp):
GGCACAAAGTGCAAACAGAGGCACCGAAGTGCAAACAGA
Found at i:11875086 original size:20 final size:20
Alignment explanation
Indices: 11875012--11875086 Score: 114
Period size: 20 Copynumber: 3.8 Consensus size: 20
11875002 AAATCAGGGA
*
11875012 CACCGAAGTGCAAACAGAGG
1 CACCGAAGTGCAAATAGAGG
* *
11875032 CACCAAAGTGCAAAGAGAGG
1 CACCGAAGTGCAAATAGAGG
11875052 CACCGAAGTGCAAATAGAGG
1 CACCGAAGTGCAAATAGAGG
*
11875072 CACTGAAGTGCAAAT
1 CACCGAAGTGCAAAT
11875087 CCTATACAAT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 50 1.00
ACGTcount: A:0.41, C:0.21, G:0.28, T:0.09
Consensus pattern (20 bp):
CACCGAAGTGCAAATAGAGG
Found at i:11880394 original size:27 final size:27
Alignment explanation
Indices: 11880341--11880394 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
11880331 ACGATTTTCA
*
11880341 CAATTTAGCTACATTTTTGCACTGATT
1 CAATTTAGCTACATTTTTCCACTGATT
11880368 CAATTTAGTCCTA-ATTTTTCCAC-GATT
1 CAATTTAG--CTACATTTTTCCACTGATT
11880395 TAAAGAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 12 0.50
28 9 0.38
29 3 0.12
ACGTcount: A:0.26, C:0.20, G:0.09, T:0.44
Consensus pattern (27 bp):
CAATTTAGCTACATTTTTCCACTGATT
Found at i:11883440 original size:29 final size:29
Alignment explanation
Indices: 11883403--11883505 Score: 98
Period size: 29 Copynumber: 3.4 Consensus size: 29
11883393 TGAGCTTTTT
* * *
11883403 TGGCTATCTCTGGTATAAAGAAGTCTTTG
1 TGGCGATCTCTGTTATAAAGAAGCCTTTG
*
11883432 TGGTGATCTCTGTTATAAGGAAGTAAAGCCTTTG
1 TGGCGATCTCTGTTAT-A--AAG--AAGCCTTTG
*
11883466 TGGCGATCTCTGTTATAAGGAAGCCTTTG
1 TGGCGATCTCTGTTATAAAGAAGCCTTTG
* *
11883495 TGACTATCTCT
1 TGGCGATCTCT
11883506 TAATGAATGC
Statistics
Matches: 61, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
29 31 0.51
30 1 0.02
31 2 0.03
32 3 0.05
33 1 0.02
34 23 0.38
ACGTcount: A:0.23, C:0.16, G:0.24, T:0.37
Consensus pattern (29 bp):
TGGCGATCTCTGTTATAAAGAAGCCTTTG
Found at i:11885614 original size:16 final size:17
Alignment explanation
Indices: 11885593--11885637 Score: 56
Period size: 19 Copynumber: 2.6 Consensus size: 17
11885583 ATAAAACAAT
*
11885593 TTAAAATAAT-TTAATA
1 TTAAAATAATAATAATA
11885609 TTAAAATAATAAAATAATA
1 TTAAAATAAT--AATAATA
11885628 TTAAAATAAT
1 TTAAAATAAT
11885638 CAAAACAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 10 0.40
19 15 0.60
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TTAAAATAATAATAATA
Found at i:11885626 original size:19 final size:20
Alignment explanation
Indices: 11885604--11885647 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
11885594 TAAAATAATT
11885604 TAATATTAAAATAAT-AAAA
1 TAATATTAAAATAATCAAAA
11885623 TAATATTAAAATAATCAAAA
1 TAATATTAAAATAATCAAAA
*
11885643 CAATA
1 TAATA
11885648 ATCTTTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.30
Consensus pattern (20 bp):
TAATATTAAAATAATCAAAA
Found at i:11886622 original size:19 final size:18
Alignment explanation
Indices: 11886598--11886632 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
11886588 AACAAATAAT
*
11886598 TTAAAATTTATAAAAAAA
1 TTAAAAATTATAAAAAAA
11886616 TTAAAAATTATAAAAAA
1 TTAAAAATTATAAAAAA
11886633 GTACAAAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TTAAAAATTATAAAAAAA
Found at i:11890648 original size:9 final size:9
Alignment explanation
Indices: 11890634--11890664 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
11890624 GTTAAACGAA
11890634 TCGAGTTAT
1 TCGAGTTAT
*
11890643 TCGAGTTAA
1 TCGAGTTAT
11890652 TCGAGTTAT
1 TCGAGTTAT
11890661 TCGA
1 TCGA
11890665 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:11892502 original size:29 final size:29
Alignment explanation
Indices: 11892439--11892511 Score: 69
Period size: 29 Copynumber: 2.6 Consensus size: 29
11892429 TATAAAGGCT
* * **
11892439 TATTCTTGTAAATTTATAAAAAATTGGTC
1 TATTTTTGTAAATTTATAAAAAAATGACC
11892468 TATTTTTGTAATATTT-TAAAAAAATGACC
1 TATTTTTGTAA-ATTTATAAAAAAATGACC
* *
11892497 T-CTTTTGAAAATTTA
1 TATTTTTGTAAATTTA
11892512 GTCTGAGCAC
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
27 4 0.11
28 7 0.19
29 21 0.58
30 4 0.11
ACGTcount: A:0.38, C:0.07, G:0.08, T:0.47
Consensus pattern (29 bp):
TATTTTTGTAAATTTATAAAAAAATGACC
Found at i:11905905 original size:40 final size:40
Alignment explanation
Indices: 11905850--11905971 Score: 244
Period size: 40 Copynumber: 3.0 Consensus size: 40
11905840 CTTAAACTCA
11905850 CTTTTCTAGTCAACAACACGATGGAGCAAACAAATTGGTG
1 CTTTTCTAGTCAACAACACGATGGAGCAAACAAATTGGTG
11905890 CTTTTCTAGTCAACAACACGATGGAGCAAACAAATTGGTG
1 CTTTTCTAGTCAACAACACGATGGAGCAAACAAATTGGTG
11905930 CTTTTCTAGTCAACAACACGATGGAGCAAACAAATTGGTG
1 CTTTTCTAGTCAACAACACGATGGAGCAAACAAATTGGTG
11905970 CT
1 CT
11905972 AACTTACTCA
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 82 1.00
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.25
Consensus pattern (40 bp):
CTTTTCTAGTCAACAACACGATGGAGCAAACAAATTGGTG
Found at i:11912610 original size:36 final size:36
Alignment explanation
Indices: 11912570--11912640 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 36
11912560 GGAGCACATC
* *
11912570 AGTCAGAATAGATCCGAAAGACTGCTGAACTGAATT
1 AGTCAGAATAGATCCAAAAGACTACTGAACTGAATT
11912606 AGTCAGAATAGATCCAAAAGACTACTGAACTGAAT
1 AGTCAGAATAGATCCAAAAGACTACTGAACTGAAT
11912641 AGAGTTTACT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.42, C:0.17, G:0.20, T:0.21
Consensus pattern (36 bp):
AGTCAGAATAGATCCAAAAGACTACTGAACTGAATT
Found at i:11916304 original size:23 final size:22
Alignment explanation
Indices: 11916264--11916323 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 22
11916254 AATTATTGTA
* * * *
11916264 ATTATAATTTAAGATCAAATATT
1 ATTATAA-TTATGGTCAAACATC
11916287 ATTATAATTACTGGTCAAACATC
1 ATTATAATTA-TGGTCAAACATC
11916310 ATTATAATTATGGT
1 ATTATAATTATGGT
11916324 AATTATAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
22 7 0.22
23 25 0.78
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (22 bp):
ATTATAATTATGGTCAAACATC
Found at i:11918279 original size:21 final size:20
Alignment explanation
Indices: 11918240--11918283 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
11918230 GAATCTTGTG
*
11918240 ATTTTTTATGTTAAATGATGA
1 ATTTTTAATGTTAAATGAT-A
* *
11918261 ATTTTTAATGTTGATTGATA
1 ATTTTTAATGTTAAATGATA
11918281 ATT
1 ATT
11918284 AAAATTATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.55
Consensus pattern (20 bp):
ATTTTTAATGTTAAATGATA
Found at i:11930347 original size:20 final size:20
Alignment explanation
Indices: 11930319--11930462 Score: 128
Period size: 20 Copynumber: 7.2 Consensus size: 20
11930309 TACCGAAGTA
*
11930319 CAAACAGGGGCACGTATGTG
1 CAAATAGGGGCACGTATGTG
*
11930339 CAAATAGGGGCACGTACGTG
1 CAAATAGGGGCACGTATGTG
*
11930359 CAAATAGGGGCACGTACGTG
1 CAAATAGGGGCACGTATGTG
* * * * *
11930379 CAAACAGGGGTATC-AAAGTA
1 CAAATAGGGGCA-CGTATGTG
* *
11930399 CAAATAGGGGCGCGTATATG
1 CAAATAGGGGCACGTATGTG
* ** * *
11930419 CAAATAGGGGTACCAAAGTA
1 CAAATAGGGGCACGTATGTG
*
11930439 CAAACAGGGGCACGTATGTG
1 CAAATAGGGGCACGTATGTG
11930459 CAAA
1 CAAA
11930463 CATTCAACAA
Statistics
Matches: 95, Mismatches: 27, Indels: 4
0.75 0.21 0.03
Matches are distributed among these distances:
19 1 0.01
20 93 0.98
21 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.31, T:0.15
Consensus pattern (20 bp):
CAAATAGGGGCACGTATGTG
Found at i:11930369 original size:40 final size:39
Alignment explanation
Indices: 11930314--11930462 Score: 181
Period size: 40 Copynumber: 3.7 Consensus size: 39
11930304 CAGGGTACCG
* *
11930314 AAGTACAAACAGGGGCACGTATGTGCAAATAGGGGCACGT
1 AAGTACAAACAGGGGCACGTATGTGCAAATAGGGGTAC-A
* * * * *
11930354 ACGTGCAAATAGGGGCACGTACGTGCAAACAGGGGTATCA
1 AAGTACAAACAGGGGCACGTATGTGCAAATAGGGGTA-CA
* * *
11930394 AAGTACAAATAGGGGCGCGTATATGCAAATAGGGGTACCA
1 AAGTACAAACAGGGGCACGTATGTGCAAATAGGGGTA-CA
11930434 AAGTACAAACAGGGGCACGTATGTGCAAA
1 AAGTACAAACAGGGGCACGTATGTGCAAA
11930463 CATTCAACAA
Statistics
Matches: 91, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 90 0.99
41 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.31, T:0.15
Consensus pattern (39 bp):
AAGTACAAACAGGGGCACGTATGTGCAAATAGGGGTACA
Found at i:11930422 original size:80 final size:80
Alignment explanation
Indices: 11930314--11930464 Score: 212
Period size: 80 Copynumber: 1.9 Consensus size: 80
11930304 CAGGGTACCG
* ** * * *
11930314 AAGTACAAACAGGGGCACGTATGTGCAAATAGGGGCACGTACGTGCAAATAGGGGCACGTACGTG
1 AAGTACAAACAGGGGCACGTATATGCAAATAGGGGCACCAAAGTACAAACAGGGGCACGTACGTG
11930379 CAAACAGGGGTATCA
66 CAAACAGGGGTATCA
* * * *
11930394 AAGTACAAATAGGGGCGCGTATATGCAAATAGGGGTACCAAAGTACAAACAGGGGCACGTATGTG
1 AAGTACAAACAGGGGCACGTATATGCAAATAGGGGCACCAAAGTACAAACAGGGGCACGTACGTG
11930459 CAAACA
66 CAAACA
11930465 TTCAACAATT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 61 1.00
ACGTcount: A:0.36, C:0.18, G:0.30, T:0.15
Consensus pattern (80 bp):
AAGTACAAACAGGGGCACGTATATGCAAATAGGGGCACCAAAGTACAAACAGGGGCACGTACGTG
CAAACAGGGGTATCA
Found at i:11930443 original size:60 final size:60
Alignment explanation
Indices: 11930306--11930452 Score: 161
Period size: 60 Copynumber: 2.5 Consensus size: 60
11930296 AACGTATTCA
* * * * *
11930306 GGGTACCGAAGTACAAACAGGGGCACGTATGTGCAAATAGGGGCACGTACGTGCAAATAG
1 GGGTACCAAAGTACAAACAGGGGCACGAAAGTACAAATAGGGGCACGTACATGCAAATAG
* ** * * * * *
11930366 GGGCACGTACGTGCAAACAGGGGTATC-AAAGTACAAATAGGGGCGCGTATATGCAAATAG
1 GGGTACCAAAGTACAAACAGGGGCA-CGAAAGTACAAATAGGGGCACGTACATGCAAATAG
11930426 GGGTACCAAAGTACAAACAGGGGCACG
1 GGGTACCAAAGTACAAACAGGGGCACG
11930453 TATGTGCAAA
Statistics
Matches: 67, Mismatches: 18, Indels: 4
0.75 0.20 0.04
Matches are distributed among these distances:
59 1 0.01
60 65 0.97
61 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.33, T:0.14
Consensus pattern (60 bp):
GGGTACCAAAGTACAAACAGGGGCACGAAAGTACAAATAGGGGCACGTACATGCAAATAG
Found at i:11936859 original size:46 final size:46
Alignment explanation
Indices: 11936792--11936885 Score: 161
Period size: 46 Copynumber: 2.0 Consensus size: 46
11936782 TTCAATTGGG
* *
11936792 TTTATCATCCATCTCAACATAACATATTTTCCATATAGCTCACCAT
1 TTTATCACCCATCTCAACATAACATATTTTACATATAGCTCACCAT
*
11936838 TTTATCACCCATCTCAACATAACATATTTTACATGTAGCTCACCAT
1 TTTATCACCCATCTCAACATAACATATTTTACATATAGCTCACCAT
11936884 TT
1 TT
11936886 CAAAGTCTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.32, C:0.28, G:0.03, T:0.37
Consensus pattern (46 bp):
TTTATCACCCATCTCAACATAACATATTTTACATATAGCTCACCAT
Found at i:11937908 original size:18 final size:18
Alignment explanation
Indices: 11937885--11937922 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
11937875 AAAAATCACT
11937885 TAACAA-AATACTTTTAAA
1 TAACAACAATA-TTTTAAA
11937903 TAACAACTAATATTTTAAA
1 TAACAAC-AATATTTTAAA
11937922 T
1 T
11937923 TCATCATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 8 0.44
20 4 0.22
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.37
Consensus pattern (18 bp):
