Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43060996
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2186021 characters in sequence are not A, C, G, or T
File 45 of 128
Found at i:14148826 original size:4 final size:4
Alignment explanation
Indices: 14148817--14148856 Score: 53
Period size: 4 Copynumber: 10.0 Consensus size: 4
14148807 CTACAAATAT
* * *
14148817 ATAC ATAC ATAC GTAC ATAC ATAC ATAC ATGC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
14148857 CCTTCGTATG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.42, C:0.25, G:0.07, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:14153487 original size:21 final size:21
Alignment explanation
Indices: 14153461--14153502 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
14153451 AGAACATGGT
*
14153461 CGTGTGGGTATTCCACACGCC
1 CGTGTGGCTATTCCACACGCC
*
14153482 CGTGTGGCTATTTCACACGCC
1 CGTGTGGCTATTCCACACGCC
14153503 TTGTAACACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.14, C:0.33, G:0.26, T:0.26
Consensus pattern (21 bp):
CGTGTGGCTATTCCACACGCC
Found at i:14153995 original size:15 final size:15
Alignment explanation
Indices: 14153975--14154008 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
14153965 GAGGTAGTAC
14153975 AACAGAACAAAGCAA
1 AACAGAACAAAGCAA
* *
14153990 AACAGAACAGAGCAG
1 AACAGAACAAAGCAA
14154005 AACA
1 AACA
14154009 ACGCAATTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.62, C:0.21, G:0.18, T:0.00
Consensus pattern (15 bp):
AACAGAACAAAGCAA
Found at i:14165444 original size:29 final size:30
Alignment explanation
Indices: 14165390--14165476 Score: 81
Period size: 31 Copynumber: 2.9 Consensus size: 30
14165380 TTAAATGCTC
*
14165390 AAATCTTTATACAAGTACTCAAATAAAGGTT
1 AAATCTTTATAAAAGTACTCAAAT-AAGGTT
*
14165421 AAATCTTT-TAAAATTA-TCAAATAAGGTTT
1 AAATCTTTATAAAAGTACTCAAATAAGG-TT
* * *
14165450 TAA-CTTTTTGAAAAGTGCTCAAATAAG
1 AAATCTTTAT-AAAAGTACTCAAATAAG
14165477 AATTAAACTT
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
28 8 0.17
29 11 0.23
30 11 0.23
31 17 0.36
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.36
Consensus pattern (30 bp):
AAATCTTTATAAAAGTACTCAAATAAGGTT
Found at i:14166588 original size:37 final size:37
Alignment explanation
Indices: 14166538--14166613 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
14166528 ATCACCTTTT
14166538 TCTCTTTGTCCTCATTTATAGCTAACCTGAGTGTTAG
1 TCTCTTTGTCCTCATTTATAGCTAACCTGAGTGTTAG
14166575 TCTCTTTGTCCTCATTTATAGCTAACCTGAGTGTTAG
1 TCTCTTTGTCCTCATTTATAGCTAACCTGAGTGTTAG
14166612 TC
1 TC
14166614 AAGAATCATC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.18, C:0.22, G:0.16, T:0.43
Consensus pattern (37 bp):
TCTCTTTGTCCTCATTTATAGCTAACCTGAGTGTTAG
Found at i:14167267 original size:1 final size:1
Alignment explanation
Indices: 14167261--14167306 Score: 74
Period size: 1 Copynumber: 46.0 Consensus size: 1
14167251 AGTGAAATAC
* *
14167261 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
14167307 TAAATTCTTC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
1 41 1.00
ACGTcount: A:0.96, C:0.02, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:14170086 original size:131 final size:131
Alignment explanation
Indices: 14169852--14170113 Score: 524
Period size: 131 Copynumber: 2.0 Consensus size: 131
14169842 TTTAAATACA
14169852 AACAGGAAGTATAATTTTCATCCAAGCAATAGAAAGCAATGTTTTTGAAAGCATTAAAGATTTAT
1 AACAGGAAGTATAATTTTCATCCAAGCAATAGAAAGCAATGTTTTTGAAAGCATTAAAGATTTAT
14169917 CCACAAGATTGAACAAGTTCCTACTCTAATCGCAAAAGAAGCAACTGCAACGCAACCATGCCAAG
66 CCACAAGATTGAACAAGTTCCTACTCTAATCGCAAAAGAAGCAACTGCAACGCAACCATGCCAAG
14169982 C
131 C
14169983 AACAGGAAGTATAATTTTCATCCAAGCAATAGAAAGCAATGTTTTTGAAAGCATTAAAGATTTAT
1 AACAGGAAGTATAATTTTCATCCAAGCAATAGAAAGCAATGTTTTTGAAAGCATTAAAGATTTAT
14170048 CCACAAGATTGAACAAGTTCCTACTCTAATCGCAAAAGAAGCAACTGCAACGCAACCATGCCAAG
66 CCACAAGATTGAACAAGTTCCTACTCTAATCGCAAAAGAAGCAACTGCAACGCAACCATGCCAAG
14170113 C
131 C
14170114 TTGACCATTT
Statistics
Matches: 131, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
131 131 1.00
ACGTcount: A:0.41, C:0.21, G:0.15, T:0.23
Consensus pattern (131 bp):
AACAGGAAGTATAATTTTCATCCAAGCAATAGAAAGCAATGTTTTTGAAAGCATTAAAGATTTAT
CCACAAGATTGAACAAGTTCCTACTCTAATCGCAAAAGAAGCAACTGCAACGCAACCATGCCAAG
C
Found at i:14171170 original size:23 final size:24
Alignment explanation
Indices: 14171132--14171178 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
14171122 TATCAATTAT
*
14171132 TATTTTAAATTCAAAATATTTAAA
1 TATTTTAAATTCAAAATAGTTAAA
*
14171156 TATTTT-AATTTAAAATAGTTAAA
1 TATTTTAAATTCAAAATAGTTAAA
14171179 AATTCCTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (24 bp):
TATTTTAAATTCAAAATAGTTAAA
Found at i:14173460 original size:19 final size:18
Alignment explanation
Indices: 14173419--14173457 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
14173409 TCAAGTAAAG
14173419 AAAGACAAAAACGCAAAT
1 AAAGACAAAAACGCAAAT
14173437 AAAGACAAAAACGCAAAT
1 AAAGACAAAAACGCAAAT
14173455 AAA
1 AAA
14173458 AGATGACCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.69, C:0.15, G:0.10, T:0.05
Consensus pattern (18 bp):
AAAGACAAAAACGCAAAT
Found at i:14178453 original size:20 final size:18
Alignment explanation
Indices: 14178354--14178454 Score: 61
Period size: 20 Copynumber: 5.6 Consensus size: 18
14178344 AAGGCTCTTT
14178354 TTAAACTTAATCACTTTAATA
1 TTAAA-TTAAT-A-TTTAATA
14178375 TTAAATTAATA--TAATA
1 TTAAATTAATATTTAATA
* * * * *
14178391 TT-TATCAAGA-TAAACA
1 TTAAATTAATATTTAATA
14178407 TTAAATTAA-ATTTAATA
1 TTAAATTAATATTTAATA
14178424 TTAAGA-TAATCACTTTAATA
1 TTAA-ATTAAT-A-TTTAATA
14178444 TTAAATTAATA
1 TTAAATTAATA
14178455 AAATACTATT
Statistics
Matches: 63, Mismatches: 9, Indels: 18
0.70 0.10 0.20
Matches are distributed among these distances:
15 5 0.08
16 13 0.21
17 15 0.24
18 1 0.02
19 4 0.06
20 20 0.32
21 5 0.08
ACGTcount: A:0.50, C:0.07, G:0.02, T:0.42
Consensus pattern (18 bp):
TTAAATTAATATTTAATA
Found at i:14178494 original size:68 final size:69
Alignment explanation
Indices: 14178361--14178495 Score: 200
Period size: 68 Copynumber: 2.0 Consensus size: 69
14178351 TTTTTAAACT
* *
14178361 TAATCACTTTAATATTAAATTAATATAATATTTATCAAGATAAACATTAAATTAAATTTAATATT
1 TAATCACTTTAATATTAAATTAATAAAATATCTATCAAGATAAACATTAAATTAAATTTAATATT
14178426 AAGA
66 AAGA
* * ** *
14178430 TAATCACTTTAATATTAAATTAATAAAATA-CTATTAGGATAAGTATTAAATTAAATTTCATATT
1 TAATCACTTTAATATTAAATTAATAAAATATCTATCAAGATAAACATTAAATTAAATTTAATATT
14178494 AA
66 AA
14178496 ACTATTAAAA
Statistics
Matches: 59, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
68 30 0.51
69 29 0.49
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.41
Consensus pattern (69 bp):
TAATCACTTTAATATTAAATTAATAAAATATCTATCAAGATAAACATTAAATTAAATTTAATATT
AAGA
Found at i:14185198 original size:24 final size:24
Alignment explanation
Indices: 14185171--14185225 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
14185161 ATATATCACA
*
14185171 ATTATAAC-ATTACATAATATAAAT
1 ATTATAACAATTACATAA-AAAAAT
*
14185195 ATTATAGACAATTATATAAAAAAAT
1 ATTATA-ACAATTACATAAAAAAAT
14185220 A-TATAA
1 ATTATAA
14185226 TGAGATGGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 1 0.04
24 10 0.37
25 8 0.30
26 8 0.30
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (24 bp):
ATTATAACAATTACATAAAAAAAT
Found at i:14185819 original size:97 final size:97
Alignment explanation
Indices: 14185718--14185926 Score: 418
Period size: 97 Copynumber: 2.2 Consensus size: 97
14185708 GTAAGCAAGA
14185718 TAATTAAATTTATTTAATAATAGATTCTAGTATGGTAAAGTGATCATGACTTTAACGAAATTAGA
1 TAATTAAATTTATTTAATAATAGATTCTAGTATGGTAAAGTGATCATGACTTTAACGAAATTAGA
14185783 ATTGGATTGAGAAAATAATTTAATTAAGAAAT
66 ATTGGATTGAGAAAATAATTTAATTAAGAAAT
14185815 TAATTAAATTTATTTAATAATAGATTCTAGTATGGTAAAGTGATCATGACTTTAACGAAATTAGA
1 TAATTAAATTTATTTAATAATAGATTCTAGTATGGTAAAGTGATCATGACTTTAACGAAATTAGA
14185880 ATTGGATTGAGAAAATAATTTAATTAAGAAAT
66 ATTGGATTGAGAAAATAATTTAATTAAGAAAT
14185912 TAATTAAATTTATTT
1 TAATTAAATTTATTT
14185927 TAATTAAATA
Statistics
Matches: 112, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
97 112 1.00
ACGTcount: A:0.44, C:0.04, G:0.13, T:0.39
Consensus pattern (97 bp):
TAATTAAATTTATTTAATAATAGATTCTAGTATGGTAAAGTGATCATGACTTTAACGAAATTAGA
ATTGGATTGAGAAAATAATTTAATTAAGAAAT
Found at i:14186991 original size:3 final size:3
Alignment explanation
Indices: 14186983--14187052 Score: 113
Period size: 3 Copynumber: 23.3 Consensus size: 3
14186973 CTTAGCTTTC
* *
14186983 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AAA AGA AGA AGA ACA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
*
14187031 AGA AGA AGA AGA ATA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA A
14187053 AGCCAATTTC
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 61 1.00
ACGTcount: A:0.69, C:0.01, G:0.29, T:0.01
Consensus pattern (3 bp):
AGA
Found at i:14187774 original size:3 final size:3
Alignment explanation
Indices: 14187766--14187798 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
14187756 TCTCCATTTC
14187766 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
14187799 ACTACTACTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:14187803 original size:3 final size:3
Alignment explanation
Indices: 14187797--14187826 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
14187787 TCTTCTTCTT
14187797 CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA
1 CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA
14187827 TTTTGTTTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
CTA
Found at i:14188439 original size:3 final size:3
Alignment explanation
Indices: 14188427--14188468 Score: 68
Period size: 3 Copynumber: 14.3 Consensus size: 3
14188417 GCATCTCTAT
*
14188427 TTC TTC -TC TTC TTC TTC TTC TTT TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
14188469 ACTACTACTA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 2 0.06
3 34 0.94
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:14188659 original size:30 final size:31
Alignment explanation
Indices: 14188593--14188659 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
14188583 ATGTTAGTGG
14188593 GTGACTAATTTGTTACTTTTCGATAACGTTA
1 GTGACTAATTTGTTACTTTTCGATAACGTTA
* *
14188624 GTGACTAATTTGTTATTTTTTGA-AA-GTTAA
1 GTGACTAATTTGTTACTTTTCGATAACGTT-A
14188654 GTGACT
1 GTGACT
14188660 GAGTTGAAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
29 3 0.09
30 9 0.27
31 21 0.64
ACGTcount: A:0.27, C:0.09, G:0.18, T:0.46
Consensus pattern (31 bp):
GTGACTAATTTGTTACTTTTCGATAACGTTA
Found at i:14189281 original size:31 final size:30
Alignment explanation
Indices: 14189239--14189307 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 30
14189229 ATGTTAGTGG
*
14189239 GTGACTAATTTGTCACTTTTCGATAACGTT-A
1 GTGACTGATTTGTCACTTTTCGA-AA-GTTAA
* * *
14189270 GTGACTGATTTGTTATTTTTTGAAAGTTAA
1 GTGACTGATTTGTCACTTTTCGAAAGTTAA
14189300 GTGACTGA
1 GTGACTGA
14189308 GTTGAAAGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 3 0.09
30 11 0.33
31 19 0.58
ACGTcount: A:0.26, C:0.10, G:0.20, T:0.43
Consensus pattern (30 bp):
GTGACTGATTTGTCACTTTTCGAAAGTTAA
Found at i:14189666 original size:638 final size:641
Alignment explanation
Indices: 14187815--14190165 Score: 3953
Period size: 638 Copynumber: 3.7 Consensus size: 641
14187805 ACTACTACTA
14187815 CTACTACTACTATTTTGTTTGGTTTTTATTTTGGGTTTCCATTGTGGCAAGTTAATTGGCCACGT
1 CTACTACTACTATTTTGTTTGGTTTTTATTTTGGGTTTCCATTGTGGCAAGTTAATTGGCCACGT
14187880 CAGCTAGTTAACTGGCCACGTCACCTGTCCCGTTAGGCCTGTAATGAAAAATGTTAGTGGGTGAC
66 CAGCTAGTTAACTGGCCACGTCACCTGTCCCGTTAGGCCTGTAATGAAAAATGTTAGTGGGTGAC
