Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43060996
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2186021 characters in sequence are not A, C, G, or T
File 47 of 128
Found at i:14852314 original size:29 final size:29
Alignment explanation
Indices: 14852279--14852346 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
14852269 ATCAACGAAT
*
14852279 GAAAAGGGATAGCTTTAGCTATCGAATAC
1 GAAAAGGGATAGCTTCAGCTATCGAATAC
* * * *
14852308 GGAAAGGGATATCTTCAGCTATCGATTAT
1 GAAAAGGGATAGCTTCAGCTATCGAATAC
14852337 GAAAAGGGAT
1 GAAAAGGGAT
14852347 GGTGACGACC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.37, C:0.12, G:0.26, T:0.25
Consensus pattern (29 bp):
GAAAAGGGATAGCTTCAGCTATCGAATAC
Found at i:14852367 original size:29 final size:29
Alignment explanation
Indices: 14852335--14852406 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
14852325 GCTATCGATT
*
14852335 ATGAAAAGGGATGGTGACGACCGTCAATA-
1 ATGAAAAGGGATGGTGACGACCATCAA-AC
*
14852364 ATGAAAAGGCATGGTGACGACCATCAAAC
1 ATGAAAAGGGATGGTGACGACCATCAAAC
14852393 TATG-AAAGGGATGG
1 -ATGAAAAGGGATGG
14852407 CTTCGGCTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 1 0.03
29 34 0.89
30 3 0.08
ACGTcount: A:0.39, C:0.14, G:0.31, T:0.17
Consensus pattern (29 bp):
ATGAAAAGGGATGGTGACGACCATCAAAC
Found at i:14852482 original size:30 final size:30
Alignment explanation
Indices: 14852332--14852524 Score: 164
Period size: 30 Copynumber: 6.5 Consensus size: 30
14852322 TCAGCTATCG
* *
14852332 ATTATGAAAAGGGATGGTGACGACCGTC-A
1 ATTATGAAAAGGGATGCTGACGACCATCAA
* * *
14852361 ATAATGAAAAGGCATGGTGACGACCATCAA
1 ATTATGAAAAGGGATGCTGACGACCATCAA
* * * * *
14852391 ACTATG-AAAGGGATGGCT-TCGGCTATCGA
1 ATTATGAAAAGGGAT-GCTGACGACCATCAA
* * * *
14852420 TTTATGAAAAAGGATAGCT-TC-AGCTAAT-AA
1 ATTATGAAAAGGGAT-GCTGACGA-C-CATCAA
*
14852450 ATTATGAAAAGGGATTCTGACGACCATCAA
1 ATTATGAAAAGGGATGCTGACGACCATCAA
*
14852480 ATTATGAAAAGGGATGCTGACGACTATCAA
1 ATTATGAAAAGGGATGCTGACGACCATCAA
14852510 ATTATGAAAAGGGAT
1 ATTATGAAAAGGGAT
14852525 AACTTTGGTT
Statistics
Matches: 131, Mismatches: 25, Indels: 15
0.77 0.15 0.09
Matches are distributed among these distances:
29 47 0.36
30 81 0.62
31 3 0.02
ACGTcount: A:0.39, C:0.13, G:0.24, T:0.23
Consensus pattern (30 bp):
ATTATGAAAAGGGATGCTGACGACCATCAA
Found at i:14852554 original size:90 final size:89
Alignment explanation
Indices: 14852364--14852529 Score: 217
Period size: 90 Copynumber: 1.9 Consensus size: 89
14852354 ACCGTCAATA
* * * * * *
14852364 ATGAAAAGGCATGGTGACGACCATCAAACTATGAAAGGGATGGCTTCGGCTATCGATTTATGAAA
1 ATGAAAAGGGATGCTGACGACCATCAAACTATGAAAGGGATGGCTACGACTATCAAATTATGAAA
*
14852429 AAGGATAGCTTCAGCTAATAAATT
66 AAGGATAACTTCAGCTAATAAATT
* *
14852453 ATGAAAAGGGATTCTGACGACCATCAAATTATGAAAAGGGAT-GCTGACGACTATCAAATTATGA
1 ATGAAAAGGGATGCTGACGACCATCAAACTATG-AAAGGGATGGCT-ACGACTATCAAATTATGA
*
14852517 AAAGGGATAACTT
64 AAAAGGATAACTT
14852530 TGGTTATTGA
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
89 32 0.49
90 33 0.51
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.24
Consensus pattern (89 bp):
ATGAAAAGGGATGCTGACGACCATCAAACTATGAAAGGGATGGCTACGACTATCAAATTATGAAA
AAGGATAACTTCAGCTAATAAATT
Found at i:14856517 original size:21 final size:20
Alignment explanation
Indices: 14856491--14856554 Score: 66
Period size: 18 Copynumber: 3.4 Consensus size: 20
14856481 TCAATTTCAG
14856491 CAACTTCCTATTCTTTAGCAA
1 CAACTTCCT-TTCTTTAGCAA
*
14856512 CAACTT-C-TTCTTCAGCAA
1 CAACTTCCTTTCTTTAGCAA
14856530 CAACTTCC--TCTTCT-GCAA
1 CAACTTCCTTTCTT-TAGCAA
14856548 CAACTTC
1 CAACTTC
14856555 TGCTTTTGCA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
18 31 0.79
19 1 0.03
20 1 0.03
21 6 0.15
ACGTcount: A:0.27, C:0.34, G:0.05, T:0.34
Consensus pattern (20 bp):
CAACTTCCTTTCTTTAGCAA
Found at i:14856522 original size:18 final size:18
Alignment explanation
Indices: 14856501--14856560 Score: 77
Period size: 18 Copynumber: 3.3 Consensus size: 18
14856491 CAACTTCCTA
14856501 TTCTTTAGCAACAACTTC
1 TTCTTTAGCAACAACTTC
*
14856519 TTCTTCAGCAACAACTTC
1 TTCTTTAGCAACAACTTC
*
14856537 CTCTTCT-GCAACAACTTC
1 TTCTT-TAGCAACAACTTC
*
14856555 TGCTTT
1 TTCTTT
14856561 TGCAGCATCA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
17 1 0.03
18 35 0.97
ACGTcount: A:0.23, C:0.32, G:0.07, T:0.38
Consensus pattern (18 bp):
TTCTTTAGCAACAACTTC
Found at i:14856585 original size:36 final size:35
Alignment explanation
Indices: 14856508--14856586 Score: 90
Period size: 36 Copynumber: 2.2 Consensus size: 35
14856498 CTATTCTTTA
14856508 GCAACAACTTCTTCTTCAGCAACAACTTCCTCTTCT
1 GCAACAACTTCTTCTTCAGCAACAACTT-CTCTTCT
* *
14856544 GCAACAACTTCTGCTTTTGCAGCATCAACTT-TCTTCT
1 GCAACAACTTCT--TCTT-CAGCAACAACTTCTCTTCT
14856581 -CAACAA
1 GCAACAA
14856587 TAGTGTCTTC
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
36 18 0.47
37 6 0.16
38 3 0.08
39 11 0.29
ACGTcount: A:0.27, C:0.33, G:0.08, T:0.33
Consensus pattern (35 bp):
GCAACAACTTCTTCTTCAGCAACAACTTCTCTTCT
Found at i:14860442 original size:51 final size:50
Alignment explanation
Indices: 14860366--14860559 Score: 187
Period size: 51 Copynumber: 3.8 Consensus size: 50
14860356 TATAAACACG
*
14860366 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-AATAGATAATGGTCACA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAA-AGAT-ATGGTCACA
* * * * *
14860417 TGTGTAGTACTATGTGCAGACTACTATGTGTATCGGAAGGCTTTGGTCA-A
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTATC-GAAAGATATGGTCACA
* * * * * *
14860467 GTGTGTAGTACTATGTGCAGGCTACTACGTG-AACCAAAAAGTTTGATCACG
1 -TGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAAAGA-TATGGTCACA
* * *
14860518 TGTGTAGTACTATGTGAAGGCTACAACGTGTATCGAATGATA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAAAGATA
14860560 ATAATTACAC
Statistics
Matches: 115, Mismatches: 22, Indels: 13
0.77 0.15 0.09
Matches are distributed among these distances:
49 2 0.02
50 39 0.34
51 70 0.61
52 2 0.02
53 2 0.02
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAAAGATATGGTCACA
Found at i:14866580 original size:296 final size:296
Alignment explanation
Indices: 14866057--14866637 Score: 921
Period size: 296 Copynumber: 2.0 Consensus size: 296
14866047 CTTGATTGGT
* *
14866057 TGTTTAACGTCACAACAATAATGTGCAAGCATATACTGTCAGTGCAAGTATAGTAGGCAGATGTG
1 TGTTTAACGTCACAACAAAAATGTGCAAGCATACACTGTCAGTGCAAGTATAGTAGGCAGATGTG
*
14866122 AGTTTGTCAGATATCGATCCCACAGAGATGGGAATCTTTTGTCTATTAATGTCGATGCAATAACT
66 AGTTTGTCAGATAACGATCCCACAGAGATGGGAATCTTTTGTCTATTAATGTCGATGCAATAACT
* *
14866187 TGATAATAACGATATAAATTGCGACAATAGTTGTCGATGTAATAACTTGAGAACAATAAAATAAA
131 TGATAATAACGATATAAATTGCGACAATAGTTGTCGATGCAATAACCTGAGAACAATAAAATAAA
* * * *
14866252 ATATGATAATGATAAACCGGAATTCCCAACATGAATCTTCAGTAGAATACTAAGTGCTTATGAGG
196 ATATGATAATGATAAACCGGAATCCCCAACATGAATCTTCAGCAGAATACTAAGTGCTCACGAGG
14866317 TATAAAAGTATAGGTGATTGTCGATACTTGATCAGC
261 TATAAAAGTATAGGTGATTGTCGATACTTGATCAGC
** * *
14866353 TGTTTAACGTCACAGTAAAAATGTGCAAGCGTACACTGTCAGTGCAAGTATAGTAGGTAGATGTG
1 TGTTTAACGTCACAACAAAAATGTGCAAGCATACACTGTCAGTGCAAGTATAGTAGGCAGATGTG
* **
14866418 AGTTTGTC-GAATAACGATCCCACAGGGATGGGTGTCTTTTGTCTATTAATGTCGATGCAATAAC
66 AGTTTGTCAG-ATAACGATCCCACAGAGATGGGAATCTTTTGTCTATTAATGTCGATGCAATAAC
* * ** * *
14866482 TTGATAGTAACGATATAAATTGTGAGGATAGTTGTTGATGCAATAACCTGAGAAGAATAAAATAA
130 TTGATAATAACGATATAAATTGCGACAATAGTTGTCGATGCAATAACCTGAGAACAATAAAATAA
** *
14866547 AATATGATAATGATAAATTGGGATCCCCAACATGAATCTTCAGCAGAATACTAAGTGCTCACGAG
195 AATATGATAATGATAAACCGGAATCCCCAACATGAATCTTCAGCAGAATACTAAGTGCTCACGAG
14866612 GTATAAAAGTATAGGTGATTGTCGAT
260 GTATAAAAGTATAGGTGATTGTCGAT
14866638 GCAATAAAAT
Statistics
Matches: 259, Mismatches: 25, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
295 1 0.00
296 258 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.29