TAACAACAATATTTTAAA
Found at i:11940036 original size:24 final size:24
Alignment explanation
Indices: 11940009--11940055 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
11939999 ATTATGAACT
*
11940009 TTTATTCATACCTTCATAAGTTTC
1 TTTATTCATACCCTCATAAGTTTC
*
11940033 TTTATTCATACCCTCATGAGTTT
1 TTTATTCATACCCTCATAAGTTT
11940056 ATACTCATCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.21, G:0.06, T:0.49
Consensus pattern (24 bp):
TTTATTCATACCCTCATAAGTTTC
Found at i:11948273 original size:20 final size:20
Alignment explanation
Indices: 11948248--11948291 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
11948238 TACGTATGTG
11948248 CAAACAGGAGTACCAAAGTA
1 CAAACAGGAGTACCAAAGTA
**
11948268 CAAACAGGAGTACTGAAGTA
1 CAAACAGGAGTACCAAAGTA
11948288 CAAA
1 CAAA
11948292 TAGGGGCATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.50, C:0.18, G:0.20, T:0.11
Consensus pattern (20 bp):
CAAACAGGAGTACCAAAGTA
Found at i:11948292 original size:60 final size:59
Alignment explanation
Indices: 11948213--11948336 Score: 144
Period size: 60 Copynumber: 2.1 Consensus size: 59
11948203 AAAATGCGTT
11948213 CAGGGTACCGAAGTACAAATA-AGG-ATACGTATGTGCAAACAGGAGTACCAAAGTACAAA
1 CAGGGTACCGAAGTACAAATAGAGGCATA--TATGTGCAAACAGGAGTACCAAAGTACAAA
* * * * * *
11948272 CAGGAGTACTGAAGTACAAATAGGGGCATATATGTGCAAATAGGGGTACCGAAGTATAAA
1 CAGG-GTACCGAAGTACAAATAGAGGCATATATGTGCAAACAGGAGTACCAAAGTACAAA
*
11948332 TAGGG
1 CAGGG
11948337 GCACTTATGT
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
59 5 0.09
60 45 0.82
61 2 0.04
62 3 0.05
ACGTcount: A:0.41, C:0.14, G:0.27, T:0.18
Consensus pattern (59 bp):
CAGGGTACCGAAGTACAAATAGAGGCATATATGTGCAAACAGGAGTACCAAAGTACAAA
Found at i:11948337 original size:40 final size:40
Alignment explanation
Indices: 11948268--11948371 Score: 129
Period size: 40 Copynumber: 2.6 Consensus size: 40
11948258 TACCAAAGTA
* *
11948268 CAAACAGGAGTACTGAAGTACAAATAGGGGCA-TATATGTG
1 CAAACAGGGGTACCGAAGTACAAATAGGGGCACT-TATGTG
* *
11948308 CAAATAGGGGTACCGAAGTATAAATAGGGGCACTTATGTG
1 CAAACAGGGGTACCGAAGTACAAATAGGGGCACTTATGTG
* * *
11948348 CTAACAGGGGTATCGAAGTGCAAA
1 CAAACAGGGGTACCGAAGTACAAA
11948372 CTAAGAAACC
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
40 53 0.98
41 1 0.02
ACGTcount: A:0.38, C:0.13, G:0.29, T:0.20
Consensus pattern (40 bp):
CAAACAGGGGTACCGAAGTACAAATAGGGGCACTTATGTG
Found at i:11950653 original size:21 final size:21
Alignment explanation
Indices: 11950614--11950659 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
11950604 AGTGTAAATC
*
11950614 GGGGCACGTATGCGCAATTTA
1 GGGGCACGTATGCGCAATTCA
* *
11950635 GGGGCACGTATGTGTAATTCA
1 GGGGCACGTATGCGCAATTCA
11950656 GGGG
1 GGGG
11950660 ATAATTAACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.22, C:0.15, G:0.39, T:0.24
Consensus pattern (21 bp):
GGGGCACGTATGCGCAATTCA
Found at i:11955250 original size:18 final size:18
Alignment explanation
Indices: 11955227--11955266 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
11955217 TGTTGGAATG
11955227 AATGTTTAGATTTGGATA
1 AATGTTTAGATTTGGATA
11955245 AATGTTTAGATTTGGATA
1 AATGTTTAGATTTGGATA
11955263 AATG
1 AATG
11955267 GGATATATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (18 bp):
AATGTTTAGATTTGGATA
Found at i:11955278 original size:19 final size:18
Alignment explanation
Indices: 11955233--11955278 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
11955223 AATGAATGTT
**
11955233 TAGATTTGGATAAATGTT
1 TAGATTTGGATAAATGGA
11955251 TAGATTTGGATAAATGGGA
1 TAGATTTGGATAAAT-GGA
*
11955270 TATATTTGG
1 TAGATTTGG
11955279 CATGTGATTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 15 0.62
19 9 0.38
ACGTcount: A:0.33, C:0.00, G:0.26, T:0.41
Consensus pattern (18 bp):
TAGATTTGGATAAATGGA
Found at i:11963603 original size:16 final size:16
Alignment explanation
Indices: 11963582--11963613 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
11963572 GTTTTGTTGC
*
11963582 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
11963598 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
11963614 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:11968480 original size:16 final size:16
Alignment explanation
Indices: 11968459--11968490 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
11968449 GTTTTGTTGC
*
11968459 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
11968475 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
11968491 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:11968775 original size:50 final size:50
Alignment explanation
Indices: 11968718--11968894 Score: 230
Period size: 50 Copynumber: 3.5 Consensus size: 50
11968708 CCAGTTCACA
*
11968718 TAGTAGCCTACACATAGTACTACACATGCGACCTATCATTCTAGTACACG
1 TAGTAGCCTGCACATAGTACTACACATGCGACCTATCATTCTAGTACACG
* * ** * * ** * *
11968768 TAGTAGCCTGCACATAGTACTACACACGTGATCGAAGC-TACCCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACATGCGA-CCTATCAT-TCTAGTACACG
11968819 TAGTAGCCTGCACATAGTACTACACATGCGACCTATCATTCTAGTACACG
1 TAGTAGCCTGCACATAGTACTACACATGCGACCTATCATTCTAGTACACG
11968869 TAGTAGCCTGCACATAGTACTACACA
1 TAGTAGCCTGCACATAGTACTACACA
11968895 CGTGACCATC
Statistics
Matches: 103, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
50 64 0.62
51 39 0.38
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACATGCGACCTATCATTCTAGTACACG
Found at i:11968891 original size:101 final size:101
Alignment explanation
Indices: 11968716--11968899 Score: 359
Period size: 101 Copynumber: 1.8 Consensus size: 101
11968706 TACCAGTTCA
11968716 CATAGTAGCCTACACATAGTACTACACATGCGACCTATCATTCTAGTACACGTAGTAGCCTGCAC
1 CATAGTAGCCTACACATAGTACTACACATGCGACCTATCATTCTAGTACACGTAGTAGCCTGCAC
11968781 ATAGTACTACACACGTGATCGAAGCTACCCGGTACG
66 ATAGTACTACACACGTGATCGAAGCTACCCGGTACG
*
11968817 CATAGTAGCCTGCACATAGTACTACACATGCGACCTATCATTCTAGTACACGTAGTAGCCTGCAC
1 CATAGTAGCCTACACATAGTACTACACATGCGACCTATCATTCTAGTACACGTAGTAGCCTGCAC
11968882 ATAGTACTACACACGTGA
66 ATAGTACTACACACGTGA
11968900 CCATCACTTT
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
101 82 1.00
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.23
Consensus pattern (101 bp):
CATAGTAGCCTACACATAGTACTACACATGCGACCTATCATTCTAGTACACGTAGTAGCCTGCAC
ATAGTACTACACACGTGATCGAAGCTACCCGGTACG
Found at i:11975031 original size:11 final size:11
Alignment explanation
Indices: 11975015--11975039 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
11975005 TTAATATTAA
11975015 AATATTAAAAT
1 AATATTAAAAT
11975026 AATATTAAAAT
1 AATATTAAAAT
11975037 AAT
1 AAT
11975040 CAAAACAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
AATATTAAAAT
Found at i:11976108 original size:23 final size:22
Alignment explanation
Indices: 11976068--11976111 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
11976058 AAATTATAAA
*
11976068 ATATAAAAATATATATATGTAC
1 ATATAAAAAAATATATATGTAC
11976090 ATATAAGAAAAATATATATGTA
1 ATATAA-AAAAATATATATGTA
11976112 TGTGAATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.34
Consensus pattern (22 bp):
ATATAAAAAAATATATATGTAC
Found at i:11976136 original size:9 final size:9
Alignment explanation
Indices: 11976122--11976159 Score: 67
Period size: 9 Copynumber: 4.1 Consensus size: 9
11976112 TGTGAATTAT
11976122 AAAAAATAA
1 AAAAAATAA
11976131 AAAAAATAA
1 AAAAAATAA
11976140 AAAAAATAA
1 AAAAAATAA
11976149 AAAAATATAA
1 AAAAA-ATAA
11976159 A
1 A
11976160 TATACATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
9 23 0.82
10 5 0.18
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (9 bp):
AAAAAATAA
Found at i:11976582 original size:23 final size:23
Alignment explanation
Indices: 11976556--11976600 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
11976546 AAGAGATTTC
* *
11976556 AAATCAACAATATACAAATCAAT
1 AAATAAACAATACACAAATCAAT
**
11976579 AAATAAATTATACACAAATCAA
1 AAATAAACAATACACAAATCAA
11976601 CAAAATAAGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.62, C:0.16, G:0.00, T:0.22
Consensus pattern (23 bp):
AAATAAACAATACACAAATCAAT
Found at i:11976834 original size:23 final size:22
Alignment explanation
Indices: 11976791--11976848 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
11976781 AAAGGATATC
* *
11976791 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
11976812 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
11976835 TGCATATCATATCT
1 TACAAATCATATCT
11976849 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:11977371 original size:41 final size:43
Alignment explanation
Indices: 11977323--11977432 Score: 113
Period size: 41 Copynumber: 2.6 Consensus size: 43
11977313 GATCTACTCT
*
11977323 ACTGCAACTTCAGAGAGATAAGATCTA-T-TTTAATCCGCTCC
1 ACTGCAACTTCAGAGAGATAAGATCTACTGTTCAATCCGCTCC
* *
11977364 ACTGCAACTTCA-AGGAGATAGGAT-TACTGGCTTCAATCTGCTCC
1 ACTGCAACTTCAGA-GAGATAAGATCTACT-G-TTCAATCCGCTCC
* *
11977408 ACTGCAACTT-AGGGAGATAAAATCT
1 ACTGCAACTTCAGAGAGATAAGATCT
11977433 GTAATTTTCA
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
40 3 0.05
41 22 0.39
43 9 0.16
44 22 0.39
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (43 bp):
ACTGCAACTTCAGAGAGATAAGATCTACTGTTCAATCCGCTCC
Found at i:11977649 original size:34 final size:36
Alignment explanation
Indices: 11977605--11977930 Score: 187
Period size: 44 Copynumber: 8.1 Consensus size: 36
11977595 GGTTCACTAT
*
11977605 CTTCAACCTATTCCACTACTGACCAGGGAGATAGGA
1 CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
*
11977641 -TTC-ACCTATTCCACTACTGACCAGGGAGATAGGACTTACAA
1 CTTCAACCTATTCCACTGCTGACCAGGGAGATAGG-------A
*
11977682 TCTTCAACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAA
1 -CTTCAACCTATTCCACTGCTGACCAGGGAGATAGG-------A
*
11977726 TCTTCAACCTATTCCACTGCTGACCAGGGAGATCGGA
1 -CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
*
11977763 -TTC-ACCTATTCCACTGCTGACTAGGGAGATAGGA
1 CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
*
11977797 CTTACAATTTTCAATCTCTTCCACTGCTGACCAGGGAGATAGGACTCACAA
1 CTT-CAA----C---CTATTCCACTGCTGACCAGGGAGATAGG-------A
11977848 TCTTCAACC-ATTCCACTGCTGACCAGGGAGATAGGATTCACAA
1 -CTTCAACCTATTCCACTGCTGACCAGGGAGATAGG-------A
11977891 TCTTCAACCTATTCCACTGCTGACCAGGGA-AGTAGGA
1 -CTTCAACCTATTCCACTGCTGACCAGGGAGA-TAGGA
11977928 CTT
1 CTT
11977931 ACAATCTTCA
Statistics
Matches: 250, Mismatches: 10, Indels: 60
0.78 0.03 0.19
Matches are distributed among these distances:
34 59 0.24
35 8 0.03
36 4 0.02
37 3 0.01
41 2 0.01
43 45 0.18
44 121 0.48
47 1 0.00
51 4 0.02
52 3 0.01
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (36 bp):
CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
Found at i:11977697 original size:78 final size:81
Alignment explanation
Indices: 11977603--11977968 Score: 348
Period size: 78 Copynumber: 4.4 Consensus size: 81
11977593 CAGGTTCACT
* *
11977603 ATCTTCAACCTATTCCACTACTGACCAGGGAGATAGG-A-TTC-ACCTATTCCACTACTGACCAG