* *
14187945 TAATTTGTCACTTTTCAATAACGTTAGTGACTGATTTGTTATTTTTTGAAAGTTAAGTGGCTGAG
131 TAATTTGTCACTTTTCGATAACGTTAGTGACTGATTTGTTATTTTTTGAAAGTTAAGTGACTGAG
*
14188010 TTG-AA-A-G-TTGTTTTGTTATTGAGATCAAATTTGAGTGACTGTTGGTGAAATTTACCCATTG
196 TTGAAAGAGGATTGTTTTGTTATTGAGATCAAATTTGAGTGACTGTTGGTGCAATTTACCCATTG
* *
14188071 CTAAAATATAAACCAAAATCTGCCTAAAATACACTACAATAAAAGTATCATTCAAATCCAAATAA
261 CTGAAATATAAACCAAATTCTGCCTAAAATACACTACAATAAAAGTATCATTCAAATCCAAATAA
14188136 AATGCAATTCTAAACAATAATCTAAAGTTCCTATTGCTTCAATTTTTACTGAATGACCATTGCCT
326 AATGCAATTCTAAACAATAATCTAAAGTTCCTATTGCTTCAATTTTTACTGAATGACCATTGCCT
14188201 ATATAGATGTATCTTTCACCATAATTTGGTGAAATCTATAAAATTGATGCTAATTCATAGACGAA
391 ATATAGATGTATCTTTCACCATAATTTGGTGAAATCTATAAAATTGATGCTAATTCATAGACGAA
* **
14188266 ACATCGTTAAGAAAATCTATAAAATCATTAAGGTAATTTACAGATCGATTGGAAGCTCTTCTGCA
456 ACATCGTTAAGAAAATCTATAAAATCATTAAGGAAATTTACAGATCGATTGGAAGCTCTTCTTTA
14188331 CCGGGTTAAGTGATAGGAAGTTGGGAGGGGGTGAATAAACGGTGAGGAAGGAAAAGTTTGGATCT
521 CCGGGTTAAGTGATAGGAAGTTGGGAGGGGGTGAATAAACGGTGAGGAAGGAAAAGTTTGGATCT
* *
14188396 CTGATGGTTTTTCTGGTTTCAGCATCTCTATTTCTTCTCTTCTTCTTCTTCTTTTTCTTCTTCTT
586 CTGATGGTTTTTCTTGTTTCAG-----C-A--TC-TC-CAT-TTCTTCTTC----TCTTCTTCTT
14188461 CTTCTT
636 CTTCTT
* * *
14188467 CTACTACTACTATTTTGTTTTGTTTTTATTTTGGGTTTCCATTGTGGCAAGTTAATTAGCCATGT
1 CTACTACTACTATTTTGTTTGGTTTTTATTTTGGGTTTCCATTGTGGCAAGTTAATTGGCCACGT
* *
14188532 CAGCTAGTTAACTGGCCACGTCACCTGTCTCGCTAGGCCTGTAATGAAAAAATGTTAGTGGGTGA
66 CAGCTAGTTAACTGGCCACGTCACCTGTCCCGTTAGGCCTGTAATG-AAAAATGTTAGTGGGTGA
* *
14188597 CTAATTTGTTACTTTTCGATAACGTTAGTGACTAATTTGTTATTTTTTGAAAGTTAAGTGACTGA
130 CTAATTTGTCACTTTTCGATAACGTTAGTGACTGATTTGTTATTTTTTGAAAGTTAAGTGACTGA
*
14188662 GTTGAAAGTTGAGTGATTGTTTTGTTATTGAGATCAAATTTGAGTGACTGTTGGTGCAATTTAGC
195 GTTGAAA---GAG-GATTGTTTTGTTATTGAGATCAAATTTGAGTGACTGTTGGTGCAATTTACC
*
14188727 CATTGCTGAAATATAAACCAAATTTTGCCTAAAATACACTACAATAAAAGTATCATTCAAATCCA
256 CATTGCTGAAATATAAACCAAATTCTGCCTAAAATACACTACAATAAAAGTATCATTCAAATCCA
14188792 AATAAAATGCAATTCTAAACAATAATCTAAAGTTCCTATTGCTTCAATTTTTACTGAATGACCAT
321 AATAAAATGCAATTCTAAACAATAATCTAAAGTTCCTATTGCTTCAATTTTTACTGAATGACCAT
* *
14188857 TACCTATATAGATGTATCTGTCACCATAATTTGGTGAAATCTATAAAATTGATGCTAATTCATAG
386 TGCCTATATAGATGTATCTTTCACCATAATTTGGTGAAATCTATAAAATTGATGCTAATTCATAG
*
14188922 ATGAAACATCGTTAAGAAAATCTATAAAATCATTAAGGAAATTTACAGATCGATTGGAAGCTCTT
451 ACGAAACATCGTTAAGAAAATCTATAAAATCATTAAGGAAATTTACAGATCGATTGGAAGCTCTT
* *
14188987 CTTTACCAGGTTAAGTGATAGGAAGTTAGGAGGGGGTGAATAAACGGTGAGGAAGGAAAAGTTTG
516 CTTTACCGGGTTAAGTGATAGGAAGTTGGGAGGGGGTGAATAAACGGTGAGGAAGGAAAAGTTTG
*
14189052 GATCTCTAATGGTTTTTCTTGTTTCAGCATCTCCATTTCTTCTTCTCTTCTTCTTCTTCTT
581 GATCTCTGATGGTTTTTCTTGTTTCAGCATCTCCATTTCTTCTTCTCTTCTTCTTCTTCTT
*
14189113 CTACTACTACTATTTTTTTTGGTTTTTATTTTGGGTTTCCATTGTGGCAAGTTAATTGGCCACGT
1 CTACTACTACTATTTTGTTTGGTTTTTATTTTGGGTTTCCATTGTGGCAAGTTAATTGGCCACGT
14189178 CAGCTAGTTAACTGGCCACGTCACCTGTCCCGTTAGGCCTGTAATGAAAAAATGTTAGTGGGTGA
66 CAGCTAGTTAACTGGCCACGTCACCTGTCCCGTTAGGCCTGTAATG-AAAAATGTTAGTGGGTGA
14189243 CTAATTTGTCACTTTTCGATAACGTTAGTGACTGATTTGTTATTTTTTGAAAGTTAAGTGACTGA
130 CTAATTTGTCACTTTTCGATAACGTTAGTGACTGATTTGTTATTTTTTGAAAGTTAAGTGACTGA
* *
14189308 GTTG-AA-A-G-TTGTTTTGTTATTAAGATCAAATTTGAGTGACTGTTGGTGCAATTTACCTATT
195 GTTGAAAGAGGATTGTTTTGTTATTGAGATCAAATTTGAGTGACTGTTGGTGCAATTTACCCATT
* *
14189369 GTTGAAATATAAACCAAATTCTGCCTAAAATAGACTACAATAAAAGTATCATTCAAATCCAAATA
260 GCTGAAATATAAACCAAATTCTGCCTAAAATACACTACAATAAAAGTATCATTCAAATCCAAATA
*
14189434 AAATGCAATTCTAAACAATAATCTAAAGTTCCTATTGCTTCAATTTTTACTGAATAACCATTGCC
325 AAATGCAATTCTAAACAATAATCTAAAGTTCCTATTGCTTCAATTTTTACTGAATGACCATTGCC
14189499 TATATAGATGTATCTTTCACCATAATTTGGTGAAATCTATAAAATTGATGCTAATTCATAGACGA
390 TATATAGATGTATCTTTCACCATAATTTGGTGAAATCTATAAAATTGATGCTAATTCATAGACGA
*
14189564 AACATCGTTAAGAAAATCTATAAAATCATTAAGGAAATTTACAGATTGATTGGAAGCTCTTCTTT
455 AACATCGTTAAGAAAATCTATAAAATCATTAAGGAAATTTACAGATCGATTGGAAGCTCTTCTTT
*
14189629 ACCGGGTTAAGTGATAGGAAGTTGGGAGGGGGTGAATAAACGATGAGGAAGGAAAAGTTTGGATC
520 ACCGGGTTAAGTGATAGGAAGTTGGGAGGGGGTGAATAAACGGTGAGGAAGGAAAAGTTTGGATC
*
14189694 TCTGATGGTTTTTCTTGTTTTAGCATCTCCATTTC-T-TT-TC-T-TT-TTCTTC-T
585 TCTGATGGTTTTTCTTGTTTCAGCATCTCCATTTCTTCTTCTCTTCTTCTTCTTCTT
14189744 -T-CTACTACTATTTTGTTTGGTTTTTATTTTGGGTTTCCATTGTGGCAAGTTAATTGGCCACGT
1 CTACTACTACTATTTTGTTTGGTTTTTATTTTGGGTTTCCATTGTGGCAAGTTAATTGGCCACGT
* * * *
14189807 CAGCTAGTTAACCGGCCACGTCACCTATCTCGTTAGGTCTGTAATGAAAAATGTTAGTGGGTGAC
66 CAGCTAGTTAACTGGCCACGTCACCTGTCCCGTTAGGCCTGTAATGAAAAATGTTAGTGGGTGAC
*
14189872 TAATTTGTTACTTTTCGATAACGTTAGTGACTGATTTGTTATTTTTTGAAAGTTAAGTGACTGAG
131 TAATTTGTCACTTTTCGATAACGTTAGTGACTGATTTGTTATTTTTTGAAAGTTAAGTGACTGAG
14189937 TTGAAAGTTGAGTGATTGTTTTGTTATTGAGATCAAATTTGAGTGACTGTTGGTGCAATTTACCC
196 TTGAAA---GAG-GATTGTTTTGTTATTGAGATCAAATTTGAGTGACTGTTGGTGCAATTTACCC
* * *
14190002 ATTGCTGAAATATAAATCAAATTCTACCTAAAATATACTACAATAAAAGTATCATTCAAATCCAA
257 ATTGCTGAAATATAAACCAAATTCTGCCTAAAATACACTACAATAAAAGTATCATTCAAATCCAA
* *
14190067 ATAAAATGCAATTCTAAACAATAATCTAAAGTTCCTATTGCTTCAATTTCTATTGAATGACCATT
322 ATAAAATGCAATTCTAAACAATAATCTAAAGTTCCTATTGCTTCAATTTTTACTGAATGACCATT
*
14190132 GCCTATATAGATGTATCTTTTACCATAATTTGGT
387 GCCTATATAGATGTATCTTTCACCATAATTTGGT
14190166 CTTTGCAATT
Statistics
Matches: 1617, Mismatches: 65, Indels: 50
0.93 0.04 0.03
Matches are distributed among these distances:
628 86 0.05
629 105 0.06
630 1 0.00
631 1 0.00
632 6 0.00
633 3 0.00
634 1 0.00
635 3 0.00
636 206 0.13
637 1 0.00
638 397 0.25
639 1 0.00
641 1 0.00
645 2 0.00
646 207 0.13
650 9 0.01
651 2 0.00
652 108 0.07
653 85 0.05
654 2 0.00
655 1 0.00
656 1 0.00
658 1 0.00
660 1 0.00
661 386 0.24
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37
Consensus pattern (641 bp):
CTACTACTACTATTTTGTTTGGTTTTTATTTTGGGTTTCCATTGTGGCAAGTTAATTGGCCACGT
CAGCTAGTTAACTGGCCACGTCACCTGTCCCGTTAGGCCTGTAATGAAAAATGTTAGTGGGTGAC
TAATTTGTCACTTTTCGATAACGTTAGTGACTGATTTGTTATTTTTTGAAAGTTAAGTGACTGAG
TTGAAAGAGGATTGTTTTGTTATTGAGATCAAATTTGAGTGACTGTTGGTGCAATTTACCCATTG
CTGAAATATAAACCAAATTCTGCCTAAAATACACTACAATAAAAGTATCATTCAAATCCAAATAA
AATGCAATTCTAAACAATAATCTAAAGTTCCTATTGCTTCAATTTTTACTGAATGACCATTGCCT
ATATAGATGTATCTTTCACCATAATTTGGTGAAATCTATAAAATTGATGCTAATTCATAGACGAA
ACATCGTTAAGAAAATCTATAAAATCATTAAGGAAATTTACAGATCGATTGGAAGCTCTTCTTTA
CCGGGTTAAGTGATAGGAAGTTGGGAGGGGGTGAATAAACGGTGAGGAAGGAAAAGTTTGGATCT
CTGATGGTTTTTCTTGTTTCAGCATCTCCATTTCTTCTTCTCTTCTTCTTCTTCTT
Found at i:14189933 original size:30 final size:31
Alignment explanation
Indices: 14189867--14189935 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
14189857 ATGTTAGTGG
*
14189867 GTGACTAATTTGTTACTTTTCGATAACGTTA
1 GTGACTGATTTGTTACTTTTCGATAACGTTA
* *
14189898 GTGACTGATTTGTTATTTTTTGA-AA-GTTAA
1 GTGACTGATTTGTTACTTTTCGATAACGTT-A
14189928 GTGACTGA
1 GTGACTGA
14189936 GTTGAAAGTT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 3 0.09
30 11 0.32
31 20 0.59
ACGTcount: A:0.26, C:0.09, G:0.20, T:0.45
Consensus pattern (31 bp):
GTGACTGATTTGTTACTTTTCGATAACGTTA
Found at i:14192878 original size:7 final size:7
Alignment explanation
Indices: 14192857--14192915 Score: 52
Period size: 6 Copynumber: 8.4 Consensus size: 7
14192847 AAAAATATTT
14192857 TTTAATA
1 TTTAATA
14192864 TTTAAATA
1 TTT-AATA
14192872 TTTAATA
1 TTTAATA
*
14192879 TTATAATTT
1 TT-TAA-TA
14192888 TTTAA-A
1 TTTAATA
14192894 TTTAA-A
1 TTTAATA
14192900 TTTAA-A
1 TTTAATA
*
14192906 TTTAAAA
1 TTTAATA
14192913 TTT
1 TTT
14192916 TAAATAAACC
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
6 17 0.37
7 13 0.28
8 13 0.28
9 3 0.07
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
TTTAATA
Found at i:14204685 original size:26 final size:26
Alignment explanation
Indices: 14204620--14204673 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
14204610 GAATTTCATA
* *
14204620 TTTTTCTATTGCTTTTGGACTATTTT
1 TTTTTCTGTTGATTTTGGACTATTTT
*
14204646 TTTTTCTGTTGATTTTGGACTGTTTT
1 TTTTTCTGTTGATTTTGGACTATTTT
14204672 TT
1 TT
14204674 CTTTTTTTGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.09, C:0.09, G:0.15, T:0.67
Consensus pattern (26 bp):
TTTTTCTGTTGATTTTGGACTATTTT
Found at i:14207408 original size:95 final size:95
Alignment explanation
Indices: 14207245--14207437 Score: 359
Period size: 95 Copynumber: 2.0 Consensus size: 95
14207235 ATGTCCGTGT
14207245 TTGGCGAATTGTTAGGAGCCCCCTTTACTATTATCAAAAGTGTTCCCTCAAGTTCCCAAGGGTTC
1 TTGGCGAATTGTTAGGAGCCCCCTTTACTATTATCAAAAGTGTTCCCTCAAGTTCCCAAGGGTTC
14207310 TCCCCATGCCTAAAGTAAAGGTCTGACAAA
66 TCCCCATGCCTAAAGTAAAGGTCTGACAAA
* *
14207340 TTGGCGAATTGTTAGGAGCCCCTTTTACTATTATCAGAAGTGTTCCCTCAAGTTCCCAAGGGTTC
1 TTGGCGAATTGTTAGGAGCCCCCTTTACTATTATCAAAAGTGTTCCCTCAAGTTCCCAAGGGTTC
*
14207405 TCCCTATGCCTAAAGTAAAGGTCTGACAAA
66 TCCCCATGCCTAAAGTAAAGGTCTGACAAA
14207435 TTG
1 TTG
14207438 TAAAAATAAA
Statistics
Matches: 95, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
95 95 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (95 bp):
TTGGCGAATTGTTAGGAGCCCCCTTTACTATTATCAAAAGTGTTCCCTCAAGTTCCCAAGGGTTC
TCCCCATGCCTAAAGTAAAGGTCTGACAAA
Found at i:14213192 original size:27 final size:27
Alignment explanation
Indices: 14213162--14213246 Score: 104
Period size: 27 Copynumber: 3.2 Consensus size: 27
14213152 CGGAGAGTCA
14213162 TTAATTAGGAAGCTCATGAAAGAGCCT
1 TTAATTAGGAAGCTCATGAAAGAGCCT
* *
14213189 TTAATTGGGAAGCTCCA-G--AGAGCCA
1 TTAATTAGGAAGCT-CATGAAAGAGCCT
* *
14213214 TTAATCAGGAAGCTCATAAAAGAGCCT
1 TTAATTAGGAAGCTCATGAAAGAGCCT
14213241 TTAATT
1 TTAATT
14213247 GAGAACCTCT
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
24 2 0.04
25 18 0.38
27 25 0.53
28 2 0.04
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.26
Consensus pattern (27 bp):
TTAATTAGGAAGCTCATGAAAGAGCCT
Found at i:14213216 original size:52 final size:52
Alignment explanation
Indices: 14213154--14213284 Score: 174
Period size: 52 Copynumber: 2.5 Consensus size: 52
14213144 AAAAGCTGCG
* * * * *
14213154 GAGAGTCATTAATTAGGAAGCTCATGAAAGAGCCTTTAATTGGGAAGCTCCA
1 GAGAGCCATTAATCAGGAAGCTCATAAAAGAGCCTTTAATTGAGAACCTCCA
**
14213206 GAGAGCCATTAATCAGGAAGCTCATAAAAGAGCCTTTAATTGAGAACCTCTG
1 GAGAGCCATTAATCAGGAAGCTCATAAAAGAGCCTTTAATTGAGAACCTCCA
*
14213258 GAGAGCCA-TATATCAGGACGCTCATAA
1 GAGAGCCATTA-ATCAGGAAGCTCATAA
14213285 GAGCTGTGGT
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
51 2 0.03
52 68 0.97
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.23
Consensus pattern (52 bp):
GAGAGCCATTAATCAGGAAGCTCATAAAAGAGCCTTTAATTGAGAACCTCCA
Found at i:14213217 original size:25 final size:26
Alignment explanation
Indices: 14213154--14213228 Score: 82
Period size: 25 Copynumber: 2.9 Consensus size: 26
14213144 AAAAGCTGCG
*
14213154 GAGAGTCATTAATTAGGAAGCT-CAT
1 GAGAGCCATTAATTAGGAAGCTCCAT
* *
14213179 GAAAGAGCCTTTAATTGGGAAGCTCCA-
1 G--AGAGCCATTAATTAGGAAGCTCCAT
*
14213206 GAGAGCCATTAATCAGGAAGCTC
1 GAGAGCCATTAATTAGGAAGCTC
14213229 ATAAAAGAGC
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
25 20 0.49
27 19 0.46
28 2 0.05
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (26 bp):
GAGAGCCATTAATTAGGAAGCTCCAT
Found at i:14213429 original size:24 final size:24
Alignment explanation
Indices: 14213383--14213429 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
14213373 TATCATGAAG
*
14213383 CTCAAGAGAGCCAATATCAGGATA
1 CTCAAGAGAGCCAATAACAGGATA
* * *
14213407 CTCATGAGAGCTAATAACGGGAT
1 CTCAAGAGAGCCAATAACAGGAT
14213430 GTTCTTATGA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.19
Consensus pattern (24 bp):
CTCAAGAGAGCCAATAACAGGATA
Found at i:14213476 original size:153 final size:153
