Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43060996
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2186021 characters in sequence are not A, C, G, or T
File 46 of 128
Found at i:14466448 original size:36 final size:36
Alignment explanation
Indices: 14466408--14466478 Score: 99
Period size: 36 Copynumber: 2.0 Consensus size: 36
14466398 TTTTCAATAG
*
14466408 GCATGCTTTACATGCAAATCAGAATTTCGTA-ATATA
1 GCATGCTTAACATGCAAATCAG-ATTTCGTATATATA
**
14466444 GCATGCTTAACATGCGGATCAGATTTCGTATATAT
1 GCATGCTTAACATGCAAATCAGATTTCGTATATAT
14466479 TTTATCAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
35 8 0.26
36 23 0.74
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (36 bp):
GCATGCTTAACATGCAAATCAGATTTCGTATATATA
Found at i:14469684 original size:16 final size:15
Alignment explanation
Indices: 14469659--14469688 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
14469649 ATTAAATTAA
14469659 TTAACTAAATGCAAG
1 TTAACTAAATGCAAG
14469674 TTAACCTAAATGCAA
1 TTAA-CTAAATGCAA
14469689 TGCAAGGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.47, C:0.17, G:0.10, T:0.27
Consensus pattern (15 bp):
TTAACTAAATGCAAG
Found at i:14491777 original size:33 final size:33
Alignment explanation
Indices: 14491740--14491805 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
14491730 TCCCATCGAG
14491740 TAAGCATGTGGAACACAAAATGAATTTCCCAAA
1 TAAGCATGTGGAACACAAAATGAATTTCCCAAA
*
14491773 TAAGCATGTGGAAGACAAAATGAATTTCCCAAA
1 TAAGCATGTGGAACACAAAATGAATTTCCCAAA
14491806 GGGCTATAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.45, C:0.17, G:0.17, T:0.21
Consensus pattern (33 bp):
TAAGCATGTGGAACACAAAATGAATTTCCCAAA
Found at i:14493205 original size:43 final size:41
Alignment explanation
Indices: 14493117--14493344 Score: 219
Period size: 43 Copynumber: 5.4 Consensus size: 41
14493107 CTCGGTGGAT
** *
14493117 TCAGCACTTAGCAACCACC-TTA-AATTCAGTGATATAGGGAA
1 TCAGCACTTAGCAACC-CCTTTACAA-TCAAAGATACAGGGAA
* *
14493158 TCAGCACATAGCAACCCCTTTCACAATCAAAGATACGGAGGAA
1 TCAGCACTTAGCAACCCCTTT-ACAATCAAAGATACAG-GGAA
*** **
14493201 TCAGCACTTAGCAACCACCTTTATTTTCAGTGATACAGGGAA
1 TCAGCACTTAGCAACC-CCTTTACAATCAAAGATACAGGGAA
* *
14493243 TCAGCACATAGCAACCCCTTTCACAATCAAATATACAGTGGAA
1 TCAGCACTTAGCAACCCCTTT-ACAATCAAAGATACAG-GGAA
* * *
14493286 TCAGCACTTAGCAACCACCTTTAGAATCAATA-ATTCGGGGAA
1 TCAGCACTTAGCAACC-CCTTTACAATCAA-AGATACAGGGAA
14493328 TCAGCACTTAGCAACCC
1 TCAGCACTTAGCAACCC
14493345 TTCGGGGAAT
Statistics
Matches: 155, Mismatches: 23, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
40 2 0.01
41 23 0.15
42 58 0.37
43 61 0.39
44 11 0.07
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.22
Consensus pattern (41 bp):
TCAGCACTTAGCAACCCCTTTACAATCAAAGATACAGGGAA
Found at i:14493255 original size:42 final size:43
Alignment explanation
Indices: 14493117--14493343 Score: 227
Period size: 42 Copynumber: 5.4 Consensus size: 43
14493107 CTCGGTGGAT
* *
14493117 TCAGCACTTAGCAACCACC-TTA-AATTCAGTGATATAG-GGAA
1 TCAGCACTTAGCAACCACCTTTACAA-TCAATGATACAGAGGAA
* * *
14493158 TCAGCACATAGCAACC-CCTTTCACAATCAAAGATACGGAGGAA
1 TCAGCACTTAGCAACCACCTTT-ACAATCAATGATACAGAGGAA
*** *
14493201 TCAGCACTTAGCAACCACCTTTATTTTCAGTGATACAG-GGAA
1 TCAGCACTTAGCAACCACCTTTACAATCAATGATACAGAGGAA
* *
14493243 TCAGCACATAGCAACC-CCTTTCACAATCAAAT-ATACAGTGGAA
1 TCAGCACTTAGCAACCACCTTT-ACAATC-AATGATACAGAGGAA
* * * *
14493286 TCAGCACTTAGCAACCACCTTTAGAATCAATAATTC-GGGGAA
1 TCAGCACTTAGCAACCACCTTTACAATCAATGATACAGAGGAA
14493328 TCAGCACTTAGCAACC
1 TCAGCACTTAGCAACC
14493344 CTTCGGGGAA
Statistics
Matches: 155, Mismatches: 21, Indels: 19
0.79 0.11 0.10
Matches are distributed among these distances:
40 2 0.01
41 22 0.14
42 61 0.39
43 60 0.39
44 10 0.06
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.22
Consensus pattern (43 bp):
TCAGCACTTAGCAACCACCTTTACAATCAATGATACAGAGGAA
Found at i:14493259 original size:85 final size:85
Alignment explanation
Indices: 14493117--14493344 Score: 334
Period size: 85 Copynumber: 2.7 Consensus size: 85
14493107 CTCGGTGGAT
*
14493117 TCAGCACTTAGCAACCACC-TTAAATTCAGTGATATAGGGAATCAGCACATAGCAACCCCTTTCA
1 TCAGCACTTAGCAACCACCTTTAAATTCAGTGATACAGGGAATCAGCACATAGCAACCCCTTTCA
*
14493181 CAATCAAAGATACGGAGGAA
66 CAATCAAAGATACAGAGGAA
**
14493201 TCAGCACTTAGCAACCACCTTTATTTTCAGTGATACAGGGAATCAGCACATAGCAACCCCTTTCA
1 TCAGCACTTAGCAACCACCTTTAAATTCAGTGATACAGGGAATCAGCACATAGCAACCCCTTTCA
* *
14493266 CAATCAAATATACAGTGGAA
66 CAATCAAAGATACAGAGGAA
* * * * *
14493286 TCAGCACTTAGCAACCACCTTTAGAA-TCAATAATTCGGGGAATCAGCACTTAGCAACCC
1 TCAGCACTTAGCAACCACCTTTA-AATTCAGTGATACAGGGAATCAGCACATAGCAACCC
14493345 TTCGGGGAAT
Statistics
Matches: 129, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
84 19 0.15
85 110 0.85
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.22
Consensus pattern (85 bp):
TCAGCACTTAGCAACCACCTTTAAATTCAGTGATACAGGGAATCAGCACATAGCAACCCCTTTCA
CAATCAAAGATACAGAGGAA
Found at i:14512367 original size:25 final size:25
Alignment explanation
Indices: 14512339--14512479 Score: 90
Period size: 25 Copynumber: 5.6 Consensus size: 25
14512329 ATCCATGTAA
*
14512339 TATAACGGGAAGCTCACAAAAAGCC
1 TATAACGGGAAGCTCACAAAGAGCC
* *
14512364 TATAACGGGAAGCAC-CAAATAGCC
1 TATAACGGGAAGCTCACAAAGAGCC
* * * *** *
14512388 ATATAATGGGATGTTCA-AGTTAGCA
1 -TATAACGGGAAGCTCACAAAGAGCC
* *
14512413 T-TAATGGGAACCTCACAAAGAGCC
1 TATAACGGGAAGCTCACAAAGAGCC
* * *
14512437 TTTAATCAGGAAGCTCACGAAGAGCC
1 TATAA-CGGGAAGCTCACAAAGAGCC
*
14512463 ATATAACGGGACGCTCA
1 -TATAACGGGAAGCTCA
14512480 TAAGAGCTGC
Statistics
Matches: 87, Mismatches: 23, Indels: 11
0.72 0.19 0.09
Matches are distributed among these distances:
23 11 0.13
24 14 0.16
25 33 0.38
26 25 0.29
27 4 0.05
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.18
Consensus pattern (25 bp):
TATAACGGGAAGCTCACAAAGAGCC
Found at i:14519007 original size:26 final size:25
Alignment explanation
Indices: 14518824--14519007 Score: 112
Period size: 24 Copynumber: 7.4 Consensus size: 25
14518814 CTCTCAAGCA
**
14518824 CTATAACGGGAAGCT--CATTGAGC
1 CTATAACGGGAAGCTCACAAAGAGC
*
14518847 CTTGTAACGGGAAGCTCACAAAGAGC
1 C-TATAACGGGAAGCTCACAAAGAGC
*
14518873 CTATAACGGGTAGCTC-CAAAGAGC
1 CTATAACGGGAAGCTCACAAAGAGC
* * ** *
14518897 ACT-TAATGGGAAGCAC-CGGATAGC
1 -CTATAACGGGAAGCTCACAAAGAGC
** * **
14518921 CATATAACACGAAGTTCA-AGTGAGC
1 C-TATAACGGGAAGCTCACAAAGAGC
*
14518946 C-CTAACGGGAAGCTCACAAAGAGC
1 CTATAACGGGAAGCTCACAAAGAGC
* * *
14518970 CTTTAATTGGGAAGCTCATAAAGAGC
1 CTATAA-CGGGAAGCTCACAAAGAGC
14518996 CATATAACGGGA
1 C-TATAACGGGA
14519008 CGCTTATAAG
Statistics
Matches: 120, Mismatches: 30, Indels: 19
0.71 0.18 0.11
Matches are distributed among these distances:
23 13 0.11
24 43 0.36
25 31 0.26
26 29 0.24
27 4 0.03
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.18
Consensus pattern (25 bp):
CTATAACGGGAAGCTCACAAAGAGC
Found at i:14520773 original size:29 final size:28
Alignment explanation
Indices: 14520691--14520872 Score: 106
Period size: 29 Copynumber: 6.2 Consensus size: 28
14520681 GTGTGCTAAA
*
14520691 CGATGGTTGAAACCATCC-CTTTTCATTAATT
1 CGATGGTCG-AACCATCCAC-TTTCA-T-ATT
*
14520722 -GATGGTCGAAACTATCC-CTTTTCATATT
1 CGATGGTCG-AACCATCCAC-TTTCATATT
*
14520750 CGATAGTCGAAGCCATCCACTTTCATATT
1 CGATGGTCGAA-CCATCCACTTTCATATT
* *
14520779 CGATGGTCGTCACCATCC-CTTTTCGTATT
1 CGATGGTCG-AACCATCCAC-TTTCATATT
* * * *
14520808 CGATGGTCAAAACCATCCATTTTCTTTAAT
1 CGATGGTC-GAACCATCCACTTTC-ATATT
*
14520838 CGATGG-CTGTCACCATCC-CTTTTCATATT
1 CGATGGTC-G-AACCATCCAC-TTTCATATT
14520867 CGATGG
1 CGATGG
14520873 GTGTCGATAC
Statistics
Matches: 123, Mismatches: 18, Indels: 22
0.75 0.11 0.13
Matches are distributed among these distances:
28 6 0.05
29 73 0.59
30 44 0.36
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.36
Consensus pattern (28 bp):
CGATGGTCGAACCATCCACTTTCATATT
Found at i:14520797 original size:58 final size:59
Alignment explanation
Indices: 14520735--14520870 Score: 186
Period size: 58 Copynumber: 2.3 Consensus size: 59
14520725 GGTCGAAACT
* * *
14520735 ATCCCTTTTCATATTCGATAGTCGAAGCCATCCACTTTC-ATATTCGATGG-TCGTCACC
1 ATCCCTTTTCATATTCGATAGTCAAAACCATCCACTTTCTATAATCGATGGCT-GTCACC
* * * *
14520793 ATCCCTTTTCGTATTCGATGGTCAAAACCATCCATTTTCTTTAATCGATGGCTGTCACC
1 ATCCCTTTTCATATTCGATAGTCAAAACCATCCACTTTCTATAATCGATGGCTGTCACC
14520852 ATCCCTTTTCATATTCGAT
1 ATCCCTTTTCATATTCGAT
14520871 GGGTGTCGAT
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
58 34 0.50
59 33 0.49
60 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.12, T:0.38
Consensus pattern (59 bp):
ATCCCTTTTCATATTCGATAGTCAAAACCATCCACTTTCTATAATCGATGGCTGTCACC
Found at i:14520860 original size:59 final size:58
Alignment explanation
Indices: 14520691--14520872 Score: 213
Period size: 59 Copynumber: 3.1 Consensus size: 58
14520681 GTGTGCTAAA
* * * ** *
14520691 CGATGGTTGAAACCATCCCTTTTCATTAATTGATGGTCGAAACTATCCCTTTTCATATT
1 CGATGGTCGAAACCATCCATTTTC-TTAATCGATGGTCGTCACCATCCCTTTTCATATT
* * * * * *
14520750 CGATAGTCGAAGCCATCCACTTTCATATTCGATGGTCGTCACCATCCCTTTTCGTATT
1 CGATGGTCGAAACCATCCATTTTCTTAATCGATGGTCGTCACCATCCCTTTTCATATT
*
14520808 CGATGGTCAAAACCATCCATTTTCTTTAATCGATGG-CTGTCACCATCCCTTTTCATATT
1 CGATGGTCGAAACCATCCATTTTC-TTAATCGATGGTC-GTCACCATCCCTTTTCATATT
14520867 CGATGG
1 CGATGG
14520873 GTGTCGATAC
Statistics
Matches: 102, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
58 48 0.47
59 54 0.53
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.36
Consensus pattern (58 bp):
CGATGGTCGAAACCATCCATTTTCTTAATCGATGGTCGTCACCATCCCTTTTCATATT
Found at i:14524064 original size:362 final size:363
Alignment explanation
Indices: 14523398--14524110 Score: 1270
Period size: 362 Copynumber: 2.0 Consensus size: 363
14523388 GGGATGGTAT
*
14523398 TTAAAGAACGGGTTAACTGGGATTTCTTTTGAATTAATTTCTTTAGTGGAACGAGATAATTTGGG
1 TTAAAGAACGGGTTAACTGAGATTTCTTTTGAATTAATTTCTTTAGTGGAACGAGATAATTTGGG
14523463 ATCATCGATGACTTTAGTAGTTAGTGGGATAGTGTTCGATCTACAAATATATCTAAATGCAACTG
66 ATCATCGATGACTTTAGTAGTTAGTGGGATAGTGTTCGATCTACAAATATATCTAAATGCAACTG
14523528 TTATGTCTGAGTATCTTACAACGATCTTGTAACACCCCTTACCCGAGACCGTAGCCAGAGTCGAG
131 TTATGTCTGAGTATCTTACAACGATCTTGTAACACCCCTTACCCGAGACCGTAGCCAGAGTCGAG
14523593 CTCGAGGAATAAAAATTTGCTTTTAAAATTTATCTCACTATTTATGATAAAGTTGTCCACTCGCA
196 CTCGAGGAATAAAAATTTGCTTTTAAAATTTATCTCACTATTTATGATAAAGTTGTCCACTCGCA
* * *
14523658 TAGCAGTCACTAAACCATTTATAACTCGGGCTACGGAACTCAAAATTTAAATCTGTAAATTTTCC
261 TAGCAGTCACTAAACCATTTATAACTCGGGATACGAAACTCAAAATTGAAATCTGTAAATTTTCC
14523723 CTGAAACTAGACTCATATATCTTCTTTAAATCTGCAAA
326 CTGAAACTAGACTCATATATCTTCTTTAAATCTGCAAA
*
14523761 TTAAAGAACGGTTTAACTGAGATTTCTTTTGAATTAATTTCTTTAGTGGAACG-GTATAATTTGG
1 TTAAAGAACGGGTTAACTGAGATTTCTTTTGAATTAATTTCTTTAGTGGAACGAG-ATAATTTGG
14523825 GATCATCGATGACTTTAGTAGTT-GTGGGATAGTGTTCGATCTACAAATATATCTAAATGCAACT
65 GATCATCGATGACTTTAGTAGTTAGTGGGATAGTGTTCGATCTACAAATATATCTAAATGCAACT
* * * *
14523889 GTTATGTTTGAGTATCTTACAATGATCTTGTAACAGCCCTTACCTGAGACCGTAGCC-GAAGTCG
130 GTTATGTCTGAGTATCTTACAACGATCTTGTAACACCCCTTACCCGAGACCGTAGCCAG-AGTCG
* *
14523953 AGCTCGAGGCATAAAAATTTGCTTTTAAAATTTATCTCACTATTTATGATACAGTTGTCCACTCG