1 ATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGAACTTCAACCTATTCCACTGCTGACCAG
11977665 GGAGATAGGACTTACA
66 GGAGATAGGACTTACA
*
11977681 ATCTTCAACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGC
1 ATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGG------AA-CTTCAACCTATTCCACTGC
*
11977746 TGACCAGGGAGATCGG-------
59 TGACCAGGGAGATAGGACTTACA
* * *
11977762 A--TTC-ACCTATTCCACTGCTGACTAGGGAGATAGGACTTACAATTTTCAATCTCTTCCACTGC
1 ATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA---AC----TTCAACCTATTCCACTGC
*
11977824 TGACCAGGGAGATAGGACTCACA
59 TGACCAGGGAGATAGGACTTACA
11977847 ATCTTCAACC-ATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGC
1 ATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGG------AA-CTTCAACCTATTCCACTGC
11977911 TGACCAGGGA-AGTAGGACTTACA
59 TGACCAGGGAGA-TAGGACTTACA
*
11977934 ATCTTCAACCTATTCCACTACTGACCAGGGAGATA
1 ATCTTCAACCTATTCCACTGCTGACCAGGGAGATA
11977969 AAGCTTTGTG
Statistics
Matches: 238, Mismatches: 14, Indels: 62
0.76 0.04 0.20
Matches are distributed among these distances:
72 1 0.00
74 1 0.00
75 1 0.00
78 94 0.39
79 3 0.01
81 1 0.00
85 2 0.01
86 1 0.00
87 77 0.32
88 54 0.23
90 1 0.00
91 1 0.00
93 1 0.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (81 bp):
ATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGAACTTCAACCTATTCCACTGCTGACCAG
GGAGATAGGACTTACA
Found at i:11977708 original size:44 final size:44
Alignment explanation
Indices: 11977644--11977968 Score: 460
Period size: 44 Copynumber: 7.6 Consensus size: 44
11977634 GATAGGATTC
*
11977644 ACCTATTCCACTACTGACCAGGGAGATAGGACTTACAATCTTCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCA
*
11977688 ACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATCTTCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCA
*
11977732 ACCTATTCCACTGCTGACCAGGGAGATCGG-------A--TTC-
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCA
* *
11977766 ACCTATTCCACTGCTGACTAGGGAGATAGGACTTACAATTTTCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCA
* * *
11977810 ATCTCTTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCA
11977854 ACC-ATTCCACTGCTGACCAGGGAGATAGGA-TTCACAATCTTCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTT-ACAATCTTCA
11977897 ACCTATTCCACTGCTGACCAGGGA-AGTAGGACTTACAATCTTCA
1 ACCTATTCCACTGCTGACCAGGGAGA-TAGGACTTACAATCTTCA
*
11977941 ACCTATTCCACTACTGACCAGGGAGATA
1 ACCTATTCCACTGCTGACCAGGGAGATA
11977969 AAGCTTTGTG
Statistics
Matches: 251, Mismatches: 15, Indels: 30
0.85 0.05 0.10
Matches are distributed among these distances:
34 28 0.11
35 3 0.01
37 1 0.00
41 1 0.00
42 1 0.00
43 43 0.17
44 171 0.68
45 3 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (44 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCA
Found at i:11977820 original size:122 final size:122
Alignment explanation
Indices: 11977598--11977968 Score: 530
Period size: 122 Copynumber: 3.0 Consensus size: 122
11977588 CTGCTCAGGT
* * *
11977598 TCACTATCTTCAACCTATTCCACTACTGACCAGGGAGATAGGATTCACCTATTCCACTACTGACC
1 TCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCTATTCCACTGCTGACC
*
11977663 AGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTAACCAGGGAGATAGGAC
66 AGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGAC
* * *
11977720 TTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATCGGATTCACCTATTCCACTGCTGACT
1 TCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCTATTCCACTGCTGACC
* * *
11977785 AGGGAGATAGGACTTACAATTTTCAATCTCTTCCACTGCTGACCAGGGAGATAGGAC
66 AGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGAC
11977842 TCACAATCTTCAACC-ATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCC
1 TCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGG-------A--TTC-ACCTATTCC
*
11977906 ACTGCTGACCAGGGA-AGTAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATA
56 ACTGCTGACCAGGGAGA-TAGGACTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATA
11977969 AAGCTTTGTG
Statistics
Matches: 221, Mismatches: 17, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
121 25 0.11
122 126 0.57
128 1 0.00
130 4 0.02
131 65 0.29
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (122 bp):
TCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCTATTCCACTGCTGACC
AGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGAC
Found at i:11977878 original size:87 final size:88
Alignment explanation
Indices: 11977766--11977968 Score: 313
Period size: 87 Copynumber: 2.3 Consensus size: 88
11977756 GATCGGATTC
* * * *
11977766 ACCTATTCCACTGCTGACTAGGGAGATAGGACTT-ACAATTTTCAATCTCTTCCACTGCTGACCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTGCTGACCA
11977830 GGG-AGATAGGACTCACAATCTTCA
65 GGGAAG-TAGGACTCACAATCTTCA
11977854 ACC-ATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAG
*
11977918 GGAAGTAGGACTTACAATCTTCA
66 GGAAGTAGGACTCACAATCTTCA
*
11977941 ACCTATTCCACTACTGACCAGGGAGATA
1 ACCTATTCCACTGCTGACCAGGGAGATA
11977969 AAGCTTTGTG
Statistics
Matches: 106, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
86 2 0.02
87 76 0.72
88 28 0.26
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (88 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAG
GGAAGTAGGACTCACAATCTTCA
Found at i:11979269 original size:16 final size:16
Alignment explanation
Indices: 11979234--11979278 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
11979224 GCCTCTCCTG
* **
11979234 TTTCTTTTTTTTTCTT
1 TTTCTTTTTTTATCAC
11979250 TTTCTTTTTTTATCAC
1 TTTCTTTTTTTATCAC
*
11979266 TTTCATTTTTTAT
1 TTTCTTTTTTTAT
11979279 TTTGATTTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.09, C:0.13, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTCTTTTTTTATCAC
Found at i:11980130 original size:25 final size:25
Alignment explanation
Indices: 11980077--11980142 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
11980067 AAGAAAATCC
* *
11980077 AAAAGAATGAAAGAATAATTATTCG
1 AAAAGAATGAAAGAATAATTACTCA
*
11980102 AAAAGAATGAAAGAAT-ATTGGCTCA
1 AAAAGAATGAAAGAATAATT-ACTCA
11980127 AAAATGAATGCAAAGA
1 AAAA-GAATG-AAAGA
11980143 TGTATTTCAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
24 3 0.09
25 22 0.63
26 5 0.14
27 5 0.14
ACGTcount: A:0.56, C:0.06, G:0.18, T:0.20
Consensus pattern (25 bp):
AAAAGAATGAAAGAATAATTACTCA
Found at i:11984720 original size:23 final size:22
Alignment explanation
Indices: 11984677--11984734 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
11984667 AAAAGATATC
* *
11984677 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
11984698 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
11984721 TGCATATCATATCT
1 TACAAATCATATCT
11984735 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:11991518 original size:113 final size:114
Alignment explanation
Indices: 11991315--11991755 Score: 640
Period size: 114 Copynumber: 3.9 Consensus size: 114
11991305 AAAATAAGCA
* *
11991315 TTAGCGGCGTTTTTGAGAAAGCGCCGCCAAAAAACCTAAGCCCAACGACGTCG-TTTCTCGAGCT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCT-GAGCT
* *
11991379 TTCGGGGATTTAGAGGCGTTTATAAGAAAGCGCCGCTAATGCTCAGGGCT
65 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
* *
11991429 TTAGCGGCGTTTTTG-GGAAGCGCCGCAAAAAAACCTAAGCCCAACGATGCCGTTTTCTGAGCTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* * *
11991493 TCGGGGATTTAGCGGCGTTTTTAAGAATGCGCCGCTAATGCTCGGGGTT
66 TCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
** * * * *
11991542 TTAGCGGTATTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACTCCGTTTTTTAAGCTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
11991607 TCGGGGATTTAGCGGCGTTTTTAAGGAAA-CGCCGCTAATGC-CTAGGGCT
66 TCGGGGATTTAGCGGCGTTTTTAA-GAAAGCGCCGCTAATGCTC-AGGGCT
* *
11991656 TTAGCGACGTTTTTGATAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* *
11991721 TCAGGGATTTAGCGGCGTTTTT-GGAAAAGCGCCGC
66 TCGGGGATTTAGCGGCGTTTTTAAG-AAAGCGCCGC
11991756 AAAAAAACCT
Statistics
Matches: 292, Mismatches: 29, Indels: 12
0.88 0.09 0.04
Matches are distributed among these distances:
112 1 0.00
113 100 0.34
114 188 0.64
115 3 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (114 bp):
TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
TCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
Found at i:11991734 original size:73 final size:73
Alignment explanation
Indices: 11991650--11992539 Score: 1737
Period size: 73 Copynumber: 12.2 Consensus size: 73
11991640 GCTAATGCCT
* *
11991650 AGGGCTTTAGCGACGTTTTT-GATAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTC
1 AGGGATTTAGCGGCGTTTTTGGA-AAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTC
11991714 TGAGCTTTC
65 TGAGCTTTC
11991723 AGGGATTTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCT
1 AGGGATTTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCT
11991788 GAGCTTTC
66 GAGCTTTC
11991796 AGGGATTTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCT
1 AGGGATTTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCT
11991861 GAGCTTTC
66 GAGCTTTC
11991869 AGGGATTTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCT
1 AGGGATTTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCT
11991934 GAGCTTTC
66 GAGCTTTC
11991942 AGGGATTTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCT
1 AGGGATTTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCT
11992007 GAGCTTTC
66 GAGCTTTC
11992015 AGGGATTTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCT
1 AGGGATTTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCT
11992080 GAGCTTTC
66 GAGCTTTC
11992088 AGGGATTTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCT
1 AGGGATTTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCT
11992153 GAGCTTTC
66 GAGCTTTC
11992161 AGGGATTTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCT
1 AGGGATTTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCT
11992226 GAGCTTTC
66 GAGCTTTC
11992234 AGGGATTTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCT
1 AGGGATTTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCT
11992299 GAGCTTTC
66 GAGCTTTC
11992307 AGGGATTTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCT
1 AGGGATTTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCT
11992372 GAGCTTTC
66 GAGCTTTC
11992380 AGGGATTTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCT
1 AGGGATTTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCT
11992445 GAGCTTTC
66 GAGCTTTC
11992453 AGGGATTTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCT
1 AGGGATTTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCT
11992518 GAGCTTTC
66 GAGCTTTC
*
11992526 GGGGATTTAGCGGC
1 AGGGATTTAGCGGC
11992540 NNNNNNNNNN
Statistics
Matches: 813, Mismatches: 3, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
73 811 1.00
74 2 0.00
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.23
Consensus pattern (73 bp):
AGGGATTTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCT
GAGCTTTC