Alignment explanation
Indices: 14213285--14213631 Score: 640
Period size: 153 Copynumber: 2.3 Consensus size: 153
14213275 ACGCTCATAA
*
14213285 GAGCTGTGGTGTGTCCACAACACATATAGGATTACAACCAATCAGGATACTCAGAAGAGCTATTA
1 GAGCTGTGGTGTGTCCACAACACATACAGGATTACAACCAATCAGGATACTCAGAAGAGCTATTA
*
14213350 ATGGGAAGCTCGTGAGAGCCATTTATCATGAAGCTCAAGAGAGCCAATATCAGGATACTCATGAG
66 ATGGGAAGCTCGTGAGAGCCATTTATCAGGAAGCTCAAGAGAGCCAATATCAGGATACTCATGAG
14213415 AGCTAATAACGGGATGTTCTTAT
131 AGCTAATAACGGGATGTTCTTAT
14213438 GAGCTGTGGTGTGTCCACAACACATACAGGATTACAACCAATCAGGATACTCAGAAGAGCTATTA
1 GAGCTGTGGTGTGTCCACAACACATACAGGATTACAACCAATCAGGATACTCAGAAGAGCTATTA
*
14213503 ATGGGAAGCTCGTGAGAGCCATTTATCAGGAAGCTCAAGAGAGCCAATATCAGGATGCTCATGAG
66 ATGGGAAGCTCGTGAGAGCCATTTATCAGGAAGCTCAAGAGAGCCAATATCAGGATACTCATGAG
14213568 AGCTAATAACGGGATGTTCTTAT
131 AGCTAATAACGGGATGTTCTTAT
* * *
14213591 GAGCTGTGGTGTGTCCGCAACACATGCAGGACTACAACCAA
1 GAGCTGTGGTGTGTCCACAACACATACAGGATTACAACCAA
14213632 ATCGGGGCCC
Statistics
Matches: 188, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
153 188 1.00
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.23
Consensus pattern (153 bp):
GAGCTGTGGTGTGTCCACAACACATACAGGATTACAACCAATCAGGATACTCAGAAGAGCTATTA
ATGGGAAGCTCGTGAGAGCCATTTATCAGGAAGCTCAAGAGAGCCAATATCAGGATACTCATGAG
AGCTAATAACGGGATGTTCTTAT
Found at i:14213535 original size:25 final size:24
Alignment explanation
Indices: 14213506--14213575 Score: 86
Period size: 24 Copynumber: 2.9 Consensus size: 24
14213496 GCTATTAATG
* *
14213506 GGAAGCTCGTGAGAGCCATTTATCA
1 GGAAGCTCATGAGAGCCA-ATATCA
*
14213531 GGAAGCTCAAGAGAGCCAATATCA
1 GGAAGCTCATGAGAGCCAATATCA
* *
14213555 GGATGCTCATGAGAGCTAATA
1 GGAAGCTCATGAGAGCCAATA
14213576 ACGGGATGTT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
24 23 0.59
25 16 0.41
ACGTcount: A:0.34, C:0.19, G:0.27, T:0.20
Consensus pattern (24 bp):
GGAAGCTCATGAGAGCCAATATCA
Found at i:14213582 original size:24 final size:24
Alignment explanation
Indices: 14213529--14213583 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
14213519 AGCCATTTAT
* *
14213529 CAGGAAGCTCAAGAGAGCCAATAT
1 CAGGATGCTCAAGAGAGCCAATAA
* *
14213553 CAGGATGCTCATGAGAGCTAATAA
1 CAGGATGCTCAAGAGAGCCAATAA
*
14213577 CGGGATG
1 CAGGATG
14213584 TTCTTATGAG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.36, C:0.18, G:0.29, T:0.16
Consensus pattern (24 bp):
CAGGATGCTCAAGAGAGCCAATAA
Found at i:14220926 original size:25 final size:25
Alignment explanation
Indices: 14220872--14220943 Score: 83
Period size: 25 Copynumber: 2.9 Consensus size: 25
14220862 TCTCTCTCTC
**
14220872 GAGCCATATAACGGGAAGCTCATTT
1 GAGCCATATAACGGGAAGCTCATAA
* *
14220897 CAGCCATGTAACGGGAAGCTCATAA
1 GAGCCATATAACGGGAAGCTCATAA
* *
14220922 GAGCCATA-ATCGGAAAGCTCAT
1 GAGCCATATAACGGGAAGCTCAT
14220944 GCGAGCCAAT
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
24 12 0.31
25 27 0.69
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (25 bp):
GAGCCATATAACGGGAAGCTCATAA
Found at i:14220963 original size:24 final size:25
Alignment explanation
Indices: 14220911--14220992 Score: 71
Period size: 24 Copynumber: 3.4 Consensus size: 25
14220901 CATGTAACGG
* *
14220911 GAAGCTCATAAGAGCC-ATAATC-G
1 GAAGCTCATGAGAGCCAATAATCAA
*
14220934 GAAAGCTCATGCGAGCCAAT-ATCAA
1 G-AAGCTCATGAGAGCCAATAATCAA
** * *
14220959 GAAGCTCCGGAGAGCCATTAATCAG
1 GAAGCTCATGAGAGCCAATAATCAA
14220984 GAAGCTCAT
1 GAAGCTCAT
14220993 AAAAGATCCT
Statistics
Matches: 45, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
23 1 0.02
24 30 0.67
25 14 0.31
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (25 bp):
GAAGCTCATGAGAGCCAATAATCAA
Found at i:14222297 original size:15 final size:16
Alignment explanation
Indices: 14222247--14222314 Score: 70
Period size: 15 Copynumber: 4.2 Consensus size: 16
14222237 AACGAGCAAG
14222247 ATAAA-AAATAATATAA
1 ATAAACAAATAA-ATAA
*
14222263 ATGAAA-ACATAAATAA
1 AT-AAACAAATAAATAA
14222279 ATAAACAAATAAA-AA
1 ATAAACAAATAAATAA
*
14222294 ATAAACAAAAAATATAA
1 ATAAACAAATAA-ATAA
14222311 ATAA
1 ATAA
14222315 TAAAAGGTAC
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
15 16 0.36
16 15 0.33
17 14 0.31
ACGTcount: A:0.75, C:0.04, G:0.01, T:0.19
Consensus pattern (16 bp):
ATAAACAAATAAATAA
Found at i:14222377 original size:13 final size:15
Alignment explanation
Indices: 14222361--14222394 Score: 54
Period size: 13 Copynumber: 2.4 Consensus size: 15
14222351 AATACACATG
14222361 AATTTAGA-TAT-AA
1 AATTTAGATTATAAA
14222374 AATTTAGATTATAAA
1 AATTTAGATTATAAA
14222389 AATTTA
1 AATTTA
14222395 TATAAACAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 8 0.42
14 3 0.16
15 8 0.42
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (15 bp):
AATTTAGATTATAAA
Found at i:14223938 original size:18 final size:18
Alignment explanation
Indices: 14223915--14223949 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14223905 TTTTGGGCCG
* *
14223915 CGTTTGTAATTGGGCCAC
1 CGTTTGAAATCGGGCCAC
14223933 CGTTTGAAATCGGGCCA
1 CGTTTGAAATCGGGCCA
14223950 TGTATTTTGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.29
Consensus pattern (18 bp):
CGTTTGAAATCGGGCCAC
Found at i:14224521 original size:44 final size:44
Alignment explanation
Indices: 14224472--14225276 Score: 638
Period size: 44 Copynumber: 18.6 Consensus size: 44
14224462 TGCCTCACTG
* * * * *
14224472 CCAATATAAGAAGACAGGATCTGCTATTTTCGATCCACTTCACG
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACA
* * * *
14224516 CCAATACATGAAGACAACATCTGCTTTCTTCGATCTACTTCACCA
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCA-CA
* *
14224561 CCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTC-CTA
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-A
* * **
14224604 CCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTCATG
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACA
* * * *
14224648 CCAATACATGAAGACAAGATCAGCTTTCTTCGATCTACTGGT-A-A
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACT--TCACA
* * * * *
14224692 CCAATATGGGAAGATAAGATCTG--GTCTTTGATCCACTTC-CTA
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-A
*
14224734 CCAATATAGGAAGACAGGATCTGCTA---TC--T-T-C-T----
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACA
* * * * *
14224766 CCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACGTCGCCA
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACA
* *
14224811 CCAATATGGGAAGACAAGA--T-CTAGTCTTCGATCCACTTC-CTA
1 CCAATATAGGAAGACAAGATCTGCTA-TCTTCGATCTACTTCAC-A
* * *
14224853 CCAATATAGGAAGACAGGATTTGCTATCTTCGATCTACTTCACG
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACA
* * * * *
14224897 CCAATACATGAAGACAAGATCTGCTTTCTTTGATCTACTTCGCCA
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACA
* * *
14224942 CCAGTATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTC-CTA
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-A
* ***
14224985 CCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCGTG
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACA
* * * *
14225029 CCAATACATGAAGACAAGATCTACTTTCTTCGATCTACTTCACCA
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCA-CA
* * * * *
14225074 CCAGTATGGGAAGACAATATCTGC-ATCTTCGATCCACTTCGCTA
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-A
* * *
14225118 CCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTCACG
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACA
* * * * * * * *
14225162 CTAGTACATGAAGACAAAATTTGC-ATCTTCGATCCACTTCGCTA
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-A
* * * *
14225206 CCAATATAGGAAGACAGGATCTGTTATCTTTGATCTACTTCACG
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACA
* * *
14225250 CCAATACATGAAGACAAGATCTACTAT
1 CCAATATAGGAAGACAAGATCTGCTAT
14225277 TTTTTAGCAT
Statistics
Matches: 593, Mismatches: 129, Indels: 78
0.74 0.16 0.10
Matches are distributed among these distances:
32 22 0.04
35 2 0.00
36 1 0.00
37 2 0.00
38 1 0.00
39 2 0.00
40 2 0.00
41 2 0.00
42 54 0.09
43 75 0.13
44 317 0.53
45 112 0.19
46 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (44 bp):
CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACA
Found at i:14224779 original size:32 final size:32
Alignment explanation
Indices: 14224734--14224796 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
14224724 CCACTTCCTA
* *
14224734 CCAATATAGGAAGACAGGATCTGCTATCTTCT
1 CCAATACAGGAAGACAAGATCTGCTATCTTCT
* *
14224766 CCAATACATGAAGACAAGATCTGCTTTCTTC
1 CCAATACAGGAAGACAAGATCTGCTATCTTC
14224797 GATCTACGTC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.29
Consensus pattern (32 bp):
CCAATACAGGAAGACAAGATCTGCTATCTTCT
Found at i:14225033 original size:132 final size:132
Alignment explanation
Indices: 14224766--14225246 Score: 707
Period size: 132 Copynumber: 3.6 Consensus size: 132
14224756 GCTATCTTCT
*
14224766 CCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACGTCGCCACCAATATGGGAAGACAAGAT
1 CCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGAT
*
14224831 CT--AGTCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATTTGCTATCTTCGATCTACTTC
66 CTGCA-TCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTC
14224894 ACG
130 ACG
* *
14224897 CCAATACATGAAGACAAGATCTGCTTTCTTTGATCTACTTCGCCACCAGTATGGGAAGACAAGAT
1 CCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGAT
*
14224962 CTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCG
66 CTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCA
*
14225027 TG
131 CG
* * * *
14225029 CCAATACATGAAGACAAGATCTACTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAATAT
1 CCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGAT
*
14225094 CTGCATCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTC
66 CTGCATCTTCGATCCACTTC-CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTC
14225159 ACG
130 ACG
* * * * * * * * *
14225162 CTAGTACATGAAGACAAAATTTGC-ATCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGAT
1 CCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGAT
* * *
14225226 CTGTTATCTTTGATCTACTTC
66 CTG-CATCTTCGATCCACTTC
14225247 ACGCCAATAC
Statistics
Matches: 317, Mismatches: 29, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
131 64 0.20
132 175 0.55
133 78 0.25
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (132 bp):
CCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGAT
CTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCA
CG
Found at i:14239418 original size:25 final size:24
Alignment explanation
Indices: 14239363--14239485 Score: 86
Period size: 25 Copynumber: 5.0 Consensus size: 24
14239353 GCTCTCTCTC
**
14239363 GAGCCATATAACGGGAAGCTCATTT
1 GAGCCAT-TAACGGGAAGCTCATAA
**
14239388 CTGCCATGTAACGGGAAGCTCATAA
1 GAGCCAT-TAACGGGAAGCTCATAA
**
14239413 GAGCCA-TAATCGGGAAGCTCATGC
1 GAGCCATTAA-CGGGAAGCTCATAA
* * * ***
14239437 GAGCCAATATCAGGAAGCTCCGGA
1 GAGCCATTAACGGGAAGCTCATAA
*
14239461 GAGCCATTAATCAGGAAGCTCATAA
1 GAGCCATTAA-CGGGAAGCTCATAA
14239486 AAGAGCCTTT
Statistics
Matches: 76, Mismatches: 19, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
23 3 0.04
24 36 0.47
25 37 0.49
ACGTcount: A:0.33, C:0.23, G:0.25, T:0.19
Consensus pattern (24 bp):
GAGCCATTAACGGGAAGCTCATAA
Found at i:14239431 original size:24 final size:24
Alignment explanation
Indices: 14239401--14239485 Score: 91
Period size: 24 Copynumber: 3.5 Consensus size: 24
14239391 CCATGTAACG
*
14239401 GGAAGCTCATAAGAGCCATAATCG
1 GGAAGCTCATAAGAGCCATAATCA
**
14239425 GGAAGCTCATGCGAGCCA-ATATCA
1 GGAAGCTCATAAGAGCCATA-ATCA
***
14239449 GGAAGCTCCGGAGAGCCATTAATCA
1 GGAAGCTCATAAGAGCCA-TAATCA
14239474 GGAAGCTCATAA
1 GGAAGCTCATAA
14239486 AAGAGCCTTT
Statistics