Consensus pattern (296 bp):
TGTTTAACGTCACAACAAAAATGTGCAAGCATACACTGTCAGTGCAAGTATAGTAGGCAGATGTG
AGTTTGTCAGATAACGATCCCACAGAGATGGGAATCTTTTGTCTATTAATGTCGATGCAATAACT
TGATAATAACGATATAAATTGCGACAATAGTTGTCGATGCAATAACCTGAGAACAATAAAATAAA
ATATGATAATGATAAACCGGAATCCCCAACATGAATCTTCAGCAGAATACTAAGTGCTCACGAGG
TATAAAAGTATAGGTGATTGTCGATACTTGATCAGC
Found at i:14875643 original size:42 final size:43
Alignment explanation
Indices: 14875505--14875666 Score: 118
Period size: 42 Copynumber: 3.8 Consensus size: 43
14875495 AGCTCGTACA
** * * * *
14875505 ATGCCAACGTCTTAGACTTGATCTTACATGTAATCACATAT-CG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAA-CACAAATACG
* * * *
14875548 ATGCC-ACTATCCTAGATAGGGTCTTACACG-AA-ACAAATACG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAACACAAATACG
* * * *
14875589 ATGTCAATGTCCCAGACATGGTTTTACACGTAACACAAGT-CG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAACACAAATACG
**
14875631 ATGCCAACGTCCCAGATGTGGTCTTACACGATAACA
1 ATGCCAACGTCCCAGACATGGTCTTACACG-TAACA
14875667 TATATCAGAA
Statistics
Matches: 92, Mismatches: 21, Indels: 12
0.74 0.17 0.10
Matches are distributed among these distances:
40 5 0.05
41 23 0.25
42 34 0.37
43 30 0.33
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAACACAAATACG
Found at i:14875872 original size:26 final size:26
Alignment explanation
Indices: 14875836--14875927 Score: 78
Period size: 26 Copynumber: 3.4 Consensus size: 26
14875826 TCACCATGTA
14875836 ACATTTATATATTATCAAATTTAATG
1 ACATTTATATATTATCAAATTTAATG
** * *
14875862 ACATTTATATAAAATTC-CATTCATCATG
1 ACATTTATATATTA-TCAAATT--TAATG
* *
14875890 TAACATTGATATATTATCAAATTTAACG
1 --ACATTTATATATTATCAAATTTAATG
14875918 ACATTTATAT
1 ACATTTATAT
14875928 GCTTATAGAC
Statistics
Matches: 49, Mismatches: 11, Indels: 12
0.68 0.15 0.17
Matches are distributed among these distances:
26 24 0.49
27 2 0.04
28 7 0.14
29 2 0.04
30 14 0.29
ACGTcount: A:0.41, C:0.12, G:0.04, T:0.42
Consensus pattern (26 bp):
ACATTTATATATTATCAAATTTAATG
Found at i:14875896 original size:30 final size:30
Alignment explanation
Indices: 14875816--14875902 Score: 76
Period size: 26 Copynumber: 3.0 Consensus size: 30
14875806 TATATTCACA
*
14875816 AAAATTCCATTCACCATGTAACATTTATAT
1 AAAATTCCATTCATCATGTAACATTTATAT
** * *
14875846 ATTA-TCAAATT--TAATG--ACATTTATAT
1 AAAATTC-CATTCATCATGTAACATTTATAT
*
14875872 AAAATTCCATTCATCATGTAACATTGATAT
1 AAAATTCCATTCATCATGTAACATTTATAT
14875902 A
1 A
14875903 TTATCAAATT
Statistics
Matches: 41, Mismatches: 10, Indels: 12
0.65 0.16 0.19
Matches are distributed among these distances:
26 15 0.37
27 2 0.05
28 7 0.17
29 2 0.05
30 15 0.37
ACGTcount: A:0.41, C:0.15, G:0.05, T:0.39
Consensus pattern (30 bp):
AAAATTCCATTCATCATGTAACATTTATAT
Found at i:14875902 original size:56 final size:56
Alignment explanation
Indices: 14875816--14875927 Score: 197
Period size: 56 Copynumber: 2.0 Consensus size: 56
14875806 TATATTCACA
* *
14875816 AAAATTCCATTCACCATGTAACATTTATATATTATCAAATTTAATGACATTTATAT
1 AAAATTCCATTCACCATGTAACATTGATATATTATCAAATTTAACGACATTTATAT
*
14875872 AAAATTCCATTCATCATGTAACATTGATATATTATCAAATTTAACGACATTTATAT
1 AAAATTCCATTCACCATGTAACATTGATATATTATCAAATTTAACGACATTTATAT
14875928 GCTTATAGAC
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.41, C:0.14, G:0.04, T:0.40
Consensus pattern (56 bp):
AAAATTCCATTCACCATGTAACATTGATATATTATCAAATTTAACGACATTTATAT
Found at i:14879924 original size:42 final size:40
Alignment explanation
Indices: 14879774--14879937 Score: 127
Period size: 42 Copynumber: 3.9 Consensus size: 40
14879764 GAAGCTCGTA
* *
14879774 CAATGCCAACGTCCTGGACGTGGTCTTACATGTAATCACATAT
1 CAATGCCAACGTCC-AGACGTGGTCTTACACGTAA-CACA-AT
** *
14879817 TGATGCC-ACTGTTCCAGACAG-GGTCTTACACGAAACA-AAT
1 CAATGCCAAC-G-TCCAGAC-GTGGTCTTACACGTAACACAAT
* * **
14879857 ACAATGCCAATGTCCCAAAAATGGTCTTACACGTAACACAAGT
1 -CAATGCCAACGT-CCAGACGTGGTCTTACACGTAACACAA-T
14879900 CAATGCCAACGTACCAGACGTGGTCTTACACGATAACA
1 CAATGCCAACGT-CCAGACGTGGTCTTACACG-TAACA
14879938 TATATTAGAA
Statistics
Matches: 94, Mismatches: 17, Indels: 20
0.72 0.13 0.15
Matches are distributed among these distances:
40 3 0.03
41 26 0.28
42 34 0.36
43 27 0.29
44 4 0.04
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.23
Consensus pattern (40 bp):
CAATGCCAACGTCCAGACGTGGTCTTACACGTAACACAAT
Found at i:14884911 original size:27 final size:27
Alignment explanation
Indices: 14884870--14885105 Score: 207
Period size: 27 Copynumber: 8.7 Consensus size: 27
14884860 CAGAAAGGTT
*
14884870 GTAAAATTAGT-GAAATACCCTCGACAG
1 GTAAAATTA-TCGAAATACCCTCGATAG
* *
14884897 GTAAAATTATCGAAACACCCCCGA-AGG
1 GTAAAATTATCGAAATACCCTCGATA-G
* * *
14884924 GTAAAATTACCGAAATACCCTTGATGG
1 GTAAAATTATCGAAATACCCTCGATAG
* *
14884951 GTAAAATTACCAAAATACCCTCGATAG
1 GTAAAATTATCGAAATACCCTCGATAG
*
14884978 GTTAAATTATCGAAATACCC-CTGA-AG
1 GTAAAATTATCGAAATACCCTC-GATAG
* *
14885004 TGTAAAATTATCAAAATAACCC-C-AAAGG
1 -GTAAAATTATCGAAAT-ACCCTCGATA-G
** * * *
14885032 GTAAAGCTATCGAAATTCCCTTGAAAG
1 GTAAAATTATCGAAATACCCTCGATAG
*
14885059 GTAAAATTA-CTGAAATACCCTCGATGG
1 GTAAAATTATC-GAAATACCCTCGATAG
14885086 GTAAAATTATCGAAATACCC
1 GTAAAATTATCGAAATACCC
14885106 CCGTAAGGTA
Statistics
Matches: 171, Mismatches: 26, Indels: 24
0.77 0.12 0.11
Matches are distributed among these distances:
26 10 0.06
27 151 0.88
28 10 0.06
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.23
Consensus pattern (27 bp):
GTAAAATTATCGAAATACCCTCGATAG
Found at i:14885034 original size:81 final size:81
Alignment explanation
Indices: 14884882--14885107 Score: 233
Period size: 81 Copynumber: 2.8 Consensus size: 81
14884872 AAAATTAGTG
* * * * *
14884882 AAATACCCTCGACAGGTAAAATTATCGAAACACCCCCGAAGGGTAAAATTACCGAAAT-ACCCTT
1 AAATACCCTCGAAAGGTAAAATTATCGAAATACCCCTGAAGGGTAAAATTATCGAAATAACCC-C
* * *
14884946 GATGGGTAAAATTACCA
65 AAAGGGTAAAACTACCA
* * * *
14884963 AAATACCCTCGATAGGTTAAATTATCGAAATACCCCTGAAGTGTAAAATTATCAAAATAACCCCA
1 AAATACCCTCGAAAGGTAAAATTATCGAAATACCCCTGAAGGGTAAAATTATCGAAATAACCCCA
* * *
14885028 AAGGGTAAAGCTATCG
66 AAGGGTAAAACTACCA
* * * *
14885044 AAATTCCCTTGAAAGGTAAAATTA-CTGAAATA-CCCTCGATGGGTAAAATTATCGAAATACCCC
1 AAATACCCTCGAAAGGTAAAATTATC-GAAATACCCCT-GAAGGGTAAAATTATCGAAATAACCC
14885107 C
64 C
14885108 GTAAGGTACA
Statistics
Matches: 120, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
80 5 0.04
81 111 0.93
82 4 0.03
ACGTcount: A:0.41, C:0.22, G:0.15, T:0.23
Consensus pattern (81 bp):
AAATACCCTCGAAAGGTAAAATTATCGAAATACCCCTGAAGGGTAAAATTATCGAAATAACCCCA
AAGGGTAAAACTACCA
Found at i:14886171 original size:16 final size:17
Alignment explanation
Indices: 14886139--14886171 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
14886129 TTTCAAGAAG
14886139 GGTTTTCAATGAAAACAT
1 GGTTTTCAA-GAAAACAT
14886157 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
14886172 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAT
Found at i:14886506 original size:21 final size:21
Alignment explanation
Indices: 14886482--14886529 Score: 66
Period size: 19 Copynumber: 2.4 Consensus size: 21
14886472 TATTTCATTC
14886482 ATTAAAACATATCATATATAT
1 ATTAAAACATATCATATATAT
*
14886503 ATT-AAA-GTATCATATATAT
1 ATTAAAACATATCATATATAT
14886522 A-TAAAACA
1 ATTAAAACA
14886530 ACCATCAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
18 1 0.04
19 16 0.70
20 3 0.13
21 3 0.13
ACGTcount: A:0.54, C:0.08, G:0.02, T:0.35
Consensus pattern (21 bp):
ATTAAAACATATCATATATAT
Found at i:14891746 original size:110 final size:110
Alignment explanation
Indices: 14891617--14891845 Score: 433
Period size: 110 Copynumber: 2.1 Consensus size: 110
14891607 ATGAATTATT
14891617 AAATATAATTTTATATTTTATTATTTAATTTAATTATGTATGACCCACTTTATGTCATAAAAAAT
1 AAATATAA-TTTATATTTTATTATTTAATTTAATTATGTATGACCCACTTTATGTCATAAAAAAT
14891682 AATATATTCAAATTAATATAAAATAAGCCATTTATTGCATGAAAAC