Found at i:11993297 original size:146 final size:147
Alignment explanation
Indices: 11992969--11993314 Score: 613
Period size: 147 Copynumber: 2.4 Consensus size: 147
11992959 NNNNNNNNNT
*
11992969 TTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAAAATTGCGGCGCTTTATAAGAAG
1 TTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGCTTTATAAGAAG
* *
11993034 CGTCGCTAAAGGTAAGCAATAGCGGCATTTTCTATAAAAAAGCCGCAAAAAATAAATCAATTTAT
66 CGCCGCTAAAGGTAAGCAATAGCGGCATTTCCTATAAAAAAGCCGCAAAAAATAAATCAATTTAT
11993099 AAAAAAAATAAAAAAAA
131 AAAAAAAATAAAAAAAA
*
11993116 TTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAG
1 TTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGCTTTATAAGAAG
* *
11993181 CGCCGCTAAAGGTAAGCAATAGCGGCGTTTCCTATAAAAACGCCGCAAAAAATAAATCAATTTAT
66 CGCCGCTAAAGGTAAGCAATAGCGGCATTTCCTATAAAAAAGCCGCAAAAAATAAATCAATTTAT
11993246 AAAAAAAATAAAAAAAA
131 AAAAAAAATAAAAAAAA
* *
11993263 -TTAGAATAGCAAAAAGGCGTCGTTTTGTTGAAAATGAAAAAAATTTGCGGCG
1 TTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAAATTTGCGGCG
11993315 TTTTTAAATT
Statistics
Matches: 190, Mismatches: 9, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
146 49 0.26
147 141 0.74
ACGTcount: A:0.45, C:0.13, G:0.18, T:0.24
Consensus pattern (147 bp):
TTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGCTTTATAAGAAG
CGCCGCTAAAGGTAAGCAATAGCGGCATTTCCTATAAAAAAGCCGCAAAAAATAAATCAATTTAT
AAAAAAAATAAAAAAAA
Found at i:11993395 original size:81 final size:81
Alignment explanation
Indices: 11993247--11993395 Score: 255
Period size: 82 Copynumber: 1.8 Consensus size: 81
11993237 TCAATTTATA
* *
11993247 AAAAAAATAAAAAAAATTAGAATAGCAAAAAGGCGTCGTTTTGTTGAAAATGAAAAAAATTTGCG
1 AAAAAAATAAAAAAAATTAGAATAGCAAAAAGGCGTCGTTTTGTTCAAAATGAAAAAAATTTACG
11993312 GCGTTTTTAAATTTAG
66 GCGTTTTTAAATTTAG
*
11993328 AAAAAAATAAAAAAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAAA-TTAC
1 AAAAAAATAAAAAAAA-TTAGAATAGCAAAAAGGCGTCGTTTTGTTCAAAATGAAAAAAATTTAC
11993392 GGCG
65 GGCG
11993396 CTTTATAAGA
Statistics
Matches: 64, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
81 23 0.36
82 41 0.64
ACGTcount: A:0.50, C:0.08, G:0.17, T:0.26
Consensus pattern (81 bp):
AAAAAAATAAAAAAAATTAGAATAGCAAAAAGGCGTCGTTTTGTTCAAAATGAAAAAAATTTACG
GCGTTTTTAAATTTAG
Found at i:11993481 original size:145 final size:138
Alignment explanation
Indices: 11993321--11993616 Score: 434
Period size: 145 Copynumber: 2.1 Consensus size: 138
11993311 GGCGTTTTTA
* *
11993321 AATTTAGAAAAAAATAAAAAAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATG-AAAA
1 AATTTATAAAAAAATAAAAAAAATTTAGAATAGCAAAACGGCGACGTTTTGTTCAAAATGAAAAA
11993385 AAA-TTACGGCGCTTTATAAGAAGCGCCGCTAAAGGTAACCAATAGCGGCGTTTTCTATAAATAC
66 AAATTTACGGCGCTTTATAAGAAGCGCC-CTAAAGGTAACCAATAGCGGCG-----T-T-AA-AC
11993449 GCCGCAAAAAATAAATC
122 GCCGCAAAAAATAAATC
*
11993466 AATTTATAAAAAAATAAAAAAAATTTAGAATAGCAAAACGGTGACGTTTTGTTCAAAATGAAAAA
1 AATTTATAAAAAAATAAAAAAAATTTAGAATAGCAAAACGGCGACGTTTTGTTCAAAATGAAAAA
** * *
11993531 AAATTTGTGGCGCTTTATAATAAGCGCCTTAAAGGTAACCAATAGCGGCGTTAAACGCCGCAAAA
66 AAATTTACGGCGCTTTATAAGAAGCGCCCTAAAGGTAACCAATAGCGGCGTTAAACGCCGCAAAA
11993596 AATAAATC
131 AATAAATC
11993604 AATTTATAAAAAA
1 AATTTATAAAAAA
11993617 TTTCCCAAAA
Statistics
Matches: 142, Mismatches: 7, Indels: 11
0.89 0.04 0.07
Matches are distributed among these distances:
138 32 0.23
139 2 0.01
140 1 0.01
141 1 0.01
145 57 0.40
146 28 0.20
147 21 0.15
ACGTcount: A:0.47, C:0.14, G:0.16, T:0.24
Consensus pattern (138 bp):
AATTTATAAAAAAATAAAAAAAATTTAGAATAGCAAAACGGCGACGTTTTGTTCAAAATGAAAAA
AAATTTACGGCGCTTTATAAGAAGCGCCCTAAAGGTAACCAATAGCGGCGTTAAACGCCGCAAAA
AATAAATC
Found at i:11993496 original size:227 final size:229
Alignment explanation
Indices: 11993100--11993542 Score: 766
Period size: 227 Copynumber: 1.9 Consensus size: 229
11993090 TCAATTTATA
* *
11993100 AAAAAAATAAAAAAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGC
1 AAAAAAATAAAAAAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATATTAC
*
11993165 GGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTCCTATAAAAACGCCGCAAA
66 GGCGCTTTATAAGAAGCGCCGCTAAAGGTAACCAATAGCGGCGTTTCCTATAAAAACGCCGCAAA
* *
11993230 AAATAAATCAATTTATAAAAAAAATAAAAAAAATTAGAATAGCAAAAAGGCGTCGTTTTGTTGAA
131 AAATAAATCAATTTATAAAAAAAATAAAAAAAATTAGAATAGCAAAAAGGCGACGTTTTGTTCAA
11993295 AATG-AAAAAAATTTGCGGCGTTTTTAAATTTAG
196 AATGAAAAAAAATTTGCGGCGTTTTTAAATTTAG
11993328 AAAAAAATAAAAAAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAA-ATTAC
1 AAAAAAATAAAAAAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATATTAC
* *
11993392 GGCGCTTTATAAGAAGCGCCGCTAAAGGTAACCAATAGCGGCGTTTTCTATAAATACGCCGCAAA
66 GGCGCTTTATAAGAAGCGCCGCTAAAGGTAACCAATAGCGGCGTTTCCTATAAAAACGCCGCAAA
* *
11993457 AAATAAATCAATTTAT-AAAAAAATAAAAAAAATTTAGAATAGCAAAACGGTGACGTTTTGTTCA
131 AAATAAATCAATTTATAAAAAAAATAAAAAAAA-TTAGAATAGCAAAAAGGCGACGTTTTGTTCA
*
11993521 AAATGAAAAAAAATTTGTGGCG
195 AAATGAAAAAAAATTTGCGGCG
11993543 CTTTATAATA
Statistics
Matches: 203, Mismatches: 10, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
226 16 0.08
227 113 0.56
228 74 0.36
ACGTcount: A:0.46, C:0.12, G:0.17, T:0.25
Consensus pattern (229 bp):
AAAAAAATAAAAAAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATATTAC
GGCGCTTTATAAGAAGCGCCGCTAAAGGTAACCAATAGCGGCGTTTCCTATAAAAACGCCGCAAA
AAATAAATCAATTTATAAAAAAAATAAAAAAAATTAGAATAGCAAAAAGGCGACGTTTTGTTCAA
AATGAAAAAAAATTTGCGGCGTTTTTAAATTTAG
Found at i:11995179 original size:16 final size:16
Alignment explanation
Indices: 11995158--11995190 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
11995148 CAGCTGTAAG
11995158 TGTTCTTAACAATTCT
1 TGTTCTTAACAATTCT
11995174 TGTTCTTAACAATTCT
1 TGTTCTTAACAATTCT
11995190 T
1 T
11995191 TGCTTCTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.06, T:0.52
Consensus pattern (16 bp):
TGTTCTTAACAATTCT
Found at i:11995585 original size:6 final size:5
Alignment explanation
Indices: 11995559--11995592 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
11995549 ATTAATGTGG
11995559 TTTTA TTTTA TTTTA TTTTA TTTTTA TTTT- TTTT
1 TTTTA TTTTA TTTTA TTTTA -TTTTA TTTTA TTTT
11995593 GAGGGGGTGC
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 4 0.14
5 19 0.68
6 5 0.18
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (5 bp):
TTTTA
Found at i:11995788 original size:128 final size:129
Alignment explanation
Indices: 11995628--11995884 Score: 491
Period size: 128 Copynumber: 2.0 Consensus size: 129
11995618 GTGATTAAGA
11995628 AAATGTAAATCAGGTATCATCTAGATGCCATTCTGCCCCTGAACTATATATGCCTTTGGATTTTA
1 AAATGTAAATCAGGTATCATCTAGATGCCATTCTGCCCCTGAACTATATATGCCTTTGGATTTTA
11995693 GATGAATTAATGAGTTAGCCATAGA-TCTAAGTTCTGTTTGACTTAGCTAATATCATCTACTGTT
66 GATGAATTAATGAGTTAGCCATAGATTC-AAGTTCTGTTTGACTTAGCTAATATCATCTACTGTT
11995757 AAATGTAAAT-AGGTATCATCTAGATGCCATTCTGCCCCTGAACTATATATGCCTTTGGATTTTA
1 AAATGTAAATCAGGTATCATCTAGATGCCATTCTGCCCCTGAACTATATATGCCTTTGGATTTTA
11995821 GATGAATTAATGAGTTAGCCATAGATTCAAGTTCTGTTTGACTTAGCTAATATCATCTACTGTT
66 GATGAATTAATGAGTTAGCCATAGATTCAAGTTCTGTTTGACTTAGCTAATATCATCTACTGTT
11995885 GCTTGTTATG
Statistics
Matches: 127, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
128 115 0.91
129 12 0.09
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.37
Consensus pattern (129 bp):
AAATGTAAATCAGGTATCATCTAGATGCCATTCTGCCCCTGAACTATATATGCCTTTGGATTTTA
GATGAATTAATGAGTTAGCCATAGATTCAAGTTCTGTTTGACTTAGCTAATATCATCTACTGTT
Found at i:11999526 original size:43 final size:43
Alignment explanation
Indices: 11999460--11999687 Score: 253
Period size: 43 Copynumber: 5.3 Consensus size: 43
11999450 CCAAAGGTCA
* * * * *
11999460 TTAGTGGCGTTTTTGGCAGAAGCGCCGCTAAAGGTCATGATCT
1 TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGACCT
* * * *
11999503 TTAGTGGCGTTTATGGGAAAAGCGCCGCTAAATGTCATGATCTT
1 TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGA-CCT
*** * *
11999547 TTAGCGGCGTTTGTAATAAAAGCGTCGCTAAAGGTCATGGCCT
1 TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGACCT
* **
11999590 TTAGCGGCGTTTGTGGGAAAAGCGCCGCGAAAGGTCATGGGCT
1 TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGACCT
** *
11999633 TTAGCGGCGTTT-T-TTAAAAGCGCCGCTAAAAGTCATGACCT
1 TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGACCT
11999674 TTAGCGGCGTTTGT
1 TTAGCGGCGTTTGT
11999688 TTCTAAAAAC
Statistics
Matches: 156, Mismatches: 27, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
41 34 0.22
42 2 0.01
43 87 0.56
44 33 0.21
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (43 bp):
TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGACCT
Found at i:11999611 original size:87 final size:84
Alignment explanation
Indices: 11999479--11999687 Score: 292
Period size: 87 Copynumber: 2.5 Consensus size: 84
11999469 TTTTTGGCAG
* * * * * *
11999479 AAGCGCCGCTAAAGGTCATGATCTTTAGTGGCGTTTATGGGAAAAGCGCCGCTAAATGTCATGAT
1 AAGCGCCGCTAAAGGTCATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCGAAAGGTCATGAG
11999544 CTTTTAGCGGCGTTTGTAATAA
66 C-TTTAGCGGCGTTT-T-ATAA
* * *
11999566 AAGCGTCGCTAAAGGTCATGGCCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCGAAAGGTCATGGG
1 AAGCGCCGCTAAAGGTCATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCGAAAGGTCATGAG
*
11999631 CTTTAGCGGCGTTTTTTAA
66 CTTTAGCGGCGTTTTATAA
*
11999650 AAGCGCCGCTAAAAGTCATGACCTTTAGCGGCGTTTGT
1 AAGCGCCGCTAAAGGTCATGACCTTTAGCGGCGTTTGT
11999688 TTCTAAAAAC
Statistics
Matches: 109, Mismatches: 13, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
84 38 0.35
85 1 0.01
86 13 0.12
87 57 0.52
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (84 bp):
AAGCGCCGCTAAAGGTCATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCGAAAGGTCATGAG
CTTTAGCGGCGTTTTATAA
Found at i:11999635 original size:130 final size:120
Alignment explanation
Indices: 11999411--11999687 Score: 308
Period size: 130 Copynumber: 2.2 Consensus size: 120
11999401 TAAATTTTTT
* * * *
11999411 TAAAGTCATG-T-TTTTAGCGGCATTTGTGAAAAAGCGTCGCCAAAGGTCATTAGTGGCGTTTTT
1 TAAAGTCATGATCTTTTAGCGGCGTTTGTAAAAAAGCGTCGCCAAAGGTCATTAGCGGCGTTTGT
* * * *
11999474 GGCAGAAGCGCCGCTAAAGGTCATGATCTTTAGTGGCGTTTATGGGAAAAGCGCCGC
66 GGCAAAAGCGCCGCGAAAGGTCATGAGCTTTAGCGGCGTTT-T-GGAAAAGCGCCGC
*
11999531 TAAATGTCATGATCTTTTAGCGGCGTTTGTAATAAAAGCGTCGCTAAAGGTCATGGCCTTTAGCG
1 TAAA-GTCATGATCTTTTAGCGGCGTTTGTAA-AAAAGCGTCGCCAAAGGTCA------TTAGCG
* * **
11999596 GCGTTTGTGGGAAAAGCGCCGCGAAAGGTCATGGGCTTTAGCGGCGTTTTTTAAAAGCGCCGC
58 GCGTTTGTGGCAAAAGCGCCGCGAAAGGTCATGAGCTTTAGCGGCGTTTTGGAAAAGCGCCGC
*
11999659 TAAAAGTCATGA-CCTTTAGCGGCGTTTGT
1 T-AAAGTCATGATCTTTTAGCGGCGTTTGT
11999688 TTCTAAAAAC
Statistics
Matches: 132, Mismatches: 14, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
120 4 0.03
121 6 0.05
122 1 0.01
123 16 0.12
124 19 0.14
127 16 0.12
128 19 0.14
129 4 0.03
130 47 0.36
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (120 bp):