Matches: 49, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
23 1 0.02
24 34 0.69
25 13 0.27
26 1 0.02
ACGTcount: A:0.35, C:0.22, G:0.26, T:0.16
Consensus pattern (24 bp):
GGAAGCTCATAAGAGCCATAATCA
Found at i:14240757 original size:23 final size:23
Alignment explanation
Indices: 14240732--14240785 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 23
14240722 CAAGCAAGAT
*
14240732 AAAAATAATATAAATAAAAACATAA
1 AAAAATAA-A-AAATAAAAAAATAA
14240757 AAAAATAAAAAATAAAAAAATAA
1 AAAAATAAAAAATAAAAAAATAA
14240780 ACAAAA
1 A-AAAA
14240786 AATATAAAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 14 0.52
24 5 0.19
25 8 0.30
ACGTcount: A:0.81, C:0.04, G:0.00, T:0.15
Consensus pattern (23 bp):
AAAAATAAAAAATAAAAAAATAA
Found at i:14240758 original size:8 final size:8
Alignment explanation
Indices: 14240732--14240785 Score: 65
Period size: 8 Copynumber: 6.6 Consensus size: 8
14240722 CAAGCAAGAT
14240732 AAAAATAA
1 AAAAATAA
*
14240740 TATAAATAA
1 -AAAAATAA
*
14240749 AAACATAA
1 AAAAATAA
14240757 AAAAAT-A
1 AAAAATAA
14240764 AAAAATAA
1 AAAAATAA
14240772 AAAAATAA
1 AAAAATAA
14240780 ACAAAA
1 A-AAAA
14240786 AATATAAAGA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 21 0.54
9 11 0.28
ACGTcount: A:0.81, C:0.04, G:0.00, T:0.15
Consensus pattern (8 bp):
AAAAATAA
Found at i:14240766 original size:15 final size:15
Alignment explanation
Indices: 14240730--14240793 Score: 62
Period size: 15 Copynumber: 4.3 Consensus size: 15
14240720 AACAAGCAAG
*
14240730 ATAAAA-ATAATATAA
1 ATAAAACATAA-AAAA
14240745 ATAAAAACATAAAAAA
1 AT-AAAACATAAAAAA
*
14240761 ATAAAAAATAAAAAA
1 ATAAAACATAAAAAA
*
14240776 AT-AAACA-AAAAAT
1 ATAAAACATAAAAAA
14240789 ATAAA
1 ATAAA
14240794 GAATAAAAGG
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
13 7 0.17
14 6 0.14
15 16 0.38
16 9 0.21
17 4 0.10
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (15 bp):
ATAAAACATAAAAAA
Found at i:14240798 original size:20 final size:19
Alignment explanation
Indices: 14240763--14240800 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
14240753 ATAAAAAAAT
14240763 AAAAAATAAAAAAATAAAC
1 AAAAAATAAAAAAATAAAC
*
14240782 AAAAAATATAAAGAATAAA
1 AAAAAATA-AAAAAATAAA
14240801 AGGTACATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.13
Consensus pattern (19 bp):
AAAAAATAAAAAAATAAAC
Found at i:14242237 original size:18 final size:18
Alignment explanation
Indices: 14242214--14242248 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14242204 TTTTGGGCCG
* *
14242214 CGTTTGTAATTGGGCCAC
1 CGTTTGAAATCGGGCCAC
14242232 CGTTTGAAATCGGGCCA
1 CGTTTGAAATCGGGCCA
14242249 TGTAATTTGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.29
Consensus pattern (18 bp):
CGTTTGAAATCGGGCCAC
Found at i:14248889 original size:24 final size:25
Alignment explanation
Indices: 14248862--14248927 Score: 80
Period size: 25 Copynumber: 2.7 Consensus size: 25
14248852 TCATATGATT
*
14248862 TTACCGATTT-TAGCTCATGAGAGC
1 TTACCGATTTACAGCTCATGAGAGC
* *
14248886 TTACTGATTTACAGCTCGTGAGAGC
1 TTACCGATTTACAGCTCATGAGAGC
* *
14248911 ATACCGATTCACAGCTC
1 TTACCGATTTACAGCTC
14248928 GTATGAGCAT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
24 9 0.26
25 26 0.74
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (25 bp):
TTACCGATTTACAGCTCATGAGAGC
Found at i:14248907 original size:25 final size:25
Alignment explanation
Indices: 14248873--14248939 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
14248863 TACCGATTTT
* * * *
14248873 AGCTCATGAGAGCTTACTGATTTAC
1 AGCTCGTGAGAGCATACCGATTCAC
14248898 AGCTCGTGAGAGCATACCGATTCAC
1 AGCTCGTGAGAGCATACCGATTCAC
14248923 AGCTCGT-ATGAGCATAC
1 AGCTCGTGA-GAGCATAC
14248940 ATGTACAGGA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
24 1 0.03
25 36 0.97
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.25
Consensus pattern (25 bp):
AGCTCGTGAGAGCATACCGATTCAC
Found at i:14253427 original size:20 final size:20
Alignment explanation
Indices: 14253402--14253445 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
14253392 TTCATAGTAT
14253402 TTTATTAACTTAATATTAAA
1 TTTATTAACTTAATATTAAA
* *
14253422 TTTATTATCTTAATATTAGA
1 TTTATTAACTTAATATTAAA
14253442 TTTA
1 TTTA
14253446 ATTTAATATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.55
Consensus pattern (20 bp):
TTTATTAACTTAATATTAAA
Found at i:14263094 original size:74 final size:75
Alignment explanation
Indices: 14262969--14263114 Score: 267
Period size: 74 Copynumber: 2.0 Consensus size: 75
14262959 CTGAGTGTGC
*
14262969 AGTATGAATTAGAATCAGATCGGGGGCAAGAGTTAGCTGTGTTACTGAGGAAGATTAGAATGCTG
1 AGTATGAATTAGAATCAGATCGGGAGCAAGAGTTAGCTGTGTTACTGAGGAAGATTAGAATGCTG
14263034 AGCAATAGGG
66 AGCAATAGGG
*
14263044 AGTATGAATTAGAATCAGATC-GGAGCAAGAGTTAGCTGTGTTACTTAGGAAGATTAGAATGCTG
1 AGTATGAATTAGAATCAGATCGGGAGCAAGAGTTAGCTGTGTTACTGAGGAAGATTAGAATGCTG
14263108 AGCAATA
66 AGCAATA
14263115 AGGCAAAGCT
Statistics
Matches: 69, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
74 48 0.70
75 21 0.30
ACGTcount: A:0.35, C:0.10, G:0.30, T:0.25
Consensus pattern (75 bp):
AGTATGAATTAGAATCAGATCGGGAGCAAGAGTTAGCTGTGTTACTGAGGAAGATTAGAATGCTG
AGCAATAGGG
Found at i:14263405 original size:24 final size:24
Alignment explanation
Indices: 14263378--14263423 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
14263368 AGAATAGTCC
* *
14263378 CAAAAGGAAATGCAGGAGCAGCTT
1 CAAAAGCAAATGAAGGAGCAGCTT
*
14263402 CAAAAGCAAATGAATGAGCAGC
1 CAAAAGCAAATGAAGGAGCAGC
14263424 AAAAAATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.46, C:0.17, G:0.26, T:0.11
Consensus pattern (24 bp):
CAAAAGCAAATGAAGGAGCAGCTT
Found at i:14271524 original size:84 final size:85
Alignment explanation
Indices: 14271414--14271795 Score: 330
Period size: 84 Copynumber: 4.5 Consensus size: 85
14271404 TTAAAGCCGA
* * *
14271414 TAATCCTATCTCCCTGAAGTTTCAGTGGAGTGGATTAAAAACACAGATCTTATCTCTCTGAAGTT
1 TAATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTT
14271479 GCAG-AGAGCAGATTGCATC
66 GCAGCAGAGCAGATTGCATC
* *
14271498 TAATCTTATCTCCCTGAAGTTGCAGTGGAGTGGATT-AAAA-TCAGATCTTATCTCTCTGAAGTT
1 TAATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTT
** * * *
14271561 GCAGTGGAGCAGACTAAGTAAAC
66 GCAGCAGAGCAGA-T-TG-CATC
* ** *** *
14271584 -AAGTCTTATC-CTCCTGAAGTTGCAGT-GAGGCGGACTGACGATGGCAAATCTTATCTAC-CTG
1 TAA-TCTTATCTC-CCTGAAGTTGCAGTGGA-GCGGA-TTAAAAACACAGATCTTATCT-CTCTG
* * * ***
14271645 AAGTTGCCGCGGAGTAGATTAAAGCCGA
61 AAGTTGCAGCAGAGCAGATT---GCATC
* * * *
14271673 TAATCCTATCTCCCAGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATTTCTCTGAAGTT
1 TAATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTT
*
14271738 GCAG-AGAGCAGATCGCATC
66 GCAGCAGAGCAGATTGCATC
* * *
14271757 TAATCTCATCTCCCTGAAGTTGCAGGGGAGCAGATTAAA
1 TAATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAA
14271796 GTTGATAATC
Statistics
Matches: 237, Mismatches: 43, Indels: 36
0.75 0.14 0.11
Matches are distributed among these distances:
82 26 0.11
83 11 0.05
84 71 0.30
85 6 0.03
86 27 0.11
87 9 0.04
88 27 0.11
89 53 0.22
90 7 0.03
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (85 bp):
TAATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTT
GCAGCAGAGCAGATTGCATC
Found at i:14271584 original size:128 final size:127
Alignment explanation
Indices: 14271296--14271918 Score: 628
Period size: 128 Copynumber: 4.8 Consensus size: 127
14271286 ATCGCATCTA
* * * *
14271296 GAAGTTGCAGTGGAGCAGACTAAGTAAGCAAG-TCTTATC-CTCCTGAAGTTGCAGTGAGGCAGA
1 GAAGTTGCAGTGGAGCGGATTAA--AAACAAGATCTTATCTCT-CTGAAGTTGCAGAGA-GCAGA
* * * **
14271359 CTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCCGATAATCCTATC
62 TTG--CAT--CTAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCGATAATCCTATC
14271424 TCCCT
123 TCCCT
* *
14271429 GAAGTTTCAGTGGAGTGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATTG
1 GAAGTTGCAGTGGAGCGGATTAAAAACA-AGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATTG
* ** * * *
14271494 CATCTAATCTTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAATC-A-GATCTTATCTCTCT
65 CATCTAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCGATAATCCTATCTCCCT
* * * *
14271555 GAAGTTGCAGTGGAGCAGACTAAGTAAACAAG-TCTTATC-CTCCTGAAGTTGCAGTGAGGCGGA
1 GAAGTTGCAGTGGAGCGGATTAA--AAACAAGATCTTATCTCT-CTGAAGTTGCAGAGA-GCAGA
* * * * *
14271618 CTGACGATGGCAAATCTTATCTACCTGAAGTTGCCGCGGAGTAGATTAAAGCCGATAATCCTATC
62 TTG-C-AT--CTAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCGATAATCCTATC
*
14271683 TCCCA
123 TCCCT
* * *
14271688 GAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATTTCTCTGAAGTTGCAGAGAGCAGATCG
1 GAAGTTGCAGTGGAGCGGATTAAAAACA-AGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATTG
* * * ** *
14271753 CATCTAATCTCATCTCCCTGAAGTTGCAGGGGAGCAGATTAAAGTTGATAATCCTGTCTCCCT
65 CATCTAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCGATAATCCTATCTCCCT
* * * ** * * *
14271816 GAATTTGCAGTAGAGCGGATTAAAACCTTGGATCTTATCTCTCTAAAGTTGCAGAGAGTAGATCG
1 GAAGTTGCAGTGGAGCGGATTAAAAAC-AAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATTG
*
14271881 CATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGA
65 CATCTAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGA
14271919 CCCCAGAAAT
Statistics
Matches: 408, Mismatches: 65, Indels: 39
0.80 0.13 0.08
Matches are distributed among these distances:
125 2 0.00
126 51 0.12
127 9 0.02
128 183 0.45
129 2 0.00
130 4 0.01
131 45 0.11
132 17 0.04
133 91 0.22
134 4 0.01
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28
Consensus pattern (127 bp):
GAAGTTGCAGTGGAGCGGATTAAAAACAAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATTGC
ATCTAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCGATAATCCTATCTCCCT
Found at i:14271709 original size:44 final size:43
Alignment explanation
Indices: 14271296--14271914 Score: 295
Period size: 44 Copynumber: 14.3 Consensus size: 43
14271286 ATCGCATCTA
* *
14271296 GAAGTTGCAGTGGAGCAGACTAAGTAAG-CA-AGTCTTATC-CTCCT
1 GAAGTTGCAGTGGAGCAGA-TTA--AAGCCATAATCTTATCTC-CCT
* *
14271340 GAAGTTGCAGT-GAGGCAGACTGAAGATGGCA-AATCTTATCTCCCT
1 GAAGTTGCAGTGGA-GCAGA-TTAA-A-GCCATAATCTTATCTCCCT
* *
14271385 GAAGTTGCAGTGGAACAGATTAAAGCCGATAATCCTATCTCCCT
1 GAAGTTGCAGTGGAGCAGATTAAAGCC-ATAATCTTATCTCCCT
* ** ** * *
14271429 GAAGTTTCAGTGGAGTGGATTAAAAACACAGATCTTATCTCTCT
1 GAAGTTGCAGTGGAGCAGATTAAAGCCATA-ATCTTATCTCCCT
* ** *
14271473 GAAGTTGCAG-AGAGCAGATTGCA-TC-TAATCTTATCTCCCT
1 GAAGTTGCAGTGGAGCAGATTAAAGCCATAATCTTATCTCCCT
** ** * *
14271513 GAAGTTGCAGTGGAGTGGATTAAAATCA-GATCTTATCTCTCT
1 GAAGTTGCAGTGGAGCAGATTAAAGCCATAATCTTATCTCCCT
* ** *
14271555 GAAGTTGCAGTGGAGCAGACTAAGTAAACA-AGTCTTATC-CTCCT
1 GAAGTTGCAGTGGAGCAGATTAA--AGCCATAATCTTATCTC-CCT
* * * * *
14271599 GAAGTTGCAGT-GAGGCGGACTGACGATGGCA-AATCTTATCTACCT
1 GAAGTTGCAGTGGA-GCAGA-TTA--AAGCCATAATCTTATCTCCCT
* * * * *
14271644 GAAGTTGCCGCGGAGTAGATTAAAGCCGATAATCCTATCTCCCA
1 GAAGTTGCAGTGGAGCAGATTAAAGCC-ATAATCTTATCTCCCT
* ** * * *
14271688 GAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATTTCTCT
1 GAAGTTGCAGTGGAGCAGATTAAAGCCATA-ATCTTATCTCCCT
* *** * *
14271732 GAAGTTGCAG-AGAGCAGATCGCA-TC-TAATCTCATCTCCCT
1 GAAGTTGCAGTGGAGCAGATTAAAGCCATAATCTTATCTCCCT
* ** * *
14271772 GAAGTTGCAGGGGAGCAGATTAAAGTTGATAATCCTGTCTCCCT
1 GAAGTTGCAGTGGAGCAGATTAAAG-CCATAATCTTATCTCCCT
* * * * * * *
14271816 GAATTTGCAGTAGAGCGGATTAAAACCTTGGATCTTATCTCTCT
1 GAAGTTGCAGTGGAGCAGATTAAAGCCAT-AATCTTATCTCCCT
* * * *** * *
14271860 AAAGTTGCAG-AGAGTAGATCGCA-TC-TAGTCTTATCTCCCT
1 GAAGTTGCAGTGGAGCAGATTAAAGCCATAATCTTATCTCCCT
14271900 GAAGTTGCAGTGGAG
1 GAAGTTGCAGTGGAG
14271915 TAGACCCCAG
Statistics
Matches: 436, Mismatches: 109, Indels: 63