65 AATATATTCAAATTAATATAAAATAAGCCATTTATTGCATGAAAAC
14891728 AAATATAATTTATATTTTATTATTTAATTTAATTATGTATGACCCACTTTATGTCATAAAAAATA
1 AAATATAATTTATATTTTATTATTTAATTTAATTATGTATGACCCACTTTATGTCATAAAAAATA
14891793 ATATATTCAAATTAATATAAAATAAGCCATTTATTGCATGAAAAC
66 ATATATTCAAATTAATATAAAATAAGCCATTTATTGCATGAAAAC
*
14891838 -TATATAAT
1 AAATATAAT
14891846 AAAGCATAAA
Statistics
Matches: 117, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
109 7 0.06
110 102 0.87
111 8 0.07
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.41
Consensus pattern (110 bp):
AAATATAATTTATATTTTATTATTTAATTTAATTATGTATGACCCACTTTATGTCATAAAAAATA
ATATATTCAAATTAATATAAAATAAGCCATTTATTGCATGAAAAC
Found at i:14910216 original size:27 final size:27
Alignment explanation
Indices: 14910184--14910239 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
14910174 TAAATGGTTC
* * *
14910184 AACGAGTATGAAAAGGGAAGGAATGGT
1 AACGAGAATGAAAAGGGAAAGAACGGT
14910211 AACGAGAATGAAAAGGGAAAGAACGGT
1 AACGAGAATGAAAAGGGAAAGAACGGT
14910238 AA
1 AA
14910240 GTATTCATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.50, C:0.05, G:0.34, T:0.11
Consensus pattern (27 bp):
AACGAGAATGAAAAGGGAAAGAACGGT
Found at i:14921549 original size:20 final size:20
Alignment explanation
Indices: 14921506--14921553 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
14921496 TCGGTCTACA
* *
14921506 GTGCCCCTGTTTGCACATTT
1 GTGCTCCTGTTTGCACATTG
14921526 GTGCTCCTGTTTGCAC-TCTG
1 GTGCTCCTGTTTGCACAT-TG
14921546 GTGCTCCT
1 GTGCTCCT
14921554 ATTATGCATC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 1 0.04
20 24 0.96
ACGTcount: A:0.06, C:0.31, G:0.23, T:0.40
Consensus pattern (20 bp):
GTGCTCCTGTTTGCACATTG
Found at i:14927385 original size:20 final size:20
Alignment explanation
Indices: 14927360--14927421 Score: 97
Period size: 20 Copynumber: 3.1 Consensus size: 20
14927350 TTGTACGGGA
14927360 TTTTCACTTTGGTGCCCCTG
1 TTTTCACTTTGGTGCCCCTG
14927380 TTTTCACTTTGGTGCCCCTG
1 TTTTCACTTTGGTGCCCCTG
* * *
14927400 TATACACTTTGGTGTCCCTG
1 TTTTCACTTTGGTGCCCCTG
14927420 TT
1 TT
14927422 CGCACTACGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.08, C:0.27, G:0.19, T:0.45
Consensus pattern (20 bp):
TTTTCACTTTGGTGCCCCTG
Found at i:14929103 original size:34 final size:33
Alignment explanation
Indices: 14929036--14929123 Score: 117
Period size: 34 Copynumber: 2.6 Consensus size: 33
14929026 GTATATTTTT
14929036 TATATATTGCCGAATTGA-TT-TATATGTAGATA
1 TATATATTG-CGAATTGATTTGTATATGTAGATA
* *
14929068 TATACATTGTCGAATTGATTTGTATATGTATATA
1 TATATATTG-CGAATTGATTTGTATATGTAGATA
14929102 TATATATTGCTGAATTGATTTG
1 TATATATTGC-GAATTGATTTG
14929124 AGATTCCGTA
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
32 16 0.33
33 3 0.06
34 30 0.61
ACGTcount: A:0.32, C:0.06, G:0.16, T:0.47
Consensus pattern (33 bp):
TATATATTGCGAATTGATTTGTATATGTAGATA
Found at i:14929215 original size:92 final size:90
Alignment explanation
Indices: 14929118--14929343 Score: 294
Period size: 92 Copynumber: 2.5 Consensus size: 90
14929108 TTGCTGAATT
*
14929118 GATTTGAGATTCCGTATAAGACCATACCTGAGATATGGCATTGGCATCGATTTGAGATCCCGTAT
1 GATTTGAGATTCCGTATAAGACCATACCTGAGATATGGCATCGGCATCGATTTGAGATCCCGTAT
* *
14929183 AAGATCATATATTGGATATGGCATCAC
66 AAGACCATATATGGGATATGGCAT--C
* * *
14929210 GATTTGAGATCCCGTATAAGACCATATCT-AGGATATGACATCGGCATCGATTTGAGATCCCGTA
1 GATTTGAGATTCCGTATAAGACCATACCTGA-GATATGGCATCGGCATCGATTTGAGATCCCGTA
*
14929274 TAAGACCATATCTGGGATATGGCATC
65 TAAGACCATATATGGGATATGGCATC
* * * *
14929300 GATATGAGACTT-CGTCTAAGACCATAGCTGAGCTATTGGCATCG
1 GATTTGAGA-TTCCGTATAAGACCATACCTGAGATA-TGGCATCG
14929344 ATATGAGATT
Statistics
Matches: 117, Mismatches: 13, Indels: 9
0.84 0.09 0.06
Matches are distributed among these distances:
90 27 0.23
91 10 0.09
92 80 0.68
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29
Consensus pattern (90 bp):
GATTTGAGATTCCGTATAAGACCATACCTGAGATATGGCATCGGCATCGATTTGAGATCCCGTAT
AAGACCATATATGGGATATGGCATC
Found at i:14929300 original size:48 final size:48
Alignment explanation
Indices: 14929118--14929300 Score: 257
Period size: 48 Copynumber: 3.9 Consensus size: 48
14929108 TTGCTGAATT
* * * *
14929118 GATTTGAGATTCCGTATAAGACCATACCTGAGATATGGCATTGGCATC
1 GATTTGAGATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATC
* * *
14929166 GATTTGAGATCCCGTATAAGATCATATATTGGATATGGCAT---CA-C
1 GATTTGAGATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATC
* *
14929210 GATTTGAGATCCCGTATAAGACCATATCTAGGATATGACATCGGCATC
1 GATTTGAGATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATC
14929258 GATTTGAGATCCCGTATAAGACCATATCTGGGATATGGCATCG
1 GATTTGAGATCCCGTATAAGACCATATCTGGGATATGGCATCG
14929301 ATATGAGACT
Statistics
Matches: 119, Mismatches: 12, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
44 38 0.32
45 2 0.02
47 2 0.02
48 77 0.65
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (48 bp):
GATTTGAGATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATC
Found at i:14929320 original size:42 final size:43
Alignment explanation
Indices: 14929122--14929369 Score: 173
Period size: 48 Copynumber: 5.5 Consensus size: 43
14929112 TGAATTGATT
* * *
14929122 TGAGATTCCGTATAAGACCATACCTGAGATATGGCATTGGCATCGATT
1 TGAGATCCCGTATAAGACCATAGCTGAG--AT---ATTGGCATCGATA
* ** *
14929170 TGAGATCCCGTATAAGATCATATATTG-GATA-TGGCATCACGATT
1 TGAGATCCCGTATAAGACCATA-GCTGAGATATTGGCAT--CGATA
* *
14929214 TGAGATCCCGTATAAGACCATATCT-AGGATATGACATCGGCATCGATT
1 TGAGATCCCGTATAAGACCATAGCTGA-GATAT----T-GGCATCGATA
* *
14929262 TGAGATCCCGTATAAGACCATATCTGGGATA-TGGCATCGATA
1 TGAGATCCCGTATAAGACCATAGCTGAGATATTGGCATCGATA
* * *
14929304 TGAGA-CTTCGTCTAAGACCATAGCTGAGCTATTGGCATCGATA
1 TGAGATC-CCGTATAAGACCATAGCTGAGATATTGGCATCGATA
* *
14929347 TGAGATTCCCATGTAAGACCATA
1 TGAGA-TCCCGTATAAGACCATA
14929370 TCTAGGACAT
Statistics
Matches: 167, Mismatches: 17, Indels: 36
0.76 0.08 0.16
Matches are distributed among these distances:
41 1 0.01
42 39 0.23
43 19 0.11
44 42 0.25
45 1 0.01
46 2 0.01
48 55 0.33
49 3 0.02
50 5 0.03
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (43 bp):
TGAGATCCCGTATAAGACCATAGCTGAGATATTGGCATCGATA
Found at i:14932886 original size:3 final size:3
Alignment explanation
Indices: 14932878--14932917 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
14932868 CCTACTTATT
14932878 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
14932918 CGAAAGAACG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:14942530 original size:19 final size:20
Alignment explanation
Indices: 14942506--14942552 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
14942496 TTTTTTTCTT
14942506 TTTTTTTTTGCGCTTTTTG-
1 TTTTTTTTTGCGCTTTTTGC
**
14942525 TTTTTTTTTGTTCTTTTTGC
1 TTTTTTTTTGCGCTTTTTGC
14942545 TTTTTTTT
1 TTTTTTTT
14942553 AAAGAATAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 17 0.68
20 8 0.32
ACGTcount: A:0.00, C:0.09, G:0.11, T:0.81
Consensus pattern (20 bp):
TTTTTTTTTGCGCTTTTTGC
Found at i:14943804 original size:4 final size:4
Alignment explanation
Indices: 14943795--14943830 Score: 51
Period size: 4 Copynumber: 9.8 Consensus size: 4
14943785 CGATTTAGTC
14943795 TTTA TTTA TTTA -TTA TTTA -TTA TTTA -TTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
14943831 TTATTAAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
3 9 0.31
4 20 0.69
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:14943810 original size:7 final size:7
Alignment explanation
Indices: 14943795--14943836 Score: 68
Period size: 7 Copynumber: 6.0 Consensus size: 7
14943785 CGATTTAGTC
14943795 TTTATTTA
1 TTTA-TTA
14943803 TTTATTA
1 TTTATTA
14943810 TTTATTA
1 TTTATTA
14943817 TTTATTA
1 TTTATTA
14943824 TTTATT-
1 TTTATTA
14943830 TTTATTA
1 TTTATTA
14943837 AATTATTTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.18