TAAAGTCATGATCTTTTAGCGGCGTTTGTAAAAAAGCGTCGCCAAAGGTCATTAGCGGCGTTTGT
GGCAAAAGCGCCGCGAAAGGTCATGAGCTTTAGCGGCGTTTTGGAAAAGCGCCGC
Found at i:12007130 original size:31 final size:31
Alignment explanation
Indices: 12007095--12007155 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
12007085 AACAACCTAG
12007095 TGACTTAAATAAAAATTTTCGAATAATTCAA
1 TGACTTAAATAAAAATTTTCGAATAATTCAA
* * *
12007126 TGACTTAAATAAAATTTTTTGAATAGTTCA
1 TGACTTAAATAAAAATTTTCGAATAATTCA
12007156 GTGGCCATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.39
Consensus pattern (31 bp):
TGACTTAAATAAAAATTTTCGAATAATTCAA
Found at i:12012948 original size:20 final size:20
Alignment explanation
Indices: 12012902--12012966 Score: 96
Period size: 20 Copynumber: 3.3 Consensus size: 20
12012892 CACATTAATG
12012902 CCCCTGTTTGTACTTC-GTA
1 CCCCTGTTTGTACTTCGGTA
12012921 CCCCTGTTTGTACTTCGGTA
1 CCCCTGTTTGTACTTCGGTA
* * *
12012941 CTCTTGTTTGTACTTTGGTA
1 CCCCTGTTTGTACTTCGGTA
12012961 CCCCTG
1 CCCCTG
12012967 AATGCACATA
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
19 16 0.40
20 24 0.60
ACGTcount: A:0.09, C:0.29, G:0.18, T:0.43
Consensus pattern (20 bp):
CCCCTGTTTGTACTTCGGTA
Found at i:12013043 original size:80 final size:80
Alignment explanation
Indices: 12012941--12013104 Score: 247
Period size: 80 Copynumber: 2.0 Consensus size: 80
12012931 TACTTCGGTA
* * * *
12012941 CTCTTGTTTGTACTTTGGTACCCCTGAATGCACATACATGCTACTGTTTGTACTTCGGTACCTCT
1 CTCTTGCTTGTACTTCGATACCCCTGAATGCACATACATGCTACTGTTTGTACTTCGGTACCCCT
*
12013006 GAATGCACATACGTG
66 AAATGCACATACGTG
* *
12013021 CTCTTGCTTGTACTTCGATACCCCTGAATGCACATGCATGCTCCTGTTTGTACTTCGGTACCCCT
1 CTCTTGCTTGTACTTCGATACCCCTGAATGCACATACATGCTACTGTTTGTACTTCGGTACCCCT
**
12013086 AAATGCACATTTGTG
66 AAATGCACATACGTG
12013101 CTCT
1 CTCT
12013105 GAATGCACTT
Statistics
Matches: 75, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
80 75 1.00
ACGTcount: A:0.19, C:0.27, G:0.18, T:0.36
Consensus pattern (80 bp):
CTCTTGCTTGTACTTCGATACCCCTGAATGCACATACATGCTACTGTTTGTACTTCGGTACCCCT
AAATGCACATACGTG
Found at i:12013103 original size:40 final size:40
Alignment explanation
Indices: 12012888--12013096 Score: 224
Period size: 40 Copynumber: 5.2 Consensus size: 40
12012878 ATGATATTGA
* *
12012888 AATGCACATTAATGCCCCTGTTTGTACTTC-GTACCCCTG
1 AATGCACATTCATGCTCCTGTTTGTACTTCGGTACCCCTG
** * * * * *
12012927 TTTGTAC-TTCGGTACTCTTGTTTGTACTTTGGTACCCCTG
1 AATGCACATTC-ATGCTCCTGTTTGTACTTCGGTACCCCTG
* * *
12012967 AATGCACATACATGCTACTGTTTGTACTTCGGTACCTCTG
1 AATGCACATTCATGCTCCTGTTTGTACTTCGGTACCCCTG
* * * * *
12013007 AATGCACATACGTGCTCTTGCTTGTACTTCGATACCCCTG
1 AATGCACATTCATGCTCCTGTTTGTACTTCGGTACCCCTG
* *
12013047 AATGCACATGCATGCTCCTGTTTGTACTTCGGTACCCCTA
1 AATGCACATTCATGCTCCTGTTTGTACTTCGGTACCCCTG
12013087 AATGCACATT
1 AATGCACATT
12013097 TGTGCTCTGA
Statistics
Matches: 135, Mismatches: 32, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
38 2 0.01
39 18 0.13
40 113 0.84
41 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.17, T:0.36
Consensus pattern (40 bp):
AATGCACATTCATGCTCCTGTTTGTACTTCGGTACCCCTG
Found at i:12014140 original size:19 final size:18
Alignment explanation
Indices: 12014116--12014161 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 18
12014106 GTGACCCATG
12014116 TTTCTCAAATTTTCATGTT
1 TTTCTCAAATTTTC-TGTT
*
12014135 TTTCTCCAATTTTCTGTT
1 TTTCTCAAATTTTCTGTT
12014153 TTATCTCAA
1 TT-TCTCAA
12014162 TTAGATCCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 6 0.25
19 18 0.75
ACGTcount: A:0.20, C:0.20, G:0.04, T:0.57
Consensus pattern (18 bp):
TTTCTCAAATTTTCTGTT
Found at i:12020524 original size:40 final size:40
Alignment explanation
Indices: 12020480--12020564 Score: 107
Period size: 40 Copynumber: 2.1 Consensus size: 40
12020470 TGCACAAACA
* *
12020480 TGCTCCTGTTTATTCTTCGGTACCCCTGAATACACATGCG
1 TGCTCCTGTTTATACTTCAGTACCCCTGAATACACATGCG
* * * * *
12020520 TGCTCCTGTTTGTACTTCAGTATCCTTGAATGCACATTCG
1 TGCTCCTGTTTATACTTCAGTACCCCTGAATACACATGCG
12020560 TGCTC
1 TGCTC
12020565 TAAATGCACT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.16, C:0.28, G:0.18, T:0.38
Consensus pattern (40 bp):
TGCTCCTGTTTATACTTCAGTACCCCTGAATACACATGCG
Found at i:12033518 original size:19 final size:19
Alignment explanation
Indices: 12033477--12033519 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
12033467 GACCCCTGTT
* *
12033477 TCTCAAATTTTCATGTTTT
1 TCTCAAATTATCATGTTTG
12033496 TCTCAAATTATC-TGTTTAG
1 TCTCAAATTATCATGTTT-G
12033515 TCTCA
1 TCTCA
12033520 GTTGGATCCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.23, C:0.19, G:0.07, T:0.51
Consensus pattern (19 bp):
TCTCAAATTATCATGTTTG
Found at i:12037156 original size:25 final size:25
Alignment explanation
Indices: 12037128--12037176 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
12037118 TTTTCACGCC
12037128 AATTTTACCCCAGTAAAATTTTGAT
1 AATTTTACCCCAGTAAAATTTTGAT
*
12037153 AATTTTACCCCGGTAAAATTTTGA
1 AATTTTACCCCAGTAAAATTTTGA
12037177 AAAAATTCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (25 bp):
AATTTTACCCCAGTAAAATTTTGAT
Found at i:12037356 original size:18 final size:18
Alignment explanation
Indices: 12037321--12037357 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
12037311 TTCAAGAAGA
**
12037321 TCATTTCCATTTTTATTT
1 TCATTTCCATTTCCATTT
12037339 TCATTTCCATTTCCATTT
1 TCATTTCCATTTCCATTT
12037357 T
1 T
12037358 TGGAAACCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.16, C:0.22, G:0.00, T:0.62
Consensus pattern (18 bp):
TCATTTCCATTTCCATTT
Found at i:12041387 original size:14 final size:15
Alignment explanation
Indices: 12041368--12041399 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
12041358 GTGGTTATAG
12041368 TTAAAATA-ATAAAA
1 TTAAAATAGATAAAA
12041382 TTAAAATAGATAAAA
1 TTAAAATAGATAAAA
12041397 TTA
1 TTA
12041400 TGATGTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (15 bp):
TTAAAATAGATAAAA
Found at i:12057848 original size:16 final size:15
Alignment explanation
Indices: 12057823--12057853 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
12057813 TCTTTTTTCC
12057823 CTTTTTTTTTCTTTT
1 CTTTTTTTTTCTTTT
12057838 CTTTATTTTTTCTTTT
1 CTTT-TTTTTTCTTTT
12057854 TTATTCGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.84
Consensus pattern (15 bp):
CTTTTTTTTTCTTTT
Found at i:12061322 original size:15 final size:16
Alignment explanation
Indices: 12061295--12061324 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
12061285 GATAATAATT
12061295 AATATATATTATATAA
1 AATATATATTATATAA
12061311 AATATA-ATTATATA
1 AATATATATTATATA
12061325 TTAGTTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
AATATATATTATATAA
Found at i:12066919 original size:21 final size:21
Alignment explanation
Indices: 12066893--12066933 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
12066883 AGGTGATAAT
12066893 GATCATGTTTGATTTGCCTTC
1 GATCATGTTTGATTTGCCTTC
12066914 GATCATGTTTGATTTGCCTT
1 GATCATGTTTGATTTGCCTT
12066934 TGGTATGTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.15, C:0.17, G:0.20, T:0.49
Consensus pattern (21 bp):
GATCATGTTTGATTTGCCTTC
Found at i:12068436 original size:15 final size:15
Alignment explanation
Indices: 12068413--12068446 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
12068403 AAGGTAGTAC
12068413 AACAGAATAAAGCAA
1 AACAGAATAAAGCAA
* *
12068428 AACATAATAGAGCAA
1 AACAGAATAAAGCAA
12068443 AACA
1 AACA
12068447 AAACCAAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.65, C:0.15, G:0.12, T:0.09
Consensus pattern (15 bp):
AACAGAATAAAGCAA
Found at i:12069546 original size:42 final size:42
Alignment explanation
Indices: 12069424--12069534 Score: 123
Period size: 42 Copynumber: 2.6 Consensus size: 42
12069414 ACAGTGAGTT
* *
12069424 ACATAGCCTGAACACATGCCTATGTCCTTGTCTGTGTGGCTC
1 ACATAGCCTGAACACACGCCTATGTCCTTGTCAGTGTGGCTC
* * * * ** *
12069466 ACACAGCCTGACCACACGCATATGTGCTTACCAATGTGGCTC
1 ACATAGCCTGAACACACGCCTATGTCCTTGTCAGTGTGGCTC
**
12069508 ACATAGCCTGGGCACACGCCTATGTCC
1 ACATAGCCTGAACACACGCCTATGTCC
12069535 CTGGTCGTGT
Statistics
Matches: 55, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24
Consensus pattern (42 bp):
ACATAGCCTGAACACACGCCTATGTCCTTGTCAGTGTGGCTC
Found at i:12085205 original size:169 final size:170
Alignment explanation
Indices: 12084878--12085218 Score: 576
Period size: 169 Copynumber: 2.0 Consensus size: 170
12084868 GGCGTGCAAG
* *
12084878 CTCTTTTTCAAGAGTGGAAATCAAAAAGGGAAGAATATAGTTGAAAGGCAACTAGAAGGGAGAAA
1 CTCTTTTTCAAGAGGGGAAATCAAAAAGGGAAGAATAGAGTTGAAAGGCAACTAGAAGGGAGAAA
*
12084943 GAGAGAAAATGTGAGAGAGAGATGTGTAAAGTGAGGGATGAGAAATAAGGGAGTGAAGGGGGCTT
66 GAGAGAAAATGT-AGAGAGAGATGTGTAAAGTGAAGGATGAGAAATAAGGGAGTGAAGGGGGCTT
12085008 TTTATGGGTGGAGATGGCTGCTAAAAGTAGCAGCCAATCCC
130 TTTATGGGTGGAGATGGCTGCTAAAAGTAGCAGCCAATCCC
* * * *
12085049 CTCTTTTTCAAGAGGGGAAATCGACAAGGGAAGAATGGAGTTGAAAGGCAATTAGAAGGGAGAAA
1 CTCTTTTTCAAGAGGGGAAATCAAAAAGGGAAGAATAGAGTTGAAAGGCAACTAGAAGGGAGAAA
*
12085114 TAGAGAAAATGT-GAGAGAGATGTGTAAAGTGAAGGATGAGAAATAAGGGAGTGAAGGGGGCTTT
66 GAGAGAAAATGTAGAGAGAGATGTGTAAAGTGAAGGATGAGAAATAAGGGAGTGAAGGGGGCTTT
* *
12085178 TTATTGGTGGAGATGGCTTCTAAAAGTAGCAGCCAATCCC
131 TTATGGGTGGAGATGGCTGCTAAAAGTAGCAGCCAATCCC
12085218 C
1 C
12085219 CTTCCTTTGG
Statistics
Matches: 160, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
169 90 0.56
171 70 0.44
ACGTcount: A:0.37, C:0.09, G:0.33, T:0.21
Consensus pattern (170 bp):
CTCTTTTTCAAGAGGGGAAATCAAAAAGGGAAGAATAGAGTTGAAAGGCAACTAGAAGGGAGAAA
GAGAGAAAATGTAGAGAGAGATGTGTAAAGTGAAGGATGAGAAATAAGGGAGTGAAGGGGGCTTT
TTATGGGTGGAGATGGCTGCTAAAAGTAGCAGCCAATCCC
Found at i:12096447 original size:51 final size:51
Alignment explanation
Indices: 12096366--12096466 Score: 157
Period size: 51 Copynumber: 2.0 Consensus size: 51
12096356 GAGCAGACTG
* *
12096366 AAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTA
1 AAGGCAGCGAATCTTATTTCCCTAGCGTTGCAGTGGAACAGATTAAAGCTA
* * *
12096417 AAGGTAGCGAATCTTGTTTCCCTAGCGTTGCAGTGGAATAGATTAAAGCT
1 AAGGCAGCGAATCTTATTTCCCTAGCGTTGCAGTGGAACAGATTAAAGCT
12096467 GAAGTAGAGA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.29
Consensus pattern (51 bp):
AAGGCAGCGAATCTTATTTCCCTAGCGTTGCAGTGGAACAGATTAAAGCTA
Found at i:12096565 original size:123 final size:122
Alignment explanation
Indices: 12096363--12096793 Score: 466
Period size: 123 Copynumber: 3.4 Consensus size: 122
12096353 GTGGAGCAGA
* * * *
12096363 CTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTAAAGGTAGCGAA
1 CTGAAGACAGCGAATCCTATCTCCTTGGCGTTACAGTGGAACAGATTAAAGCTAAAGGTAGCGAA
*
12096428 TCTTGTTTCCCTAGCGTTGCAGTGGAATAGATTAAAGCTGAAGTAGAGAGGATTAAAG
66 TCTTGTTT-CCTAGCATTGCAGTGGAATAGATTAAAGCTGAAGTAGAGAGGATTAAAG
* * * *
12096486 CTAAAGACATCGAATCCTATCTCCTTGGCATTACAGTGGAACAGATTAAAGCTAAAGGTAGCAAA
1 CTGAAGACAGCGAATCCTATCTCCTTGGCGTTACAGTGGAACAGATTAAAGCTAAAGGTAGCGAA
** * * * *
12096551 TCTTGTTTCTCTAGCATTGCAGCAGAGTAGATTAAAGCTGAAGGCAGCGAATCTTATCTCCCTGA