0.72 0.18 0.10
Matches are distributed among these distances:
40 62 0.14
41 23 0.05
42 44 0.10
43 39 0.09
44 208 0.48
45 54 0.12
46 5 0.01
47 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28
Consensus pattern (43 bp):
GAAGTTGCAGTGGAGCAGATTAAAGCCATAATCTTATCTCCCT
Found at i:14271758 original size:259 final size:259
Alignment explanation
Indices: 14271296--14271795 Score: 838
Period size: 259 Copynumber: 1.9 Consensus size: 259
14271286 ATCGCATCTA
*
14271296 GAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACT
1 GAAGTTGCAGTGGAGCAGACTAAGTAAACAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACT
* *
14271361 GAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCCGATAATCCTATCTC
66 GAAGATGGCAAATCTTATCTACCTGAAGTTGCAGCGGAACAGATTAAAGCCGATAATCCTATCTC
* * *
14271426 CCTGAAGTTTCAGTGGAGTGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGA
131 CCAGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGA
* * * **
14271491 TTGCATCTAATCTTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAATCAGATCTTATCTCTCT
196 TCGCATCTAATCTCATCTCCCTGAAGTTGCAGGGGAGCAGATTAAAATCAGATCTTATCTCTCT
*
14271555 GAAGTTGCAGTGGAGCAGACTAAGTAAACAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCGGACT
1 GAAGTTGCAGTGGAGCAGACTAAGTAAACAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACT
* * **
14271620 GACGATGGCAAATCTTATCTACCTGAAGTTGCCGCGGAGTAGATTAAAGCCGATAATCCTATCTC
66 GAAGATGGCAAATCTTATCTACCTGAAGTTGCAGCGGAACAGATTAAAGCCGATAATCCTATCTC
* *
14271685 CCAGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATTTCTCTGAAGTTGCAGAGAGCAGA
131 CCAGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGA
14271750 TCGCATCTAATCTCATCTCCCTGAAGTTGCAGGGGAGCAGATTAAA
196 TCGCATCTAATCTCATCTCCCTGAAGTTGCAGGGGAGCAGATTAAA
14271796 GTTGATAATC
Statistics
Matches: 223, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
259 223 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.27
Consensus pattern (259 bp):
GAAGTTGCAGTGGAGCAGACTAAGTAAACAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACT
GAAGATGGCAAATCTTATCTACCTGAAGTTGCAGCGGAACAGATTAAAGCCGATAATCCTATCTC
CCAGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGA
TCGCATCTAATCTCATCTCCCTGAAGTTGCAGGGGAGCAGATTAAAATCAGATCTTATCTCTCT
Found at i:14273537 original size:22 final size:25
Alignment explanation
Indices: 14273512--14273560 Score: 68
Period size: 22 Copynumber: 2.1 Consensus size: 25
14273502 TTAAAACAAA
*
14273512 TATTTTT-ATA-TGTACTTA-TATT
1 TATTTTTAATATTGTAATTATTATT
14273534 TATTTTTAATATTGTAATTATTATT
1 TATTTTTAATATTGTAATTATTATT
14273559 TA
1 TA
14273561 ATATTTTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 7 0.30
23 3 0.13
24 7 0.30
25 6 0.26
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.63
Consensus pattern (25 bp):
TATTTTTAATATTGTAATTATTATT
Found at i:14275649 original size:26 final size:26
Alignment explanation
Indices: 14275613--14275664 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
14275603 AGACAAAAAA
14275613 TTCAAAGATGAAGTTTAGGGGTTTTT
1 TTCAAAGATGAAGTTTAGGGGTTTTT
14275639 TTCAAAGATGAAGTTTAGGGGTTTTT
1 TTCAAAGATGAAGTTTAGGGGTTTTT
14275665 CTCTCTAATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.04, G:0.27, T:0.42
Consensus pattern (26 bp):
TTCAAAGATGAAGTTTAGGGGTTTTT
Found at i:14281352 original size:12 final size:12
Alignment explanation
Indices: 14281337--14281365 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
14281327 TTACTTACTC
14281337 ACTTACTTGTTT
1 ACTTACTTGTTT
14281349 ACTTACTTGTTT
1 ACTTACTTGTTT
14281361 ACTTA
1 ACTTA
14281366 AATATCTCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.21, C:0.17, G:0.07, T:0.55
Consensus pattern (12 bp):
ACTTACTTGTTT
Found at i:14281689 original size:50 final size:50
Alignment explanation
Indices: 14281614--14281853 Score: 239
Period size: 50 Copynumber: 4.7 Consensus size: 50
14281604 TTTTCTGCAC
* * * **
14281614 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * * ** * *
14281664 TGCCCATGACATGTCCCAGACATGGTCTTACGGGGGAACTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* *
14281714 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-ATCGG
* * *
14281765 -GCCAACGCCATGTCCCGGACATGGTCGTACATGGGACCTCTCATAATCTCAATGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GG
* *
14281820 TGCCAATGCCATGTCCTAGACATGGTCTTACATG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATG
14281854 AGATCTCATT
Statistics
Matches: 156, Mismatches: 27, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
50 122 0.78
51 3 0.02
52 1 0.01
55 1 0.01
56 29 0.19
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:14286780 original size:24 final size:24
Alignment explanation
Indices: 14286748--14286793 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
14286738 ATCTTCTACC
14286748 TCTGTTTCGGCTAGAATACCTGCT
1 TCTGTTTCGGCTAGAATACCTGCT
14286772 TCTGTTTCGGCTAGAATACCTG
1 TCTGTTTCGGCTAGAATACCTG
14286794 GTTGAAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (24 bp):
TCTGTTTCGGCTAGAATACCTGCT
Found at i:14288884 original size:12 final size:12
Alignment explanation
Indices: 14288869--14288897 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
14288859 TTACTTACTC
14288869 ACTTACTTGTTT
1 ACTTACTTGTTT
14288881 ACTTACTTGTTT
1 ACTTACTTGTTT
14288893 ACTTA
1 ACTTA
14288898 AATATCTCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.21, C:0.17, G:0.07, T:0.55
Consensus pattern (12 bp):
ACTTACTTGTTT
Found at i:14289222 original size:50 final size:50
Alignment explanation
Indices: 14289146--14289385 Score: 255
Period size: 50 Copynumber: 4.7 Consensus size: 50
14289136 TTTTCTGTAC
* * * **
14289146 TGCCAATGCCATATCCTAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* ** *
14289196 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * *
14289246 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * * * * *
14289296 TGCCAACGCTATGTCTCGGACATGGTCGTACATGGGACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GG
*
14289352 TGCTAATGCCATGTCCCAGACATGGTCTTACATG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATG
14289386 AGATCTCATT
Statistics
Matches: 157, Mismatches: 27, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
50 127 0.81
53 1 0.01
56 29 0.18
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:14289374 original size:56 final size:50
Alignment explanation
Indices: 14289096--14289385 Score: 235
Period size: 50 Copynumber: 5.7 Consensus size: 50
14289086 CTGATAATAC
* * * * **
14289096 ATGCCAAAGCTATGTCCCAGACATAGTCTTACATGGGA--TGTTTTC-TG
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTG
* * * * ** * *
14289143 TACTGCCAATGCCATATCCTAGATATGGTCTTACATGGGAGTTCTCATATCG
1 -A-TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTG
* * * ** *
14289195 GTGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCG
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTG
*
14289245 GTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTG
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTG
* * * * *
14289295 GTGCCAACGCTATGTCTCGGACATGGTCGTACATGGGACCTCTCATAATCTCAATG
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCT---TG
* *
14289351 ATGCTAATGCCATGTCCCAGACATGGTCTTACATG
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATG
14289386 AGATCTCATT
Statistics
Matches: 195, Mismatches: 37, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
48 1 0.01
49 31 0.16
50 125 0.64
51 3 0.02
52 1 0.01
53 4 0.02
56 30 0.15
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.28
Consensus pattern (50 bp):
ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTG
Found at i:14290945 original size:140 final size:139
Alignment explanation
Indices: 14290693--14291202 Score: 624
Period size: 140 Copynumber: 3.6 Consensus size: 139
14290683 GTTCTAAGAT
* * * * * * *
14290693 GACACTTTTGTGCCAAAACTTTTCTAAGTGTTGGGATAGACTTGTCAACATACACTTTGGTCAAC
1 GACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGTCGACATATACTTTGGCCAAC
* *
14290758 TCTTTATATAAGGGTTGGGATATGTATGCTTAAGGCAATGCTTAAATAAGAGTAAGCTTTGTCCA
66 TCTTTATATAAGGGTTGGGATATGCATGCTTAAGGCAACGCTTAAATAAGAGT-AGCTTTGTCCA
14290823 ACACTATGCC
130 ACACTATGCC
* * * *
14290833 GACACTTTTGGGCCGACACTTTCCTAAGTGTTGGAATGGACTTGTTGACATATACTTTGGGCAAC
1 GACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGTCGACATATACTTTGGCCAAC
* ** * * * *
14290898 TCTTTGTATAAGGGTTGGGATATGCATGCTTAAAACAACACTTAAATAAAAGTCGGCTTTTTCCA
66 TCTTTATATAAGGGTTGGGATATGCATGCTTAAGGCAACGCTTAAATAAGAGT-AGCTTTGTCCA
*
14290963 ACACTATACC
130 ACACTATGCC
* * * * *
14290973 AACACTTTTGGGTCGACACTTTCCTAAGTGTTGGGATAAACTTGTCGACATATGCTTTGACCAAC
1 GACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGTCGACATATACTTTGGCCAAC
* * * * *
14291038 TCTTTATATAAGGGTTGGGATATGTATACTTAAGGCGACGCTTAAATAAGAGTCGATTTTGTCCA
66 TCTTTATATAAGGGTTGGGATATGCATGCTTAAGGCAACGCTTAAATAAGAGTAG-CTTTGTCCA
* * **
14291103 ACATTACGGG
130 ACACTATGCC
* * * * *
14291113 GACCCTTTTGGGCCGACACTTTCCTAAATGTTGGGATAGACTTGTCGACATATGCTTTAGCCGAC
1 GACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGTCGACATATACTTTGGCCAAC
*
14291178 TCTTTGTATAAGGGTTGGGATATGC
66 TCTTTATATAAGGGTTGGGATATGC
14291203 CTTTTCTAAC
Statistics
Matches: 313, Mismatches: 56, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
139 1 0.00
140 312 1.00
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (139 bp):
GACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGTCGACATATACTTTGGCCAAC
TCTTTATATAAGGGTTGGGATATGCATGCTTAAGGCAACGCTTAAATAAGAGTAGCTTTGTCCAA
CACTATGCC
Found at i:14294638 original size:35 final size:34
Alignment explanation
Indices: 14294590--14294823 Score: 177
Period size: 35 Copynumber: 6.5 Consensus size: 34
14294580 TGGATGTGTC
*
14294590 TATCCCAACCTTTTTAAGGTTGTCTTAGACGGGTT
1 TATCCTAACCTTTTTAAGGTTG-CTTAGACGGGTT
* *
14294625 TATCCTAATCTTTTTAAGGTTGCATTAGACAGGTT
1 TATCCTAACCTTTTTAAGGTTGC-TTAGACGGGTT
14294660 TAT-CTCAACCTTTTTTAAGGTTGCCTTAGACGGGTCT
1 TATCCT-AACC-TTTTTAAGGTTG-CTTAGACGGGT-T
* * *
14294697 GT-TCC-AACTTTTTTTAAAGGTTGCCTTAGTCGGGTC
1 -TATCCTAAC-CTTTTT-AAGGTTG-CTTAGACGGGTT
* * * *
14294733 TATCCCAACCTTTTTAGGGTTGCTTTATACGGTTT
1 TATCCTAACCTTTTTAAGGTTGC-TTAGACGGGTT
**
14294768 TATCCTAACCTTTTTTTAAAGGTTGCCTTAGATAAGGTT
1 TATCCTAACC--TTTTT-AAGGTTG-CTTAGA-CGGGTT
* *
14294807 TATCCCAACTTTTTTAA
1 TATCCTAACCTTTTTAA
14294824 AAGGTTGCCT
Statistics
Matches: 160, Mismatches: 22, Indels: 33
0.74 0.10 0.15
Matches are distributed among these distances:
34 4 0.03
35 59 0.37
36 39 0.24
37 34 0.21
38 12 0.08
39 12 0.08
ACGTcount: A:0.21, C:0.19, G:0.17, T:0.43
Consensus pattern (34 bp):
TATCCTAACCTTTTTAAGGTTGCTTAGACGGGTT
Found at i:14294720 original size:37 final size:35
Alignment explanation
Indices: 14294600--14294890 Score: 155
Period size: 37 Copynumber: 7.9 Consensus size: 35
14294590 TATCCCAACC
* * *
14294600 TTTTTAAGGTTGTCTTAGACGGGTT-TATCCTAA-TC
1 TTTTTAAGGTTGCCTTAGACAGGTTAT-TCC-AACTT
* *
14294635 TTTTTAAGGTTGCATTAGACAGGTT-TATCTCAACCT
1 TTTTTAAGGTTGCCTTAGACAGGTTAT-TC-CAACTT
* *
14294671 TTTTTAAGGTTGCCTTAGACGGGTCTGTTCCAACTT
1 TTTTTAAGGTTGCCTTAGACAGGT-TATTCCAACTT
* * * *
14294707 TTTTTAAAGGTTGCCTTAGTCGGGTCTATCCCAAC-C
1 TTTTT-AAGGTTGCCTTAGACAGGT-TATTCCAACTT
* * * *
14294743 TTTTTAGGGTTGCTTTATAC-GGTTTTATCCTAACCTT
1 TTTTTAAGGTTGCCTTAGACAGGTTAT-TCC-AA-CTT
* *
14294780 TTTTTAAAGGTTGCCTTAGATAAGGTTTATCCCAACTT
1 TTTTT-AAGGTTGCCTTAGA-CAGG-TTATTCCAACTT
* **
14294818 TTTTAAAAGGTTGCCTTCA-ATTGGTTTATTCCAACCTT
1 TTTT-TAAGGTTGCCTT-AGACAGG-TTATTCCAA-CTT
* *
14294856 TTTTAAAGGTTGACCTT-GACTAGGTCTTTTCCAAC
1 TTTTTAAGGTTG-CCTTAGAC-AGGT-TATTCCAAC
14294891 CCTTCAATAA
Statistics