7 23 0.70
8 4 0.12
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTATTA
Found at i:14943841 original size:18 final size:20
Alignment explanation
Indices: 14943800--14943844 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
14943790 TAGTCTTTAT
*
14943800 TTATTTATTATTTATTATTTA
1 TTATTTATTATTTATTA-TAA
14943821 TTATTTATT-TTTATTA-AA
1 TTATTTATTATTTATTATAA
14943839 TTATTT
1 TTATTT
14943845 TAGTGTTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 7 0.30
20 7 0.30
21 9 0.39
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (20 bp):
TTATTTATTATTTATTATAA
Found at i:14943842 original size:14 final size:13
Alignment explanation
Indices: 14943803--14943845 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
14943793 TCTTTATTTA
*
14943803 TTTATTATTTATT
1 TTTATTAATTATT
*
14943816 ATTTATTATTTATT
1 -TTTATTAATTATT
14943830 TTTATTAAATTATT
1 TTTATT-AATTATT
14943844 TT
1 TT
14943846 AGTGTTTTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 6 0.22
14 21 0.78
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTATTAATTATT
Found at i:14947347 original size:9 final size:9
Alignment explanation
Indices: 14947320--14947357 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
14947310 TTAAATCAGA
*
14947320 ATATTTTAT
1 ATATTTAAT
*
14947329 -TATTTTAT
1 ATATTTAAT
14947337 ATATTTAAT
1 ATATTTAAT
14947346 ATATTTAAT
1 ATATTTAAT
14947355 ATA
1 ATA
14947358 AATTTATAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
8 8 0.30
9 19 0.70
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (9 bp):
ATATTTAAT
Found at i:14959116 original size:12 final size:13
Alignment explanation
Indices: 14959092--14959120 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
14959082 GGGTTATAAC
14959092 TATTGCATTTATT
1 TATTGCATTTATT
14959105 TATTGC-TTTATT
1 TATTGCATTTATT
14959117 TATT
1 TATT
14959121 CATGTATGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (13 bp):
TATTGCATTTATT
Found at i:14964866 original size:17 final size:17
Alignment explanation
Indices: 14964846--14964879 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
14964836 TCGATAGCAG
*
14964846 ATCAGATTACTAATTGT
1 ATCAAATTACTAATTGT
*
14964863 ATCAAATTACTCATTGT
1 ATCAAATTACTAATTGT
14964880 CGAGGCATCG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (17 bp):
ATCAAATTACTAATTGT
Found at i:14965156 original size:27 final size:27
Alignment explanation
Indices: 14965126--14965224 Score: 94
Period size: 27 Copynumber: 3.7 Consensus size: 27
14965116 CTTCCAAGCG
*
14965126 ATCTATAAAAAGGAAGCCTTTATGGCA
1 ATCTATGAAAAGGAAGCCTTTATGGCA
* ** *
14965153 ATCTATGAAAGGGAAAACTCTATGGCA
1 ATCTATGAAAAGGAAGCCTTTATGGCA
* *
14965180 ATCTGA-GAAAAGGAATCCTTTA-GGCT
1 ATCT-ATGAAAAGGAAGCCTTTATGGCA
* *
14965206 ACCTATGAAATGGAAGCCT
1 ATCTATGAAAAGGAAGCCT
14965225 ACGTGGCAGA
Statistics
Matches: 57, Mismatches: 13, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
25 1 0.02
26 17 0.30
27 38 0.67
28 1 0.02
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.24
Consensus pattern (27 bp):
ATCTATGAAAAGGAAGCCTTTATGGCA
Found at i:14966725 original size:15 final size:17
Alignment explanation
Indices: 14966705--14966737 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
14966695 TTTTTGTCTC
14966705 AATAAT-AAT-GTTTTA
1 AATAATAAATAGTTTTA
14966720 AATAATAAATAGTTTTA
1 AATAATAAATAGTTTTA
14966737 A
1 A
14966738 GCATCATCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 3 0.19
17 7 0.44
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (17 bp):
AATAATAAATAGTTTTA
Found at i:14984085 original size:25 final size:20
Alignment explanation
Indices: 14984025--14984094 Score: 122
Period size: 20 Copynumber: 3.5 Consensus size: 20
14984015 TGAACCACTC
*
14984025 CATTTACTTACTTACCATTT
1 CATTTACTTACTTTCCATTT
14984045 CATTTACTTACTTTCCATTT
1 CATTTACTTACTTTCCATTT
*
14984065 CATTTACTTACTTTCCATTC
1 CATTTACTTACTTTCCATTT
14984085 CATTTACTTA
1 CATTTACTTA
14984095 TCATAAGCTT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.23, C:0.26, G:0.00, T:0.51
Consensus pattern (20 bp):
CATTTACTTACTTTCCATTT
Found at i:14985579 original size:12 final size:12
Alignment explanation
Indices: 14985564--14985589 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14985554 ACATTTCCTT
14985564 ACCATCAACTTA
1 ACCATCAACTTA
14985576 ACCATCAACTTA
1 ACCATCAACTTA
14985588 AC
1 AC
14985590 TAACACAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.35, G:0.00, T:0.23
Consensus pattern (12 bp):
ACCATCAACTTA
Found at i:14997382 original size:5 final size:5
Alignment explanation
Indices: 14997374--14997410 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
14997364 ATTTATGTAT
14997374 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TA
14997411 ATGAATGGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATTA
Found at i:15000135 original size:51 final size:50
Alignment explanation
Indices: 15000067--15000260 Score: 187
Period size: 51 Copynumber: 3.9 Consensus size: 50
15000057 TAAATGATAC
* * * *
15000067 CCGGTTCACATAGTAGCCTACACATAGTCCTACACATGTGACCATTTTCAT
1 CCGGTACACATAGTAGCCTACACATAGTACTACACACGTGACCA-TATCAT
* * * * * * *
15000118 CCGATACACGTAGTAGCCTGCATAAAGTACTACACACGTGATCGA-AGCTAT
1 CCGGTACACATAGTAGCCTACACATAGTACTACACACGTGA-CCATATC-AT
* * * * *
15000169 CCGGTACGCATAGTAG-CTGCACATAGTGCTACACATGCGACC-TATCATT
1 CCGGTACACATAGTAGCCTACACATAGTACTACACACGTGACCATATCA-T
15000218 CCGGTACACATAGTAGCCTACACATAGTACTACACACGTGACC
1 CCGGTACACATAGTAGCCTACACATAGTACTACACACGTGACC
15000261 TAGCAACTTC
Statistics
Matches: 112, Mismatches: 26, Indels: 11
0.75 0.17 0.07
Matches are distributed among these distances:
48 1 0.01
49 19 0.17
50 42 0.38
51 48 0.43
52 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.24
Consensus pattern (50 bp):
CCGGTACACATAGTAGCCTACACATAGTACTACACACGTGACCATATCAT
Found at i:15000234 original size:100 final size:101
Alignment explanation
Indices: 15000075--15000258 Score: 255
Period size: 100 Copynumber: 1.8 Consensus size: 101
15000065 ACCCGGTTCA
* * * *
15000075 CATAGTAGCCTACACATAGTCCTACACATGTGACCATTTTCATCCGATACACGTAGTAGCCTGCA
1 CATAGTAGCCTACACATAGTCCTACACATGCGACCA-TATCATCCGATACACATAGTAGCCTACA
*
15000140 TAAAGTACTACACACGTGATCGAAGCTATCCGGTACG
65 CAAAGTACTACACACGTGATCGAAGCTATCCGGTACG
* * *
15000177 CATAGTAG-CTGCACATAGTGCTACACATGCGACC-TATCATTCCGGTACACATAGTAGCCTACA
1 CATAGTAGCCTACACATAGTCCTACACATGCGACCATATCA-TCCGATACACATAGTAGCCTACA
*
15000240 CATAGTACTACACACGTGA
65 CAAAGTACTACACACGTGA
15000259 CCTAGCAACT
Statistics
Matches: 72, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
99 4 0.06
100 37 0.51
101 23 0.32
102 8 0.11
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (101 bp):
CATAGTAGCCTACACATAGTCCTACACATGCGACCATATCATCCGATACACATAGTAGCCTACAC
AAAGTACTACACACGTGATCGAAGCTATCCGGTACG
Found at i:15005920 original size:51 final size:50
Alignment explanation
Indices: 15005862--15005997 Score: 193
Period size: 50 Copynumber: 2.7 Consensus size: 50
15005852 TCGGTTCACA
*
15005862 TAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCA-TCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACC--TATCATTCCGATACACG
* *
15005913 TAGTAGCCTGCACATAGTACTACACATGCGACCTATCATTCCGGTACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCTATCATTCCGATACACG
* * *
15005963 TAGTATCCCGCACATAGTACTACACACGTGACCTA
1 TAGTAGCCTGCACATAGTACTACACATGTGACCTA
15005998 GCAACTTCAC
Statistics
Matches: 77, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
49 4 0.05
50 41 0.53
51 32 0.42
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCTATCATTCCGATACACG
Found at i:15007740 original size:26 final size:26
Alignment explanation
Indices: 15007704--15007753 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
15007694 TTGAATTTTC
15007704 TCAAAATTTTA-TCAGGGGTAAAATCA