66 TCTTGTTTC-CTAGCATTGCAGTGGAATAGATTAAAGCTGAA-GTA--G-A---GA------GGA
12096616 CGTTAAAG
117 --TTAAAG
* * * * *
12096624 CTGAAGACAGCGAATCTTATTTCCCTGGCTTTACAGTGGAACAGATTAAAGCTAAAGGTAACGAA
1 CTGAAGACAGCGAATCCTATCTCCTTGGCGTTACAGTGGAACAGATTAAAGCTAAAGGTAGCGAA
* * * *
12096689 TCTTGTTTCCTTGGCATTGTAGTGGAATAGATTAAAGCTGAAGTTGAGCGGATTAAAG
66 TCTTGTTTCC-TAGCATTGCAGTGGAATAGATTAAAGCTGAAGTAGAGAGGATTAAAG
* *
12096747 CTGAAGGCAGCGAATCCTATCTCATTGGCGTTACAGTGGAACAGATT
1 CTGAAGACAGCGAATCCTATCTCCTTGGCGTTACAGTGGAACAGATT
12096794 GAAGTCATTA
Statistics
Matches: 252, Mismatches: 39, Indels: 34
0.78 0.12 0.10
Matches are distributed among these distances:
122 1 0.00
123 140 0.56
124 2 0.01
125 2 0.01
126 1 0.00
127 1 0.00
130 1 0.00
134 1 0.00
135 1 0.00
136 2 0.01
137 2 0.01
138 98 0.39
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.27
Consensus pattern (122 bp):
CTGAAGACAGCGAATCCTATCTCCTTGGCGTTACAGTGGAACAGATTAAAGCTAAAGGTAGCGAA
TCTTGTTTCCTAGCATTGCAGTGGAATAGATTAAAGCTGAAGTAGAGAGGATTAAAG
Found at i:12096629 original size:36 final size:36
Alignment explanation
Indices: 12096582--12096650 Score: 120
Period size: 36 Copynumber: 1.9 Consensus size: 36
12096572 GCAGAGTAGA
*
12096582 TTAAAGCTGAAGGCAGCGAATCTTATCTCCCTGACG
1 TTAAAGCTGAAGACAGCGAATCTTATCTCCCTGACG
*
12096618 TTAAAGCTGAAGACAGCGAATCTTATTTCCCTG
1 TTAAAGCTGAAGACAGCGAATCTTATCTCCCTG
12096651 GCTTTACAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (36 bp):
TTAAAGCTGAAGACAGCGAATCTTATCTCCCTGACG
Found at i:12096728 original size:138 final size:138
Alignment explanation
Indices: 12096480--12096731 Score: 371
Period size: 138 Copynumber: 1.8 Consensus size: 138
12096470 GTAGAGAGGA
* *
12096480 TTAAAGCTAAAGACATCGAATCCTATCTCCTTGGCATTACAGTGGAACAGATTAAAGCTAAAGGT
1 TTAAAGCTAAAGACAGCGAATCCTATCTCCCTGGCATTACAGTGGAACAGATTAAAGCTAAAGGT
* *
12096545 AGCAAATCTTGTTTCTCTAGCATTGCAGCAGAGTAGATTAAAGCTGAAGGCAGCGAATCTTATCT
66 AACAAATCTTGTTTCTCTAGCATTGCAGCAGAATAGATTAAAGCTGAAGGCAGCGAATCTTATCT
12096610 CCCTGACG
131 CCCTGACG
* * * *
12096618 TTAAAGCTGAAGACAGCGAATCTTATTTCCCTGGCTTTACAGTGGAACAGATTAAAGCTAAAGGT
1 TTAAAGCTAAAGACAGCGAATCCTATCTCCCTGGCATTACAGTGGAACAGATTAAAGCTAAAGGT
* * * **
12096683 AACGAATCTTGTTTC-CTTGGCATTGTAGTGGAATAGATTAAAGCTGAAG
66 AACAAATCTTGTTTCTC-TAGCATTGCAGCAGAATAGATTAAAGCTGAAG
12096732 TTGAGCGGAT
Statistics
Matches: 100, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
137 1 0.01
138 99 0.99
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (138 bp):
TTAAAGCTAAAGACAGCGAATCCTATCTCCCTGGCATTACAGTGGAACAGATTAAAGCTAAAGGT
AACAAATCTTGTTTCTCTAGCATTGCAGCAGAATAGATTAAAGCTGAAGGCAGCGAATCTTATCT
CCCTGACG
Found at i:12096902 original size:89 final size:88
Alignment explanation
Indices: 12096803--12097234 Score: 407
Period size: 89 Copynumber: 4.8 Consensus size: 88
12096793 TGAAGTCATT
* * * *
12096803 AGTCTTATCTCCCTGTAGTTGCAATGGAGCAGGCTGAACATAGCAAATCTTATATCTCTGAAGTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTGAAGATA-CAAATCTTATCTCTCTGAAGTT
12096868 GCAGTAGAGTAGATTAAAGCTATA
65 GCAGTAGAGTAGATTAAAGCTATA
* * *
12096892 AGTCTTATCTCCCTGAAGTTGCAGTAGAACAGGCTGAAGATAACAAATCTTGTCTCTCTGAAGTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTGAAGAT-ACAAATCTTATCTCTCTGAAGTT
* *
12096957 TCACTAGAGTAGATTAAAGCTATA
65 GCAGTAGAGTAGATTAAAGCTATA
* * * * * *
12096981 AATCTTATCTCCCTAAAGTTGCAGTGGGGCAGGTTGAAGACACAAGTCTTATCTC-CATGAAGTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTGAAGATACAAATCTTATCTCTC-TGAAGTT
* * * * * **
12097045 CCAGTGGAGCAGATTGAAGTTGCA
65 GCAGTAGAGTAGATTAAAGCTATA
* * * *
12097069 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATATCAAATCTTATTTCCCTAAAGTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTGAAGATA-CAAATCTTATCTCTCTGAAGTT
* ** * *
12097134 GCAGTGGAACAAATTGAAGCTATAAATTA
65 GCAGTAGAGTAGATTAAAGC--T--A-TA
* * * * * * *
12097163 CAGATCTCATCTCTCTGAAGTTGCAGTGGAACAGACTGAAGATATCAAATCTAATTTCCCTGAAG
1 -AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTGAAGATA-CAAATCTTATCTCTCTGAAG
12097228 TTGCAGT
63 TTGCAGT
12097235 GGAACAAATT
Statistics
Matches: 286, Mismatches: 46, Indels: 15
0.82 0.13 0.04
Matches are distributed among these distances:
87 1 0.00
88 71 0.25
89 145 0.51
90 2 0.01
91 1 0.00
94 1 0.00
95 2 0.01
96 63 0.22
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.29
Consensus pattern (88 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTGAAGATACAAATCTTATCTCTCTGAAGTTG
CAGTAGAGTAGATTAAAGCTATA
Found at i:12097151 original size:133 final size:132
Alignment explanation
Indices: 12096780--12097155 Score: 371
Period size: 133 Copynumber: 2.8 Consensus size: 132
12096770 ATTGGCGTTA
* * *
12096780 CAGTGGAACAGATTGAAG-TCATTAGTCTTATCTCCCTGTAGTTGCAATGGAGCAGGCTGAACAT
1 CAGTGGAACAGATTGAAGTTCA--AGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGAT
* * * * * * * *
12096844 AGCAAATCTTATATCTCTGAAGTTGCAGTAGAGTAGATTAAAGCTATAAGTCTTATCTCCCTGAA
64 ATCAAATCTTATATCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTACAAGTCTTATCTCCATGAA
*
12096909 GTTG
129 GTTC
* ** * * * * * * * * * * *
12096913 CAGTAGAACAGGCTGAAGATAACAAATCTTGTCTCTCTGAAGTTTCACTAGAGTAGATTAAAGCT
1 CAGTGGAACAGATTGAAG-T-TCAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGAT
* * *
12096978 AT-AAATCTTATCTCCCTAAAGTTGCAGTGGGGCAGGTTGAAGAC-ACAAGTCTTATCTCCATGA
64 ATCAAATCTTATATCCCTAAAGTTGCAGTGGAGCAGATTGAAG-CTACAAGTCTTATCTCCATGA
12097041 AGTTC
128 AGTTC
* *
12097046 CAGTGGAGCAGATTGAAGTTGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATA
1 CAGTGGAACAGATTGAAGTT-CAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGATA
* * *
12097111 TCAAATCTTATTTCCCTAAAGTTGCAGTGGAACAAATTGAAGCTA
65 TCAAATCTTATATCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTA
12097156 TAAATTACAG
Statistics
Matches: 187, Mismatches: 49, Indels: 14
0.75 0.20 0.06
Matches are distributed among these distances:
132 37 0.20
133 118 0.63
134 30 0.16
136 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (132 bp):
CAGTGGAACAGATTGAAGTTCAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGATAT
CAAATCTTATATCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTACAAGTCTTATCTCCATGAAGT
TC
Found at i:12097152 original size:45 final size:45
Alignment explanation
Indices: 12096780--12097362 Score: 362
Period size: 44 Copynumber: 12.9 Consensus size: 45
12096770 ATTGGCGTTA
* * *
12096780 CAGTGGAACAGATTGAAG-TCAT-TAGTCTTATCTCCCTGTAGTTG
1 CAGTGGAACAGATTGAAGAT-ATCAAATCTTATCTCCCTGAAGTTG
* * ** * * * *
12096824 CAATGGAGCAGGCTGAACATAGCAAATCTTATATCTCTGAAGTTG
1 CAGTGGAACAGATTGAAGATATCAAATCTTATCTCCCTGAAGTTG
* ** * * *
12096869 CAGTAGAGTAGATTAAAGCTAT-AAGTCTTATCTCCCTGAAGTTG
1 CAGTGGAACAGATTGAAGATATCAAATCTTATCTCCCTGAAGTTG
* ** * * * *
12096913 CAGTAGAACAGGCTGAAGATAACAAATCTTGTCTCTCTGAAGTTT
1 CAGTGGAACAGATTGAAGATATCAAATCTTATCTCCCTGAAGTTG
* * ** * * *
12096958 CACTAGAGTAGATTAAAGCTAT-AAATCTTATCTCCCTAAAGTTG
1 CAGTGGAACAGATTGAAGATATCAAATCTTATCTCCCTGAAGTTG
** * * * * *
12097002 CAGTGGGGCAGGTTGAAGACA-CAAGTCTTATCTCCATGAAGTTC
1 CAGTGGAACAGATTGAAGATATCAAATCTTATCTCCCTGAAGTTG
* *
12097046 CAGTGGAGCAGATTGAAG-T-TGCAAGTCTTATCTCCCTGAAGTTG
1 CAGTGGAACAGATTGAAGATAT-CAAATCTTATCTCCCTGAAGTTG
* * * *
12097090 CAGTGGAGCAGACTGAAGATATCAAATCTTATTTCCCTAAAGTTG
1 CAGTGGAACAGATTGAAGATATCAAATCTTATCTCCCTGAAGTTG
* * * *
12097135 CAGTGGAACAAATTGAAGCTATAAATTACAGATCTCATCTCTCTGAAGTTG
1 CAGTGGAACAGATTGAAG--AT--A-T-CAAATCTTATCTCCCTGAAGTTG
* * *
12097186 CAGTGGAACAGACTGAAGATATCAAATCTAATTTCCCTGAAGTTG
1 CAGTGGAACAGATTGAAGATATCAAATCTTATCTCCCTGAAGTTG
* * * *
12097231 CAGTGGAACAAATTGAAGCTATAAATTACAGATCTCATCTCTCTGAAGTTG
1 CAGTGGAACAGATTGAAG--AT--A-T-CAAATCTTATCTCCCTGAAGTTG
* * * * * * *
12097282 CAGTAGAGCAGA-T---CATATCAAACCCTATTTCCCTAAAGTTG
1 CAGTGGAACAGATTGAAGATATCAAATCTTATCTCCCTGAAGTTG
* * * *
12097323 CAGTGGAACAGGTTAAAGTTA-CAAGTCTTATCTCCCTGAA
1 CAGTGGAACAGATTGAAGATATCAAATCTTATCTCCCTGAA
12097363 ATTCTAGTCG
Statistics
Matches: 407, Mismatches: 108, Indels: 48
0.72 0.19 0.09
Matches are distributed among these distances:
41 25 0.06
42 2 0.00
43 1 0.00
44 165 0.41
45 138 0.34
46 2 0.00
47 5 0.01
49 4 0.01
50 3 0.01
51 62 0.15
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (45 bp):
CAGTGGAACAGATTGAAGATATCAAATCTTATCTCCCTGAAGTTG
Found at i:12097198 original size:96 final size:96
Alignment explanation
Indices: 12097075--12097332 Score: 416
Period size: 96 Copynumber: 2.7 Consensus size: 96
12097065 TGCAAGTCTT
*
12097075 ATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATATCAAATCTTATTTCCCTAAAGTTGCAGTG
1 ATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGATATCAAATCTTATTTCCCTAAAGTTGCAGTG
12097140 GAACAAATTGAAGCTATAAATTACAGATCTC
66 GAACAAATTGAAGCTATAAATTACAGATCTC
* * *
12097171 ATCTCTCTGAAGTTGCAGTGGAACAGACTGAAGATATCAAATCTAATTTCCCTGAAGTTGCAGTG
1 ATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGATATCAAATCTTATTTCCCTAAAGTTGCAGTG
12097236 GAACAAATTGAAGCTATAAATTACAGATCTC
66 GAACAAATTGAAGCTATAAATTACAGATCTC
* * * *
12097267 ATCTCTCTGAAGTTGCAGTAGAGCAGA-T---CATATCAAACCCTATTTCCCTAAAGTTGCAGTG
1 ATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGATATCAAATCTTATTTCCCTAAAGTTGCAGTG
12097328 GAACA
66 GAACA
12097333 GGTTAAAGTT
Statistics
Matches: 151, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
92 33 0.22
95 1 0.01
96 117 0.77
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (96 bp):
ATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGATATCAAATCTTATTTCCCTAAAGTTGCAGTG
GAACAAATTGAAGCTATAAATTACAGATCTC
Found at i:12098939 original size:3 final size:3
Alignment explanation
Indices: 12098931--12099043 Score: 70
Period size: 3 Copynumber: 38.3 Consensus size: 3
12098921 TCATTTCTAG
* * * * ** *
12098931 TAT TAT TAT TAC TAA TAT TAT TAT CAC CCT T-T TAT TTAT TAA TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT
* * * * * *
12098976 TAT TAT TAG CAT TGT T-T TAT TAT TAA TAT TAT TAG TAT TAT TGT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
12099023 TAT TTT TAT TAT TA- TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT T
12099044 GTTTTTGCTA
Statistics
Matches: 83, Mismatches: 23, Indels: 8
0.73 0.20 0.07
Matches are distributed among these distances:
2 6 0.07
3 74 0.89
4 3 0.04
ACGTcount: A:0.31, C:0.05, G:0.04, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:12098966 original size:29 final size:30
Alignment explanation
Indices: 12098933--12099037 Score: 94
Period size: 29 Copynumber: 3.6 Consensus size: 30
12098923 ATTTCTAGTA
* *
12098933 TTATTATTACTAATATTATTATCACCCTT-
1 TTATTATTATTAATATTATTATCACCATTG
* *
12098962 TTA-T-TTATTAATATTATTATTAGCATTG
1 TTATTATTATTAATATTATTATCACCATTG
**
12098990 TT-TTATTATTAATATTATTAGT-ATTATTG
1 TTATTATTATTAATATTATTA-TCACCATTG
* *
12099019 TTATTATTTTTATTATTAT
1 TTATTATTATTAATATTAT
12099038 ATTATTGTTT
Statistics
Matches: 63, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