Matches: 204, Mismatches: 32, Indels: 38
0.74 0.12 0.14
Matches are distributed among these distances:
33 2 0.01
34 5 0.02
35 41 0.20
36 39 0.19
37 56 0.27
38 51 0.25
39 3 0.01
40 4 0.02
41 3 0.01
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.43
Consensus pattern (35 bp):
TTTTTAAGGTTGCCTTAGACAGGTTATTCCAACTT
Found at i:14294781 original size:73 final size:72
Alignment explanation
Indices: 14294587--14294823 Score: 259
Period size: 73 Copynumber: 3.3 Consensus size: 72
14294577 CTTTGGATGT
* * *
14294587 GTCTATCCCAACCTTTTTAAGGTTG-TCTTAGACGGGTTTATCCTAA-TCTTTTT-AAGGTTGCA
1 GTCTATCCCAACCTTTTTAAGGTTGCT-TTAGACGGTTTTATCCTAACTTTTTTTAAAGGTTGCC
*
14294649 TTAGACAG
65 TTAGTCAG
* * * *
14294657 GTTTATCTCAACCTTTTTTAAGGTTGCCTTAGACGGGTCTGT-TCC-AACTTTTTTTAAAGGTTG
1 GTCTATCCCAACC-TTTTTAAGGTTGCTTTAGAC-GGT-TTTATCCTAACTTTTTTTAAAGGTTG
*
14294720 CCTTAGTCGG
63 CCTTAGTCAG
* *
14294730 GTCTATCCCAACCTTTTTAGGGTTGCTTTATACGGTTTTATCCTAACCTTTTTTTAAAGGTTGCC
1 GTCTATCCCAACCTTTTTAAGGTTGCTTTAGACGGTTTTATCCTAA-CTTTTTTTAAAGGTTGCC
*
14294795 TTAGATAAG
65 TTAG-TCAG
* *
14294804 GTTTATCCCAACTTTTTTAA
1 GTCTATCCCAACCTTTTTAA
14294824 AAGGTTGCCT
Statistics
Matches: 137, Mismatches: 20, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
70 13 0.09
71 26 0.19
72 30 0.22
73 49 0.36
74 19 0.14
ACGTcount: A:0.21, C:0.19, G:0.17, T:0.43
Consensus pattern (72 bp):
GTCTATCCCAACCTTTTTAAGGTTGCTTTAGACGGTTTTATCCTAACTTTTTTTAAAGGTTGCCT
TAGTCAG
Found at i:14299821 original size:9 final size:9
Alignment explanation
Indices: 14299807--14299861 Score: 74
Period size: 9 Copynumber: 5.9 Consensus size: 9
14299797 ATTCACATCC
14299807 TTCTCTCAA
1 TTCTCTCAA
14299816 TTCTCTCAA
1 TTCTCTCAA
14299825 TTCTCTCAAA
1 TTCTCTC-AA
14299835 TTCTCTCAAA
1 TTCTCTC-AA
*
14299845 CTCTCTCAA
1 TTCTCTCAA
*
14299854 GTCTCTCA
1 TTCTCTCA
14299862 TTTTTAATAT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
9 25 0.58
10 18 0.42
ACGTcount: A:0.24, C:0.35, G:0.02, T:0.40
Consensus pattern (9 bp):
TTCTCTCAA
Found at i:14299838 original size:10 final size:10
Alignment explanation
Indices: 14299807--14299853 Score: 71
Period size: 10 Copynumber: 4.9 Consensus size: 10
14299797 ATTCACATCC
14299807 TTCTCTC-AA
1 TTCTCTCAAA
14299816 TTCTCTC-AA
1 TTCTCTCAAA
14299825 TTCTCTCAAA
1 TTCTCTCAAA
14299835 TTCTCTCAAA
1 TTCTCTCAAA
*
14299845 CTCTCTCAA
1 TTCTCTCAA
14299854 GTCTCTCATT
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
9 16 0.44
10 20 0.56
ACGTcount: A:0.26, C:0.34, G:0.00, T:0.40
Consensus pattern (10 bp):
TTCTCTCAAA
Found at i:14299838 original size:19 final size:19
Alignment explanation
Indices: 14299807--14299861 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
14299797 ATTCACATCC
14299807 TTCTCTCAATTCTCTC-AA
1 TTCTCTCAATTCTCTCAAA
14299825 TTCTCTCAAATTCTCTCAAA
1 TTCTCTC-AATTCTCTCAAA
* *
14299845 CTCTCTCAAGTCTCTCA
1 TTCTCTCAATTCTCTCA
14299862 TTTTTAATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
18 7 0.21
19 18 0.55
20 8 0.24
ACGTcount: A:0.24, C:0.35, G:0.02, T:0.40
Consensus pattern (19 bp):
TTCTCTCAATTCTCTCAAA
Found at i:14301025 original size:51 final size:51
Alignment explanation
Indices: 14300949--14301052 Score: 208
Period size: 51 Copynumber: 2.0 Consensus size: 51
14300939 CTAGAATATG
14300949 TTAGGCTATTATTAGATCAAAGCTCGGAAGCTGAGGTTAGTTACCTATTTT
1 TTAGGCTATTATTAGATCAAAGCTCGGAAGCTGAGGTTAGTTACCTATTTT
14301000 TTAGGCTATTATTAGATCAAAGCTCGGAAGCTGAGGTTAGTTACCTATTTT
1 TTAGGCTATTATTAGATCAAAGCTCGGAAGCTGAGGTTAGTTACCTATTTT
14301051 TT
1 TT
14301053 CAAACCTATA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.38
Consensus pattern (51 bp):
TTAGGCTATTATTAGATCAAAGCTCGGAAGCTGAGGTTAGTTACCTATTTT
Found at i:14305543 original size:232 final size:232
Alignment explanation
Indices: 14305137--14305599 Score: 793
Period size: 232 Copynumber: 2.0 Consensus size: 232
14305127 GAACTCCTGA
* * *
14305137 CCGCATAACGACCGTTACCTGGCCTCCCGGTTATACTTGAACTTGTGACTACATCACTGCCGTTG
1 CCGCATAACGACCGTCACCTGGCCTCCCGGTAATACTTGAACTTGTGACTACATCACTGCCGTCG
* * *
14305202 AGTGGGACCTTCACGTTGAATTCAACCCCTGATTGTATCAAACATTATTACCCTGAAACCGGATT
66 AATGAGACCTTCACGTTGAATTCAACCCCTGATTGTATCAAACATTATTACCCTGAAACCAGATT
14305267 TCCTCACGATGGGTTTCTAAGGTCATGGGTTTCCCTTCAAAACTACCTAAGAATTTCTGTCGTTT
131 TCCTCACGATGGGTTTCTAAGGTCATGGGTTTCCCTTCAAAACTACCTAAGAATTTCTGTCGTTT
* * * *
14305332 CAGTTGAAAACCTTGATCACTTTCAAAATACCCTAAG
196 CAGTCGAAAACCCTAAACACTTTCAAAATACCCTAAG
* *
14305369 CCGCATAACGACCGTCACCTGGCCTCCCGGTAATACTTGAACTTGTGACTGCATCA-TAGTCGTC
1 CCGCATAACGACCGTCACCTGGCCTCCCGGTAATACTTGAACTTGTGACTACATCACT-GCCGTC
*
14305433 GAATGAGACCTTCACGTTGAATTCAACCCCTGATTGTATCAAACATTATTACCGTGAAACCAGAT
65 GAATGAGACCTTCACGTTGAATTCAACCCCTGATTGTATCAAACATTATTACCCTGAAACCAGAT
14305498 TTCCTCACGATGGGTTTCTAAGGTCATGGGTTTCCCTTCAAAACTACCTAAGAATTTCTGTCGTT
130 TTCCTCACGATGGGTTTCTAAGGTCATGGGTTTCCCTTCAAAACTACCTAAGAATTTCTGTCGTT
14305563 TCAGTCGAAAACCCTAAACACTTTCAAAATACCCTAA
195 TCAGTCGAAAACCCTAAACACTTTCAAAATACCCTAA
14305600 ACCCTAACTC
Statistics
Matches: 217, Mismatches: 13, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
231 1 0.00
232 216 1.00
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.30
Consensus pattern (232 bp):
CCGCATAACGACCGTCACCTGGCCTCCCGGTAATACTTGAACTTGTGACTACATCACTGCCGTCG
AATGAGACCTTCACGTTGAATTCAACCCCTGATTGTATCAAACATTATTACCCTGAAACCAGATT
TCCTCACGATGGGTTTCTAAGGTCATGGGTTTCCCTTCAAAACTACCTAAGAATTTCTGTCGTTT
CAGTCGAAAACCCTAAACACTTTCAAAATACCCTAAG
Found at i:14306143 original size:28 final size:28
Alignment explanation
Indices: 14306090--14306143 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
14306080 GATAGAATAC
*
14306090 AAATTTAGGAACCAACTAAATCCAAAAA
1 AAATTTAGGAACCAACTAAATACAAAAA
* * *
14306118 AAATTTAGGAATCAATTAGATACAAA
1 AAATTTAGGAACCAACTAAATACAAA
14306144 TAGATAAATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.56, C:0.13, G:0.09, T:0.22
Consensus pattern (28 bp):
AAATTTAGGAACCAACTAAATACAAAAA
Found at i:14313109 original size:16 final size:15
Alignment explanation
Indices: 14313069--14313100 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
14313059 ACTTAGTCCA
14313069 ATAAATTAGTAACAC
1 ATAAATTAGTAACAC
14313084 ATAAATTAGTAACAC
1 ATAAATTAGTAACAC
14313099 AT
1 AT
14313101 TGAATTAGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.53, C:0.12, G:0.06, T:0.28
Consensus pattern (15 bp):
ATAAATTAGTAACAC
Found at i:14322390 original size:5 final size:5
Alignment explanation
Indices: 14322380--14322406 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
14322370 AAAAAAAGAT
14322380 AATAA AATAA AATAA AATAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AA
14322407 ACGAAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:14329380 original size:43 final size:43
Alignment explanation
Indices: 14329333--14329513 Score: 272
Period size: 43 Copynumber: 4.2 Consensus size: 43
14329323 GTCTTGCATG
* * *
14329333 GAAATCTCATACCGATGCCAAAAGGCCAGCTATGGTCTTACAC
1 GAAATCTCAAACCGATGCCAATAGCCCAGCTATGGTCTTACAC
* **
14329376 GAAATCTTAAATTGATGCCAATAGCCCAGCTATGGTCTTACAC
1 GAAATCTCAAACCGATGCCAATAGCCCAGCTATGGTCTTACAC
* * *
14329419 GAAATCTCAAATCGATGCCAATAGCCCAGCTATGGTTTTACAT
1 GAAATCTCAAACCGATGCCAATAGCCCAGCTATGGTCTTACAC
*
14329462 GAAATCTCAAACCGATGCCAATAGCCCAGCTATGGTCTTAAAC
1 GAAATCTCAAACCGATGCCAATAGCCCAGCTATGGTCTTACAC
14329505 GAAATCTCA
1 GAAATCTCA
14329514 CCTCGGAAGT
Statistics
Matches: 124, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 124 1.00
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (43 bp):
GAAATCTCAAACCGATGCCAATAGCCCAGCTATGGTCTTACAC
Found at i:14329695 original size:31 final size:30
Alignment explanation
Indices: 14329629--14329710 Score: 92
Period size: 31 Copynumber: 2.7 Consensus size: 30
14329619 TCCAATACTA
** *
14329629 AAATCAATTCGGCAATATATATCCATGTAT
1 AAATCAATTCGGCAATATATATCCACATAC
* *
14329659 GAATCAAATTCGGCAATATATATCTACATAC
1 AAATC-AATTCGGCAATATATATCCACATAC
* *
14329690 AAATCAATTCAGCAATGTATA
1 AAATCAATTCGGCAATATATA
14329711 AAACATATAC
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
30 18 0.42
31 25 0.58
ACGTcount: A:0.43, C:0.17, G:0.10, T:0.30
Consensus pattern (30 bp):
AAATCAATTCGGCAATATATATCCACATAC
Found at i:14332622 original size:18 final size:18
Alignment explanation
Indices: 14332599--14332634 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
14332589 ATTTAATTTG
14332599 ACAGAGTTAAAATTTACA
1 ACAGAGTTAAAATTTACA
14332617 ACAGAGTTAAAATTTACA
1 ACAGAGTTAAAATTTACA
14332635 CATAATAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.11, G:0.11, T:0.28
Consensus pattern (18 bp):
ACAGAGTTAAAATTTACA
Found at i:14335958 original size:110 final size:110
Alignment explanation
Indices: 14335827--14336051 Score: 441
Period size: 110 Copynumber: 2.0 Consensus size: 110
14335817 TGTTTAGTTG
*
14335827 AATGCTTAGATGTTTATTTTGTTATGTATGAGTTGGTTGTTTTGCTACCATTTTGATGATGGTTA
1 AATGGTTAGATGTTTATTTTGTTATGTATGAGTTGGTTGTTTTGCTACCATTTTGATGATGGTTA
14335892 AATTGTATCAAATAGGTGCATATGTTGCATGAATTGTTTGGCTCA
66 AATTGTATCAAATAGGTGCATATGTTGCATGAATTGTTTGGCTCA
14335937 AATGGTTAGATGTTTATTTTGTTATGTATGAGTTGGTTGTTTTGCTACCATTTTGATGATGGTTA
1 AATGGTTAGATGTTTATTTTGTTATGTATGAGTTGGTTGTTTTGCTACCATTTTGATGATGGTTA
14336002 AATTGTATCAAATAGGTGCATATGTTGCATGAATTGTTTGGCTCA
66 AATTGTATCAAATAGGTGCATATGTTGCATGAATTGTTTGGCTCA
14336047 AATGG
1 AATGG
14336052 CAAGTTTATG
Statistics
Matches: 114, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
110 114 1.00
ACGTcount: A:0.24, C:0.08, G:0.24, T:0.45
Consensus pattern (110 bp):
AATGGTTAGATGTTTATTTTGTTATGTATGAGTTGGTTGTTTTGCTACCATTTTGATGATGGTTA
AATTGTATCAAATAGGTGCATATGTTGCATGAATTGTTTGGCTCA
Found at i:14342503 original size:15 final size:15
Alignment explanation
Indices: 14342485--14342515 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
14342475 ATTAGATACG
*
14342485 ACACGATTTGATTAT
1 ACACGATTTAATTAT
14342500 ACACGATTTAATTAT
1 ACACGATTTAATTAT
14342515 A
1 A
14342516 TCGGTATGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.13, G:0.10, T:0.39
Consensus pattern (15 bp):
ACACGATTTAATTAT
Found at i:14345356 original size:25 final size:25
Alignment explanation
Indices: 14345312--14345359 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
14345302 AGCATTTTTT
*
14345312 TTTGAGAAGTGCTATAGAAAAGTGA
1 TTTGAGAAGTACTATAGAAAAGTGA
* *
14345337 TTTGAGAAGTACTTTTGAAAAGT
1 TTTGAGAAGTACTATAGAAAAGT
14345360 TTGGTTTAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.38, C:0.04, G:0.25, T:0.33
Consensus pattern (25 bp):
TTTGAGAAGTACTATAGAAAAGTGA
Found at i:14345475 original size:13 final size:13
Alignment explanation
Indices: 14345457--14345481 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14345447 AGCTAATATG
14345457 CATTTAAATAATA
1 CATTTAAATAATA
14345470 CATTTAAATAAT
1 CATTTAAATAAT
14345482 TTACTATTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (13 bp):
CATTTAAATAATA
Found at i:14346491 original size:102 final size:102
Alignment explanation
Indices: 14346315--14346523 Score: 346
Period size: 102 Copynumber: 2.0 Consensus size: 102
14346305 ACCATTCCAT
* * * *
14346315 AATTTTACAACAACTTATTAATCCAACCTAACAAAATTGAACTTGTTTTATCATGTTTTTAAGCT
1 AATTTGACAACAACTTATTAATCCAACCTAACAAAATTCAACTTGTTTCATCATGCTTTTAAGCT
*
14346380 ATTCCATACCCTCATATACCATATCACTTGATCAAGC
66 ATTCCATACCCTCATATACCATATCACTTGATCAAGA
* *
14346417 AATTTGACAACAACTTATTAATCCAACCTAACCAAATTCAGCTTGTTTCATCATGCTTTTAAGCT
1 AATTTGACAACAACTTATTAATCCAACCTAACAAAATTCAACTTGTTTCATCATGCTTTTAAGCT
*
14346482 ATTCCATACCCTCATATACTATATCACTTGATCAAGA
66 ATTCCATACCCTCATATACCATATCACTTGATCAAGA
14346519 AATTT
1 AATTT
14346524 TTCATTCATG
Statistics