1 TCAAAATTTTACT-AGGGGTAAAATCA
*
15007730 TCAAATTTTTACTAGGGGTAAAAT
1 TCAAAATTTTACTAGGGGTAAAAT
15007754 TGGGATGAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.40, C:0.10, G:0.16, T:0.34
Consensus pattern (26 bp):
TCAAAATTTTACTAGGGGTAAAATCA
Found at i:15009199 original size:27 final size:27
Alignment explanation
Indices: 15009144--15009251 Score: 110
Period size: 27 Copynumber: 4.0 Consensus size: 27
15009134 AGGCGTTCCA
* **
15009144 TTCAGAATTTGCCACAAAGGCAT-CCCT
1 TTCAGAGTTTGCCACAAAGG-ATATTCT
15009171 TTCAGAGTTTGCCACAAAGGATATTCT
1 TTCAGAGTTTGCCACAAAGGATATTCT
* ** *
15009198 TTCAAAGTTCACCACAAAGGTTATTCT
1 TTCAGAGTTTGCCACAAAGGATATTCT
* * *
15009225 TTCAGAGTTTGCTATAAAGGCTATTCT
1 TTCAGAGTTTGCCACAAAGGATATTCT
15009252 CAGTTGTTGT
Statistics
Matches: 67, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
26 2 0.03
27 65 0.97
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (27 bp):
TTCAGAGTTTGCCACAAAGGATATTCT
Found at i:15011591 original size:247 final size:247
Alignment explanation
Indices: 15011153--15011637 Score: 686
Period size: 247 Copynumber: 2.0 Consensus size: 247
15011143 TATTTGAAAG
* * * *
15011153 GATTGAGTATATATTGTTGGATGCTTAAATTTATTTGAAATTAGATGTTTGAACTTGATTAAACA
1 GATTGAGTATATATTGTTGGATGCTTAAATTGATTTGAAATGAGATGTGTGAAATTGATTAAACA
* * *
15011218 TACTTGAAATTAATTAATTAAGTGAGTAAAAACTTATGGTTTGATTGATGATTTGAATGTGAATT
66 TACTTGAAATTAATTAATTAAGTGAGTAAAAACTCATGGTTTAATTAATGATTTGAATGTGAATT
* * * * *
15011283 AGTAGATCTTTTGTTTAAAGTAGAAATGTTATGTTTTGTGCCTATATTTGTTAGCTAAATGGCAT
131 AGTAGATCTTTTGTTCAAAGTAGAAATGGTATGTTTTGTACCTATATTTGTGAGCTAAATGGCAG
* * *
15011348 GTTTTGGAGGTGTCTAACGTAACTATTTGAAGGATATTAAGTTAAATGGTAA
196 GTTTTAGAGGTGTCTAAAGTAACCATTTGAAGGATATTAAGTTAAATGGTAA
* * *
15011400 GATTGAGTATATATTGTTGGATGGTTAAGTTGGTTTGAAATCGA-ATGTGTGAAATTGATTAAAC
1 GATTGAGTATATATTGTTGGATGCTTAAATTGATTTGAAAT-GAGATGTGTGAAATTGATTAAAC
* * * * * *
15011464 ATGA-TTGAAGTTGATTAATTAGGTTAGTAAACACTCATGGTTTAATTAATGATTTGGATGTGAA
65 AT-ACTTGAAATTAATTAATTAAGTGAGTAAAAACTCATGGTTTAATTAATGATTTGAATGTGAA
* * *
15011528 TTAGTAGATCTTTTGTTCGAAGTAGAAATGGTATGTTTTGTACTTATATTTGTGAGTTAAATGGC
129 TTAGTAGATCTTTTGTTCAAAGTAGAAATGGTATGTTTTGTACCTATATTTGTGAGCTAAATGGC
*
15011593 AGGTTTTAGAGGTGTTTAAAGTAACCATTTGAAGGATATTAAGTT
194 AGGTTTTAGAGGTGTCTAAAGTAACCATTTGAAGGATATTAAGTT
15011638 TGGGCATGAA
Statistics
Matches: 208, Mismatches: 28, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
247 206 0.99
248 2 0.01
ACGTcount: A:0.32, C:0.05, G:0.22, T:0.41
Consensus pattern (247 bp):
GATTGAGTATATATTGTTGGATGCTTAAATTGATTTGAAATGAGATGTGTGAAATTGATTAAACA
TACTTGAAATTAATTAATTAAGTGAGTAAAAACTCATGGTTTAATTAATGATTTGAATGTGAATT
AGTAGATCTTTTGTTCAAAGTAGAAATGGTATGTTTTGTACCTATATTTGTGAGCTAAATGGCAG
GTTTTAGAGGTGTCTAAAGTAACCATTTGAAGGATATTAAGTTAAATGGTAA
Found at i:15014210 original size:16 final size:16
Alignment explanation
Indices: 15014171--15014211 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
15014161 TCATTTGCTA
15014171 TTATATTTTATTTTTG
1 TTATATTTTATTTTTG
*
15014187 TT-TAATTTATTTTTTG
1 TTATATTTTA-TTTTTG
15014203 TTATATTTT
1 TTATATTTT
15014212 CTACGTAAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 6 0.29
16 10 0.48
17 5 0.24
ACGTcount: A:0.20, C:0.00, G:0.05, T:0.76
Consensus pattern (16 bp):
TTATATTTTATTTTTG
Found at i:15038400 original size:20 final size:20
Alignment explanation
Indices: 15038362--15038400 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
15038352 GCATCCATCA
* *
15038362 ATCATTCCTCATTCACTCTC
1 ATCATTCATCAATCACTCTC
*
15038382 ATCATTCATCAATCTCTCT
1 ATCATTCATCAATCACTCT
15038401 TTTATCTAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.23, C:0.36, G:0.00, T:0.41
Consensus pattern (20 bp):
ATCATTCATCAATCACTCTC
Found at i:15040692 original size:35 final size:35
Alignment explanation
Indices: 15040641--15040711 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
15040631 AATGAGTGAG
15040641 TATCATTCCCACGAGGATCGGGTTAAGGCACTTGA
1 TATCATTCCCACGAGGATCGGGTTAAGGCACTTGA
*
15040676 TATCATTCCCATGAGGATCGGGTTAAGGCACTTGA
1 TATCATTCCCACGAGGATCGGGTTAAGGCACTTGA
15040711 T
1 T
15040712 CGGCTGTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.28
Consensus pattern (35 bp):
TATCATTCCCACGAGGATCGGGTTAAGGCACTTGA
Found at i:15041456 original size:12 final size:12
Alignment explanation
Indices: 15041439--15041463 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15041429 GGGGAAAACT
15041439 AAATGCATGCTA
1 AAATGCATGCTA
15041451 AAATGCATGCTA
1 AAATGCATGCTA
15041463 A
1 A
15041464 GGATAACTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.16, G:0.16, T:0.24
Consensus pattern (12 bp):
AAATGCATGCTA
Found at i:15042378 original size:17 final size:17
Alignment explanation
Indices: 15042356--15042389 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
15042346 CACTAACATG
* *
15042356 AAAATGTAATGACAATA
1 AAAATGCAAAGACAATA
15042373 AAAATGCAAAGACAATA
1 AAAATGCAAAGACAATA
15042390 TATACTTAAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.62, C:0.09, G:0.12, T:0.18
Consensus pattern (17 bp):
AAAATGCAAAGACAATA
Found at i:15050014 original size:17 final size:17
Alignment explanation
Indices: 15049992--15050024 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
15049982 CACTAACATT
15049992 AAAATGCAATGACAATA
1 AAAATGCAATGACAATA
15050009 AAAATGCAATGACAAT
1 AAAATGCAATGACAAT
15050025 GTGCACTAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.18
Consensus pattern (17 bp):
AAAATGCAATGACAATA
Found at i:15053945 original size:21 final size:21
Alignment explanation
Indices: 15053916--15053956 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
15053906 TGTGTCTAAT
*
15053916 TTTGGTGTGGATGCATCTGAC
1 TTTGGTGTGGATCCATCTGAC
*
15053937 TTTGTTGTGGATCCATCTGA
1 TTTGGTGTGGATCCATCTGA
15053957 GTGTGCCTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.15, C:0.15, G:0.29, T:0.41
Consensus pattern (21 bp):
TTTGGTGTGGATCCATCTGAC
Found at i:15061267 original size:45 final size:45
Alignment explanation
Indices: 15061214--15061332 Score: 150
Period size: 45 Copynumber: 2.6 Consensus size: 45
15061204 ATTAATAAAA
* *
15061214 ATAAAGGTGGTTGCTATGTGTTGATTTCATCAGATACCAATG-GTT
1 ATAAAGGTGGTTGCTATGTGCTGATTTCACCAGATACCAATGAG-T
* * * * *
15061259 ATATAGGTGGTTGCTATGTGCAGATTTCACCCGGTACCATTGAGT
1 ATAAAGGTGGTTGCTATGTGCTGATTTCACCAGATACCAATGAGT
*
15061304 ATAAAGGTGGTTGCTATCTGCTGATTTCA
1 ATAAAGGTGGTTGCTATGTGCTGATTTCA
15061333 GCGAGTACTA
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
45 62 0.98
46 1 0.02
ACGTcount: A:0.24, C:0.14, G:0.25, T:0.36
Consensus pattern (45 bp):
ATAAAGGTGGTTGCTATGTGCTGATTTCACCAGATACCAATGAGT
Found at i:15061352 original size:45 final size:45
Alignment explanation
Indices: 15061214--15061359 Score: 143
Period size: 45 Copynumber: 3.2 Consensus size: 45
15061204 ATTAATAAAA
* * * **
15061214 ATAAAGGTGGTTGCTATGTGTTGATTTCATC-AGATACCAATGGTT
1 ATAAAGGTGGTTGCTATGTGCTGATTTCACCGAG-TACCATTGACT
* * *
15061259 ATATAGGTGGTTGCTATGTGCAGATTTCACCCG-GTACCATTGAGT
1 ATAAAGGTGGTTGCTATGTGCTGATTTCA-CCGAGTACCATTGACT
* * * *
15061304 ATAAAGGTGGTTGCTATCTGCTGATTTCAGCGAGTACTATTAACT
1 ATAAAGGTGGTTGCTATGTGCTGATTTCACCGAGTACCATTGACT
*
15061349 ATAAGGGTGGT
1 ATAAAGGTGGT
15061360 GTTGTGTGTT
Statistics
Matches: 83, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
44 2 0.02
45 79 0.95
46 2 0.02
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.35
Consensus pattern (45 bp):
ATAAAGGTGGTTGCTATGTGCTGATTTCACCGAGTACCATTGACT
Found at i:15076140 original size:23 final size:23
Alignment explanation
Indices: 15076110--15076190 Score: 81
Period size: 25 Copynumber: 3.3 Consensus size: 23
15076100 ACCCACAGCT
15076110 CATGTGAGCATACCAATTTATAG
1 CATGTGAGCATACCAATTTATAG
*
15076133 CATGTGAGATCATACCAATCTATAG
1 CATGTGAG--CATACCAATTTATAG
* * *