27 19 0.30
28 4 0.06
29 25 0.40
30 15 0.24
ACGTcount: A:0.30, C:0.06, G:0.04, T:0.60
Consensus pattern (30 bp):
TTATTATTATTAATATTATTATCACCATTG
Found at i:12099154 original size:88 final size:89
Alignment explanation
Indices: 12099038--12099214 Score: 347
Period size: 88 Copynumber: 2.0 Consensus size: 89
12099028 TTATTATTAT
12099038 ATTATTGTTTTTGCTATATTTTTTGTTTTCATTATTATTCCTATTGTTACTACTATATTTCTTTT
1 ATTATTGTTTTTGCTATATTTTTTGTTTTCATTATTATTCCTATTGTTACTACTATATTTCTTTT
12099103 TATTTACATAATGTTTGCTAAATA
66 TATTTACATAATGTTTGCTAAATA
12099127 ATTATTG-TTTTGCTATATTTTTTGTTTTCATTATTATTCCTATTGTTACTACTATATTTCTTTT
1 ATTATTGTTTTTGCTATATTTTTTGTTTTCATTATTATTCCTATTGTTACTACTATATTTCTTTT
12099191 TATTTACATAATGTTTGCTAAATA
66 TATTTACATAATGTTTGCTAAATA
12099215 TACTTATTTT
Statistics
Matches: 88, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
88 81 0.92
89 7 0.08
ACGTcount: A:0.24, C:0.10, G:0.07, T:0.59
Consensus pattern (89 bp):
ATTATTGTTTTTGCTATATTTTTTGTTTTCATTATTATTCCTATTGTTACTACTATATTTCTTTT
TATTTACATAATGTTTGCTAAATA
Found at i:12103295 original size:42 final size:42
Alignment explanation
Indices: 12103248--12103331 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
12103238 AAACCAAGAG
12103248 ATACAATTATCATTCATCACTCAATAATTATTTTCCAACAAT
1 ATACAATTATCATTCATCACTCAATAATTATTTTCCAACAAT
* *
12103290 ATACAATTGTCATTCTTCACTCAATAATTATTTTCCAACAAT
1 ATACAATTATCATTCATCACTCAATAATTATTTTCCAACAAT
12103332 GGTTCTTCTA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.38, C:0.21, G:0.01, T:0.39
Consensus pattern (42 bp):
ATACAATTATCATTCATCACTCAATAATTATTTTCCAACAAT
Found at i:12105337 original size:9 final size:9
Alignment explanation
Indices: 12105323--12105364 Score: 68
Period size: 9 Copynumber: 4.8 Consensus size: 9
12105313 TTACATAAAC
12105323 TTATAAATA
1 TTATAAATA
12105332 TTATAAATA
1 TTATAAATA
*
12105341 -TATAAGTA
1 TTATAAATA
12105349 TTATAAATA
1 TTATAAATA
12105358 TTATAAA
1 TTATAAA
12105365 AATATCTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 7 0.23
9 23 0.77
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (9 bp):
TTATAAATA
Found at i:12105344 original size:17 final size:18
Alignment explanation
Indices: 12105323--12105364 Score: 68
Period size: 17 Copynumber: 2.4 Consensus size: 18
12105313 TTACATAAAC
12105323 TTATAAATATTATAAATA
1 TTATAAATATTATAAATA
*
12105341 -TATAAGTATTATAAATA
1 TTATAAATATTATAAATA
12105358 TTATAAA
1 TTATAAA
12105365 AATATCTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 16 0.76
18 5 0.24
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (18 bp):
TTATAAATATTATAAATA
Found at i:12105438 original size:21 final size:21
Alignment explanation
Indices: 12105408--12105447 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
12105398 TATTAGAAAA
* *
12105408 ATATTTAAATTTTATAAAAGT
1 ATATTAAAATTCTATAAAAGT
12105429 ATATTAAAATTCTATAAAA
1 ATATTAAAATTCTATAAAA
12105448 ACCATTAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (21 bp):
ATATTAAAATTCTATAAAAGT
Found at i:12105468 original size:31 final size:32
Alignment explanation
Indices: 12105433--12105493 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 32
12105423 AAAAGTATAT
* * *
12105433 TAAAATTCTATAAAAACCATT-AAAATTGATA
1 TAAAATTATAAAAAAACCATAAAAAATTGATA
*
12105464 TAAAATTATAAAAAAATCATAAAAAATTGA
1 TAAAATTATAAAAAAACCATAAAAAATTGA
12105494 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 17 0.68
32 8 0.32
ACGTcount: A:0.61, C:0.07, G:0.03, T:0.30
Consensus pattern (32 bp):
TAAAATTATAAAAAAACCATAAAAAATTGATA
Found at i:12105889 original size:10 final size:10
Alignment explanation
Indices: 12105874--12105926 Score: 54
Period size: 10 Copynumber: 5.3 Consensus size: 10
12105864 TCAGCTCAAG
*
12105874 TTTTTATGAT
1 TTTTTATAAT
12105884 TTTTTATAAT
1 TTTTTATAAT
* *
12105894 TTTATAT-TT
1 TTTTTATAAT
12105903 ATTTTTATAAT
1 -TTTTTATAAT
*
12105914 TTTTTATTAT
1 TTTTTATAAT
12105924 TTT
1 TTT
12105927 AAGAATTCTA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
9 1 0.03
10 33 0.94
11 1 0.03
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.74
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:12105909 original size:20 final size:19
Alignment explanation
Indices: 12105884--12105926 Score: 68
Period size: 20 Copynumber: 2.2 Consensus size: 19
12105874 TTTTTATGAT
12105884 TTTTTATAATTTTATATTTA
1 TTTTTATAATTTTATA-TTA
*
12105904 TTTTTATAATTTTTTATTA
1 TTTTTATAATTTTATATTA
12105923 TTTT
1 TTTT
12105927 AAGAATTCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (19 bp):
TTTTTATAATTTTATATTA
Found at i:12105933 original size:19 final size:20
Alignment explanation
Indices: 12105891--12105933 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
12105881 GATTTTTTAT
* *
12105891 AATTTTATATTTATTTTTAT
1 AATTTTATATTTATTTTAAG
*
12105911 AATTTTTTA-TTATTTTAAG
1 AATTTTATATTTATTTTAAG
12105930 AATT
1 AATT
12105934 CTAATACTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (20 bp):
AATTTTATATTTATTTTAAG
Found at i:12106622 original size:8 final size:8
Alignment explanation
Indices: 12106609--12106847 Score: 478
Period size: 8 Copynumber: 29.9 Consensus size: 8
12106599 AATTTTAAAA
12106609 TATTTTTT
1 TATTTTTT
12106617 TATTTTTT
1 TATTTTTT
12106625 TATTTTTT
1 TATTTTTT
12106633 TATTTTTT
1 TATTTTTT
12106641 TATTTTTT
1 TATTTTTT
12106649 TATTTTTT
1 TATTTTTT
12106657 TATTTTTT
1 TATTTTTT
12106665 TATTTTTT
1 TATTTTTT
12106673 TATTTTTT
1 TATTTTTT
12106681 TATTTTTT
1 TATTTTTT
12106689 TATTTTTT
1 TATTTTTT
12106697 TATTTTTT
1 TATTTTTT
12106705 TATTTTTT
1 TATTTTTT
12106713 TATTTTTT
1 TATTTTTT
12106721 TATTTTTT
1 TATTTTTT
12106729 TATTTTTT
1 TATTTTTT
12106737 TATTTTTT
1 TATTTTTT
12106745 TATTTTTT
1 TATTTTTT
12106753 TATTTTTT
1 TATTTTTT
12106761 TATTTTTT
1 TATTTTTT
12106769 TATTTTTT
1 TATTTTTT
12106777 TATTTTTT
1 TATTTTTT
12106785 TATTTTTT
1 TATTTTTT
12106793 TATTTTTT
1 TATTTTTT
12106801 TATTTTTT
1 TATTTTTT
12106809 TATTTTTT
1 TATTTTTT
12106817 TATTTTTT
1 TATTTTTT
12106825 TATTTTTT
1 TATTTTTT
12106833 TATTTTTT
1 TATTTTTT
12106841 TATTTTT
1 TATTTTT
12106848 AAAATAAATT
Statistics
Matches: 231, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 231 1.00
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (8 bp):
TATTTTTT
Found at i:12106860 original size:1 final size:1
Alignment explanation
Indices: 12106611--12106847 Score: 213
Period size: 1 Copynumber: 237.0 Consensus size: 1
12106601 TTTTAAAATA
* * * * * * * *
12106611 TTTTTTTATTTTTTTATTTTTTTATTTTTTTATTTTTTTATTTTTTTATTTTTTTATTTTTTTAT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * * * *
12106676 TTTTTTATTTTTTTATTTTTTTATTTTTTTATTTTTTTATTTTTTTATTTTTTTATTTTTTTATT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * * * *
12106741 TTTTTATTTTTTTATTTTTTTATTTTTTTATTTTTTTATTTTTTTATTTTTTTATTTTTTTATTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * *
12106806 TTTTATTTTTTTATTTTTTTATTTTTTTATTTTTTTATTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
12106848 AAAATAAATT
Statistics
Matches: 178, Mismatches: 58, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 178 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (1 bp):
T
Found at i:12110383 original size:221 final size:219
Alignment explanation
Indices: 12110099--12110537 Score: 772
Period size: 221 Copynumber: 2.0 Consensus size: 219
12110089 AATGGGTCCG
*
12110099 GGAGTCAGTTACGTACGAAAAAGGGTTAGCCCCCTCGTAACGCCCAAAATTGATACCTAATTGAT
1 GGAGTCAGTTACATACGAAAAAGGGTTAGCCCCCTCGTAACGCCCAAAATTGATACCTAATTGAT
12110164 TATTTAATGTCTTAAGGTCGAATGTAGAAAAAAGATTGAAAAGTGA-TTCCCCTTTTTAAAAATA
66 TATTTAATGTCTTAAGGTCGAATGTAGAAAAAAGATTGAAAAGTGATTTCCCC-TTTTAAAAATA
* *
12110228 TTTATTGACATTTTTATTATTTCGCAAACTAAAAAAATGGTCATTTTGCTTCGATGAGATGAGGA
130 TTTATTGACA--TTTATTATTTCGCAAACTAAAAAAAGGGTCATTTTGCTTCGATGAGATGAGAA
*
12110293 AATCGAAACCCTATAAGTTAGGGTACT
193 AATCGAAACCCCATAAGTTAGGGTACT
* *
12110320 GGAGTCAGTTACATACGAAGAAGGGTTAGCCCCCTCGTAACGCCCAAAATTGGTACCTAATTGAT
1 GGAGTCAGTTACATACGAAAAAGGGTTAGCCCCCTCGTAACGCCCAAAATTGATACCTAATTGAT
12110385 TATTTAATGTCTTAAGGTCGAATGTAGAAAAAAGATTGAAAAGTGATTTCCCCTTTTAAAAATAT
66 TATTTAATGTCTTAAGGTCGAATGTAGAAAAAAGATTGAAAAGTGATTTCCCCTTTTAAAAATAT
*
12110450 TTATTGACATTTATTATTTTGCAAACTAAAAAAAGGGTCATTTTGCTTCGATGAGATGAGAAAAT
131 TTATTGACATTTATTATTTCGCAAACTAAAAAAAGGGTCATTTTGCTTCGATGAGATGAGAAAAT
*
12110515 CGAAACCCCGTAAGTTAGGGTAC
196 CGAAACCCCATAAGTTAGGGTAC
12110538 GATCTTTTGA
Statistics
Matches: 209, Mismatches: 8, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
219 74 0.35
221 129 0.62
222 6 0.03
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (219 bp):
GGAGTCAGTTACATACGAAAAAGGGTTAGCCCCCTCGTAACGCCCAAAATTGATACCTAATTGAT
TATTTAATGTCTTAAGGTCGAATGTAGAAAAAAGATTGAAAAGTGATTTCCCCTTTTAAAAATAT
TTATTGACATTTATTATTTCGCAAACTAAAAAAAGGGTCATTTTGCTTCGATGAGATGAGAAAAT
CGAAACCCCATAAGTTAGGGTACT
Found at i:12111581 original size:3 final size:3
Alignment explanation
Indices: 12111575--12111626 Score: 61
Period size: 3 Copynumber: 17.3 Consensus size: 3
12111565 AAAAAAAACC
* * *
12111575 AAT AAT AAT AGT AAT AAT ACT AAT AAC AAT AAT AAT AAT AAAT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT
12111620 AAT AAT A
1 AAT AAT A
12111627 TTAAACTAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
2 2 0.05
3 36 0.88
4 3 0.07
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:12111615 original size:15 final size:14
Alignment explanation
Indices: 12111575--12111647 Score: 58
Period size: 15 Copynumber: 5.1 Consensus size: 14
12111565 AAAAAAAACC
*
12111575 AATAATAATAGTAAT
1 AATAATAATA-AAAT
*
12111590 AATACTAATAACAAT
1 AATAATAATAA-AAT
*
12111605 AATAATAATAAATAA
1 AATAATAATAAA-AT
* *
12111620 AATAATATTAAACT
1 AATAATAATAAAAT
*
12111634 AA-AAAAATAAAAT
1 AATAATAATAAAAT
12111647 A
1 A
12111648 GCACAAATAA
Statistics
Matches: 46, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
13 9 0.20
14 3 0.07
15 34 0.74
ACGTcount: A:0.67, C:0.04, G:0.01, T:0.27
Consensus pattern (14 bp):
AATAATAATAAAAT
Found at i:12112320 original size:6 final size:6
Alignment explanation
Indices: 12112309--12112393 Score: 125
Period size: 6 Copynumber: 14.2 Consensus size: 6
12112299 AAAAGGGTAT
* *
12112309 AATAAA AATAAA AATAAA AATAAA AATAAT AATAAA AATAAT AATAAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
* * *
12112357 AATAAT AATAAA AATAAT AATAAA AATAAT AATAAA A
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA A
12112394 GATTAAAATG
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 69 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (6 bp):
AATAAA
Found at i:12112326 original size:12 final size:12
Alignment explanation
Indices: 12112309--12112393 Score: 152
Period size: 12 Copynumber: 7.1 Consensus size: 12
12112299 AAAAGGGTAT
*
12112309 AATAAAAATAAA
1 AATAATAATAAA
*
12112321 AATAAAAATAAA
1 AATAATAATAAA
12112333 AATAATAATAAA