Matches: 99, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
102 99 1.00
ACGTcount: A:0.35, C:0.23, G:0.06, T:0.36
Consensus pattern (102 bp):
AATTTGACAACAACTTATTAATCCAACCTAACAAAATTCAACTTGTTTCATCATGCTTTTAAGCT
ATTCCATACCCTCATATACCATATCACTTGATCAAGA
Found at i:14350020 original size:30 final size:30
Alignment explanation
Indices: 14349986--14350042 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
14349976 ATATATTTTC
14349986 GGGTTCTAAGTGTAAAACTGGGAATTTATG
1 GGGTTCTAAGTGTAAAACTGGGAATTTATG
*
14350016 GGGTTCTAAGTGTAAAATTGGGAATTT
1 GGGTTCTAAGTGTAAAACTGGGAATTT
14350043 TTAGGGTTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.05, G:0.30, T:0.35
Consensus pattern (30 bp):
GGGTTCTAAGTGTAAAACTGGGAATTTATG
Found at i:14350050 original size:30 final size:30
Alignment explanation
Indices: 14349981--14350050 Score: 104
Period size: 30 Copynumber: 2.3 Consensus size: 30
14349971 CGGGTATATA
*
14349981 TTTTCGGGTTCTAAGTGTAAAACTGGGAAT
1 TTTTAGGGTTCTAAGTGTAAAACTGGGAAT
* * *
14350011 TTATGGGGTTCTAAGTGTAAAATTGGGAAT
1 TTTTAGGGTTCTAAGTGTAAAACTGGGAAT
14350041 TTTTAGGGTT
1 TTTTAGGGTT
14350051 TCTAGTAATT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.26, C:0.06, G:0.29, T:0.40
Consensus pattern (30 bp):
TTTTAGGGTTCTAAGTGTAAAACTGGGAAT
Found at i:14353836 original size:15 final size:16
Alignment explanation
Indices: 14353807--14353836 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14353797 CAAACAAGCT
14353807 TTAACACATTATCAAA
1 TTAACACATTATCAAA
14353823 TTAACACA-TATCAA
1 TTAACACATTATCAA
14353837 CAAGGGACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:14356042 original size:25 final size:25
Alignment explanation
Indices: 14355998--14356046 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
14355988 GCTATGTTCC
*
14355998 AATCTACAACTCATGTGAGCATACT
1 AATCTACAACTCATGAGAGCATACT
* *
14356023 AATCTACAGCTCGTGAGAGCATAC
1 AATCTACAACTCATGAGAGCATAC
14356047 CGATTTATAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.24
Consensus pattern (25 bp):
AATCTACAACTCATGAGAGCATACT
Found at i:14356058 original size:25 final size:25
Alignment explanation
Indices: 14356028--14356096 Score: 68
Period size: 25 Copynumber: 2.8 Consensus size: 25
14356018 ATACTAATCT
*
14356028 ACAGCTCGTGAGAGCATACCGATTT
1 ACAGCTCGTGAGAGCATACCGATTC
* * * * *
14356053 ATAGCTAGAGTGAGCATACTGATTC
1 ACAGCTCGTGAGAGCATACCGATTC
14356078 ACAGCTCGT-ATGAGCATAC
1 ACAGCTCGTGA-GAGCATAC
14356097 ATGTACGCAG
Statistics
Matches: 33, Mismatches: 10, Indels: 2
0.73 0.22 0.04
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (25 bp):
ACAGCTCGTGAGAGCATACCGATTC
Found at i:14365887 original size:22 final size:22
Alignment explanation
Indices: 14365862--14365917 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
14365852 GTAAGAGGAT
*
14365862 AGCATTGAAGTGCTAAGCAGAA
1 AGCATCGAAGTGCTAAGCAGAA
* *
14365884 AGCACCGAAGTGCTAAGCAGAG
1 AGCATCGAAGTGCTAAGCAGAA
*
14365906 AGCATCAAAGTG
1 AGCATCGAAGTG
14365918 TTTAATAGAG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.39, C:0.18, G:0.29, T:0.14
Consensus pattern (22 bp):
AGCATCGAAGTGCTAAGCAGAA
Found at i:14374430 original size:15 final size:15
Alignment explanation
Indices: 14374410--14374458 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
14374400 GCAAGAACAC
14374410 CCTTGGGAACAACTA
1 CCTTGGGAACAACTA
*
14374425 CCTTGGAGAACATC-A
1 CCTTGG-GAACAACTA
**
14374440 TGTTGGGAACAACTA
1 CCTTGGGAACAACTA
14374455 CCTT
1 CCTT
14374459 TTGGAATAAC
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
14 6 0.23
15 14 0.54
16 6 0.23
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.24
Consensus pattern (15 bp):
CCTTGGGAACAACTA
Found at i:14375170 original size:21 final size:22
Alignment explanation
Indices: 14375139--14375180 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
14375129 ATATTTCTCC
*
14375139 TCTTGAATTATGTTATTTATGT
1 TCTTGAATTATATTATTTATGT
14375161 TCTT-AATTATATTATTTATG
1 TCTTGAATTATATTATTTATG
14375181 CTTATATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.26, C:0.05, G:0.10, T:0.60
Consensus pattern (22 bp):
TCTTGAATTATATTATTTATGT
Found at i:14376260 original size:14 final size:14
Alignment explanation
Indices: 14376241--14376268 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
14376231 ATAAAATTAT
14376241 AATTGATATTTAAA
1 AATTGATATTTAAA
14376255 AATTGATATTTAAA
1 AATTGATATTTAAA
14376269 GATACAATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (14 bp):
AATTGATATTTAAA
Found at i:14378896 original size:10 final size:10
Alignment explanation
Indices: 14378881--14378905 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
14378871 ATTAATTATG
14378881 TAAAAAAATA
1 TAAAAAAATA
14378891 TAAAAAAATA
1 TAAAAAAATA
14378901 TAAAA
1 TAAAA
14378906 TATTTTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (10 bp):
TAAAAAAATA
Found at i:14380850 original size:21 final size:22
Alignment explanation
Indices: 14380834--14380875 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
14380824 ACTTAAGTAT
14380834 TTAA-TTGA-ATTAATTAATAG
1 TTAACTTGACATTAATTAATAG
14380854 TTAACTTGACATTAATTTAATA
1 TTAACTTGACATTAA-TTAATA
14380876 AATTTGTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.21
21 4 0.21
22 5 0.26
23 6 0.32
ACGTcount: A:0.43, C:0.05, G:0.07, T:0.45
Consensus pattern (22 bp):
TTAACTTGACATTAATTAATAG
Found at i:14382905 original size:30 final size:30
Alignment explanation
Indices: 14382871--14382935 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 30
14382861 CTGGGCATTT
* * *
14382871 CCACACGGGTAGGACACACGCCCATTTGTG
1 CCACACAGGCAGGACACACGCCCATGTGTG
*
14382901 CCACACAGGCAGGACACATGCCCATGTGTG
1 CCACACAGGCAGGACACACGCCCATGTGTG
*
14382931 TCACA
1 CCACA
14382936 TGGACTGGAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.26, C:0.34, G:0.25, T:0.15
Consensus pattern (30 bp):
CCACACAGGCAGGACACACGCCCATGTGTG
Found at i:14387903 original size:14 final size:13
Alignment explanation
Indices: 14387882--14387923 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
14387872 TTTTTATTTA
14387882 TTTATTTTT-TAT
1 TTTATTTTTCTAT
14387894 TCTTATTTTTCTAT
1 T-TTATTTTTCTAT
*
14387908 TTTATTATTCTTAT
1 TTTATTTTTC-TAT
14387922 TT
1 TT
14387924 GTTTTATTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
12 1 0.04
13 16 0.62
14 9 0.35
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTATTTTTCTAT
Found at i:14387918 original size:22 final size:21
Alignment explanation
Indices: 14387875--14387923 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
14387865 TTTACCCTTT
14387875 TTATTTATTTATTTTTTATTC
1 TTATTTATTTATTTTTTATTC
14387896 TTATTT-TTCTATTTTATTATTC
1 TTATTTATT-TATTTT-TTATTC
14387918 TTATTT
1 TTATTT
14387924 GTTTTATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
20 2 0.08
21 12 0.46
22 12 0.46
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (21 bp):
TTATTTATTTATTTTTTATTC
Found at i:14389289 original size:12 final size:12
Alignment explanation
Indices: 14389272--14389300 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
14389262 GAATTTATTT
14389272 GTTTTCTTTGTA
1 GTTTTCTTTGTA
14389284 GTTTTCTTTGTA
1 GTTTTCTTTGTA
14389296 GTTTT
1 GTTTT
14389301 TATTTATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.07, G:0.17, T:0.69
Consensus pattern (12 bp):
GTTTTCTTTGTA
Found at i:14409097 original size:24 final size:24
Alignment explanation
Indices: 14409065--14409126 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 24
14409055 ATTAAGGTTT
*
14409065 TATTTATTATTAAATTAT-AAAGTA
1 TATTAATTATTAAATTATGAAA-TA
*
14409089 TATTAATTATTATATTATGAAATA
1 TATTAATTATTAAATTATGAAATA
*
14409113 AATTAATTAATTAA
1 TATTAATT-ATTAA
14409127 TTAAGACATA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
24 25 0.78
25 7 0.22
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (24 bp):
TATTAATTATTAAATTATGAAATA
Found at i:14409137 original size:24 final size:24
Alignment explanation
Indices: 14409090--14409137 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
14409080 TATAAAGTAT
*
14409090 ATTAATTATTATATTATGAAATAA
1 ATTAATTATTATATTAAGAAATAA
*
14409114 ATTAATTAATTA-ATTAAGACATAA
1 ATTAATT-ATTATATTAAGAAATAA
14409138 CAAATGTAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.42
Consensus pattern (24 bp):
ATTAATTATTATATTAAGAAATAA
Found at i:14409434 original size:18 final size:18
Alignment explanation
Indices: 14409404--14409464 Score: 79
Period size: 18 Copynumber: 3.3 Consensus size: 18
14409394 TAAATAAAAT
*
14409404 AAAGTAAGTAAAAGAAACT
1 AAAG-AAGTAAAAGAAACA
*
14409423 AAAGAA-TGAAAAGAAAGA
1 AAAGAAGT-AAAAGAAACA
14409441 AAAGAAGTAAAAGAAACA
1 AAAGAAGTAAAAGAAACA
14409459 AAAGAA
1 AAAGAA
14409465 CAACAGAAGC
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
17 1 0.03
18 31 0.84
19 5 0.14
ACGTcount: A:0.70, C:0.03, G:0.18, T:0.08
Consensus pattern (18 bp):
AAAGAAGTAAAAGAAACA
Found at i:14409461 original size:9 final size:9
Alignment explanation
Indices: 14409413--14409464 Score: 50
Period size: 9 Copynumber: 5.8 Consensus size: 9
14409403 TAAAGTAAGT
14409413 AAAAGAAAC
1 AAAAGAAAC
* **
14409422 TAAAGAATG
1 AAAAGAAAC
*
14409431 AAAAGAAAG
1 AAAAGAAAC
**
14409440 AAAAGAAGT
1 AAAAGAAAC
14409449 AAAAGAAAC
1 AAAAGAAAC
14409458 AAAAGAA
1 AAAAGAA
14409465 CAACAGAAGC
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
9 34 1.00
ACGTcount: A:0.73, C:0.04, G:0.17, T:0.06
Consensus pattern (9 bp):
AAAAGAAAC
Found at i:14410793 original size:2 final size:2
Alignment explanation
Indices: 14410786--14410822 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
14410776 TTGGGCTACT
*
14410786 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
14410823 ATTTTTCATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (2 bp):
TC
Found at i:14416888 original size:40 final size:40
Alignment explanation
Indices: 14416843--14416923 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
14416833 CCAGGTATAC
14416843 TCTTTGTCTTCTATGCTTAATAACATAATTGTTAATGGTT
1 TCTTTGTCTTCTATGCTTAATAACATAATTGTTAATGGTT
14416883 TCTTTGTCTTCTATGCTTAATAACATAATTGTTAATGGTT
1 TCTTTGTCTTCTATGCTTAATAACATAATTGTTAATGGTT
14416923 T
1 T
14416924 TAATGGTAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.25, C:0.12, G:0.12, T:0.51
Consensus pattern (40 bp):
TCTTTGTCTTCTATGCTTAATAACATAATTGTTAATGGTT
Found at i:14421248 original size:17 final size:17
Alignment explanation
Indices: 14421226--14421259 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
14421216 CACTAATAGT
*
14421226 AAAATGTAATGACAATG
1 AAAATGCAATGACAATG
14421243 AAAATGCAATGACAATG
1 AAAATGCAATGACAATG
14421260 TATACTTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.53, C:0.09, G:0.18, T:0.21
Consensus pattern (17 bp):
AAAATGCAATGACAATG
Found at i:14426262 original size:14 final size:14
Alignment explanation
Indices: 14426234--14426262 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
14426224 GCTTAGTGGC
14426234 TTTTGACTTGATTT
1 TTTTGACTTGATTT
14426248 TTTTG-CTTGATTT
1 TTTTGACTTGATTT
14426261 TT
1 TT
14426263 AAGCAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.10, C:0.07, G:0.14, T:0.69
Consensus pattern (14 bp):
TTTTGACTTGATTT
Found at i:14433080 original size:15 final size:16
Alignment explanation
Indices: 14433062--14433093 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
14433052 GAAAATATAG
14433062 AAAGAAA-AAAAAAGA
1 AAAGAAAGAAAAAAGA
14433077 AAAGAAAGAAAAAAGA
1 AAAGAAAGAAAAAAGA
14433093 A
1 A
14433094 CATATGTACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (16 bp):
AAAGAAAGAAAAAAGA
Found at i:14434496 original size:46 final size:46
Alignment explanation