15076158 CTTGAGTAAGCATACCGATTTATAG
1 CAT--GTGAGCATACCAATTTATAG
*
15076183 CTTGTGAG
1 CATGTGAG
15076191 AGTATATCGA
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
23 12 0.25
25 32 0.67
27 4 0.08
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (23 bp):
CATGTGAGCATACCAATTTATAG
Found at i:15076191 original size:50 final size:50
Alignment explanation
Indices: 15076116--15076237 Score: 138
Period size: 50 Copynumber: 2.4 Consensus size: 50
15076106 AGCTCATGTG
* * ** *
15076116 AGCATACCAATTTATAGCATGTGAGA-TCATACCAATCTATAGCTTGAGTA
1 AGCATACCGATTTATAGCTTGTGAGAGT-ATACCAATCTATAGCTCAAATA
* * *
15076166 AGCATACCGATTTATAGCTTGTGAGAGTATATCGATCTATAGCTCAAATG
1 AGCATACCGATTTATAGCTTGTGAGAGTATACCAATCTATAGCTCAAATA
* *
15076216 AGCATATCGATTCATAGCTTGT
1 AGCATACCGATTTATAGCTTGT
15076238 ATGAGCATAA
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
50 60 0.98
51 1 0.02
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (50 bp):
AGCATACCGATTTATAGCTTGTGAGAGTATACCAATCTATAGCTCAAATA
Found at i:15076201 original size:25 final size:25
Alignment explanation
Indices: 15076119--15076209 Score: 78
Period size: 25 Copynumber: 3.6 Consensus size: 25
15076109 TCATGTGAGC
* * *
15076119 ATACCAATTTATAGCATGTGAGA-T
1 ATACCGATCTATAGCTTGTGAGAGT
* * *
15076143 CATACCAATCTATAGCTTGAGTA-AGC
1 -ATACCGATCTATAGCTTGTG-AGAGT
*
15076169 ATACCGATTTATAGCTTGTGAGAGT
1 ATACCGATCTATAGCTTGTGAGAGT
*
15076194 ATATCGATCTATAGCT
1 ATACCGATCTATAGCT
15076210 CAAATGAGCA
Statistics
Matches: 53, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
24 1 0.02
25 51 0.96
26 1 0.02
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (25 bp):
ATACCGATCTATAGCTTGTGAGAGT
Found at i:15076241 original size:25 final size:25
Alignment explanation
Indices: 15076166--15076246 Score: 76
Period size: 25 Copynumber: 3.2 Consensus size: 25
15076156 AGCTTGAGTA
* *
15076166 AGCATACCGATTTATAGCTTGTGA-G
1 AGCATATCGATTCATAGCTTGT-ATG
* ***
15076191 AGTATATCGA-TCTATAGCTCAAATG
1 AGCATATCGATTC-ATAGCTTGTATG
15076216 AGCATATCGATTCATAGCTTGTATG
1 AGCATATCGATTCATAGCTTGTATG
15076241 AGCATA
1 AGCATA
15076247 AATGTGCATG
Statistics
Matches: 43, Mismatches: 10, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
24 2 0.05
25 39 0.91
26 2 0.05
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (25 bp):
AGCATATCGATTCATAGCTTGTATG
Found at i:15078837 original size:50 final size:49
Alignment explanation
Indices: 15078723--15078910 Score: 225
Period size: 50 Copynumber: 3.8 Consensus size: 49
15078713 CATGCCAAAT
* ** * **
15078723 CCATGTCCCAGAAATGGTCTTACATGGGATGTTCTCATATCGGTGCCCATT
1 CCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGGTG-CCACG
* *
15078774 CCATGTCCAAGACATGGTCTTACAGGGGACCTCTCATCTCGGTGCCAACG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCC-ACG
*
15078824 CCATG-CCCTAGACATGGTCTTACATGGGACCTCTCGTCTCGGTGCTCACG
1 CCATGTCCC-AGACATGGTCTTACATGGGACCTCTCATCTCGGTGC-CACG
* *
15078874 CCATGTCCCAAACATGGTCTTACATGGGACCTTTCAT
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT
15078911 GATCTCAAGG
Statistics
Matches: 119, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
49 4 0.03
50 85 0.71
51 30 0.25
ACGTcount: A:0.21, C:0.30, G:0.22, T:0.27
Consensus pattern (49 bp):
CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCACG
Found at i:15078939 original size:56 final size:51
Alignment explanation
Indices: 15078723--15078939 Score: 196
Period size: 50 Copynumber: 4.2 Consensus size: 51
15078713 CATGCCAAAT
** * * * **
15078723 CCATGTCCCAGAA-ATGGTCTTACATGGGATGTTCTCATATCGGTGCCCATT
1 CCATGTCCCA-AACATGGTCTTACATGGGACCTTCTGATCTCGGTGCCAACG
* *
15078774 CCATGT-CCAAGACATGGTCTTACAGGGGACC-TCTCATCTCGGTGCCAACG
1 CCATGTCCCAA-ACATGGTCTTACATGGGACCTTCTGATCTCGGTGCCAACG
*
15078824 CCATG-CCCTAGACATGGTCTTACATGGGACC-TCTCG-TCTCGGTGCTC-ACG
1 CCATGTCCC-AAACATGGTCTTACATGGGACCTTCT-GATCTCGGTGC-CAACG
*
15078874 CCATGTCCCAAACATGGTCTTACATGGGACCTTTCATGATCTCAAGGATGCCAATG
1 CCATGTCCCAAACATGGTCTTACATGGGACC-TTC-TGATCTC--GG-TGCCAACG
15078930 CCATGTCCCA
1 CCATGTCCCA
15078940 TCTTACATGG
Statistics
Matches: 139, Mismatches: 12, Indels: 25
0.79 0.07 0.14
Matches are distributed among these distances:
49 1 0.01
50 86 0.62
51 26 0.19
52 3 0.02
53 5 0.04
55 3 0.02
56 15 0.11
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (51 bp):
CCATGTCCCAAACATGGTCTTACATGGGACCTTCTGATCTCGGTGCCAACG
Found at i:15085685 original size:56 final size:50
Alignment explanation
Indices: 15085462--15085709 Score: 327
Period size: 50 Copynumber: 4.8 Consensus size: 50
15085452 GATCATAACA
* * *
15085462 TGCCAAAGCCATGTCCCAGACATGGTCTTACA-GGGGCCGTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACC-TCTCGTCTCGG
* * * *
15085512 TGCTAATGCCATGTCCCAGACATGGTCTTAAATGGGGCCTCTCGTCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
*
15085562 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
15085612 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATCTCAAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC--G-TCTC--GG
* * *
15085667 ATTCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
15085710 TTACCCAAAT
Statistics
Matches: 178, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
50 127 0.71
51 6 0.03
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.22
ACGTcount: A:0.20, C:0.30, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
Found at i:15086980 original size:12 final size:12
Alignment explanation
Indices: 15086963--15086992 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
15086953 TCAGGCTGTT
15086963 ACACGGCCTAGC
1 ACACGGCCTAGC
*
15086975 ACACGGCCTGGC
1 ACACGGCCTAGC
15086987 ACACGG
1 ACACGG
15086993 GTGTTTTGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.40, G:0.30, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:15093431 original size:25 final size:25
Alignment explanation
Indices: 15093403--15093468 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
15093393 GTTCCGACCA
* *
15093403 ATAGCTCGTGTGAGCTTACCGATTT
1 ATAGCTCGTGTGAGCATACCGATCT
* *
15093428 ATAGCTCGTGAGAGCATACTGATCT
1 ATAGCTCGTGTGAGCATACCGATCT
* *
15093453 ATAGCTTGAGTGAGCA
1 ATAGCTCGTGTGAGCA
15093469 CACTGATTCA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (25 bp):
ATAGCTCGTGTGAGCATACCGATCT
Found at i:15116804 original size:29 final size:29
Alignment explanation
Indices: 15116702--15116805 Score: 156
Period size: 29 Copynumber: 3.6 Consensus size: 29
15116692 AAAAATAAAA
15116702 ATTTACCAAAATAT-TACAACTTTTTTTTT
1 ATTTACCAAAATATATA-AACTTTTTTTTT
* *
15116731 ATTTACCAAAATATCACAAAATTTTTTTTT
1 ATTTACCAAAATAT-ATAAACTTTTTTTTT
*
15116761 ATTTACCAAAATATATAAACTTTTTTATT
1 ATTTACCAAAATATATAAACTTTTTTTTT
15116790 ATTTACCAAAATATAT
1 ATTTACCAAAATATAT
15116806 CCAAAAAAAA
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
29 42 0.62
30 25 0.37
31 1 0.01
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.47
Consensus pattern (29 bp):
ATTTACCAAAATATATAAACTTTTTTTTT
Found at i:15116893 original size:27 final size:27
Alignment explanation
Indices: 15116872--15116938 Score: 116
Period size: 27 Copynumber: 2.5 Consensus size: 27
15116862 CGCCAATGGT
*
15116872 ATTGGCGGCACCAAAGGTGCCAAAACC
1 ATTGGCGGCACCAAAGGTGCCAATACC
*
15116899 ATTGGCGGCACCAATGGTGCCAATACC
1 ATTGGCGGCACCAAAGGTGCCAATACC
15116926 ATTGGCGGCACCA
1 ATTGGCGGCACCA
15116939 GTTGGTTTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.28, C:0.30, G:0.27, T:0.15
Consensus pattern (27 bp):
ATTGGCGGCACCAAAGGTGCCAATACC
Found at i:15117015 original size:22 final size:23
Alignment explanation
Indices: 15116987--15117118 Score: 126
Period size: 22 Copynumber: 5.6 Consensus size: 23
15116977 GAGAAAAAAG
15116987 GAAAGAAAGAAAGGAG-AGGAAA
1 GAAAGAAAGAAAGGAGAAGGAAA
15117009 GAAAGAAAGAAAGGAG-AGGAAA
1 GAAAGAAAGAAAGGAGAAGGAAA
*