194 AGCTCGAGGAATAAAAATTTGCTTTTAAAATTTATCTCACTATTTATGATAAAGTTGTCCACTCG
14524018 CATAGCAGTCACTAAACCATTTATAACTCGGGATACGAAACTCAAAATTGAAATCTGTAAATTTT
259 CATAGCAGTCACTAAACCATTTATAACTCGGGATACGAAACTCAAAATTGAAATCTGTAAATTTT
* *
14524083 TCCTGAAACTAGACTTATATATCTTCTT
324 CCCTGAAACTAGACTCATATATCTTCTT
14524111 ACCATAAATT
Statistics
Matches: 335, Mismatches: 13, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
361 1 0.00
362 251 0.75
363 83 0.25
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (363 bp):
TTAAAGAACGGGTTAACTGAGATTTCTTTTGAATTAATTTCTTTAGTGGAACGAGATAATTTGGG
ATCATCGATGACTTTAGTAGTTAGTGGGATAGTGTTCGATCTACAAATATATCTAAATGCAACTG
TTATGTCTGAGTATCTTACAACGATCTTGTAACACCCCTTACCCGAGACCGTAGCCAGAGTCGAG
CTCGAGGAATAAAAATTTGCTTTTAAAATTTATCTCACTATTTATGATAAAGTTGTCCACTCGCA
TAGCAGTCACTAAACCATTTATAACTCGGGATACGAAACTCAAAATTGAAATCTGTAAATTTTCC
CTGAAACTAGACTCATATATCTTCTTTAAATCTGCAAA
Found at i:14533808 original size:40 final size:40
Alignment explanation
Indices: 14533753--14533892 Score: 192
Period size: 40 Copynumber: 3.5 Consensus size: 40
14533743 TTATTGAATA
* *
14533753 ATTGCACTTACGTGCCCCTGTTTGTACTTCAGTACCTCTG
1 ATTGCACTTACGTGCCCCTATTTGTACTTCAGTACCCCTG
* *
14533793 AATGCACTTATGTGCCCCTATTTGTACTTC-GATACCCCTG
1 ATTGCACTTACGTGCCCCTATTTGTACTTCAG-TACCCCTG
* *
14533833 ATTGCACTTACGTGCCACTATTTGCACTTCAGTACCCCTG
1 ATTGCACTTACGTGCCCCTATTTGTACTTCAGTACCCCTG
* *
14533873 GTTGCACTTTCGTGCCCCTA
1 ATTGCACTTACGTGCCCCTA
14533893 GTTATAATCT
Statistics
Matches: 87, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 1 0.01
40 85 0.98
41 1 0.01
ACGTcount: A:0.17, C:0.31, G:0.16, T:0.35
Consensus pattern (40 bp):
ATTGCACTTACGTGCCCCTATTTGTACTTCAGTACCCCTG
Found at i:14533890 original size:20 final size:20
Alignment explanation
Indices: 14533753--14533891 Score: 74
Period size: 20 Copynumber: 7.0 Consensus size: 20
14533743 TTATTGAATA
*
14533753 ATTGCACTTACGTGCCCCTG
1 ATTGCACTTTCGTGCCCCTG
* * * *
14533773 TTTGTAC-TTCAGTACCTCTG
1 ATTGCACTTTC-GTGCCCCTG
*
14533793 AATGCACTTAT-GTGCCCCT-
1 ATTGCACTT-TCGTGCCCCTG
* *
14533812 ATTTGTAC-TTCGATACCCCTG
1 A-TTGCACTTTCG-TGCCCCTG
* *
14533833 ATTGCACTTACGTGCCACT-
1 ATTGCACTTTCGTGCCCCTG
*
14533852 ATTTGCAC-TTCAGTACCCCTG
1 A-TTGCACTTTC-GTGCCCCTG
*
14533873 GTTGCACTTTCGTGCCCCT
1 ATTGCACTTTCGTGCCCCT
14533892 AGTTATAATC
Statistics
Matches: 85, Mismatches: 22, Indels: 24
0.65 0.17 0.18
Matches are distributed among these distances:
18 1 0.01
19 8 0.09
20 67 0.79
21 8 0.09
22 1 0.01
ACGTcount: A:0.17, C:0.32, G:0.17, T:0.35
Consensus pattern (20 bp):
ATTGCACTTTCGTGCCCCTG
Found at i:14538804 original size:13 final size:13
Alignment explanation
Indices: 14538766--14538848 Score: 60
Period size: 13 Copynumber: 6.1 Consensus size: 13
14538756 ATATAGTAAG
14538766 ATGAAATGTTTA-
1 ATGAAATGTTTAT
*
14538778 AGTGAAATGGTTAT
1 A-TGAAATGTTTAT
14538792 ATGAAATGTTTAT
1 ATGAAATGTTTAT
**
14538805 ATGGAAAAATTATAT
1 AT-GAAATGTT-TAT
* *
14538820 ACATGAAATGGTTAA
1 --ATGAAATGTTTAT
*
14538835 ATGAATTGTTTAT
1 ATGAAATGTTTAT
14538848 A
1 A
14538849 CAAAAATATT
Statistics
Matches: 54, Mismatches: 11, Indels: 11
0.71 0.14 0.14
Matches are distributed among these distances:
12 1 0.02
13 34 0.63
14 7 0.13
15 5 0.09
16 5 0.09
17 2 0.04
ACGTcount: A:0.42, C:0.01, G:0.18, T:0.39
Consensus pattern (13 bp):
ATGAAATGTTTAT
Found at i:14543383 original size:14 final size:15
Alignment explanation
Indices: 14543359--14543389 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
14543349 TCAAGCTATG
14543359 TTTACAAGTTATGTT
1 TTTACAAGTTATGTT
14543374 TTTA-AAGTTATGTT
1 TTTACAAGTTATGTT
14543388 TT
1 TT
14543390 ACGCGTCCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.75
15 4 0.25
ACGTcount: A:0.26, C:0.03, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTACAAGTTATGTT
Found at i:14543389 original size:13 final size:14
Alignment explanation
Indices: 14543346--14543391 Score: 53
Period size: 13 Copynumber: 3.4 Consensus size: 14
14543336 TAAGACTCTA
*
14543346 TTTT-CAAGCTATG
1 TTTTACAAGTTATG
14543359 -TTTACAAGTTATG
1 TTTTACAAGTTATG
14543372 TTTTTA-AAGTTATG
1 -TTTTACAAGTTATG
14543386 TTTTAC
1 TTTTAC
14543392 GCGTCCTCCT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
12 3 0.11
13 13 0.46
14 8 0.29
15 4 0.14
ACGTcount: A:0.26, C:0.09, G:0.13, T:0.52
Consensus pattern (14 bp):
TTTTACAAGTTATG
Found at i:14546569 original size:38 final size:38
Alignment explanation
Indices: 14546517--14546593 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
14546507 TTTGTGTTTT
*
14546517 TCTTTGCTAGTTTCTTAACGCGTCTTTTATAAAATAAC
1 TCTTTGCCAGTTTCTTAACGCGTCTTTTATAAAATAAC
* *
14546555 TCTTTGCCATTTTCTTATCGCGTCTTTTATAAAATAAC
1 TCTTTGCCAGTTTCTTAACGCGTCTTTTATAAAATAAC
14546593 T
1 T
14546594 AAATTATAAC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.25, C:0.19, G:0.09, T:0.47
Consensus pattern (38 bp):
TCTTTGCCAGTTTCTTAACGCGTCTTTTATAAAATAAC
Found at i:14547779 original size:13 final size:13
Alignment explanation
Indices: 14547761--14547785 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14547751 CTACAAATGC
14547761 TTGTTTAGTGAAA
1 TTGTTTAGTGAAA
14547774 TTGTTTAGTGAA
1 TTGTTTAGTGAA
14547786 CTAAGCAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.24, T:0.48
Consensus pattern (13 bp):
TTGTTTAGTGAAA
Found at i:14548527 original size:15 final size:15
Alignment explanation
Indices: 14548504--14548546 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
14548494 GTCGAGTTCT
*
14548504 ATTTCTATTTTT-ATG
1 ATTTATATTTTTCA-G
14548519 ATTTATATTTTTCAG
1 ATTTATATTTTTCAG
14548534 ATTTATATATTTT
1 ATTTATAT-TTTT
14548547 TCTTTATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 20 0.80
16 5 0.20
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.65
Consensus pattern (15 bp):
ATTTATATTTTTCAG
Found at i:14548560 original size:20 final size:18
Alignment explanation
Indices: 14548535--14548584 Score: 66
Period size: 20 Copynumber: 2.7 Consensus size: 18
14548525 ATTTTTCAGA
14548535 TTTATATATTTTTCTTTATT
1 TTTATATATTTTT-TTTA-T
*
14548555 TTTATATATTTATTTTAT
1 TTTATATATTTTTTTTAT
14548573 TTTATAT-TTTTT
1 TTTATATATTTTT
14548585 AATGTTTATA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 4 0.14
18 8 0.29
19 4 0.14
20 12 0.43
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTATATATTTTTTTTAT
Found at i:14548596 original size:18 final size:17
Alignment explanation
Indices: 14548522--14548596 Score: 55
Period size: 17 Copynumber: 4.2 Consensus size: 17
14548512 TTTTATGATT
* *
14548522 TATATTTTTCAGATTTA
1 TATATTTTTTATATTTA
*
14548539 TATATTTTTCTTTATTTTTA
1 TATA--TTT-TTTATATTTA
14548559 TATATTTATTT-TATTT-
1 TATATTT-TTTATATTTA
*
14548575 TATATTTTTTAATGTTTA
1 TATATTTTTT-ATATTTA
14548593 TATA
1 TATA
14548597 CATTTTAAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 11
0.73 0.10 0.17
Matches are distributed among these distances:
15 3 0.07
16 7 0.15
17 12 0.26
18 10 0.22
19 3 0.07
20 11 0.24
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.68
Consensus pattern (17 bp):
TATATTTTTTATATTTA
Found at i:14549529 original size:17 final size:18
Alignment explanation
Indices: 14549493--14549530 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
14549483 GTCTTTTATG
* *
14549493 TATATTCTTGTATGTTTT
1 TATATTCTTGGATATTTT
14549511 TATATT-TTGGATATTTT
1 TATATTCTTGGATATTTT
14549528 TAT
1 TAT
14549531 GTAAATTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.21, C:0.03, G:0.11, T:0.66
Consensus pattern (18 bp):
TATATTCTTGGATATTTT
Found at i:14549538 original size:21 final size:21
Alignment explanation
Indices: 14549514--14549553 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14549504 ATGTTTTTAT
*
14549514 ATTTTGGATATTTTTATGTAA
1 ATTTTGGATAATTTTATGTAA
*
14549535 ATTTTGTATAATTTTATGT
1 ATTTTGGATAATTTTATGT
14549554 GTTTTCCTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (21 bp):
ATTTTGGATAATTTTATGTAA
Found at i:14555806 original size:25 final size:25
Alignment explanation
Indices: 14555777--14555838 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 25
14555767 TCTTGTACAT
* *
14555777 GTATGCTCACACGATCTGTGAATC-
1 GTATGCTCACACGAGCTGTAAATCA
*
14555801 GATATGCTCACATGAGCTGTAAATCA
1 G-TATGCTCACACGAGCTGTAAATCA
14555827 GTATGCTCACAC
1 GTATGCTCACAC
14555839 AAATTGTGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
24 1 0.03
25 30 0.94
26 1 0.03
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.27
Consensus pattern (25 bp):
GTATGCTCACACGAGCTGTAAATCA
Found at i:14556348 original size:65 final size:65
Alignment explanation
Indices: 14556244--14556371 Score: 220
Period size: 65 Copynumber: 2.0 Consensus size: 65
14556234 GATCTGTACG
* * *
14556244 GATAAATTGAACTTAATTCAATATATATTTCATTCAATTTAACCCAAATAAATTTTTGGAAAACT
1 GATAAATTCAACTCAATTCAATAGATATTTCATTCAATTTAACCCAAATAAATTTTTGGAAAACT
*
14556309 GATAAATTCAACTCAATTCAATAGATATTTCATTCAATTTAACCCAAATCAATTTTTGGAAAA
1 GATAAATTCAACTCAATTCAATAGATATTTCATTCAATTTAACCCAAATAAATTTTTGGAAAA
14556372 ATTATTATTT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
65 59 1.00
ACGTcount: A:0.43, C:0.14, G:0.06, T:0.37
Consensus pattern (65 bp):
GATAAATTCAACTCAATTCAATAGATATTTCATTCAATTTAACCCAAATAAATTTTTGGAAAACT
Found at i:14561074 original size:30 final size:29
Alignment explanation
Indices: 14561007--14561099 Score: 118
Period size: 29 Copynumber: 3.2 Consensus size: 29
14560997 TCGATTATGA
*
14561007 AAAGGGATGGTGACGACCATCAATTAGTG
1 AAAGGGATGGTGACGACCATCAATTAATG
*
14561036 AAAGGGATGTTGACGACCATCAATTAATG
1 AAAGGGATGGTGACGACCATCAATTAATG
**
14561065 AAGAGGGATGGTTTCGACCATCGAA-T-ATG
1 AA-AGGGATGGTGACGACCATC-AATTAATG
14561094 AAAGGG
1 AAAGGG
14561100 GACAGTTACA
Statistics
Matches: 57, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
28 4 0.07
29 34 0.60
30 17 0.30
31 2 0.04
ACGTcount: A:0.35, C:0.13, G:0.30, T:0.22
Consensus pattern (29 bp):
AAAGGGATGGTGACGACCATCAATTAATG
Found at i:14561114 original size:59 final size:59
Alignment explanation
Indices: 14561003--14561116 Score: 135
Period size: 59 Copynumber: 1.9 Consensus size: 59
14560993 GCTATCGATT
* *
14561003 ATGAAAAGGGATGGTGACGACCATCAATTAGTGAAAGGGATGTTGACGACCATCAATTA
1 ATGAAAAGGGATGGTGACGACCATCAATTAGTGAAAGGGAAGTTGACAACCATCAATTA
* **
14561062 ATGAAGAGGGATGGTTTCGACCATCGAA-TA-TGAAAGGGGACAGTT-ACAACCATCA
1 ATGAAAAGGGATGGTGACGACCATC-AATTAGTGAAA-GGGA-AGTTGACAACCATCA
14561117 TTTAGCACAC
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
58 5 0.11
59 37 0.79
60 5 0.11
ACGTcount: A:0.37, C:0.15, G:0.27, T:0.21
Consensus pattern (59 bp):
ATGAAAAGGGATGGTGACGACCATCAATTAGTGAAAGGGAAGTTGACAACCATCAATTA
Found at i:14567666 original size:4 final size:4
Alignment explanation
Indices: 14567649--14567687 Score: 51
Period size: 4 Copynumber: 9.8 Consensus size: 4
14567639 ACTCGCTTCT
* * *
14567649 TTAC TTAC TCAC TTAC TTGC TTAC TTAC TTGC TTAC TTA
1 TTAC TTAC TTAC TTAC TTAC TTAC TTAC TTAC TTAC TTA
14567688 AATAACTCAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.21, C:0.26, G:0.05, T:0.49
Consensus pattern (4 bp):
TTAC
Found at i:14567679 original size:12 final size:12