Indices: 14434308--14434488 Score: 362
Period size: 46 Copynumber: 3.9 Consensus size: 46
14434298 GGAGTGGTTG
14434308 CTATTTATTTTCTATTTTTAGTAGCCATTACCACCAATAAATAATC
1 CTATTTATTTTCTATTTTTAGTAGCCATTACCACCAATAAATAATC
14434354 CTATTTATTTTCTATTTTTAGTAGCCATTACCACCAATAAATAATC
1 CTATTTATTTTCTATTTTTAGTAGCCATTACCACCAATAAATAATC
14434400 CTATTTATTTTCTATTTTTAGTAGCCATTACCACCAATAAATAATC
1 CTATTTATTTTCTATTTTTAGTAGCCATTACCACCAATAAATAATC
14434446 CTATTTATTTTCTATTTTTAGTAGCCATTACCACCAATAAATA
1 CTATTTATTTTCTATTTTTAGTAGCCATTACCACCAATAAATA
14434489 CCCCTATTCC
Statistics
Matches: 135, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 135 1.00
ACGTcount: A:0.33, C:0.19, G:0.04, T:0.44
Consensus pattern (46 bp):
CTATTTATTTTCTATTTTTAGTAGCCATTACCACCAATAAATAATC
Found at i:14438902 original size:28 final size:27
Alignment explanation
Indices: 14438854--14438913 Score: 75
Period size: 28 Copynumber: 2.2 Consensus size: 27
14438844 ACTGTAATGA
* *
14438854 TACTGTATTGGGTTAAAGCCCACACTG
1 TACTGAATTGGGCTAAAGCCCACACTG
* *
14438881 CTACTGAATTGGGCTAAGGCCCTCACTG
1 -TACTGAATTGGGCTAAAGCCCACACTG
14438909 TACTG
1 TACTG
14438914 TCACTAAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 5 0.18
28 23 0.82
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.28
Consensus pattern (27 bp):
TACTGAATTGGGCTAAAGCCCACACTG
Found at i:14440569 original size:12 final size:12
Alignment explanation
Indices: 14440552--14440577 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14440542 TGTATACTTG
14440552 ATTATATCATGT
1 ATTATATCATGT
14440564 ATTATATCATGT
1 ATTATATCATGT
14440576 AT
1 AT
14440578 AAGACTTGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.08, T:0.50
Consensus pattern (12 bp):
ATTATATCATGT
Found at i:14449669 original size:21 final size:21
Alignment explanation
Indices: 14449645--14449694 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
14449635 TAATCCCCAA
14449645 ACTTTAAAATGACTTAAAATC
1 ACTTTAAAATGACTTAAAATC
* * *
14449666 ACTTCAAAATTACTTAAAATT
1 ACTTTAAAATGACTTAAAATC
14449687 AC-TTAAAA
1 ACTTTAAAA
14449695 CCGTCCATCC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 5 0.20
21 20 0.80
ACGTcount: A:0.50, C:0.14, G:0.02, T:0.34
Consensus pattern (21 bp):
ACTTTAAAATGACTTAAAATC
Found at i:14449674 original size:11 final size:10
Alignment explanation
Indices: 14449648--14449694 Score: 67
Period size: 10 Copynumber: 4.6 Consensus size: 10
14449638 TCCCCAAACT
*
14449648 TTAAAATGAC
1 TTAAAATTAC
*
14449658 TTAAAATCAC
1 TTAAAATTAC
14449668 TTCAAAATTAC
1 TT-AAAATTAC
14449679 TTAAAATTAC
1 TTAAAATTAC
14449689 TTAAAA
1 TTAAAA
14449695 CCGTCCATCC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
10 25 0.74
11 9 0.26
ACGTcount: A:0.51, C:0.13, G:0.02, T:0.34
Consensus pattern (10 bp):
TTAAAATTAC
Found at i:14459301 original size:27 final size:27
Alignment explanation
Indices: 14459270--14459929 Score: 560
Period size: 27 Copynumber: 24.4 Consensus size: 27
14459260 CCCAAAATAA
* *
14459270 GTAAAATGACCAAAATACCACTGA-AGG
1 GTAAAATGACCGAAATACC-CTCATAGG
* *
14459297 GTAAAATGACCAAAATACCCTTAATA-G
1 GTAAAATGACCGAAATACCC-TCATAGG
* **
14459324 ATGAAAATGATTGAAATACCC-CATAGG
1 GT-AAAATGACCGAAATACCCTCATAGG
14459351 GTAAAATGATCC-AAATACCCTCATAGG
1 GTAAAATGA-CCGAAATACCCTCATAGG
*
14459378 GTAAAATGACTGAAATACCCTCATAGG
1 GTAAAATGACCGAAATACCCTCATAGG
*
14459405 GTAAAATGACCGAAATACCCCCATAGG
1 GTAAAATGACCGAAATACCCTCATAGG
*
14459432 GTAAAATGATCGAAATACCCTCATAGG
1 GTAAAATGACCGAAATACCCTCATAGG
* *
14459459 ATAAAATGACTGAAATACCC-CTATAGG
1 GTAAAATGACCGAAATACCCTC-ATAGG
** * *
14459486 GTAAAATGATAGAAGTACCCTTAATA-G
1 GTAAAATGACCGAAATACCC-TCATAGG
* * *
14459513 ATGAAAATGACCAAAATACCCTTAATA-G
1 GT-AAAATGACCGAAATACCC-TCATAGG
* ** **
14459541 ATAAAAAATGACTAAAATATTC-CATAGG
1 GT--AAAATGACCGAAATACCCTCATAGG
**
14459569 GTAAAATGATTGAAATACCCTCATAGG
1 GTAAAATGACCGAAATACCCTCATAGG
* * *
14459596 GTAAAATAACCAAAATACCCCCATAGG
1 GTAAAATGACCGAAATACCCTCATAGG
14459623 GTAAAATGACCGAAATACCC-CATAGG
1 GTAAAATGACCGAAATACCCTCATAGG
*
14459649 GTAAAATGACCGAAATAACCC-CATAAG
1 GTAAAATGACCGAAAT-ACCCTCATAGG
*
14459676 GTAAAATGATCGAAATACCGCT-ATAGG
1 GTAAAATGACCGAAATACC-CTCATAGG
* * *
14459703 GAAAAATGACCGAAATACCCCCATAAG
1 GTAAAATGACCGAAATACCCTCATAGG
* * *
14459730 GTTACATGATCGAAATACCC-CTATAGG
1 GTAAAATGACCGAAATACCCTC-ATAGG
***
14459757 GTAAAATGATAAAAATACCC-CTATAGG
1 GTAAAATGACCGAAATACCCTC-ATAGG
* *
14459784 GTAAAATGACCAAAATACCCTTAATA-G
1 GTAAAATGACCGAAATACCC-TCATAGG
* * * * *
14459811 ATGAAAATTACTGAAATTCCCCCATAGG
1 GT-AAAATGACCGAAATACCCTCATAGG
** *
14459839 GTAAAATGACTAAAATACCCCCATAGG
1 GTAAAATGACCGAAATACCCTCATAGG
**
14459866 GTAAAATGATAGAAATACCC-CTATAGG
1 GTAAAATGACCGAAATACCCTC-ATAGG
* *
14459893 ATAAAATGATCGAAATACTCCT-ATAGG
1 GTAAAATGACCGAAATAC-CCTCATAGG
14459920 GTAAAATGAC
1 GTAAAATGAC
14459930 TGTTATGGTC
Statistics
Matches: 526, Mismatches: 81, Indels: 52
0.80 0.12 0.08
Matches are distributed among these distances:
26 63 0.12
27 383 0.73
28 65 0.12
29 15 0.03
ACGTcount: A:0.45, C:0.19, G:0.16, T:0.21
Consensus pattern (27 bp):
GTAAAATGACCGAAATACCCTCATAGG
Found at i:14460104 original size:27 final size:27
Alignment explanation
Indices: 14460066--14460215 Score: 151
Period size: 27 Copynumber: 5.6 Consensus size: 27
14460056 TTTGGAGGTG
* * *
14460066 TAGGGTAAAATGACTGAGATACCCCGA
1 TAGGGTAAAATGACTAAAATACCCCCA
* * *
14460093 TAGGTTAGAATGACCAAAATACCCCCA
1 TAGGGTAAAATGACTAAAATACCCCCA
**
14460120 TAGGGTAAAATGACTAAAATACTTCCA
1 TAGGGTAAAATGACTAAAATACCCCCA
*
14460147 TAGGGTAAAATGA-TAGAAATACCCCTA
1 TAGGGTAAAATGACTA-AAATACCCCCA
* * * *
14460174 TAGGATAAAATGA-TCGAAATACTCCTA
1 TAGGGTAAAATGACT-AAAATACCCCCA
14460201 TAGGGTAAAATGACT
1 TAGGGTAAAATGACT
14460216 GTTATGGTCT
Statistics
Matches: 102, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
26 2 0.02
27 99 0.97
28 1 0.01
ACGTcount: A:0.42, C:0.17, G:0.19, T:0.23
Consensus pattern (27 bp):
TAGGGTAAAATGACTAAAATACCCCCA
Found at i:14460150 original size:285 final size:285
Alignment explanation
Indices: 14459824--14460348 Score: 1023
Period size: 285 Copynumber: 1.8 Consensus size: 285
14459814 AAAATTACTG
*
14459824 AAATTCCCCCATAGGGTAAAATGACTAAAATACCCCCATAGGGTAAAATGATAGAAATACCCCTA
1 AAATACCCCCATAGGGTAAAATGACTAAAATACCCCCATAGGGTAAAATGATAGAAATACCCCTA
14459889 TAGGATAAAATGATCGAAATACTCCTATAGGGTAAAATGACTGTTATGGTCTTATGTTATGTATG
66 TAGGATAAAATGATCGAAATACTCCTATAGGGTAAAATGACTGTTATGGTCTTATGTTATGTATG
14459954 ACTGATTTGCTCTATGATATGTATGACTATGATTGAGCATGACATTTTACATACACGTATTATAT
131 ACTGATTTGCTCTATGATATGTATGACTATGATTGAGCATGACATTTTACATACACGTATTATAT
14460019 TCGGTCACGACATGTTGCATAGGGTTGGGTTGTTATATTTGGAGGTGTAGGGTAAAATGACTGAG
196 TCGGTCACGACATGTTGCATAGGGTTGGGTTGTTATATTTGGAGGTGTAGGGTAAAATGACTGAG
14460084 ATACCCCGATAGGTTAGAATGACCA
261 ATACCCCGATAGGTTAGAATGACCA
**
14460109 AAATACCCCCATAGGGTAAAATGACTAAAATACTTCCATAGGGTAAAATGATAGAAATACCCCTA
1 AAATACCCCCATAGGGTAAAATGACTAAAATACCCCCATAGGGTAAAATGATAGAAATACCCCTA
14460174 TAGGATAAAATGATCGAAATACTCCTATAGGGTAAAATGACTGTTATGGTCTTATGTTATGTATG
66 TAGGATAAAATGATCGAAATACTCCTATAGGGTAAAATGACTGTTATGGTCTTATGTTATGTATG
14460239 ACTGATTTGCTCTATGATATGTATGACTATGATTGAGCATGACATTTTACATACACGTATTATAT
131 ACTGATTTGCTCTATGATATGTATGACTATGATTGAGCATGACATTTTACATACACGTATTATAT
14460304 TCGGTCACGACATGTTGCATAGGGTTGGGTTGTTATATTTGGAGG
196 TCGGTCACGACATGTTGCATAGGGTTGGGTTGTTATATTTGGAGG
14460349 AGGTGTACTA
Statistics
Matches: 237, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
285 237 1.00
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.32
Consensus pattern (285 bp):
AAATACCCCCATAGGGTAAAATGACTAAAATACCCCCATAGGGTAAAATGATAGAAATACCCCTA
TAGGATAAAATGATCGAAATACTCCTATAGGGTAAAATGACTGTTATGGTCTTATGTTATGTATG
ACTGATTTGCTCTATGATATGTATGACTATGATTGAGCATGACATTTTACATACACGTATTATAT
TCGGTCACGACATGTTGCATAGGGTTGGGTTGTTATATTTGGAGGTGTAGGGTAAAATGACTGAG
ATACCCCGATAGGTTAGAATGACCA
Found at i:14460177 original size:81 final size:81
Alignment explanation
Indices: 14460066--14460215 Score: 212
Period size: 81 Copynumber: 1.9 Consensus size: 81
14460056 TTTGGAGGTG
* * *
14460066 TAGGGTAAAATGACTGAGATACCCCGATAGGTTAGAATGACCAAAATACCCCCATAGGGTAAAAT
1 TAGGGTAAAATGACTGAAATACCCCGATAGGATAAAATGACCAAAATACCCCCATAGGGTAAAAT
14460131 GACTAAAATACTTCCA
66 GACTAAAATACTTCCA
* * * * *
14460147 TAGGGTAAAATGA-TAGAAATACCCCTATAGGATAAAATGATCGAAATACTCCTATAGGGTAAAA
1 TAGGGTAAAATGACT-GAAATACCCCGATAGGATAAAATGACCAAAATACCCCCATAGGGTAAAA
14460211 TGACT
65 TGACT
14460216 GTTATGGTCT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
80 1 0.02
81 59 0.98
ACGTcount: A:0.42, C:0.17, G:0.19, T:0.23
Consensus pattern (81 bp):
TAGGGTAAAATGACTGAAATACCCCGATAGGATAAAATGACCAAAATACCCCCATAGGGTAAAAT
GACTAAAATACTTCCA
Found at i:14460645 original size:28 final size:29
Alignment explanation
Indices: 14460602--14460775 Score: 243
Period size: 28 Copynumber: 6.2 Consensus size: 29
14460592 TTACTGCACT
* *
14460602 ACACT-ATTACTATATTGGGCTAAGGCCT
1 ACACTGATTACTGTATTGGGCTAAGGCCC
14460630 ACACTGATT-CTGTATTGGGCTAAGGCCC
1 ACACTGATTACTGTATTGGGCTAAGGCCC
14460658 ACACTG-TTACTGTATTGGGCTAAGGCCC
1 ACACTGATTACTGTATTGGGCTAAGGCCC
*
14460686 ACACTGATT-CTGTATTGGGTTAAGGCCC
1 ACACTGATTACTGTATTGGGCTAAGGCCC
* * *
14460714 ATACTAATT-CTGTATTAGGCTAAGGCCC
1 ACACTGATTACTGTATTGGGCTAAGGCCC
*
14460742 ACACTG-TTACTGTATTGGGCTAAGGTCC
1 ACACTGATTACTGTATTGGGCTAAGGCCC
14460770 ACACTG
1 ACACTG
14460776 TACTGTCACT
Statistics
Matches: 131, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
27 4 0.03
28 122 0.93
29 5 0.04
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.30
Consensus pattern (29 bp):
ACACTGATTACTGTATTGGGCTAAGGCCC
Found at i:14460743 original size:84 final size:84
Alignment explanation
Indices: 14460614--14460775 Score: 270
Period size: 84 Copynumber: 1.9 Consensus size: 84
14460604 ACTATTACTA
* * *
14460614 TATTGGGCTAAGGCCTACACTGATTCTGTATTGGGCTAAGGCCCACACTGTTACTGTATTGGGCT
1 TATTGGGCTAAGGCCCACACTAATTCTGTATTAGGCTAAGGCCCACACTGTTACTGTATTGGGCT
14460679 AAGGCCCACACTGATTCTG
66 AAGGCCCACACTGATTCTG
* *
14460698 TATTGGGTTAAGGCCCATACTAATTCTGTATTAGGCTAAGGCCCACACTGTTACTGTATTGGGCT
1 TATTGGGCTAAGGCCCACACTAATTCTGTATTAGGCTAAGGCCCACACTGTTACTGTATTGGGCT
*
14460763 AAGGTCCACACTG
66 AAGGCCCACACTG
14460776 TACTGTCACT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
84 72 1.00
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.30
Consensus pattern (84 bp):
TATTGGGCTAAGGCCCACACTAATTCTGTATTAGGCTAAGGCCCACACTGTTACTGTATTGGGCT
AAGGCCCACACTGATTCTG
Found at i:14460811 original size:33 final size:33
Alignment explanation
Indices: 14460774--14460836 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
14460764 AGGTCCACAC
14460774 TGTACTGTCACTAAATAAGGCTCAGGCCCATAA
1 TGTACTGTCACTAAATAAGGCTCAGGCCCATAA
*
14460807 TGTACTGTCATTAAATAAGGCTCAGGCCCA
1 TGTACTGTCACTAAATAAGGCTCAGGCCCA
14460837 GACTGTTACT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (33 bp):
TGTACTGTCACTAAATAAGGCTCAGGCCCATAA
Found at i:14464035 original size:45 final size:45
Alignment explanation
Indices: 14463962--14464072 Score: 150
Period size: 45 Copynumber: 2.5 Consensus size: 45
14463952 GAAGGACCAG
* *
14463962 ACACTTATATATTATATTTGTCGATTTCACCGACTAGTGCTGGGC
1 ACACTTATATATTATATTTGTCGATTTCACCGACCAATGCTGGGC
* * * *
14464007 ACACATATATATTGTATTTGTTGGTTTCACCGACCAATGCTGGGC
1 ACACTTATATATTATATTTGTCGATTTCACCGACCAATGCTGGGC
* *
14464052 GCACTTATATATTATAGTTGT
1 ACACTTATATATTATATTTGT
14464073 AGGGAACACA
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 56 1.00
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.39
Consensus pattern (45 bp):
ACACTTATATATTATATTTGTCGATTTCACCGACCAATGCTGGGC
Done.