15117031 GAAAGAAAGGAGAGGAGAAGAGAAA
1 GAAAGAAA-GAAAGGAGAAG-GAAA
* *
15117056 -AAAGGAAAGAAAGAAGAAGAAAA
1 GAAA-GAAAGAAAGGAGAAGGAAA
** *
15117079 GGAGAAGAGAAGAAAAAAGAAAGAAA
1 -GA-AAGA-AAGAAAGGAGAAGGAAA
*
15117105 GAAGGAAAGAAAGG
1 GAAAGAAAGAAAGG
15117119 GAAATGAGAA
Statistics
Matches: 92, Mismatches: 10, Indels: 15
0.79 0.09 0.13
Matches are distributed among these distances:
22 30 0.33
23 16 0.17
24 17 0.18
25 13 0.14
26 16 0.17
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (23 bp):
GAAAGAAAGAAAGGAGAAGGAAA
Found at i:15117102 original size:16 final size:16
Alignment explanation
Indices: 15117061--15117117 Score: 55
Period size: 16 Copynumber: 3.5 Consensus size: 16
15117051 AGAAAAAAGG
15117061 AAAGAAAGAAGAAG-AA
1 AAAGAAAG-AGAAGAAA
*
15117077 AAGGAGAAGAGAAGAAA
1 AAAGA-AAGAGAAGAAA
*
15117094 AAAGAAAGA-AAGAAGG
1 AAAGAAAGAGAAGAA-A
15117110 AAAGAAAG
1 AAAGAAAG
15117118 GGAAATGAGA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
15 5 0.14
16 21 0.60
17 9 0.26
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (16 bp):
AAAGAAAGAGAAGAAA
Found at i:15117122 original size:22 final size:20
Alignment explanation
Indices: 15116973--15117117 Score: 108
Period size: 18 Copynumber: 7.1 Consensus size: 20
15116963 TGGTGGGGGC
*
15116973 AGAAGAGAAAAAAGGAAAGAA
1 AGAA-AGAAAGAAGGAAAGAA
*
15116994 AGAAAG-GAG-AGGAAAGAA
1 AGAAAGAAAGAAGGAAAGAA
15117012 AGAAAGAAAGGAGAGGAAAGAA
1 AGAAAGAAA-GA-AGGAAAGAA
15117034 AGAAAGGAGAGGAGAAGAGAAA-AA
1 AGAAA-GA-A--AGAAG-GAAAGAA
15117058 AGGAAAGAAAGAA-G-AAGAA
1 A-GAAAGAAAGAAGGAAAGAA
*
15117077 A-AGGAGAAGAGAA-GAAA-AA
1 AGA-AAGAA-AGAAGGAAAGAA
15117096 AGAAAGAAAGAAGGAAAGAA
1 AGAAAGAAAGAAGGAAAGAA
15117116 AG
1 AG
15117118 GGAAATGAGA
Statistics
Matches: 102, Mismatches: 5, Indels: 35
0.72 0.04 0.25
Matches are distributed among these distances:
17 1 0.01
18 25 0.25
19 22 0.22
20 10 0.10
21 8 0.08
22 14 0.14
23 3 0.03
24 8 0.08
25 10 0.10
26 1 0.01
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (20 bp):
AGAAAGAAAGAAGGAAAGAA
Found at i:15117133 original size:49 final size:46
Alignment explanation
Indices: 15117046--15117182 Score: 108
Period size: 49 Copynumber: 2.9 Consensus size: 46
15117036 AAAGGAGAGG
*
15117046 AGAAGAGAAAAAAGGAAAGAAAGAAGAAGAAAAGGAGAAGAGAAGAAAAA
1 AGAA-AGAAAGAAGGAAAGAAAGAAGAAGAAAAGGAGAA-A-AA-AAAAA
* *
15117096 AGAAAGAAAGAAGGAAAGAAAGGGAA-ATGAGAA-GAGAAAAAAAAAA
1 AGAAAGAAAGAAGGAAAGAAA--GAAGAAGAAAAGGAGAAAAAAAAAA
*
15117142 AG-AAG-AAGAAGAGGGAAGAAAGGAA-AA-AAAA-GAGAAAAAAA
1 AGAAAGAAAG-A-AGGAAAGAAA-GAAGAAGAAAAGGAGAAAAAAA
15117183 GGTAATTTTA
Statistics
Matches: 77, Mismatches: 6, Indels: 14
0.79 0.06 0.14
Matches are distributed among these distances:
44 16 0.21
45 9 0.12
46 16 0.21
47 2 0.03
48 1 0.01
49 21 0.27
50 9 0.12
51 3 0.04
ACGTcount: A:0.70, C:0.00, G:0.29, T:0.01
Consensus pattern (46 bp):
AGAAAGAAAGAAGGAAAGAAAGAAGAAGAAAAGGAGAAAAAAAAAA
Found at i:15117139 original size:44 final size:44
Alignment explanation
Indices: 15117080--15117182 Score: 115
Period size: 44 Copynumber: 2.3 Consensus size: 44
15117070 AGAAGAAAAG
15117080 GAGAAGAGAAGAAAAAAGAAAG-A-AAG-A-AGGAAAGAAAGGGAAA
1 GAGAAGAGAA-AAAAAA-AAAGAAGAAGAAGAGGAAAGAAA-GGAAA
*
15117123 TGAGAAGAGAAAAAAAAAAAGAAGAAGAAGAGGGAAGAAAGGAAA
1 -GAGAAGAGAAAAAAAAAAAGAAGAAGAAGAGGAAAGAAAGGAAA
* *
15117168 AAAAAGAGAAAAAAA
1 GAGAAGAGAAAAAAA
15117183 GGTAATTTTA
Statistics
Matches: 52, Mismatches: 3, Indels: 8
0.83 0.05 0.13
Matches are distributed among these distances:
42 4 0.08
43 7 0.13
44 26 0.50
45 6 0.12
46 9 0.17
ACGTcount: A:0.70, C:0.00, G:0.29, T:0.01
Consensus pattern (44 bp):
GAGAAGAGAAAAAAAAAAAGAAGAAGAAGAGGAAAGAAAGGAAA
Found at i:15117161 original size:46 final size:41
Alignment explanation
Indices: 15116973--15117182 Score: 148
Period size: 40 Copynumber: 5.0 Consensus size: 41
15116963 TGGTGGGGGC
* * *
15116973 AGAAGAGAAAAAAGGAAAGAAA-GAAAG-G-AGAGGAAAGAA
1 AGAA-AGAAAGAAGGAAAGAAAGGAAAGAGAAGAGAAAAAAA
* *
15117012 AGAAAGAAAGGAGAGGAAAGAAA-GAAAGGAGAGGAGAAGAGAAA
1 AGAAAGAAA-GA-AGGAAAGAAAGGAAA-GAGAAGAGAA-AAAAA
* * *
15117056 A-AAGGAAAGAAAG-AAG-AAGAAAAGGAGAAGAGAAGAAAAA
1 AGAAAGAAAGAAGGAAAGAAAGGAAA-GAGAAGAGAA-AAAAA
15117096 AGAAAGAAAGAAGGAAAGAAAGGGAAATGAGAAGAGAAAAAAA
1 AGAAAGAAAGAAGGAAAGAAA-GGAAA-GAGAAGAGAAAAAAA
* * *
15117139 A-AAAGAAGAAGAAGAGGGAAGAAAGGAAAAAAAAGAGAAAAAAA
1 AGAAAG-A-AAG-A-AGGAAAGAAAGGAAAGAGAAGAGAAAAAAA
15117183 GGTAATTTTA
Statistics
Matches: 139, Mismatches: 17, Indels: 25
0.77 0.09 0.14
Matches are distributed among these distances:
38 5 0.04
39 7 0.05
40 36 0.26
41 13 0.09
42 10 0.07
43 19 0.14
44 34 0.24
45 6 0.04
46 9 0.06
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (41 bp):
AGAAAGAAAGAAGGAAAGAAAGGAAAGAGAAGAGAAAAAAA
Found at i:15117178 original size:78 final size:80
Alignment explanation
Indices: 15117010--15117183 Score: 189
Period size: 75 Copynumber: 2.1 Consensus size: 80
15117000 GAGAGGAAAG
*
15117010 AAAGAAAGAAAGGAGAGGAAAGAAAGAAAGGAGAGGAGAAGAGAAAAAAGGAAAGAAAGAAGAAG
1 AAAGAAAGAAA-GAGAGGAAAGAAAG--AGGAAAGGAGAAGAGAAAAAA-GAAAGAAAGAAGAAG
*
15117075 AAAAGGAGAAGAGAAGAAA
62 AAAAGGAGAAGAGAAAAAA
* *
15117094 AAAGAAAGAAAGA-AGGAAAGAAAG-GGAAATGAGAAGAG-AAAAA-AAA-AAAGAAGAAGAAGA
1 AAAGAAAGAAAGAGAGGAAAGAAAGAGGAAAGGAGAAGAGAAAAAAGAAAGAAAGAAGAAGAAAA
15117154 GG-GAAGAAAGGAAAAAA
66 GGAGAAG--A-GAAAAAA
*
15117171 AAGAGAAAAAAAG
1 AA-AGAAAGAAAG
15117184 GTAATTTTAT
Statistics
Matches: 81, Mismatches: 5, Indels: 14
0.81 0.05 0.14
Matches are distributed among these distances:
74 4 0.05
75 15 0.19
76 4 0.05
77 8 0.10
78 14 0.17
79 12 0.15
82 11 0.14
83 2 0.02
84 11 0.14
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.01
Consensus pattern (80 bp):
AAAGAAAGAAAGAGAGGAAAGAAAGAGGAAAGGAGAAGAGAAAAAAGAAAGAAAGAAGAAGAAAA
GGAGAAGAGAAAAAA
Found at i:15117180 original size:84 final size:84
Alignment explanation
Indices: 15117005--15117181 Score: 191
Period size: 84 Copynumber: 2.1 Consensus size: 84
15116995 GAAAGGAGAG
* * * *
15117005 GAAAGAAAGAAAGAAAGGAGAGGAAAGAAAGAAAGGAGAGGAGAAGAGAAAAAAGGAAAGAAAGA
1 GAAA-AAAGAAAGAAAGGAGAGGAAAGAAAGAAAGGAGAAGAGAAAAAAAAAAAGAAAAGAAAGA
* *
15117070 AGAAGAAAAGGAGAAGAGAA
65 AGAAGAAAAGGAGAAAAAAA
*
15117090 GAAAAAAGAAAGAAA-GA-AGGAAAGAAAGGGAAATGAGAAGAGAAAAAAAAAAAGAAGAAG-AA
1 GAAAAAAGAAAGAAAGGAGAGGAAAGAAA--GAAAGGAGAAGAGAAAAAAAAAAAGAA-AAGAAA
* *
15117152 GAGGGAAG-AAAGGAAAAAAAAGA
63 GA-AGAAGAAAAGGAGAAAAAA-A
15117175 GAAAAAA
1 GAAAAAA
15117182 AGGTAATTTT
Statistics
Matches: 78, Mismatches: 9, Indels: 10
0.80 0.09 0.10
Matches are distributed among these distances:
82 10 0.13
83 2 0.03
84 47 0.60
85 19 0.24
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.01
Consensus pattern (84 bp):
GAAAAAAGAAAGAAAGGAGAGGAAAGAAAGAAAGGAGAAGAGAAAAAAAAAAAGAAAAGAAAGAA
GAAGAAAAGGAGAAAAAAA
Found at i:15117216 original size:18 final size:20
Alignment explanation
Indices: 15117186--15117223 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
15117176 AAAAAAAGGT
15117186 AATTTTATTTATAA-ATTTG
1 AATTTTATTTATAATATTTG
15117205 AATTTT-TTTATAATATTTG
1 AATTTTATTTATAATATTTG
15117224 TGTGTTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (20 bp):
AATTTTATTTATAATATTTG
Found at i:15124463 original size:26 final size:26
Alignment explanation
Indices: 15124414--15124466 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15124404 ACACACTAAA
* *
15124414 ATTATTAATTTTATACTACGAATAAT
1 ATTAATAATTTTATACTACAAATAAT
15124440 ATTAATAATTTTATACT-CAAAATAAT
1 ATTAATAATTTTATACTAC-AAATAAT
15124466 A
1 A
15124467 CACACTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.08, G:0.02, T:0.43
Consensus pattern (26 bp):
ATTAATAATTTTATACTACAAATAAT
Found at i:15124609 original size:3 final size:3
Alignment explanation
Indices: 15124601--15124644 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