Alignment explanation
Indices: 14567649--14567687 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
14567639 ACTCGCTTCT
* *
14567649 TTACTTACTCAC
1 TTACTTGCTTAC
14567661 TTACTTGCTTAC
1 TTACTTGCTTAC
14567673 TTACTTGCTTAC
1 TTACTTGCTTAC
14567685 TTA
1 TTA
14567688 AATAACTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.21, C:0.26, G:0.05, T:0.49
Consensus pattern (12 bp):
TTACTTGCTTAC
Found at i:14568016 original size:50 final size:50
Alignment explanation
Indices: 14567957--14568101 Score: 209
Period size: 50 Copynumber: 2.9 Consensus size: 50
14567947 TATCCTAGAT
** * * * *
14567957 ATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAAC
**
14568007 ATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAAC
*
14568057 ATAGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCC
1 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCC
14568102 NNNNNNNNNN
Statistics
Matches: 84, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 84 1.00
ACGTcount: A:0.20, C:0.32, G:0.23, T:0.26
Consensus pattern (50 bp):
ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAAC
Found at i:14577237 original size:21 final size:22
Alignment explanation
Indices: 14577213--14577257 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
14577203 TATTTAAACC
*
14577213 AAAATAAATTGGATTA-AAATT
1 AAAATAAATTAGATTATAAATT
* *
14577234 AAAATTAATTATATTATAAATT
1 AAAATAAATTAGATTATAAATT
14577256 AA
1 AA
14577258 TATTCATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (22 bp):
AAAATAAATTAGATTATAAATT
Found at i:14578582 original size:26 final size:26
Alignment explanation
Indices: 14578551--14578602 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14578541 AAAATGTACC
14578551 AACCATAA-TAACACATATACATGCCA
1 AACCATAAGT-ACACATATACATGCCA
* *
14578577 AACCATAAGTCCACCTATACATGCCA
1 AACCATAAGTACACATATACATGCCA
14578603 TTATAACCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.44, C:0.31, G:0.06, T:0.19
Consensus pattern (26 bp):
AACCATAAGTACACATATACATGCCA
Found at i:14582977 original size:20 final size:20
Alignment explanation
Indices: 14582949--14582986 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
14582939 TACAGAATAA
14582949 AATAAAC-AACACATTTCATC
1 AATAAACAAACA-ATTTCATC
*
14582969 AATACACAAACAATTTCA
1 AATAAACAAACAATTTCA
14582987 CATTCAATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.53, C:0.24, G:0.00, T:0.24
Consensus pattern (20 bp):
AATAAACAAACAATTTCATC
Found at i:14587437 original size:28 final size:28
Alignment explanation
Indices: 14587395--14587455 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
14587385 CTATTCAGTA
* * *
14587395 ACAGT-ACAGTGTGGGTCTTAGCCCAAT
1 ACAGTAACAATGTGGGCCTTAGCCAAAT
14587422 ACAGTAACAATGTGGGCCTTAGCCAAAT
1 ACAGTAACAATGTGGGCCTTAGCCAAAT
14587450 ACAGTA
1 ACAGTA
14587456 TCGGTGCAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 5 0.17
28 25 0.83
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (28 bp):
ACAGTAACAATGTGGGCCTTAGCCAAAT
Found at i:14587592 original size:26 final size:26
Alignment explanation
Indices: 14587563--14587630 Score: 100
Period size: 26 Copynumber: 2.6 Consensus size: 26
14587553 AACACACCAA
* *
14587563 TATCGCAGCAAAGCTGCCAGTAATAG
1 TATCGCAGCAAAGCTACCAGTAACAG
*
14587589 TATCGCAGCGAAGCTACCAGTAACAG
1 TATCGCAGCAAAGCTACCAGTAACAG
*
14587615 TATCGTAGCAAAGCTA
1 TATCGCAGCAAAGCTA
14587631 GTAACAGTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.35, C:0.24, G:0.22, T:0.19
Consensus pattern (26 bp):
TATCGCAGCAAAGCTACCAGTAACAG
Found at i:14587836 original size:27 final size:27
Alignment explanation
Indices: 14587806--14587943 Score: 159
Period size: 27 Copynumber: 5.1 Consensus size: 27
14587796 GTATAATAAC
* *
14587806 CATTTTACCCTATGGGGGTATTTTAGT
1 CATTTTACCCTATGGGGGTAATTCAGT
* * * *
14587833 CATTTTAACCTATGGAGGTAGTTCGGT
1 CATTTTACCCTATGGGGGTAATTCAGT
* * *
14587860 CATTTTACCTTATAGGGGTAATTCGGT
1 CATTTTACCCTATGGGGGTAATTCAGT
* *
14587887 CATTTTACCTTATAGGGGTAATTCAGT
1 CATTTTACCCTATGGGGGTAATTCAGT
* *
14587914 CATTTTACCCTATGAGGGTAATTCGGT
1 CATTTTACCCTATGGGGGTAATTCAGT
14587941 CAT
1 CAT
14587944 AATAGTGTAA
Statistics
Matches: 96, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 96 1.00
ACGTcount: A:0.22, C:0.16, G:0.22, T:0.40
Consensus pattern (27 bp):
CATTTTACCCTATGGGGGTAATTCAGT
Found at i:14588826 original size:18 final size:18
Alignment explanation
Indices: 14588803--14588844 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
14588793 TTCGGTAATC
*
14588803 AAAGAAG-AGAGAAAGTAA
1 AAAGAAGAAGAAAAAG-AA
14588821 AAAGAAAGAAGAAAAAGAA
1 AAAG-AAGAAGAAAAAGAA
14588840 AAAGA
1 AAAGA
14588845 TGAGGAAGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 5 0.24
19 9 0.43
20 7 0.33
ACGTcount: A:0.74, C:0.00, G:0.24, T:0.02
Consensus pattern (18 bp):
AAAGAAGAAGAAAAAGAA
Found at i:14600282 original size:29 final size:29
Alignment explanation
Indices: 14600240--14600315 Score: 116
Period size: 29 Copynumber: 2.6 Consensus size: 29
14600230 TAAACTACGG
*
14600240 GAAGCGAAAATCAAGGAACCACTTCAATA
1 GAAGAGAAAATCAAGGAACCACTTCAATA
*
14600269 GAAGAGGAAATCAAGGAACCACTTCAATA
1 GAAGAGAAAATCAAGGAACCACTTCAATA
* *
14600298 TAAGATAAAATCAAGGAA
1 GAAGAGAAAATCAAGGAA
14600316 TCGCTACACC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.51, C:0.16, G:0.18, T:0.14
Consensus pattern (29 bp):
GAAGAGAAAATCAAGGAACCACTTCAATA
Found at i:14610749 original size:13 final size:13
Alignment explanation
Indices: 14610731--14610772 Score: 66
Period size: 13 Copynumber: 3.2 Consensus size: 13
14610721 CGCGGCCTGA
14610731 GACACGAGTGTTT
1 GACACGAGTGTTT
14610744 GACACGAGTGTTT
1 GACACGAGTGTTT
* *
14610757 GACACGGGTGTGT
1 GACACGAGTGTTT
14610770 GAC
1 GAC
14610773 CCTACTCAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.21, C:0.17, G:0.36, T:0.26
Consensus pattern (13 bp):
GACACGAGTGTTT
Found at i:14611586 original size:61 final size:61
Alignment explanation
Indices: 14611491--14611612 Score: 210
Period size: 61 Copynumber: 2.0 Consensus size: 61
14611481 GCCTTGGAAC
*
14611491 TTGGGAGTGGTTCCAAAAGGACTTCAAAGAGTAGTTTTACCCCCGATATGTTGAGAAGAGG
1 TTGGGAGTGGTTCCAAAAGGACTTCAAAGAGTAGTTTTACCCCCAATATGTTGAGAAGAGG
*
14611552 TTGGGAG-GAGTTCCAAAAGGACTTTAAAGAGTAGTTTTACCCCCAATATGTTGAGAAGAGG
1 TTGGGAGTG-GTTCCAAAAGGACTTCAAAGAGTAGTTTTACCCCCAATATGTTGAGAAGAGG
14611613 CTTGAGCTAA
Statistics
Matches: 58, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
60 1 0.02
61 57 0.98
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.26
Consensus pattern (61 bp):
TTGGGAGTGGTTCCAAAAGGACTTCAAAGAGTAGTTTTACCCCCAATATGTTGAGAAGAGG
Found at i:14614539 original size:18 final size:18
Alignment explanation
Indices: 14614516--14614554 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
14614506 GTAGTAAAGT
14614516 ATGTAT-AATAAAATTAAA
1 ATGTATAAATAAAA-TAAA
14614534 ATGTATAAAATAAAATAAA
1 ATGTAT-AAATAAAATAAA
14614553 AT
1 AT
14614555 ACAAATTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.32
19 6 0.32
20 7 0.37
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (18 bp):
ATGTATAAATAAAATAAA
Found at i:14619532 original size:13 final size:13
Alignment explanation
Indices: 14619514--14619538 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14619504 AACTATATAC
14619514 AGTAAAAATTTAG
1 AGTAAAAATTTAG
14619527 AGTAAAAATTTA
1 AGTAAAAATTTA
14619539 AAGATGATAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.12, T:0.32
Consensus pattern (13 bp):
AGTAAAAATTTAG
Found at i:14623686 original size:27 final size:27
Alignment explanation
Indices: 14623656--14623863 Score: 258
Period size: 27 Copynumber: 7.7 Consensus size: 27
14623646 GCAGGGTTTA
* *
14623656 CCACAAAGGCATTCCTTTCATAATTT-T
1 CCACAAAGGCTTTCCTTTCAT-ATTTCG
* *
14623683 CCACAAAGGCTTTCTTTTCATGA-TTCT
1 CCACAAAGGCTTTCCTTTCAT-ATTTCG
*
14623710 CCATAAAGGCTTTCCTTTCATATTTCG
1 CCACAAAGGCTTTCCTTTCATATTTCG
* *
14623737 CCATAAAGGATTTCCTTTCATATTTCG
1 CCACAAAGGCTTTCCTTTCATATTTCG
* * *
14623764 CCATAAAGGATTTCCTTTTATATTTCG
1 CCACAAAGGCTTTCCTTTCATATTTCG
14623791 CCACAAAGGCTTTCCTTTCATATTTCG
1 CCACAAAGGCTTTCCTTTCATATTTCG
* *
14623818 CCACAAAGGTTTTCCTTTCATATTTTG
1 CCACAAAGGCTTTCCTTTCATATTTCG
* *
14623845 CCACAAAGGTTTTTCTTTC
1 CCACAAAGGCTTTCCTTTC
14623864 TTAATGTGTT
Statistics
Matches: 165, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
26 3 0.02
27 162 0.98
ACGTcount: A:0.24, C:0.25, G:0.11, T:0.41
Consensus pattern (27 bp):
CCACAAAGGCTTTCCTTTCATATTTCG
Found at i:14624697 original size:17 final size:18
Alignment explanation
Indices: 14624658--14624698 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
14624648 AATTTTGCTG
14624658 TTTCAAAAAAATTCAAGA
1 TTTCAAAAAAATTCAAGA
* *
14624676 -ATCAAGAAAA-TCAAGA
1 TTTCAAAAAAATTCAAGA
14624692 TTTCAAA
1 TTTCAAA
14624699 TCTTTGTCAA
Statistics
Matches: 18, Mismatches: 4, Indels: 3
0.72 0.16 0.12
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.56, C:0.12, G:0.07, T:0.24
Consensus pattern (18 bp):
TTTCAAAAAAATTCAAGA
Found at i:14625786 original size:8 final size:8
Alignment explanation
Indices: 14625773--14625807 Score: 52
Period size: 8 Copynumber: 4.2 Consensus size: 8
14625763 AATTATGTGG
14625773 TGAAATTA
1 TGAAATTA
14625781 TGAAATTA
1 TGAAATTA
*
14625789 TAAAATTA
1 TGAAATTA
14625797 TGAAATATA
1 TGAAAT-TA
14625806 TG
1 TG
14625808 GGTTGCTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
8 20 0.83
9 4 0.17
ACGTcount: A:0.51, C:0.00, G:0.11, T:0.37
Consensus pattern (8 bp):
TGAAATTA
Found at i:14626074 original size:28 final size:28
Alignment explanation
Indices: 14626034--14626088 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
14626024 GTTAGATCGG
14626034 GGCAAAGATAAAGTCTCAGAAGAATCAA
1 GGCAAAGATAAAGTCTCAGAAGAATCAA
14626062 GGCAAAGATAAAGTCTCAGAAGAATCA
1 GGCAAAGATAAAGTCTCAGAAGAATCA
14626089 CCTCCTTATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.49, C:0.15, G:0.22, T:0.15
Consensus pattern (28 bp):
GGCAAAGATAAAGTCTCAGAAGAATCAA
Found at i:14626354 original size:25 final size:25
Alignment explanation
Indices: 14626326--14626410 Score: 88
Period size: 25 Copynumber: 3.4 Consensus size: 25
14626316 CAATTCTCAA
14626326 CTCGTATGAGCTTACCATTATTCAG
1 CTCGTATGAGCTTACCATTATTCAG
* *
14626351 CTCGCACGAGCTTA-CAGTTACTT-AG
1 CTCGTATGAGCTTACCA-TTA-TTCAG
*
14626376 CTCGTATGAGCTTATCGATTA--CAG
1 CTCGTATGAGCTTA-CCATTATTCAG
14626400 CTCGTATGAGC
1 CTCGTATGAGC
14626411 ATACATGTAC
Statistics
Matches: 50, Mismatches: 5, Indels: 11
0.76 0.08 0.17
Matches are distributed among these distances:
24 15 0.30
25 29 0.58
26 5 0.10
27 1 0.02
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.32
Consensus pattern (25 bp):
CTCGTATGAGCTTACCATTATTCAG
Found at i:14626404 original size:24 final size:22
Alignment explanation
Indices: 14626326--14626422 Score: 86
Period size: 25 Copynumber: 4.0 Consensus size: 22
14626316 CAATTCTCAA
14626326 CTCGTATGAGCTTACCATTATTCAG
1 CTCGTATGAGCTTA-CATTA--CAG
* *
14626351 CTCGCACGAGCTTACAGTTACTTAG
1 CTCGTATGAGCTTACA-TTAC--AG
14626376 CTCGTATGAGCTTATCGATTACAG