1 AATAATAATAAA
12112345 AATAATAATAAA
1 AATAATAATAAA
12112357 AATAATAATAAA
1 AATAATAATAAA
12112369 AATAATAATAAA
1 AATAATAATAAA
12112381 AATAATAATAAA
1 AATAATAATAAA
12112393 A
1 A
12112394 GATTAAAATG
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
12 72 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (12 bp):
AATAATAATAAA
Found at i:12113348 original size:89 final size:90
Alignment explanation
Indices: 12113254--12114404 Score: 952
Period size: 89 Copynumber: 12.9 Consensus size: 90
12113244 CTTCAACCTA
* * * * * * * *
12113254 CTCCACTGCGAACTCAGAGAGGTAAGACTAGTGTT-GTCGATCTGCTTCGTTGCCAGTACAGAAA
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTCTTCGATCTGCTTCGCTGCCAATACAGAAA
* *
12113318 GACAAGATCTGTTGTTTTTAGTCTG
66 GGCAAGATCTGCTGTTTTTAGTCTG
* * *
12113343 TTCCACTGCAAACTCAGGGAGGCAAGACTGGTGTTCTTCGATTTGCTTCGCTGCCAATACA-AGA
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTCTTCGATCTGCTTCGCTGCCAATACAGA-A
* * *
12113407 AGGCAAGATATGCTATTTTCAGTCTG
65 AGGCAAGATCTGCTGTTTTTAGTCTG
** * *
12113433 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTT-TTTAATCTGCTTCGCTGCCAATATAGGAA
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTCTTCGATCTGCTTCGCTGCCAATACAGAAA
12113497 GGCAAGATCTGCTGTTTTTAGTCTG
66 GGCAAGATCTGCTGTTTTTAGTCTG
* * *
12113522 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTCTTCGATCTACTTCGCTACCAATACAGGAA
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTCTTCGATCTGCTTCGCTGCCAATACAGAAA
* * *
12113587 TGCAAGATCTGCTATTTTCAGTCTG
66 GGCAAGATCTGCTGTTTTTAGTCTG
* * * * * *
12113612 CTTCGCTGCAAACTCAGGGAGGCAATGCTGGTGTT-TTCAATCTGCTTCGCTACCAATACAGGAA
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTCTTCGATCTGCTTCGCTGCCAATACAGAAA
*
12113676 GGCAAGATCTGTTGTTTTTAGTCTG
66 GGCAAGATCTGCTGTTTTTAGTCTG
* * *
12113701 CTCTACTGCAAACTCAAGGAGGCAAGGCTGGTGTTCGTCGATCTGCTTCGCTGCCAATACA-AGA
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTCTTCGATCTGCTTCGCTGCCAATACAGA-A
* *
12113765 AGGCAAGATCTGCTATTTTCAGTCTG
65 AGGCAAGATCTGCTGTTTTTAGTCTG
* * * * *
12113791 CTCCGCTGCAAACTCAAGGAGGCAAGGCTAGTGTT-TTCAATCTGCTTCGCTGCCAATACAGGAA
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTCTTCGATCTGCTTCGCTGCCAATACAGAAA
*
12113855 GGCAAGATCTGTTGTTTTTAGTCTG
66 GGCAAGATCTGCTGTTTTTAGTCTG
* * *
12113880 CTCCGCTGCAAACTCAGGGAGGCAAGGCTGGTGTTCGTCGATCTGCTTCGCTCCCAATACA-AGA
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTCTTCGATCTGCTTCGCTGCCAATACAGA-A
** * * ** *
12113944 AGGCAAGATCTAATATTTTCAACCTA
65 AGGCAAGATCTGCTGTTTTTAGTCTG
* ** ** * * * *
12113970 CTCTACTGC-TGCTCAGGGAGATAAGGCTTGCTG-TCTTCAATCTACTTCGCTGCCAATACAGGA
1 CTCCACTGCAAACTCAGGGAGGCAAGGC-TGGTGTTCTTCGATCTGCTTCGCTGCCAATACAGAA
* * * * * * * *
12114033 AGACAAGTTCTGTTATTTTCAATATA
65 AGGCAAGATCTGCTGTTTTTAGTCTG
** * * ** * * *
12114059 CTCCACTGC-TGCCCAGAGAGATAAGGCTGG-GGTCTTCGATCTACTTCGCTGCCAATACAGGAA
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTCTTCGATCTGCTTCGCTGCCAATACAGAAA
* * * * * ** *
12114122 GACAATATCTACTATTTTCAACCTA
66 GGCAAGATCTGCTGTTTTTAGTCTG
* ** ** * *
12114147 CTTCACTGC-TGCTCAGGGAGATAAGGCT--TGCTATCTTCGATCTACTTCGCTGCCAATACAGG
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTG-T-TCTTCGATCTGCTTCGCTGCCAATACAGA
* * * * ** *
12114209 AAGACAAGGTCTGCTATTTTCAACCTA
64 AAGGCAAGATCTGCTGTTTTTAGTCTG
* ** ** * * * * * *
12114236 CTCCACTAC-TGCTCAGGGAGATAAGGCCGG-GGTCTTCAATCTACTTCGCTGTCAATACAGGAA
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTCTTCGATCTGCTTCGCTGCCAATACAGAAA
* * * ** *
12114299 GACAAGGTCTGCTATTTTTAACCTA
66 GGCAAGATCTGCTGTTTTTAGTCTG
* ** ** * * * *
12114324 CTCCACTAC-TGCTCAGGGAGATAAGGCTGG-GGTCTTCGATCTACTTCGCTGCCAATATAGGAA
1 CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTCTTCGATCTGCTTCGCTGCCAATACAGAAA
* *
12114387 GACAAGATCTGCTATTTT
66 GGCAAGATCTGCTGTTTT
12114405 CAACCTACTT
Statistics
Matches: 922, Mismatches: 123, Indels: 35
0.85 0.11 0.03
Matches are distributed among these distances:
87 2 0.00
88 205 0.22
89 429 0.47
90 286 0.31
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.29
Consensus pattern (90 bp):
CTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTCTTCGATCTGCTTCGCTGCCAATACAGAAA
GGCAAGATCTGCTGTTTTTAGTCTG
Found at i:12113555 original size:179 final size:178
Alignment explanation
Indices: 12113245--12114507 Score: 1217
Period size: 179 Copynumber: 7.1 Consensus size: 178
12113235 ATCTATAATC
* * * * * * *
12113245 TTCAACCTACTCCACTGCGAACTCAGAGAGGTAAGACTAGTGTTGTCGATCTGCTTCGTTGCCAG
1 TTCAACCTACTCCACTGC-AACTCAGGGAGGTAAGGCTGGTGTTTTCAATCTGCTTCGCTGCCAA
* * *
12113310 TACAGAAAGACAAGATCTGTTGTTTTTAGTCTGTTCCACTGCAAACTCAGGGAGGCAAGACTGGT
65 TACAGGAAGACAAGATCTGTTGTTTTTAGTCTGCTCCACTGCAAACTCAGGGAGGCAAGGCTGGT
* * *
12113375 GTTCTTCGATTTGCTTCGCTGCCAATACAAGAAGGCAAGATATGCTATT
130 GTTCTTCGATCTACTTCGCTGCCAATACAAGAAGGCAAGATCTGCTATT
** * * *
12113424 TTCAGTCTGCTCCACTGCAAACTCAGGGAGGCAAGGCTGGTGTTTTTAATCTGCTTCGCTGCCAA
1 TTCAACCTACTCCACTGC-AACTCAGGGAGGTAAGGCTGGTGTTTTCAATCTGCTTCGCTGCCAA
* * *
12113489 TATAGGAAGGCAAGATCTGCTGTTTTTAGTCTGCTCCACTGCAAACTCAGGGAGGCAAGGCTGGT
65 TACAGGAAGACAAGATCTGTTGTTTTTAGTCTGCTCCACTGCAAACTCAGGGAGGCAAGGCTGGT
* * *
12113554 GTTCTTCGATCTACTTCGCTACCAATACAGGAATGCAAGATCTGCTATT
130 GTTCTTCGATCTACTTCGCTGCCAATACAAGAAGGCAAGATCTGCTATT
** * * * * * *
12113603 TTCAGTCTGCTTCGCTGCAAACTCAGGGAGGCAATGCTGGTGTTTTCAATCTGCTTCGCTACCAA
1 TTCAACCTACTCCACTGC-AACTCAGGGAGGTAAGGCTGGTGTTTTCAATCTGCTTCGCTGCCAA
* * *
12113668 TACAGGAAGGCAAGATCTGTTGTTTTTAGTCTGCTCTACTGCAAACTCAAGGAGGCAAGGCTGGT
65 TACAGGAAGACAAGATCTGTTGTTTTTAGTCTGCTCCACTGCAAACTCAGGGAGGCAAGGCTGGT
* *
12113733 GTTCGTCGATCTGCTTCGCTGCCAATACAAGAAGGCAAGATCTGCTATT
130 GTTCTTCGATCTACTTCGCTGCCAATACAAGAAGGCAAGATCTGCTATT
** * * * * *
12113782 TTCAGTCTGCTCCGCTGCAAACTCAAGGAGGCAAGGCTAGTGTTTTCAATCTGCTTCGCTGCCAA
1 TTCAACCTACTCCACTGC-AACTCAGGGAGGTAAGGCTGGTGTTTTCAATCTGCTTCGCTGCCAA
* *
12113847 TACAGGAAGGCAAGATCTGTTGTTTTTAGTCTGCTCCGCTGCAAACTCAGGGAGGCAAGGCTGGT
65 TACAGGAAGACAAGATCTGTTGTTTTTAGTCTGCTCCACTGCAAACTCAGGGAGGCAAGGCTGGT
* * * **
12113912 GTTCGTCGATCTGCTTCGCTCCCAATACAAGAAGGCAAGATCTAATATT
130 GTTCTTCGATCTACTTCGCTGCCAATACAAGAAGGCAAGATCTGCTATT
* ** * * * *
12113961 TTCAACCTACTCTACTGCTGCTCAGGGAGATAAGGCTTGCTGTCTTCAATCTACTTCGCTGCCAA
1 TTCAACCTACTCCACTGCAACTCAGGGAGGTAAGGC-TGGTGTTTTCAATCTGCTTCGCTGCCAA
* * * * * * ** * * **
12114026 TACAGGAAGACAAGTTCTGTTATTTTCAATATACTCCACTGC-TGCCCAGAGAGATAAGGCTGG-
65 TACAGGAAGACAAGATCTGTTGTTTTTAGTCTGCTCCACTGCAAACTCAGGGAGGCAAGGCTGGT
* * * * *
12114089 GGTCTTCGATCTACTTCGCTGCCAATACAGGAAGACAATATCTACTATT
130 GTTCTTCGATCTACTTCGCTGCCAATACAAGAAGGCAAGATCTGCTATT
* ** * * * * * *
12114138 TTCAACCTACTTCACTGCTGCTCAGGGAGATAAGGCTTGCTATCTTCGATCTACTTCGCTGCCAA
1 TTCAACCTACTCCACTGCAACTCAGGGAGGTAAGGC-TGGTGTTTTCAATCTGCTTCGCTGCCAA
* * * * ** * * ** ** *
12114203 TACAGGAAGACAAGGTCTGCTATTTTCAACCTACTCCACTAC-TGCTCAGGGAGATAAGGCCGG-
65 TACAGGAAGACAAGATCTGTTGTTTTTAGTCTGCTCCACTGCAAACTCAGGGAGGCAAGGCTGGT
* * * * * *
12114266 GGTCTTCAATCTACTTCGCTGTCAATACAGGAAGACAAGGTCTGCTATT
130 GTTCTTCGATCTACTTCGCTGCCAATACAAGAAGGCAAGATCTGCTATT
* * ** * * * * *
12114315 TTTAACCTACTCCACTACTGCTCAGGGAGATAAGGCTGGGGTCTTCGATCTACTTCGCTGCCAAT
1 TTCAACCTACTCCACTGCAACTCAGGGAGGTAAGGCTGGTGTTTTCAATCTGCTTCGCTGCCAAT
* * * * ** * * ** ** * **
12114380 ATAGGAAGACAAGATCTGCTATTTTCAACCTACTTCGTTGC-TGCTCAAGGAGATAAGGCT--TG
66 ACAGGAAGACAAGATCTGTTGTTTTTAGTCTGCTCCACTGCAAACTCAGGGAGGCAAGGCTGGTG
* * * * *
12114442 CTATCTTCGGTCTACTTTGCTGCCAATATAGGAAGACAAGATCTGCTATT
131 -T-TCTTCGATCTACTTCGCTGCCAATACAAGAAGGCAAGATCTGCTATT
12114492 TTCAACCTACTCCACT
1 TTCAACCTACTCCACT
12114508 ACTGCTCAGA
Statistics
Matches: 955, Mismatches: 125, Indels: 10
0.88 0.11 0.01
Matches are distributed among these distances:
175 1 0.00
176 78 0.08
177 290 0.30
178 28 0.03
179 558 0.58
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (178 bp):
TTCAACCTACTCCACTGCAACTCAGGGAGGTAAGGCTGGTGTTTTCAATCTGCTTCGCTGCCAAT
ACAGGAAGACAAGATCTGTTGTTTTTAGTCTGCTCCACTGCAAACTCAGGGAGGCAAGGCTGGTG
TTCTTCGATCTACTTCGCTGCCAATACAAGAAGGCAAGATCTGCTATT
Found at i:12114054 original size:45 final size:44
Alignment explanation
Indices: 12113388--12114237 Score: 296
Period size: 45 Copynumber: 19.0 Consensus size: 44
12113378 CTTCGATTTG
* * * * *
12113388 CTTCGCTGCCAATACAAGAAGGCAAGATATGCTATTTTCAGTCTG
1 CTTCGCTGCCAATACAGGAAGGCAAG-TCTGCTGTTTTCAATCTA
* * * * * * * *
12113433 CTCCACTGCAAACT-CAGGGAGGCAAGGCTGGTGTTTTTAATCTG
1 CTTCGCTGCCAA-TACAGGAAGGCAAGTCTGCTGTTTTCAATCTA
* * * *
12113477 CTTCGCTGCCAATATAGGAAGGCAAGATCTGCTGTTTTTAGTCTG
1 CTTCGCTGCCAATACAGGAAGGCAAG-TCTGCTGTTTTCAATCTA
* * * * * * *
12113522 CTCCACTGCAAACT-CAGGGAGGCAAGGCTGGTGTTCTTCGATCTA
1 CTTCGCTGCCAA-TACAGGAAGGCAAGTCTGCTGTT-TTCAATCTA
* * * * *
12113567 CTTCGCTACCAATACAGGAATGCAAGATCTGCTATTTTCAGTCTG
1 CTTCGCTGCCAATACAGGAAGGCAAG-TCTGCTGTTTTCAATCTA
* * * *
12113612 CTTCGCTGCAAACT-CAGGGAGGCAA-TGCTGGTGTTTTCAATCTG
1 CTTCGCTGCCAA-TACAGGAAGGCAAGT-CTGCTGTTTTCAATCTA
* * * * *
12113656 CTTCGCTACCAATACAGGAAGGCAAGATCTGTTGTTTTTAGTCTG
1 CTTCGCTGCCAATACAGGAAGGCAAG-TCTGCTGTTTTCAATCTA
* * * * * * *
12113701 C-TCTACTGCAAACT-CAAGG-AGGCAAGGCTGGTGTTCGTCGATCTG
1 CTTC-GCTGCCAA-TAC-AGGAAGGCAAGTCTGCTGTT-TTCAATCTA
* * * *
12113746 CTTCGCTGCCAATACAAGAAGGCAAGATCTGCTATTTTCAGTCTG
1 CTTCGCTGCCAATACAGGAAGGCAAG-TCTGCTGTTTTCAATCTA
* * * *
12113791 CTCCGCTGCAAACT-CAAGG-AGGCAAGGCTAG-TGTTTTCAATCTG
1 CTTCGCTGCCAA-TAC-AGGAAGGCAAGTCT-GCTGTTTTCAATCTA
* * * *
12113835 CTTCGCTGCCAATACAGGAAGGCAAGATCTGTTGTTTTTAGTCTG
1 CTTCGCTGCCAATACAGGAAGGCAAG-TCTGCTGTTTTCAATCTA
* * * * * * * *
12113880 CTCCGCTGCAAACT-CAGGGAGGCAAGGCTGGTGTTCGTCGATCTG
1 CTTCGCTGCCAA-TACAGGAAGGCAAGTCTGCTGTT-TTCAATCTA
* * ** * *
12113925 CTTCGCTCCCAATACAAGAAGGCAAGATCTAATATTTTCAACCTA
1 CTTCGCTGCCAATACAGGAAGGCAAG-TCTGCTGTTTTCAATCTA
* ** * *
12113970 CTCTACTGCTG-C--T-CAGGGAGATAAGGCTTGCTGTCTTCAATCTA
1 CT-T-C-GCTGCCAATACAGGAAGGCAAGTC-TGCTGTTTTCAATCTA
* * * *
12114014 CTTCGCTGCCAATACAGGAAGACAAGTTCTGTTATTTTCAATATA
1 CTTCGCTGCCAATACAGGAAGGCAAG-TCTGCTGTTTTCAATCTA
* * **** ** * ** * *
12114059 CTCCACTG-CTGCCCA-GAGAGATAAGGCTGGGGTCTTCGATCTA
1 CTTCGCTGCCAATACAGGA-AGGCAAGTCTGCTGTTTTCAATCTA
* * * * *
12114102 CTTCGCTGCCAATACAGGAAGACAATATCTACTATTTTCAACCTA
1 CTTCGCTGCCAATACAGGAAGGCAA-GTCTGCTGTTTTCAATCTA
* *** * ** * * * *
12114147 CTTCACTGCTGCT-CAGGGAGATAAGGCTTGCTATCTTCGATCTA
1 CTTCGCTGCCAATACAGGAAGGCAAGTC-TGCTGTTTTCAATCTA
* * *
12114191 CTTCGCTGCCAATACAGGAAGACAAGGTCTGCTATTTTCAACCTA
1 CTTCGCTGCCAATACAGGAAGGCAA-GTCTGCTGTTTTCAATCTA
12114236 CT
1 CT
12114238 CCACTACTGC
Statistics
Matches: 582, Mismatches: 176, Indels: 94
0.68 0.21 0.11
Matches are distributed among these distances:
41 4 0.01
42 2 0.00
43 29 0.05
44 194 0.33
45 313 0.54
46 35 0.06
47 2 0.00
48 3 0.01
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (44 bp):
CTTCGCTGCCAATACAGGAAGGCAAGTCTGCTGTTTTCAATCTA
Done.