1 CTCGTATGAGCTTA-C-ATTACAG
*
14626400 CTCGTATGAGCATACATGTACAG
1 CTCGTATGAGCTTACAT-TACAG
14626423 GAATTGACGG
Statistics
Matches: 61, Mismatches: 5, Indels: 14
0.76 0.06 0.17
Matches are distributed among these distances:
22 2 0.03
23 7 0.11
24 17 0.28
25 29 0.48
26 5 0.08
27 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.31
Consensus pattern (22 bp):
CTCGTATGAGCTTACATTACAG
Found at i:14634277 original size:44 final size:43
Alignment explanation
Indices: 14634099--14634545 Score: 116
Period size: 44 Copynumber: 10.2 Consensus size: 43
14634089 TATCTTGGAA
* *
14634099 AGATAAGATTTGCCGTCTT-GATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTCGCCGTCTTCAATCTGCTCCACTACTGC-TAGGG
* ** * * *
14634142 AGATAAGA-TCTACAATCTTCAACCTTCT-CACTGCTGCTCAGGG
1 AGATAAGATTC-GCCGTCTTCAATCTGCTCCACTACTGCT-AGGG
* * * ** * * * *
14634185 AAACAAGGCTT-GGTGGCTTAAATCTGCTTCCCACTA-T-CTTGGAA
1 AGATAA-GATTCGCCGTCTTCAATCTGC-T-CCACTACTGCTAGG-G
*
14634229 AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCATAGGG
1 AGATAAGATTCGCCGTCTTCAATCTGCTCCACTACTGC-TAGGG
* * * * * *
14634273 AGATAAGACCTAC-AC-TCTACAACCTTCTCCACTGCTGCTCAGGG
1 AGATAAGA--TTCGCCGTCTTCAATCTGCTCCACTACTGCT-AGGG
* * ** * * * *
14634317 AGACAAGGCTT-GGTGGCTTAAATCTGCTTCCCACTA-T-CTTGGAA
1 AGATAA-GATTCGCCGTCTTCAATCTGC-T-CCACTACTGCTAGG-G
*
14634361 AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCATAGGG
1 AGATAAGATTCGCCGTCTTCAATCTGCTCCACTACTGC-TAGGG
* * * * * *
14634405 AGATAAGACCTAC-AC-TCTACAACCTTCTCCACTGCTGCTTAGGG
1 AGATAAGA--TTCGCCGTCTTCAATCTGCTCCACTACTGC-TAGGG
* * ** * * * *
14634449 AGACAAGGCTT-GGTGGCTTAAATCTGCTTCCCACTA-T-CTTGGAA
1 AGATAA-GATTCGCCGTCTTCAATCTGC-T-CCACTACTGCTAGG-G
* * *
14634493 AGATAAGATTCGCCGTCTTCGATCTGCTACACTACTACTTAGGG
1 AGATAAGATTCGCCGTCTTCAATCTGCTCCACTACTGC-TAGGG
14634537 AGATAAGAT
1 AGATAAGAT
14634546 CTACACTCTA
Statistics
Matches: 274, Mismatches: 92, Indels: 75
0.62 0.21 0.17
Matches are distributed among these distances:
42 19 0.07
43 62 0.23
44 156 0.57
45 19 0.07
46 18 0.07
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (43 bp):
AGATAAGATTCGCCGTCTTCAATCTGCTCCACTACTGCTAGGG
Found at i:14634360 original size:132 final size:132
Alignment explanation
Indices: 14634045--14634657 Score: 1077
Period size: 132 Copynumber: 4.7 Consensus size: 132
14634035 TACTCCACAA
* *
14634045 CTGCTTAGGGAGATAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTT
1 CTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTC
* * * *
14634110 GCCGTCTT-GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCT-CAC
66 GCCGTCTTCGATCTGCTCCACTACTGCATAGGGAGATAAGACCTACACTCTACAACCTTCTCCAC
14634173 TG
131 TG
* *
14634175 CTGCTCAGGGAAACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTC
1 CTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTC
14634240 GCCGTCTTCGATCTGCTCCACTACTGCATAGGGAGATAAGACCTACACTCTACAACCTTCTCCAC
66 GCCGTCTTCGATCTGCTCCACTACTGCATAGGGAGATAAGACCTACACTCTACAACCTTCTCCAC
14634305 TG
131 TG
*
14634307 CTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTC
1 CTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTC
14634372 GCCGTCTTCGATCTGCTCCACTACTGCATAGGGAGATAAGACCTACACTCTACAACCTTCTCCAC
66 GCCGTCTTCGATCTGCTCCACTACTGCATAGGGAGATAAGACCTACACTCTACAACCTTCTCCAC
14634437 TG
131 TG
14634439 CTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTC
1 CTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTC
* * * *
14634504 GCCGTCTTCGATCTGCTACACTACTACTTAGGGAGATAAGATCTACACTCTACAACCTTCTCCAC
66 GCCGTCTTCGATCTGCTCCACTACTGCATAGGGAGATAAGACCTACACTCTACAACCTTCTCCAC
14634569 TG
131 TG
*
14634571 CTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTT
1 CTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTC
*
14634636 GCCGTCTTCGATCTACTCCACT
66 GCCGTCTTCGATCTGCTCCACT
14634658 GTCAATGCAG
Statistics
Matches: 464, Mismatches: 17, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
130 69 0.15
131 48 0.10
132 347 0.75
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (132 bp):
CTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTC
GCCGTCTTCGATCTGCTCCACTACTGCATAGGGAGATAAGACCTACACTCTACAACCTTCTCCAC
TG
Found at i:14663944 original size:19 final size:20
Alignment explanation
Indices: 14663900--14663944 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
14663890 ATCATGTTCA
14663900 TATTTTTAACATAATTTAAT
1 TATTTTTAACATAATTTAAT
*
14663920 CA-TTTTATA-AT-ATTTAAT
1 TATTTTTA-ACATAATTTAAT
14663938 TATTTTT
1 TATTTTT
14663945 TGACAAGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 5
0.75 0.07 0.18
Matches are distributed among these distances:
18 8 0.38
19 11 0.52
20 2 0.10
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (20 bp):
TATTTTTAACATAATTTAAT
Found at i:14681831 original size:12 final size:12
Alignment explanation
Indices: 14681816--14681840 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14681806 ATGTTTTTCT
14681816 TAGTTGTTTTTG
1 TAGTTGTTTTTG
14681828 TAGTTGTTTTTG
1 TAGTTGTTTTTG
14681840 T
1 T
14681841 TTTTATTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (12 bp):
TAGTTGTTTTTG
Found at i:14683092 original size:11 final size:11
Alignment explanation
Indices: 14683031--14683084 Score: 72
Period size: 11 Copynumber: 4.9 Consensus size: 11
14683021 AAAATTGAAG
14683031 CACCACCATAC
1 CACCACCATAC
* *
14683042 AACCACCATAT
1 CACCACCATAC
*
14683053 CACCACCACAC
1 CACCACCATAC
*
14683064 CACTACCATAC
1 CACCACCATAC
14683075 CACCACCATA
1 CACCACCATA
14683085 TCGCCACCCT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 35 1.00
ACGTcount: A:0.39, C:0.50, G:0.00, T:0.11
Consensus pattern (11 bp):
CACCACCATAC
Found at i:14683978 original size:47 final size:47
Alignment explanation
Indices: 14683870--14683980 Score: 123
Period size: 47 Copynumber: 2.3 Consensus size: 47
14683860 AATTTAATAA
* * *
14683870 TCTACAAATATTGGTGGTTTATCCACAACTATGTGTATTGGTAGTTTG
1 TCTACAAA-ATTGGTGGCTTATCAACAACTATGTGTATTGGTAGCTTG
*** ** * *
14683918 TCTGTGATTTTGGTGGCTTGTCAACAACTATTTGTATTGGTAGCTTG
1 TCTACAAAATTGGTGGCTTATCAACAACTATGTGTATTGGTAGCTTG
14683965 TCTACAAAATTGGTGG
1 TCTACAAAATTGGTGG
14683981 TTTTTCCACA
Statistics
Matches: 48, Mismatches: 15, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
47 44 0.92
48 4 0.08
ACGTcount: A:0.23, C:0.13, G:0.23, T:0.41
Consensus pattern (47 bp):
TCTACAAAATTGGTGGCTTATCAACAACTATGTGTATTGGTAGCTTG
Found at i:14685198 original size:43 final size:42
Alignment explanation
Indices: 14685133--14685247 Score: 119
Period size: 41 Copynumber: 2.7 Consensus size: 42
14685123 AACTCGTACA
* *
14685133 ATGCCATATCCCAGATATGGTCTTACATGTTAATGCATAT-CG
1 ATGCCATGTCCCAGACATGGTCTTACATGTTAAT-CATATACG
* * * *
14685175 ATGCCACTGTCCCAGACAGGGTCTTATACG--AATCATATATG
1 ATGCCA-TGTCCCAGACATGGTCTTACATGTTAATCATATACG
*
14685216 ATGCTGATGTCCCAGACATGGTCTTACATGTT
1 ATGC-CATGTCCCAGACATGGTCTTACATGTT
14685248 TTCTAACTTA
Statistics
Matches: 58, Mismatches: 10, Indels: 9
0.75 0.13 0.12
Matches are distributed among these distances:
40 5 0.09
41 28 0.48
42 7 0.12
43 18 0.31
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (42 bp):
ATGCCATGTCCCAGACATGGTCTTACATGTTAATCATATACG
Found at i:14698838 original size:16 final size:17
Alignment explanation
Indices: 14698807--14698840 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
14698797 CATTATAAGT
*
14698807 AAAATTCATATGTTATA
1 AAAATTCATATATTATA
14698824 AAAATTC-TATATTATA
1 AAAATTCATATATTATA
14698840 A
1 A
14698841 TATTTATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.41
Consensus pattern (17 bp):
AAAATTCATATATTATA
Found at i:14699036 original size:27 final size:26
Alignment explanation
Indices: 14699006--14699064 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
14698996 ATAACCGCAA
14699006 ATATATTATATATAATAAAACCCACAC
1 ATATATTATATATAATAAAA-CCACAC
* * * *
14699033 ATATATTATGTATAGTAGAACCACTC
1 ATATATTATATATAATAAAACCACAC
14699059 ATATAT
1 ATATAT
14699065 ATGTACTATG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 11 0.39
27 17 0.61
ACGTcount: A:0.46, C:0.15, G:0.05, T:0.34
Consensus pattern (26 bp):
ATATATTATATATAATAAAACCACAC
Found at i:14702251 original size:22 final size:21
Alignment explanation
Indices: 14702202--14702253 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
14702192 TGGTTGCTCT
*
14702202 ACGGTGATTGAATGGTGGTGG
1 ACGGTGGTTGAATGGTGGTGG
*
14702223 ACTGGTGGTTGTATGGTGGTGG
1 AC-GGTGGTTGAATGGTGGTGG
*
14702245 TTCGGTGGT
1 -ACGGTGGT
14702254 GGTAGAGTGG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
21 2 0.08
22 23 0.88
23 1 0.04
ACGTcount: A:0.12, C:0.06, G:0.48, T:0.35
Consensus pattern (21 bp):
ACGGTGGTTGAATGGTGGTGG
Found at i:14703239 original size:13 final size:13
Alignment explanation
Indices: 14703221--14703245 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14703211 TAGTTTACCG
14703221 AAATTATTATAAT
1 AAATTATTATAAT
14703234 AAATTATTATAA
1 AAATTATTATAA
14703246 ATATGATTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
AAATTATTATAAT
Found at i:14704910 original size:41 final size:41
Alignment explanation
Indices: 14704861--14704949 Score: 153
Period size: 41 Copynumber: 2.2 Consensus size: 41
14704851 TTTATTCATC
*
14704861 GAACCTTAGTACTTA-TTTTAAGCCAAAAAATACTTCTTGAT
1 GAACCTTAGTACTTATTTTTAA-CCAAAAAATACTTCTTAAT
14704902 GAACCTTAGTACTTATTTTTAACCAAAAAATACTTCTTAAT
1 GAACCTTAGTACTTATTTTTAACCAAAAAATACTTCTTAAT
14704943 GAACCTT
1 GAACCTT
14704950 CATACAAAAC
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
41 40 0.87
42 6 0.13
ACGTcount: A:0.37, C:0.18, G:0.08, T:0.37
Consensus pattern (41 bp):
GAACCTTAGTACTTATTTTTAACCAAAAAATACTTCTTAAT
Found at i:14705911 original size:19 final size:19
Alignment explanation
Indices: 14705884--14705920 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
14705874 AAATCTAAGT
14705884 AAAAACTAAGAAT-AAAAG
1 AAAAACTAAGAATCAAAAG
14705902 AAAAACCTAAGAATCAAAA
1 AAAAA-CTAAGAATCAAAA
14705921 CCCTAAAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 8 0.47
20 4 0.24
ACGTcount: A:0.70, C:0.11, G:0.08, T:0.11
Consensus pattern (19 bp):
AAAAACTAAGAATCAAAAG
Found at i:14706829 original size:23 final size:23
Alignment explanation
Indices: 14706784--14706848 Score: 103
Period size: 23 Copynumber: 2.8 Consensus size: 23
14706774 CTTCTTACGG
*
14706784 GGAGAAATAAGGAAGGTGAAAGAA
1 GGAGAAATAAGGCA-GTGAAAGAA
14706808 GGAGAAATAAGGCAGTGAAAGAA
1 GGAGAAATAAGGCAGTGAAAGAA
*
14706831 GGAGAAATAAGGCGGTGA
1 GGAGAAATAAGGCAGTGA
14706849 GTAGGCAAGG
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
23 26 0.67
24 13 0.33
ACGTcount: A:0.49, C:0.03, G:0.38, T:0.09
Consensus pattern (23 bp):
GGAGAAATAAGGCAGTGAAAGAA
Found at i:14707906 original size:7 final size:7
Alignment explanation
Indices: 14707894--14707921 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
14707884 TTCCTTCTAA
14707894 TTTAGTT
1 TTTAGTT
14707901 TTTAGTT
1 TTTAGTT
14707908 TTTAGTT
1 TTTAGTT
14707915 TTTAGTT
1 TTTAGTT
14707922 CTTTTTAGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.14, C:0.00, G:0.14, T:0.71
Consensus pattern (7 bp):
TTTAGTT
Found at i:14716513 original size:21 final size:18
Alignment explanation
Indices: 14716461--14716503 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 18
14716451 ATGTTCAAAT
*
14716461 TTTTAATAAAATTTAATTA
1 TTTT-ATAAAAATTAATTA
14716480 TTTTATAAAAATTAATTA
1 TTTTATAAAAATTAATTA
14716498 TTTTAT
1 TTTTAT
14716504 GACAAAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTTATAAAAATTAATTA
Found at i:14720031 original size:37 final size:40
Alignment explanation
Indices: 14719959--14720050 Score: 97
Period size: 37 Copynumber: 2.4 Consensus size: 40
14719949 AATCTTGTCG
* * *
14719959 AATAAAAATAAA-ATAAATTAGAAATAAGTAGAACAAA-A
1 AATAAATATAAATATAAATTAGAAATAACTAAAACAAATA
*
14719997 AATAAATATAAATATAAA-TA-AAATTACTAAAACAAATA
1 AATAAATATAAATATAAATTAGAAATAACTAAAACAAATA
14720035 AGA-AAATA-AAATATAA
1 A-ATAAATATAAATATAA
14720051 TTGGGTTGCC
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
37 21 0.45
38 20 0.43
39 6 0.13
ACGTcount: A:0.71, C:0.03, G:0.04, T:0.22
Consensus pattern (40 bp):
AATAAATATAAATATAAATTAGAAATAACTAAAACAAATA
Found at i:14720860 original size:11 final size:11
Alignment explanation
Indices: 14720844--14720878 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
14720834 GAACAGTAAT
14720844 TTACCCATTCA
1 TTACCCATTCA
14720855 TTACCCATTCA
1 TTACCCATTCA
*
14720866 TTACCCATACA
1 TTACCCATTCA
14720877 TT
1 TT
14720879 TGGATGGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.29, C:0.34, G:0.00, T:0.37
Consensus pattern (11 bp):
TTACCCATTCA
Found at i:14729879 original size:20 final size:21
Alignment explanation
Indices: 14729854--14729893 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
14729844 TTTTTAGGAA
*
14729854 TTAAAT-AAATATAATAATTT
1 TTAAATCAAAAATAATAATTT
*
14729874 TTAAATCAAAAATTATAATT
1 TTAAATCAAAAATAATAATT
14729894 ACATTAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (21 bp):
TTAAATCAAAAATAATAATTT
Found at i:14735017 original size:26 final size:26
Alignment explanation
Indices: 14734951--14735028 Score: 84
Period size: 26 Copynumber: 3.0 Consensus size: 26
14734941 CCATCATGCT
* *
14734951 AATATCGCAGCAAAGCTGCCAGTAAT
1 AATAACGCAGCAAAGCTGCCAGTAAC
* * *
14734977 AATAACACAGAAAAGCTGTCAGTAAC
1 AATAACGCAGCAAAGCTGCCAGTAAC
* * *
14735003 AGTAATGCAGCAAAGTTGCCAGTAAC
1 AATAACGCAGCAAAGCTGCCAGTAAC
14735029 GGTATATGTG
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.42, C:0.21, G:0.19, T:0.18
Consensus pattern (26 bp):
AATAACGCAGCAAAGCTGCCAGTAAC
Found at i:14735239 original size:27 final size:27
Alignment explanation
Indices: 14735209--14735325 Score: 121
Period size: 27 Copynumber: 4.3 Consensus size: 27
14735199 AGGGTTATAA
* *
14735209 CAGTCATTTTACCCTATAGGGGTATTT
1 CAGTCATTTTACCCTTTAGGGGTAATT
*
14735236 CAGTCATTTTACCC-TTCGAGGGTAATT
1 CAGTCATTTTACCCTTTAG-GGGTAATT
* * * *
14735263 CGGTCATTTTATCTTTTGGGGGTAATT
1 CAGTCATTTTACCCTTTAGGGGTAATT
*
14735290 C-GATCATTTTACCCTTTTGGGGTAATT
1 CAG-TCATTTTACCCTTTAGGGGTAATT
*
14735317 CGGTCATTT
1 CAGTCATTT
14735326 GTGGCCCATT
Statistics
Matches: 76, Mismatches: 10, Indels: 8
0.81 0.11 0.09
Matches are distributed among these distances:
26 3 0.04
27 69 0.91
28 4 0.05
ACGTcount: A:0.19, C:0.18, G:0.21, T:0.43
Consensus pattern (27 bp):
CAGTCATTTTACCCTTTAGGGGTAATT
Found at i:14742270 original size:26 final size:26
Alignment explanation
Indices: 14742228--14742278 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14742218 ACACCAATAT
* *
14742228 CGCAGCAAAGTTTCCAGTAACAGTAA
1 CGCAGCAAAGCTGCCAGTAACAGTAA
14742254 CGCAGCAAAGCTGCCAGTAACAGTA
1 CGCAGCAAAGCTGCCAGTAACAGTA
14742279 TATGTGACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.37, C:0.25, G:0.22, T:0.16
Consensus pattern (26 bp):
CGCAGCAAAGCTGCCAGTAACAGTAA
Found at i:14743542 original size:25 final size:25
Alignment explanation
Indices: 14743508--14743648 Score: 110
Period size: 25 Copynumber: 5.6 Consensus size: 25
14743498 GGTTGTTACA
14743508 CTTTTCATAAGATTAGCCACAAAGG
1 CTTTTCATAAGATTAGCCACAAAGG
* *
14743533 CTTTTCATAATATTAGCTACAAAGG
1 CTTTTCATAAGATTAGCCACAAAGG
* *
14743558 CTTTCCAGATA-A-TATGCCACAAAGG
1 CTTTTCATA-AGATTA-GCCACAAAGG
* ** *
14743583 ATTTTCATAAGATTAATCATAAAGG
1 CTTTTCATAAGATTAGCCACAAAGG
* * * *
14743608 CTTTCCA-AATAATACTCCACCAAA-G
1 CTTTTCATAAGATTA-GCCA-CAAAGG
14743633 CTTTTCATAAGATTAG
1 CTTTTCATAAGATTAG
14743649 GGTTCAGTTT
Statistics
Matches: 87, Mismatches: 22, Indels: 14
0.71 0.18 0.11
Matches are distributed among these distances:
24 8 0.09
25 68 0.78
26 11 0.13
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (25 bp):
CTTTTCATAAGATTAGCCACAAAGG
Found at i:14743607 original size:50 final size:52
Alignment explanation
Indices: 14743523--14743647 Score: 161
Period size: 50 Copynumber: 2.5 Consensus size: 52
14743513 CATAAGATTA
* *
14743523 GCCACAAAGGCTTTTCATAATATT-AGCTACAAAGGCTTTCCAGATAATA-T
1 GCCACAAAGGCTTTTCATAAGATTAAGCTACAAAGGCTTTCCAAATAATACT
* * *
14743573 GCCACAAAGGATTTTCATAAGATTAATC-ATAAAGGCTTTCCAAATAATACT
1 GCCACAAAGGCTTTTCATAAGATTAAGCTACAAAGGCTTTCCAAATAATACT
14743624 -CCACCAAA-GCTTTTCATAAGATTA
1 GCCA-CAAAGGCTTTTCATAAGATTA
14743648 GGGTTCAGTT
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
50 59 0.89
51 7 0.11
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.30
Consensus pattern (52 bp):
GCCACAAAGGCTTTTCATAAGATTAAGCTACAAAGGCTTTCCAAATAATACT
Found at i:14743773 original size:5 final size:5
Alignment explanation
Indices: 14743763--14743789 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
14743753 AGATACGAGT
14743763 TTTAA TTTAA TTTAA TTTAA TTTAA TT
1 TTTAA TTTAA TTTAA TTTAA TTTAA TT
14743790 CATATTAACC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (5 bp):
TTTAA
Found at i:14748152 original size:25 final size:24
Alignment explanation
Indices: 14748124--14748195 Score: 65
Period size: 24 Copynumber: 3.0 Consensus size: 24
14748114 ATCCAGGAAA
*
14748124 TATAACATGAAGCTCACAAAGAGCC
1 TATAACAGGAAGCTC-CAAAGAGCC
* *
14748149 TATAACGGGTAGCTCCAAAGAGCAC
1 TATAACAGGAAGCTCCAAAGAGC-C
* * *
14748174 T-TAACGGGTAGCTCTAAAGAGC
1 TATAACAGGAAGCTCCAAAGAGC
14748196 ACTTAACGGG
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
24 28 0.67
25 14 0.33
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (24 bp):
TATAACAGGAAGCTCCAAAGAGCC
Found at i:14748178 original size:24 final size:24
Alignment explanation
Indices: 14748134--14748209 Score: 118
Period size: 24 Copynumber: 3.1 Consensus size: 24
14748124 TATAACATGA
14748134 AGCTCACAAAGAGC-CTATAACGGGT
1 AGCTC-CAAAGAGCACT-TAACGGGT
14748159 AGCTCCAAAGAGCACTTAACGGGT
1 AGCTCCAAAGAGCACTTAACGGGT
*
14748183 AGCTCTAAAGAGCACTTAACGGGT
1 AGCTCCAAAGAGCACTTAACGGGT
14748207 AGC
1 AGC
14748210 ACCGGATAGC
Statistics
Matches: 49, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
24 42 0.86
25 7 0.14
ACGTcount: A:0.34, C:0.24, G:0.25, T:0.17
Consensus pattern (24 bp):
AGCTCCAAAGAGCACTTAACGGGT
Found at i:14758055 original size:75 final size:75
Alignment explanation
Indices: 14757927--14758626 Score: 532
Period size: 75 Copynumber: 9.3 Consensus size: 75
14757917 CAATTTGCTA
* ** * *
14757927 ACCTATGTTCACAGTTGATATTTTTATGGT-TCGTTGATTTAAGATCGCAACCCTTAGTTTTCTA
1 ACCTACGTTCACAACTGATATTTTTATGGTCT-ATTGATTTAAGATCGCAACCCTCAGTTTTCTA
* * *
14757991 TCATCTCACTG
65 ACAGCTCGCTG
* * * * * *
14758002 ACCTACATTCATAGCTGATATTTTT-TCGGTCTATTGATTTAAGACCGCGACCCTCAATTTTCTA
1 ACCTACGTTCACAACTGATATTTTTAT-GGTCTATTGATTTAAGATCGCAACCCTCAGTTTTCTA
*
14758066 ACAGCTCGCTA
65 ACAGCTCGCTG
* * * * ** * ** *
14758077 ACCTATGTTCACAATTGATATTTTTACGATCTGCTAATTTAAGATCGTGACCCTCAATTTTCTAA
1 ACCTACGTTCACAACTGATATTTTTATGGTCTATTGATTTAAGATCGCAACCCTCAGTTTTCTAA
14758142 CAGCTCGCTG
66 CAGCTCGCTG
* * * * *
14758152 ACTTATGTTCACAACTGATATTTTTATGGT-TCATTGATTTAAGATTGCAATCCTC-GACTTTCT
1 ACCTACGTTCACAACTGATATTTTTATGGTCT-ATTGATTTAAGATCGCAACCCTCAG-TTTTCT
14758215 AACAGCTCGCTG
64 AACAGCTCGCTG
** *
14758227 ACCTACGTTCACAACTGATATTTTTATGGTCTGCTGATTTAAGATCGTAACCCTCAGTTTTCTAA
1 ACCTACGTTCACAACTGATATTTTTATGGTCTATTGATTTAAGATCGCAACCCTCAGTTTTCTAA
*
14758292 TAGCTCGCTG
66 CAGCTCGCTG
* ** * * *** * **
14758302 ACCTACATTCACAGTTGACATTTTTAAGGTCCGCTGATTTAAGATTGTGACCCTC-GATTTTCTA
1 ACCTACGTTCACAACTGATATTTTTATGGTCTATTGATTTAAGATCGCAACCCTCAG-TTTTCTA
*
14758366 ACAGCTGGCTG
65 ACAGCTCGCTG
* * ** * * ** *
14758377 ACCTACGTTCACAACTAATATTTTTACGGTCTGCTAATTTCAA-ATTGCGCCCCTTAGTTTTCTA
1 ACCTACGTTCACAACTGATATTTTTATGGTCTATTGATTT-AAGATCGCAACCCTCAGTTTTCTA
14758441 ACAGCTCGCTG
65 ACAGCTCGCTG
* * * ** ** * *
14758452 ACCTACGTTCACAACTAAAACTTTTT-CGGTCCGTTGATTTAAGATCGTGACCCTCAATTTGCTA
1 ACCTACGTTCACAACTGATA-TTTTTATGGTCTATTGATTTAAGATCGCAACCCTCAGTTTTCTA
* **
14758516 ACTGCTCATTG
65 ACAGCTCGCTG
** ** * ** * * * * * *
14758527 ACCTACGTTCACATTTGATATTTTTACCGTTTGCTAATTTATGATTGCAGCCCTCAATTTTTTAA
1 ACCTACGTTCACAACTGATATTTTTATGGTCTATTGATTTAAGATCGCAACCCTCAGTTTTCTAA
*
14758592 CAGCTCGTTG
66 CAGCTCGCTG
14758602 ACCTACTACGTTCACAACTGATATT
1 A-C--CTACGTTCACAACTGATATT
14758627 ATTAAGGTTT
Statistics
Matches: 506, Mismatches: 103, Indels: 29
0.79 0.16 0.05
Matches are distributed among these distances:
74 10 0.02
75 466 0.92
76 12 0.02
78 18 0.04
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (75 bp):
ACCTACGTTCACAACTGATATTTTTATGGTCTATTGATTTAAGATCGCAACCCTCAGTTTTCTAA
CAGCTCGCTG
Found at i:14758194 original size:150 final size:150
Alignment explanation
Indices: 14757927--14758679 Score: 674
Period size: 150 Copynumber: 5.0 Consensus size: 150
14757917 CAATTTGCTA
* * * * * ** *
14757927 ACCTATGTTCACAGTTGATATTTTTATGGT-TCGTTGATTTAAGATCGCAACCCTTAGTTTTCTA
1 ACCTACGTTCACAATTGATATTTTTACGGTCT-GCTAATTTAAGATCGTGACCCTCAGTTTTCTA
* * * * * * ** *
14757991 TCATCTCACTGACCTACATTCATAGCTGATATTTTTTCGG-TCTATTGATTTAAGACCGCGACCC
65 ACAGCTCGCTGACCTACGTTCACAACTGATATTTTTAAGGTTC-ATTGATTTAAGATCGCGACCC
*
14758055 TCAATTTTCTAACAGCTCGCTA
129 TCAATTTTCTAACAGCTCGCTG
* * *
14758077 ACCTATGTTCACAATTGATATTTTTACGATCTGCTAATTTAAGATCGTGACCCTCAATTTTCTAA
1 ACCTACGTTCACAATTGATATTTTTACGGTCTGCTAATTTAAGATCGTGACCCTCAGTTTTCTAA
* * * * * *
14758142 CAGCTCGCTGACTTATGTTCACAACTGATATTTTTATGGTTCATTGATTTAAGATTGCAATCCTC
66 CAGCTCGCTGACCTACGTTCACAACTGATATTTTTAAGGTTCATTGATTTAAGATCGCGACCCTC
* *
14758207 GACTTTCTAACAGCTCGCTG
131 AATTTTCTAACAGCTCGCTG
* * * *
14758227 ACCTACGTTCACAACTGATATTTTTATGGTCTGCTGATTTAAGATCGTAACCCTCAGTTTTCTAA
1 ACCTACGTTCACAATTGATATTTTTACGGTCTGCTAATTTAAGATCGTGACCCTCAGTTTTCTAA
* * ** * * ** * *
14758292 TAGCTCGCTGACCTACATTCACAGTTGACATTTTTAAGGTCCGCTGATTTAAGATTGTGACCCTC
66 CAGCTCGCTGACCTACGTTCACAACTGATATTTTTAAGGTTCATTGATTTAAGATCGCGACCCTC
* *
14758357 GATTTTCTAACAGCTGGCTG
131 AATTTTCTAACAGCTCGCTG
* * * * * *
14758377 ACCTACGTTCACAACTAATATTTTTACGGTCTGCTAATTTCAA-ATTGCGCCCCTTAGTTTTCTA
1 ACCTACGTTCACAATTGATATTTTTACGGTCTGCTAATTT-AAGATCGTGACCCTCAGTTTTCTA
* * * * * *
14758441 ACAGCTCGCTGACCTACGTTCACAACTAAAACTTTTT-CGGTCCGTTGATTTAAGATCGTGACCC
65 ACAGCTCGCTGACCTACGTTCACAACTGATA-TTTTTAAGGTTCATTGATTTAAGATCGCGACCC
* * **
14758505 TCAATTTGCTAACTGCTCATTG
129 TCAATTTTCTAACAGCTCGCTG
* * * * * *
14758527 ACCTACGTTCACATTTGATATTTTTACCGTTTGCTAATTTATGAT--TGCAGCCCTCAATTTTTT
1 ACCTACGTTCACAATTGATATTTTTACGGTCTGCTAATTTAAGATCGTG-A-CCCTCAGTTTTCT
* * * * * * *
14758590 AACAGCTCGTTGACCTACTACGTTCACAACTGATATTATTAAGGTTTACTCGATTGAAGATTGTG
64 AACAGCTCGCTGA-C--CTACGTTCACAACTGATATTTTTAAGGTTCA-TTGATTTAAGATCGCG
* *
14758655 ACCTTCAATATTT-TAACAGTTCGCT
125 ACCCTCAAT-TTTCTAACAGCTCGCT
14758680 CGATTTCATA
Statistics
Matches: 490, Mismatches: 100, Indels: 22
0.80 0.16 0.04
Matches are distributed among these distances:
148 1 0.00
149 1 0.00
150 423 0.86
151 11 0.02
152 4 0.01
153 19 0.04
154 29 0.06
155 2 0.00
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.38
Consensus pattern (150 bp):
ACCTACGTTCACAATTGATATTTTTACGGTCTGCTAATTTAAGATCGTGACCCTCAGTTTTCTAA
CAGCTCGCTGACCTACGTTCACAACTGATATTTTTAAGGTTCATTGATTTAAGATCGCGACCCTC
AATTTTCTAACAGCTCGCTG
Found at i:14758327 original size:225 final size:221
Alignment explanation
Indices: 14757933--14758635 Score: 741
Period size: 225 Copynumber: 3.1 Consensus size: 221
14757923 GCTAACCTAT
** * * *
14757933 GTTCACAGTTGATATTTTTATGGTTCGTTGATTTAAGATCGCAACCCTTAGTTTTCTATCATCTC
1 GTTCACAACTGATATTTTTATGGTTC-TTGATTTAAGATTGCAACCCTTAGTTTTCTAACAGCTC
* * * * * * *
14757998 ACTGACCTACATTCATAGCTGATATTTTTTCGGTCTATTGATTTAAGACCGCGACCCTCAATTTT
65 GCTGACCTACGTTCACAACTGATATTTTTT-GGTCTGTTGATTTAAGATCGTGACCCTCAATTTT
* * *
14758063 CTAACAGCTCGCTAACCTATGTTCACAATTGATATTTTTACGATCTGCTAATTTAAGATCGTGAC
129 CTAATAGCTCGCTGACCTACGTTCACAATTGATATTTTTACG-TCTGCTAATTTAAGAT-GTGAC
*
14758128 CCTCAATTTTCTAACAGCTCGCTGACTTAT
192 CCTCAATTTTCTAACAGCTCGCTGACTTAC
* * *
14758158 GTTCACAACTGATATTTTTATGGTTCATTGATTTAAGATTGCAATCC-TCGACTTTCTAACAGCT
1 GTTCACAACTGATATTTTTATGGTTC-TTGATTTAAGATTGCAACCCTTAG-TTTTCTAACAGCT
* * *
14758222 CGCTGACCTACGTTCACAACTGATATTTTTATGGTCTGCTGATTTAAGATCGTAACCCTCAGTTT
64 CGCTGACCTACGTTCACAACTGATATTTTT-TGGTCTGTTGATTTAAGATCGTGACCCTCAATTT
* * * * * *
14758287 TCTAATAGCTCGCTGACCTACATTCACAGTTGACATTTTTAAGGTCCGCTGATTTAAGATTGTGA
128 TCTAATAGCTCGCTGACCTACGTTCACAATTGATATTTTT-ACGTCTGCTAATTTAAGA-TGTGA
* * *
14758352 CCCTCGATTTTCTAACAGCTGGCTGACCTAC
191 CCCTCAATTTTCTAACAGCTCGCTGACTTAC
* * * **
14758383 GTTCACAACTAATATTTTTACGG-TCTGCTAATTTCAA-ATTGCGCCCCTTAGTTTTCTAACAGC
1 GTTCACAACTGATATTTTTATGGTTCT--TGATTT-AAGATTGCAACCCTTAGTTTTCTAACAGC
* * * *
14758446 TCGCTGACCTACGTTCACAACTAAAACTTTTTCGGTCCGTTGATTTAAGATCGTGACCCTCAATT
63 TCGCTGACCTACGTTCACAACTGATA-TTTTTTGGTCTGTTGATTTAAGATCGTGACCCTCAATT
* ** * * *
14758511 TGCTAACT-GCTCATTGACCTACGTTCACATTTGATATTTTTACCGTTTGCTAATTTATGAT-TG
127 TTCTAA-TAGCTCGCTGACCTACGTTCACAATTGATATTTTTA-CGTCTGCTAATTTAAGATGTG
* *
14758574 CAGCCCTCAATTTTTTAACAGCTCGTTGACCTACTAC
190 -A-CCCTCAATTTTCTAACAGCTCGCTGA-CT--TAC
* *
14758611 GTTCACAACTGATATTATTAAGGTT
1 GTTCACAACTGATATTTTTATGGTT
14758636 TACTCGATTG
Statistics
Matches: 395, Mismatches: 66, Indels: 30
0.80 0.13 0.06
Matches are distributed among these distances:
223 3 0.01
224 7 0.02
225 346 0.88
226 15 0.04
228 23 0.06
229 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.38
Consensus pattern (221 bp):
GTTCACAACTGATATTTTTATGGTTCTTGATTTAAGATTGCAACCCTTAGTTTTCTAACAGCTCG
CTGACCTACGTTCACAACTGATATTTTTTGGTCTGTTGATTTAAGATCGTGACCCTCAATTTTCT
AATAGCTCGCTGACCTACGTTCACAATTGATATTTTTACGTCTGCTAATTTAAGATGTGACCCTC
AATTTTCTAACAGCTCGCTGACTTAC
Found at i:14760217 original size:30 final size:30
Alignment explanation
Indices: 14760181--14760254 Score: 80
Period size: 30 Copynumber: 2.4 Consensus size: 30
14760171 ATAAATAAAA
14760181 TTTTTAATAAAAATA-ACTAATTTATTT-T
1 TTTTTAATAAAAATAGACTAATTTATTTAT
** *
14760209 TTAATTTAATATTAATAGATTAATTTATTTAT
1 TT--TTTAATAAAAATAGACTAATTTATTTAT
14760241 TTTTTAAGTAAAAA
1 TTTTTAA-TAAAAA
14760255 AATTAAAACA
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
28 2 0.06
30 16 0.44
31 15 0.42
32 3 0.08
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (30 bp):
TTTTTAATAAAAATAGACTAATTTATTTAT
Found at i:14760473 original size:3 final size:3
Alignment explanation
Indices: 14760465--14760505 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
14760455 TATTTCCCCC
14760465 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
14760506 GTTTTTCTCC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:14766860 original size:41 final size:41
Alignment explanation
Indices: 14766807--14767029 Score: 306
Period size: 41 Copynumber: 5.5 Consensus size: 41
14766797 TTCAAAATTA
* * * *
14766807 GGGCACATATGTGCAACTCAAGGGTATCGAAGTACAAACAG
1 GGGCACGTATGTGCAATTCAGGGGTACCGAAGTACAAACAG
* * *
14766848 GAGCACGTATGTGCAATTCAAGGGTACCGAAGCACAAACAG
1 GGGCACGTATGTGCAATTCAGGGGTACCGAAGTACAAACAG
* * *
14766889 GGGCACGTATGTGTAATTTAGGGGTACCGAAGCACAAACAG
1 GGGCACGTATGTGCAATTCAGGGGTACCGAAGTACAAACAG
* **
14766930 GGGCACATATGTGCAATTCAGGGGTAGTGAAGTACAAACAG
1 GGGCACGTATGTGCAATTCAGGGGTACCGAAGTACAAACAG
14766971 GGGCAC-TATGTGCAATTCAGGGGTACCGAAGTACAAACAG
1 GGGCACGTATGTGCAATTCAGGGGTACCGAAGTACAAACAG
*
14767011 GGGCACG-CTGTGCAATTCA
1 GGGCACGTATGTGCAATTCA
14767030 TACTATAATT
Statistics
Matches: 163, Mismatches: 18, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
40 49 0.30
41 114 0.70
ACGTcount: A:0.33, C:0.19, G:0.30, T:0.18
Consensus pattern (41 bp):
GGGCACGTATGTGCAATTCAGGGGTACCGAAGTACAAACAG
Found at i:14766953 original size:21 final size:20
Alignment explanation
Indices: 14766927--14766993 Score: 64
Period size: 20 Copynumber: 3.3 Consensus size: 20
14766917 GAAGCACAAA
14766927 CAGGGGCACATATGTGCAATT
1 CAGGGGCAC-TATGTGCAATT
* * * * *
14766948 CAGGGGTAGTGAAGTACAA-A
1 CAGGGGCACT-ATGTGCAATT
14766968 CAGGGGCACTATGTGCAATT
1 CAGGGGCACTATGTGCAATT
14766988 CAGGGG
1 CAGGGG
14766994 TACCGAAGTA
Statistics
Matches: 34, Mismatches: 10, Indels: 5
0.69 0.20 0.10
Matches are distributed among these distances:
19 6 0.18
20 15 0.44
21 13 0.38
ACGTcount: A:0.30, C:0.16, G:0.34, T:0.19
Consensus pattern (20 bp):
CAGGGGCACTATGTGCAATT
Found at i:14766973 original size:20 final size:20
Alignment explanation
Indices: 14766908--14767013 Score: 63
Period size: 20 Copynumber: 5.2 Consensus size: 20
14766898 TGTGTAATTT
* *
14766908 AGGGGTACCGAAGCACAAAC
1 AGGGGTACTGAAGTACAAAC
* * * *
14766928 AGGGGCACAT-ATGTGCAATTC
1 AGGGGTAC-TGAAGTACAA-AC
*
14766949 AGGGGTAGTGAAGTACAAAC
1 AGGGGTACTGAAGTACAAAC
* * * *
14766969 AGGGGCACT-ATGTGCAATTC
1 AGGGGTACTGAAGTACAA-AC
*
14766989 AGGGGTACCGAAGTACAAAC
1 AGGGGTACTGAAGTACAAAC
14767009 AGGGG
1 AGGGG
14767014 CACGCTGTGC
Statistics
Matches: 60, Mismatches: 21, Indels: 10
0.66 0.23 0.11
Matches are distributed among these distances:
19 6 0.10
20 35 0.58
21 19 0.32
ACGTcount: A:0.34, C:0.18, G:0.33, T:0.15
Consensus pattern (20 bp):
AGGGGTACTGAAGTACAAAC
Found at i:14769673 original size:37 final size:37
Alignment explanation
Indices: 14769565--14769690 Score: 155
Period size: 37 Copynumber: 3.4 Consensus size: 37
14769555 AGCTCTTCGT
*
14769565 AGCATTTGGCGTGTAATCGGTTGGATTAGCTCTT-TGG
1 AGCATTTGGCGTGTTATCGGTTGGATTAGCTCTTAT-G
* * **
14769602 AGCACTTGGAGTCCTATCGGTTGGATTAGCTCTTATG
1 AGCATTTGGCGTGTTATCGGTTGGATTAGCTCTTATG
* *
14769639 AGCGTTTGGCGTGTTATCGGTTGGATTAACTCTTATG
1 AGCATTTGGCGTGTTATCGGTTGGATTAGCTCTTATG
* *
14769676 AACATTTGGCCTGTT
1 AGCATTTGGCGTGTT
14769691 TTGATTTGAT
Statistics
Matches: 74, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
37 73 0.99
38 1 0.01
ACGTcount: A:0.17, C:0.16, G:0.29, T:0.38
Consensus pattern (37 bp):
AGCATTTGGCGTGTTATCGGTTGGATTAGCTCTTATG
Found at i:14775316 original size:21 final size:21
Alignment explanation
Indices: 14775283--14775339 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
14775273 GTACTATTGT
* *
14775283 TGTGGCTGCATCTGA-TTCTGG
1 TGTGGATGTATCTGACTT-TGG
*
14775304 TGTGGATGTATCTGACTTTGT
1 TGTGGATGTATCTGACTTTGG
*
14775325 TGTTGATGTATCTGA
1 TGTGGATGTATCTGA
14775340 GTGTGCTGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
21 29 0.94
22 2 0.06
ACGTcount: A:0.14, C:0.12, G:0.30, T:0.44
Consensus pattern (21 bp):
TGTGGATGTATCTGACTTTGG
Found at i:14781123 original size:53 final size:54
Alignment explanation
Indices: 14781022--14781146 Score: 123
Period size: 53 Copynumber: 2.3 Consensus size: 54
14781012 ACAACCCAAG
**
14781022 ATTATCTTCTCCTCATTTTAAATTTCTTTTCTAGGACAAAAATTAACATCTCAGT
1 ATTATCTTCTCCT-ATTTTAAATTTCTTTTCTAGGACAAAAACCAACATCTCAGT
* * * * *
14781077 ATTATCTTCT-CT-TTTTATATTCTTTTTTTTAGGATAAAAACCAACATC-CTAGG
1 ATTATCTTCTCCTATTTTAAATT-TCTTTTCTAGGACAAAAACCAACATCTC-AGT
*
14781130 ATTAT-TTCTCCTCTTTT
1 ATTATCTTCTCCTATTTT
14781147 TTTTGGCAGA
Statistics
Matches: 59, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
52 13 0.22
53 30 0.51
54 6 0.10
55 10 0.17
ACGTcount: A:0.27, C:0.19, G:0.06, T:0.48
Consensus pattern (54 bp):
ATTATCTTCTCCTATTTTAAATTTCTTTTCTAGGACAAAAACCAACATCTCAGT
Found at i:14786245 original size:13 final size:13
Alignment explanation
Indices: 14786210--14786247 Score: 67
Period size: 14 Copynumber: 2.8 Consensus size: 13
14786200 GAGATATTTG
14786210 TAATTTGAAAACT
1 TAATTTGAAAACT
14786223 TAAGTTTGAAAACT
1 TAA-TTTGAAAACT
14786237 TAATTTGAAAA
1 TAATTTGAAAA
14786248 TTTGGAAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.47, C:0.05, G:0.11, T:0.37
Consensus pattern (13 bp):
TAATTTGAAAACT
Found at i:14790475 original size:14 final size:14
Alignment explanation
Indices: 14790456--14790489 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
14790446 AACCTTAAAT
14790456 CCCTAAC-TCTTAAC
1 CCCTAACGTC-TAAC
14790470 CCCTAACGTCTAAC
1 CCCTAACGTCTAAC
14790484 CCCTAA
1 CCCTAA
14790490 ACCTTAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 17 0.89
15 2 0.11
ACGTcount: A:0.29, C:0.44, G:0.03, T:0.24
Consensus pattern (14 bp):
CCCTAACGTCTAAC
Found at i:14790543 original size:15 final size:15
Alignment explanation
Indices: 14790508--14790545 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
14790498 TCCCAACCCT
14790508 TAAA-CCATAATCTC
1 TAAATCCATAATCTC
14790522 T-AATCCATAATCTC
1 TAAATCCATAATCTC
14790536 TAAATCCATA
1 TAAATCCATA
14790546 CTCCCTAAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 2 0.09
14 12 0.55
15 8 0.36
ACGTcount: A:0.42, C:0.26, G:0.00, T:0.32
Consensus pattern (15 bp):
TAAATCCATAATCTC
Found at i:14790553 original size:15 final size:15
Alignment explanation
Indices: 14790508--14790554 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
14790498 TCCCAACCCT
*
14790508 TAAA-CCATAATCTC
1 TAAATCCATAATCCC
*
14790522 T-AATCCATAATCTC
1 TAAATCCATAATCCC
*
14790536 TAAATCCATACTCCC
1 TAAATCCATAATCCC
14790551 TAAA
1 TAAA
14790555 CCTTAAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
13 2 0.07
14 12 0.41
15 15 0.52
ACGTcount: A:0.40, C:0.30, G:0.00, T:0.30
Consensus pattern (15 bp):
TAAATCCATAATCCC
Found at i:14790772 original size:22 final size:22
Alignment explanation
Indices: 14790747--14790790 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
14790737 CCTAACTCTT
*
14790747 AACCCCTAA-TGTCTAACCCCTA
1 AACCCCTAACTCT-TAACCCCTA
14790769 AACCCCTAACTCTTAACCCCTA
1 AACCCCTAACTCTTAACCCCTA
14790791 CACCTTAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 18 0.90
23 2 0.10
ACGTcount: A:0.32, C:0.43, G:0.02, T:0.23
Consensus pattern (22 bp):
AACCCCTAACTCTTAACCCCTA
Found at i:14791363 original size:41 final size:41
Alignment explanation
Indices: 14791190--14791371 Score: 170
Period size: 41 Copynumber: 4.4 Consensus size: 41
14791180 TAAATAAACC
*
14791190 AAACGCCGCTAAAGCCCTC-AGCATTAGCGGCGATTTTTAAA
1 AAACGCCGCTAAAGCCC-CAAGCATTAGCGGCGCTTTTTAAA
** * * * * *
14791231 AAACAACGCTAAAACACCGAGCATTAGTGGCGCTTTTTCAA
1 AAACGCCGCTAAAGCCCCAAGCATTAGCGGCGCTTTTTAAA
* * * * * * *
14791272 AAATGTCGCGAAAACCCCAAGCATTAGCGGTGCATTTTCAA
1 AAACGCCGCTAAAGCCCCAAGCATTAGCGGCGCTTTTTAAA
* *
14791313 AAACACCGCTAAAGCCCCAAGCATTAGCGGCGCTTTCTT-GA
1 AAACGCCGCTAAAGCCCCAAGCATTAGCGGCGCTTT-TTAAA
*
14791354 AAGCGCCGCTAAAGCCCC
1 AAACGCCGCTAAAGCCCC
14791372 TAAAGGTAAG
Statistics
Matches: 113, Mismatches: 26, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
40 1 0.01
41 110 0.97
42 2 0.02
ACGTcount: A:0.32, C:0.29, G:0.19, T:0.20
Consensus pattern (41 bp):
AAACGCCGCTAAAGCCCCAAGCATTAGCGGCGCTTTTTAAA
Found at i:14794444 original size:50 final size:50
Alignment explanation
Indices: 14794342--14794512 Score: 168
Period size: 50 Copynumber: 3.4 Consensus size: 50
14794332 GGTCCCAAGA
* * * ** **
14794342 AAGACCATGTCTGGGACATGGCGTTGGTACCGAGATGTGAGGTCCCCCGT
1 AAGACCATGTCTGGGACATGGCGTTGGCACCGACATGAGAACTCCCATGT
* * *
14794392 AAGACCATGTCTGGGACATGGCGTGGGCACCGATATGAGAACTCTCATGT
1 AAGACCATGTCTGGGACATGGCGTTGGCACCGACATGAGAACTCCCATGT
* * * * *
14794442 AAGACCATATCTGGGATATGGCATTTGCA--GTACAGGA-AACATCCCATGT
1 AAGACCATGTCTGGGACATGGCGTTGGCACCG-ACATGAGAAC-TCCCATGT
14794491 AAGACCATGTCTGGGACATGGC
1 AAGACCATGTCTGGGACATGGC
14794513 TTTGACATGT
Statistics
Matches: 100, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
48 4 0.04
49 31 0.31
50 65 0.65
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.22
Consensus pattern (50 bp):
AAGACCATGTCTGGGACATGGCGTTGGCACCGACATGAGAACTCCCATGT
Found at i:14800667 original size:51 final size:51
Alignment explanation
Indices: 14800598--14800695 Score: 137
Period size: 51 Copynumber: 1.9 Consensus size: 51
14800588 AAACATCATG
*
14800598 TCAATTTGATATTAATTTAATAAATCTAATCT-GTAACATTTACACATTTTA
1 TCAATTTGATATTAATTTAATAAAT-TAAGCTAGTAACATTTACACATTTTA
* *
14800649 TCAATTTGATTATT-ATTTAATAAATTTAGCTATTAACATTTACACAT
1 TCAATTTGA-TATTAATTTAATAAATTAAGCTAGTAACATTTACACAT
14800696 CCCATCAACA
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
50 4 0.10
51 34 0.81
52 4 0.10
ACGTcount: A:0.39, C:0.11, G:0.04, T:0.46
Consensus pattern (51 bp):
TCAATTTGATATTAATTTAATAAATTAAGCTAGTAACATTTACACATTTTA
Found at i:14800973 original size:13 final size:12
Alignment explanation
Indices: 14800933--14800970 Score: 51
Period size: 11 Copynumber: 3.2 Consensus size: 12
14800923 GTTTAGAAAA
14800933 TTATTTTTATCTT
1 TTATTTTT-TCTT
*
14800946 ATATTTTTTCTT
1 TTATTTTTTCTT
14800958 TTA-TTTTTCTT
1 TTATTTTTTCTT
14800969 TT
1 TT
14800971 TTAACGATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
11 10 0.43
12 6 0.26
13 7 0.30
ACGTcount: A:0.13, C:0.08, G:0.00, T:0.79
Consensus pattern (12 bp):
TTATTTTTTCTT
Found at i:14801481 original size:16 final size:16
Alignment explanation
Indices: 14801462--14801510 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 16
14801452 CATATTGCTT
14801462 TTATTTAATTTCTCAA
1 TTATTTAATTTCTCAA
*
14801478 TTATTT--TTT-TGAA
1 TTATTTAATTTCTCAA
*
14801491 GT-TTTAATTTCTCAA
1 TTATTTAATTTCTCAA
14801506 TTATT
1 TTATT
14801511 AATACCATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 8
0.68 0.11 0.22
Matches are distributed among these distances:
12 3 0.12
13 4 0.16
14 6 0.24
15 4 0.16
16 8 0.32
ACGTcount: A:0.27, C:0.08, G:0.04, T:0.61
Consensus pattern (16 bp):
TTATTTAATTTCTCAA
Found at i:14806694 original size:26 final size:25
Alignment explanation
Indices: 14806663--14806712 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
14806653 ACGAATTTTC
*
14806663 TCAAAATTTTATCGGGGGTAAAATTG
1 TCAAAATTTTATC-GAGGTAAAATTG
14806689 TCAAAATTTTATCGAGGTAAAATT
1 TCAAAATTTTATCGAGGTAAAATT
14806713 AAGGTGAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.38, C:0.08, G:0.18, T:0.36
Consensus pattern (25 bp):
TCAAAATTTTATCGAGGTAAAATTG
Found at i:14806752 original size:21 final size:22
Alignment explanation
Indices: 14806728--14806769 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
14806718 GAGAAAATTA
*
14806728 TTTAATATG-TAGATATTAAAG
1 TTTAATATGAGAGATATTAAAG
*
14806749 TTTAATTTGAGAGATATTAAA
1 TTTAATATGAGAGATATTAAA
14806770 ACTGAATCGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (22 bp):
TTTAATATGAGAGATATTAAAG
Found at i:14811397 original size:39 final size:39
Alignment explanation
Indices: 14811350--14811481 Score: 192
Period size: 39 Copynumber: 3.4 Consensus size: 39
14811340 GTGCTCGTGT
* *
14811350 TTGTACTTCGGTACCCCTAAATGCACAAATGTGCCCCTA
1 TTGTACTTCGGTACCCCTGAATGCACATATGTGCCCCTA
*
14811389 TTGTACTTCGGTACCCCTGAATGCACATATGTACCCCTA
1 TTGTACTTCGGTACCCCTGAATGCACATATGTGCCCCTA
* * *
14811428 TTGTACTTTGGTACCCCTGAATGCATATATATGCCCCTA
1 TTGTACTTCGGTACCCCTGAATGCACATATGTGCCCCTA
*
14811467 TTTTTACTTCGGTAC
1 -TTGTACTTCGGTAC
14811482 TGTAACACCC
Statistics
Matches: 83, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 71 0.86
40 12 0.14
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.34
Consensus pattern (39 bp):
TTGTACTTCGGTACCCCTGAATGCACATATGTGCCCCTA
Found at i:14811424 original size:20 final size:21
Alignment explanation
Indices: 14811398--14811457 Score: 63
Period size: 19 Copynumber: 3.0 Consensus size: 21
14811388 ATTGTACTTC
14811398 GGTACCCCTGAATGCACATAT
1 GGTACCCCTGAATGCACATAT
* * *
14811419 -GTACCCCT-ATTGTAC-TTT
1 GGTACCCCTGAATGCACATAT
*
14811437 GGTACCCCTGAATGCATATAT
1 GGTACCCCTGAATGCACATAT
14811458 ATGCCCCTAT
Statistics
Matches: 29, Mismatches: 7, Indels: 6
0.69 0.17 0.14
Matches are distributed among these distances:
18 2 0.07
19 13 0.45
20 12 0.41
21 2 0.07
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.32
Consensus pattern (21 bp):
GGTACCCCTGAATGCACATAT
Found at i:14811443 original size:19 final size:19
Alignment explanation
Indices: 14811383--14811445 Score: 65
Period size: 19 Copynumber: 3.3 Consensus size: 19
14811373 CACAAATGTG
*
14811383 CCCCTATTGTACTTCGGTA
1 CCCCTATTGTACTTTGGTA
* * *
14811402 CCCCTGAATGCACATAT-GTA
1 CCCCT-ATTGTAC-TTTGGTA
14811422 CCCCTATTGTACTTTGGTA
1 CCCCTATTGTACTTTGGTA
14811441 CCCCT
1 CCCCT
14811446 GAATGCATAT
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
18 2 0.06
19 18 0.53
20 13 0.38
21 1 0.03
ACGTcount: A:0.19, C:0.33, G:0.14, T:0.33
Consensus pattern (19 bp):
CCCCTATTGTACTTTGGTA
Found at i:14813062 original size:27 final size:27
Alignment explanation
Indices: 14813021--14813595 Score: 645
Period size: 27 Copynumber: 21.3 Consensus size: 27
14813011 AATGGGCCTC
14813021 TAAAATGATCGAAATACCCTCGAAGGG
1 TAAAATGATCGAAATACCCTCGAAGGG
*
14813048 TAAAATGATCAAAATACCCTCGAAGGG
1 TAAAATGATCGAAATACCCTCGAAGGG
*
14813075 TAAAATAATCGAAATACCCTCGAAGGG
1 TAAAATGATCGAAATACCCTCGAAGGG
*
14813102 TAAAATGACCGAAATACCCTCGATA-GG
1 TAAAATGATCGAAATACCCTCGA-AGGG
*
14813129 TAAAATGACCGAAATACCCTCGATA-GG
1 TAAAATGATCGAAATACCCTCGA-AGGG
14813156 TAAAATGATCGAAATAACCCTCGATA--G
1 TAAAATGATCGAAAT-ACCCTCGA-AGGG
*
14813183 TAAAATGACCGAAATACCCTCGATA-GG
1 TAAAATGATCGAAATACCCTCGA-AGGG
* *
14813210 TAAAATGATCGAAATACCTTCGATGGG
1 TAAAATGATCGAAATACCCTCGAAGGG
* *
14813237 TAAAATGATCGAAATACCCTTGATGGG
1 TAAAATGATCGAAATACCCTCGAAGGG
14813264 TAAAATGATCGAAATACCCTCGAAGGG
1 TAAAATGATCGAAATACCCTCGAAGGG
* *
14813291 TAAAATGA-CTGAAATACACTCGATGGG
1 TAAAATGATC-GAAATACCCTCGAAGGG
* *
14813318 TAAAATGACCGAAATACCCTCGATGGG
1 TAAAATGATCGAAATACCCTCGAAGGG
*
14813345 TAAAATGACCGAAATACCCTCGATA-GG
1 TAAAATGATCGAAATACCCTCGA-AGGG
* * * *
14813372 TAAAATGACCGAAATATCTTCGATGGG
1 TAAAATGATCGAAATACCCTCGAAGGG
* *
14813399 TAAAATGA-CTGAAATACCCTTGATGGG
1 TAAAATGATC-GAAATACCCTCGAAGGG
* * *
14813426 TAAAATGACCAAAATACCCTTGAAGGG
1 TAAAATGATCGAAATACCCTCGAAGGG
* *
14813453 TAAAATGA-CTGAAATACACTCGATGGG
1 TAAAATGATC-GAAATACCCTCGAAGGG
*
14813480 TAAAATGA-CAGAAATACCCTCGATGGG
1 TAAAATGATC-GAAATACCCTCGAAGGG
* * *
14813507 TGAAATGA-CAAAAATACCCCCGAAGGG
1 TAAAATGATC-GAAATACCCTCGAAGGG
* * *
14813534 AAAAATGATCAAAATACCCCCGAAGGG
1 TAAAATGATCGAAATACCCTCGAAGGG
*
14813561 TAAAATGA-CTGAAATA-CCTCCATAGGG
1 TAAAATGATC-GAAATACCCTCGA-AGGG
14813588 TAAAATGA
1 TAAAATGA
14813596 CTATTATACC
Statistics
Matches: 492, Mismatches: 42, Indels: 28
0.88 0.07 0.05
Matches are distributed among these distances:
26 18 0.04
27 460 0.93
28 14 0.03
ACGTcount: A:0.41, C:0.18, G:0.20, T:0.20
Consensus pattern (27 bp):
TAAAATGATCGAAATACCCTCGAAGGG
Found at i:14813158 original size:81 final size:80
Alignment explanation
Indices: 14813021--14813596 Score: 730
Period size: 81 Copynumber: 7.1 Consensus size: 80
14813011 AATGGGCCTC
* * * * *
14813021 TAAAATGATCGAAATACCCTCGAAGGGTAAAATGATCAAAATACCCTCGAAGGGTAAAATAATCG
1 TAAAATGACCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCTCGATGGGTAAAATGA-CG
*
14813086 AAATACCCTCGAAGGG
65 AAATACCCTCGATGGG
*
14813102 TAAAATGACCGAAATACCCTCGATA-GGTAAAATGACCGAAATACCCTCGATAGGTAAAATGATC
1 TAAAATGACCGAAATACCCTCGA-AGGGTAAAATGACCGAAATACCCTCGATGGGTAAAATGA-C
*
14813166 GAAATAACCCTCGAT-AG
64 GAAAT-ACCCTCGATGGG
* *
14813183 TAAAATGACCGAAATACCCTCGATA-GGTAAAATGATCGAAATACCTTCGATGGGTAAAATGATC
1 TAAAATGACCGAAATACCCTCGA-AGGGTAAAATGACCGAAATACCCTCGATGGGTAAAATGA-C
*
14813247 GAAATACCCTTGATGGG
64 GAAATACCCTCGATGGG
* * *
14813264 TAAAATGATCGAAATACCCTCGAAGGGTAAAATGACTGAAATACACTCGATGGGTAAAATGACCG
1 TAAAATGACCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCTCGATGGGTAAAATGA-CG
14813329 AAATACCCTCGATGGG
65 AAATACCCTCGATGGG
* *
14813345 TAAAATGACCGAAATACCCTCGATA-GGTAAAATGACCGAAATATCTTCGATGGGTAAAATGACT
1 TAAAATGACCGAAATACCCTCGA-AGGGTAAAATGACCGAAATACCCTCGATGGGTAAAATGAC-
*
14813409 GAAATACCCTTGATGGG
64 GAAATACCCTCGATGGG
* * * *
14813426 TAAAATGACCAAAATACCCTTGAAGGGTAAAATGACTGAAATACACTCGATGGGTAAAATGACAG
1 TAAAATGACCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCTCGATGGGTAAAATGAC-G
14813491 AAATACCCTCGATGGG
65 AAATACCCTCGATGGG
* ** * * * * * *
14813507 TGAAATGACAAAAATACCCCCGAAGGGAAAAATGATCAAAATACCCCCGAAGGGTAAAATGACTG
1 TAAAATGACCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCTCGATGGGTAAAATGAC-G
*
14813572 AAATA-CCTCCATAGGG
65 AAATACCCTCGAT-GGG
14813588 TAAAATGAC
1 TAAAATGAC
14813597 TATTATACCC
Statistics
Matches: 439, Mismatches: 48, Indels: 16
0.87 0.10 0.03
Matches are distributed among these distances:
80 17 0.04
81 412 0.94
82 10 0.02
ACGTcount: A:0.41, C:0.19, G:0.20, T:0.20
Consensus pattern (80 bp):
TAAAATGACCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCTCGATGGGTAAAATGACGA
AATACCCTCGATGGG
Found at i:14813800 original size:26 final size:26
Alignment explanation
Indices: 14813771--14813872 Score: 107
Period size: 26 Copynumber: 3.9 Consensus size: 26
14813761 TTGCCACAAA
* *
14813771 TACTGTTACTGGAAGCTTTGCTACGT
1 TACTGTTACTGGAAGCTTTGCTGCAT
* * * *
14813797 TACTGATACTGGCAGCTCTACTGCAT
1 TACTGTTACTGGAAGCTTTGCTGCAT
*
14813823 TACTGTTACTGGCAGCTTTGCTGCAT
1 TACTGTTACTGGAAGCTTTGCTGCAT
* *
14813849 TACTATTGCTGGCAA-CTTTGCTGC
1 TACTGTTACTGG-AAGCTTTGCTGC
14813873 TATATTGGTG
Statistics
Matches: 63, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
26 62 0.98
27 1 0.02
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (26 bp):
TACTGTTACTGGAAGCTTTGCTGCAT
Found at i:14814016 original size:30 final size:31
Alignment explanation
Indices: 14813980--14814065 Score: 122
Period size: 30 Copynumber: 2.8 Consensus size: 31
14813970 CTGCATTTGC
*
14813980 CTGTTACTGCATTGGGCTAAGGCCCACAC-T
1 CTGTTACTGTATTGGGCTAAGGCCCACACAT
14814010 CTGTTACTGTATTGGGCTAAGGCCCACACAT
1 CTGTTACTGTATTGGGCTAAGGCCCACACAT
* * *
14814041 -TGCTACTGTATAGGGCTCAGGCCCA
1 CTGTTACTGTATTGGGCTAAGGCCCA
14814066 GACTGATTCT
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
30 50 0.98
31 1 0.02
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (31 bp):
CTGTTACTGTATTGGGCTAAGGCCCACACAT
Found at i:14820314 original size:23 final size:22
Alignment explanation
Indices: 14820284--14820350 Score: 64
Period size: 23 Copynumber: 3.0 Consensus size: 22
14820274 GCCCTTGGGA
*
14820284 TAAT-CATGTGAGCCTAAATTAT
1 TAATACATGTGAACCTAAATT-T
**
14820306 TAATACATGCAAACCTAAACTTT
1 TAATACATGTGAACCTAAA-TTT
*
14820329 TAATACATGTGGACCCTAAATT
1 TAATACATGT-GAACCTAAATT
14820351 GAATATTACC
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
22 4 0.11
23 23 0.64
24 9 0.25
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (22 bp):
TAATACATGTGAACCTAAATTT
Found at i:14820555 original size:9 final size:9
Alignment explanation
Indices: 14820543--14820594 Score: 61
Period size: 9 Copynumber: 5.7 Consensus size: 9
14820533 TGTTTAGGGG
14820543 TTTTTTATA
1 TTTTTTATA
14820552 TTTTTTAT-
1 TTTTTTATA
14820560 TTTTTTATA
1 TTTTTTATA
*
14820569 TATTCTTTAGA
1 T-TT-TTTATA
*
14820580 CTTTTTATA
1 TTTTTTATA
14820589 TTTTTT
1 TTTTTT
14820595 GAGTTGTAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
8 8 0.22
9 19 0.53
10 4 0.11
11 5 0.14
ACGTcount: A:0.19, C:0.04, G:0.02, T:0.75
Consensus pattern (9 bp):
TTTTTTATA
Found at i:14825761 original size:10 final size:10
Alignment explanation
Indices: 14825746--14825781 Score: 72
Period size: 10 Copynumber: 3.6 Consensus size: 10
14825736 GATTTAATTC
14825746 TTTTTTTTTG
1 TTTTTTTTTG
14825756 TTTTTTTTTG
1 TTTTTTTTTG
14825766 TTTTTTTTTG
1 TTTTTTTTTG
14825776 TTTTTT
1 TTTTTT
14825782 CATTAATTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:14831445 original size:13 final size:13
Alignment explanation
Indices: 14831423--14831452 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
14831413 AAAAAAAATG
14831423 AATG-AAATGAAA
1 AATGAAAATGAAA
14831435 AATGAAAATGAAA
1 AATGAAAATGAAA
14831448 AATGA
1 AATGA
14831453 CGAAAAAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 4 0.24
13 13 0.76
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.17
Consensus pattern (13 bp):
AATGAAAATGAAA
Found at i:14833376 original size:44 final size:43
Alignment explanation
Indices: 14833257--14833378 Score: 120
Period size: 44 Copynumber: 2.8 Consensus size: 43
14833247 TGAAGAAGCA
* * * *
14833257 AATCTTATCTCCCTAAGGTTGCAGTGGAGCAGATTGAATTCGAT
1 AATCTTATCTCCCTAAAGTTGCAGT-GAGCAGATTAAAGTCAAT
* *
14833301 AATCCTATCTCCCTAAAGTTGTAGTGAAGCAGATTAAAGT-AAT
1 AATCTTATCTCCCTAAAGTTGCAGTG-AGCAGATTAAAGTCAAT
* * *
14833344 AGATCTTACCTCTCTAACGTTGCAGTAGAGCAGAT
1 A-ATCTTATCTCCCTAAAGTTGCAGT-GAGCAGAT
14833379 CGCATCAAGT
Statistics
Matches: 64, Mismatches: 11, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
43 4 0.06
44 59 0.92
45 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (43 bp):
AATCTTATCTCCCTAAAGTTGCAGTGAGCAGATTAAAGTCAAT
Found at i:14836505 original size:33 final size:32
Alignment explanation
Indices: 14836468--14836531 Score: 76
Period size: 33 Copynumber: 2.0 Consensus size: 32
14836458 ATTGTCCAAA
*
14836468 TACATACTC-TTAATAAAATACTTAAATTTCAAC
1 TACATACTCATT-ATAAAA-ACTTAAAGTTCAAC
* *
14836501 TACATATTCATTATATAAACTTAAAGTTCAA
1 TACATACTCATTATAAAAACTTAAAGTTCAA
14836532 ATTCTACTGA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
32 12 0.44
33 13 0.48
34 2 0.07
ACGTcount: A:0.45, C:0.16, G:0.02, T:0.38
Consensus pattern (32 bp):
TACATACTCATTATAAAAACTTAAAGTTCAAC
Found at i:14839078 original size:19 final size:19
Alignment explanation
Indices: 14839056--14839098 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
14839046 TCCACCCCCA
* **
14839056 CCTCTTCTTTTCTTTTTCT
1 CCTCTTCTTTACGGTTTCT
*
14839075 CCTCATCTTTACGGTTTCT
1 CCTCTTCTTTACGGTTTCT
14839094 CCTCT
1 CCTCT
14839099 AGTCAAGTCT
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.05, C:0.35, G:0.05, T:0.56
Consensus pattern (19 bp):
CCTCTTCTTTACGGTTTCT
Found at i:14839632 original size:27 final size:27
Alignment explanation
Indices: 14839601--14840080 Score: 569
Period size: 27 Copynumber: 17.9 Consensus size: 27
14839591 GCAAATGATA
*
14839601 GAAATACCCCCGATGGGTAAAATGACC
1 GAAATACCCTCGATGGGTAAAATGACC
* * *
14839628 AAAATACCTTCGATGGCTAAAATGACC
1 GAAATACCCTCGATGGGTAAAATGACC
* *
14839655 GAAGTACCCTCGATGGGTAAAATGACA
1 GAAATACCCTCGATGGGTAAAATGACC
* *
14839682 GAAGTACCCTCGATGGGTAAAATGACT
1 GAAATACCCTCGATGGGTAAAATGACC
* *
14839709 GAAATACCCTCAATGGGTAAAATGATC
1 GAAATACCCTCGATGGGTAAAATGACC
* * * *
14839736 GAAACACCCTCAATGGATAAAATGATC
1 GAAATACCCTCGATGGGTAAAATGACC
*
14839763 GAAATACCCTCGATGGGTAAAACGACC
1 GAAATACCCTCGATGGGTAAAATGACC
14839790 -ACAATACCCTCGATGGGTAAAATGACC
1 GA-AATACCCTCGATGGGTAAAATGACC
* * *
14839817 AAAATACCCCCGATGGGTAAAATGATC
1 GAAATACCCTCGATGGGTAAAATGACC
*
14839844 GAAATACCC-CTAATGGGTAAAATGACC
1 GAAATACCCTC-GATGGGTAAAATGACC
* *
14839871 AAAATACCCTCGATGGGTAAAATAACC
1 GAAATACCCTCGATGGGTAAAATGACC
*
14839898 GAAATACCCTCGATGGGTAAAATGATC
1 GAAATACCCTCGATGGGTAAAATGACC
* *
14839925 GAAATACCC-CTAATGGGTAAAATGACT
1 GAAATACCCTC-GATGGGTAAAATGACC
* * *
14839952 AAAATACCCTCGATGGGTAAAATAACT
1 GAAATACCCTCGATGGGTAAAATGACC
*
14839979 GAAATATCCC-CGATGGGTAAAAT-AAC
1 GAAATA-CCCTCGATGGGTAAAATGACC
* * *
14840005 GAAATACCCCCGATGAGTAAAATAACC
1 GAAATACCCTCGATGGGTAAAATGACC
*
14840032 GAAATACCCTCGAAGGGTAAAATGACC
1 GAAATACCCTCGATGGGTAAAATGACC
*
14840059 AAAATACCCT--ATAGGGTAAAAT
1 GAAATACCCTCGAT-GGGTAAAAT
14840081 TATTGTTATA
Statistics
Matches: 393, Mismatches: 50, Indels: 21
0.85 0.11 0.05
Matches are distributed among these distances:
25 4 0.01
26 31 0.08
27 352 0.90
28 6 0.02
ACGTcount: A:0.41, C:0.21, G:0.19, T:0.19
Consensus pattern (27 bp):
GAAATACCCTCGATGGGTAAAATGACC
Found at i:14840280 original size:27 final size:26
Alignment explanation
Indices: 14840247--14840306 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
14840237 TGTACTAGTG
*
14840247 GCTTTGCCACATATACAGTTAGTGGCA
1 GCTTTGCCACAT-TACAGTTACTGGCA
** *
14840274 GCTTTGCTGCATTACTGTTACTGGCA
1 GCTTTGCCACATTACAGTTACTGGCA
14840300 GCTTTGC
1 GCTTTGC
14840307 TGCGTCATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 19 0.66
27 10 0.34
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (26 bp):
GCTTTGCCACATTACAGTTACTGGCA
Found at i:14840298 original size:26 final size:26
Alignment explanation
Indices: 14840264--14840336 Score: 92
Period size: 26 Copynumber: 2.8 Consensus size: 26
14840254 CACATATACA
* *
14840264 GTTAGTGGCAGCTTTGCTGCATTACT
1 GTTACTGGCAGCTTTGCTGCATCACT
* *
14840290 GTTACTGGCAGCTTTGCTGCGTCATT
1 GTTACTGGCAGCTTTGCTGCATCACT
* *
14840316 ATTACTGGCAACTTTGCTGCA
1 GTTACTGGCAGCTTTGCTGCA
14840337 ATATTGGTGT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.16, C:0.22, G:0.25, T:0.37
Consensus pattern (26 bp):
GTTACTGGCAGCTTTGCTGCATCACT
Found at i:14840489 original size:28 final size:27
Alignment explanation
Indices: 14840449--14840507 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 27
14840439 TGTATTGATA
*
14840449 ACTGTATTGGGCTAAGGCCCACACTGTT
1 ACTGTAATGGGCTAAGGCCCACACTG-T
14840477 ACTGTAATGGGCTAAGGCCCACACTGT
1 ACTGTAATGGGCTAAGGCCCACACTGT
14840504 ACTG
1 ACTG
14840508 ATACTATATA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 5 0.17
28 25 0.83
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.25
Consensus pattern (27 bp):
ACTGTAATGGGCTAAGGCCCACACTGT
Found at i:14845744 original size:18 final size:18
Alignment explanation
Indices: 14845710--14845744 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
14845700 TAAGTCAGTT
14845710 TCATTTATGAAATCATTC
1 TCATTTATGAAATCATTC
14845728 TCATTGTATGAAA-CATT
1 TCATT-TATGAAATCATT
14845745 ATAAAAGTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.34, C:0.14, G:0.09, T:0.43
Consensus pattern (18 bp):
TCATTTATGAAATCATTC
Found at i:14847809 original size:12 final size:12
Alignment explanation
Indices: 14847792--14847821 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
14847782 TTAGGTAGTT
14847792 ACACGGCCTAGC
1 ACACGGCCTAGC
*
14847804 ACACGGCCTGGC
1 ACACGGCCTAGC
14847816 ACACGG
1 ACACGG
14847822 GCATGTAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.40, G:0.30, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:14848952 original size:299 final size:298
Alignment explanation
Indices: 14848415--14849004 Score: 993
Period size: 299 Copynumber: 2.0 Consensus size: 298
14848405 AAGCCTCCAT
* *
14848415 TCATGGAGCAGTGTCAAGTGGTTCAAGGCCCATATCTGAGGGCCGGAGAGGGGAAGATAAGGAAG
1 TCATGGAGCAGTGTCAAGTGGTTCAAGGCCCATATCTGAGGGCCAGAGAGGGGAAGATAAGAAAG
* *
14848480 CTTTCTTTCAAATTATAAGTGAGTGGTTTACGAAGTTTGTATGAACGAACCCAACGGCTCAACAA
66 CTTTCTTTCAAATGATAAGTGAGTGGTTTACGAAGTTTGTACGAACGAACCCAACGGCTCAACAA
* *
14848545 CCTCCATCCCCACTTGTTCCTCAACCGGTTCCCATTGTCCATAAGGCGTGGAAAAAGTGCGAGCT
131 CCTCCATCCCCACTTGTTCCTCAACCGGTTCCCATTGTCCACAAGGCGTGGAAAAAGTGAGAGCT
*
14848610 AATAAGCAGCCAATCAACAGAATTCACAAATACGGGGCTGAAGAATTTTGAGCTACAGTCGATGA
196 AATAAGCAGCCAATCAACAGAATTCACAAATACGGGGCTGAAGAATATTGAGCTACAGTCGATGA
*
14848675 TGATCCTGAGAGAGCTAAATTTTGGTTAGAGCACTAAA
261 TGATCCTAAGAGAGCTAAATTTTGGTTAGAGCACTAAA
* *
14848713 TCATGGAGCAGTGTCAAGTGGTTCGAGG-CCAGTATCTGAGGGTCAGAGAGGGGAAGATAAGAAA
1 TCATGGAGCAGTGTCAAGTGGTTCAAGGCCCA-TATCTGAGGGCCAGAGAGGGGAAGATAAGAAA
* *
14848777 GCTTTTGTTTCAAATGATAAGTGAGTGGTTTACGAAGTTTGTACGAACGAACCCAATGGCTCAAC
65 GC-TTTCTTTCAAATGATAAGTGAGTGGTTTACGAAGTTTGTACGAACGAACCCAACGGCTCAAC
* *
14848842 AACCTCCATCCCCACTTGTTCCTCAACCGGTTCCCGTTGTCCACAAGGCGTGGAAATAGTGAGAG
129 AACCTCCATCCCCACTTGTTCCTCAACCGGTTCCCATTGTCCACAAGGCGTGGAAAAAGTGAGAG
* * * *
14848907 CTAATAAGCCGCCACTCAACAGATTTCACAAATATGGGGCTGAAGAATATTGAGCTACAGTCGAT
194 CTAATAAGCAGCCAATCAACAGAATTCACAAATACGGGGCTGAAGAATATTGAGCTACAGTCGAT
14848972 GATGATCCTAAGAGAGCTAAATTTTGGTTAGAG
259 GATGATCCTAAGAGAGCTAAATTTTGGTTAGAG
14849005 AATACTATTC
Statistics
Matches: 272, Mismatches: 18, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
297 3 0.01
298 58 0.21
299 211 0.78
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (298 bp):
TCATGGAGCAGTGTCAAGTGGTTCAAGGCCCATATCTGAGGGCCAGAGAGGGGAAGATAAGAAAG
CTTTCTTTCAAATGATAAGTGAGTGGTTTACGAAGTTTGTACGAACGAACCCAACGGCTCAACAA
CCTCCATCCCCACTTGTTCCTCAACCGGTTCCCATTGTCCACAAGGCGTGGAAAAAGTGAGAGCT
AATAAGCAGCCAATCAACAGAATTCACAAATACGGGGCTGAAGAATATTGAGCTACAGTCGATGA
TGATCCTAAGAGAGCTAAATTTTGGTTAGAGCACTAAA
Done.