15124591 NNNNNNNNNN
15124601 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
15124645 TAATAATAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:15124741 original size:19 final size:21
Alignment explanation
Indices: 15124717--15124755 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
15124707 ACTACAACAA
*
15124717 AAAAT-ATTACAA-AATATAC
1 AAAATAATAACAATAATATAC
15124736 AAAATAATAACAATAATATA
1 AAAATAATAACAATAATATA
15124756 ATCAATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 6 0.35
21 6 0.35
ACGTcount: A:0.67, C:0.08, G:0.00, T:0.26
Consensus pattern (21 bp):
AAAATAATAACAATAATATAC
Found at i:15124935 original size:27 final size:27
Alignment explanation
Indices: 15124897--15124999 Score: 152
Period size: 27 Copynumber: 3.8 Consensus size: 27
15124887 ATAATACGAG
15124897 TGGTGCCGCCAATGGCATTGGCACCAT
1 TGGTGCCGCCAATGGCATTGGCACCAT
*
15124924 TGGTGCCGCCAATGGTATTGGCACCAT
1 TGGTGCCGCCAATGGCATTGGCACCAT
** *
15124951 TGGTGCCGCCAATGGTTTTGGCACCTT
1 TGGTGCCGCCAATGGCATTGGCACCAT
**
15124978 TGGTGCCGCCAATACCATTGGC
1 TGGTGCCGCCAATGGCATTGGC
15125000 GTGACCAGTA
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 69 1.00
ACGTcount: A:0.17, C:0.28, G:0.29, T:0.26
Consensus pattern (27 bp):
TGGTGCCGCCAATGGCATTGGCACCAT
Found at i:15125116 original size:27 final size:28
Alignment explanation
Indices: 15125069--15125167 Score: 121
Period size: 29 Copynumber: 3.5 Consensus size: 28
15125059 TTTTTTTGAT
*
15125069 ATATTTCGGTAAATAATAAAAAAGTT-TA
1 ATATTTTGGTAAATAA-AAAAAAGTTGTA
15125097 TATATTTTGGTAAATAAAAAAAAAGTTGTA
1 -ATATTTTGGTAAAT-AAAAAAAAGTTGTA
* **
15125127 CTATTTTAATAAATAAAAAAAA-TTGTA
1 ATATTTTGGTAAATAAAAAAAAGTTGTA
15125154 ATATTTTGGTAAAT
1 ATATTTTGGTAAAT
15125168 TTTTATTTTT
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
27 16 0.26
28 8 0.13
29 33 0.54
30 4 0.07
ACGTcount: A:0.49, C:0.02, G:0.10, T:0.38
Consensus pattern (28 bp):
ATATTTTGGTAAATAAAAAAAAGTTGTA
Found at i:15128041 original size:47 final size:47
Alignment explanation
Indices: 15127955--15128055 Score: 114
Period size: 47 Copynumber: 2.1 Consensus size: 47
15127945 ATTTATCTGT
* * *
15127955 TCGACCAATGGTTTATCCAAAAAGTATTTTAGTCGGTAGTCATCTAC
1 TCGACCAAAGGTTTATCCAAAAAGTATTTTAATCAGTAGTCATCTAC
* * * * *
15128002 TCGATCAAAGGTTTATCCACAACGTATTTTAATTAGTAGTTATCTGA-
1 TCGACCAAAGGTTTATCCAAAAAGTATTTTAATCAGTAGTCATCT-AC
15128049 TCGACCA
1 TCGACCA
15128056 GTGTTTCATC
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
47 43 0.98
48 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.35
Consensus pattern (47 bp):
TCGACCAAAGGTTTATCCAAAAAGTATTTTAATCAGTAGTCATCTAC
Found at i:15130532 original size:41 final size:41
Alignment explanation
Indices: 15130469--15130750 Score: 282
Period size: 41 Copynumber: 6.8 Consensus size: 41
15130459 CTTTGAATGT
* * **
15130469 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCATTGATCAAA
1 AAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGATGTAA
* *
15130510 AAGGGGTTACTATGTGCTGATTCCCCGTATCATTGAT-TATA
1 AAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGATGTA-A
* * * * * *
15130551 AAGTGGTTGTTAAGTGCTAATTCCACTGTATCCTTGATTGTGA
1 AAGGGGTTGCTAAGTGCTGATTCC-CCGTATCATTGA-TGTAA
* *
15130594 AAGGGGTTGCTATGTGCTGATTCCCCGTATCATTGAT-TAT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGATGTAA
* *
15130634 AAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTTA
1 AAGG-GGTTGCTAAGTGCTGATTCC-CCGTATCATTGA-TGTAA
* * * *
15130678 AAGGGGTTGCTATGTGCTGATTCCCTGTTTCATTGAT-TAT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGATGTAA
*
15130718 AAGGTGATTGCTAAGTGCTGATTCCACCGTATC
1 AAGG-GGTTGCTAAGTGCTGATTCC-CCGTATC
15130751 CTCGATTGTG
Statistics
Matches: 196, Mismatches: 35, Indels: 19
0.78 0.14 0.08
Matches are distributed among these distances:
40 11 0.06
41 92 0.47
42 45 0.23
43 42 0.21
44 6 0.03
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.35
Consensus pattern (41 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGATGTAA
Found at i:15130612 original size:84 final size:84
Alignment explanation
Indices: 15130468--15130763 Score: 427
Period size: 84 Copynumber: 3.6 Consensus size: 84
15130458 TCTTTGAATG
* * * *** *
15130468 TAAGG-GGTTGCTAAGTGCAGATTCC-CCGAATCATTGA-TCAAAAAGGGGTTACTATGTGCTGA
1 TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAAAGGGGTTGCTATGTGCTGA
15130530 TTCCCCGTATCATTGATTA
66 TTCCCCGTATCATTGATTA
* * * *
15130549 TAAAGTGGTTGTTAAGTGCTAATTCCACTGTATCCTTGATTGTGAAAGGGGTTGCTATGTGCTGA
1 TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAAAGGGGTTGCTATGTGCTGA
15130614 TTCCCCGTATCATTGATTA
66 TTCCCCGTATCATTGATTA
*
15130633 TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTTAAAGGGGTTGCTATGTGCTGA
1 TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAAAGGGGTTGCTATGTGCTGA
* *
15130698 TTCCCTGTTTCATTGATTA
66 TTCCCCGTATCATTGATTA
* *
15130717 TAAGGTGATTGCTAAGTGCTGATTCCACCGTATCCTCGATTGTGAAA
1 TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAAA
15130764 CGTTGCTAGT
Statistics
Matches: 191, Mismatches: 21, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
81 4 0.02
82 17 0.09
83 9 0.05
84 161 0.84
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.35
Consensus pattern (84 bp):
TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAAAGGGGTTGCTATGTGCTGA
TTCCCCGTATCATTGATTA
Found at i:15135510 original size:36 final size:38
Alignment explanation
Indices: 15135470--15135556 Score: 97
Period size: 36 Copynumber: 2.3 Consensus size: 38
15135460 TTCTTTCTCA
* * *
15135470 TTTTCAACAACATCTTCTTCTTCAG-TGAT-AACTTCC
1 TTTTCAACAACAACTTCTACTTCAGATCATAAACTTCC
* *
15135506 TTTTCTACAACAACTTCTACTTCTGTATCATAAACTTCC
1 TTTTCAACAACAACTTCTACTTCAG-ATCATAAACTTCC
*
15135545 TTATCAACAACA
1 TTTTCAACAACA
15135557 GTGTCTTCTT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
36 21 0.51
38 3 0.07
39 17 0.41
ACGTcount: A:0.30, C:0.28, G:0.03, T:0.39
Consensus pattern (38 bp):
TTTTCAACAACAACTTCTACTTCAGATCATAAACTTCC
Found at i:15137307 original size:5 final size:5
Alignment explanation
Indices: 15137297--15137321 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
15137287 AACAAAACCT
15137297 AAATA AAATA AAATA AAATA AAATA
1 AAATA AAATA AAATA AAATA AAATA
15137322 CAATCATGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAATA
Found at i:15140854 original size:43 final size:43
Alignment explanation
Indices: 15140577--15140878 Score: 225
Period size: 43 Copynumber: 7.1 Consensus size: 43
15140567 GATCATGACT
* * * * * * *
15140577 TTTAGCGGTGCTTCTATACAAAATGCCGCTAAAGGTCGTAGTC
1 TTTAGCGGCGCTTTTATAAAAAATACCGCTATAGGTCATGGTC
* * * * * * *
15140620 TTTAGTGGCGCTTCATTAT--AGAACACCGCGAAAGGTCCTAGTC
1 TTTAGCGGCGCTT--TTATAAAAAATACCGCTATAGGTCATGGTC
* ** *
15140663 TTTAGCGGCGCTTTAATATTAAACACCGCTATAGGTCATGGTC
1 TTTAGCGGCGCTTTTATAAAAAATACCGCTATAGGTCATGGTC
* * * * * *
15140706 TTTAGCGGTGCCTTAATATAAAATGCCGCTATAGGTCATGATC
1 TTTAGCGGCGCTTTTATAAAAAATACCGCTATAGGTCATGGTC
* * * * * *
15140749 GTTAGTGGTGCTTTTGTAGAAAACACCGCTATAGGTCATGGTC
1 TTTAGCGGCGCTTTTATAAAAAATACCGCTATAGGTCATGGTC
* * * * *
15140792 -TT-GCGGCGCTATTGTAAAAAATGCCGCTATAAGTCAAGGTC
1 TTTAGCGGCGCTTTTATAAAAAATACCGCTATAGGTCATGGTC
* *
15140833 TTTAGCGGCGCTTTTATAAAAAATACTGCTATAAGTCATGGTC
1 TTTAGCGGCGCTTTTATAAAAAATACCGCTATAGGTCATGGTC
15140876 TTT
1 TTT
15140879 TGCAGCACTT
Statistics
Matches: 209, Mismatches: 44, Indels: 12
0.79 0.17 0.05
Matches are distributed among these distances:
41 34 0.16
42 4 0.02
43 168 0.80
45 3 0.01
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (43 bp):
TTTAGCGGCGCTTTTATAAAAAATACCGCTATAGGTCATGGTC
Found at i:15140864 original size:84 final size:85
Alignment explanation
Indices: 15140660--15140877 Score: 242
Period size: 84 Copynumber: 2.6 Consensus size: 85
15140650 AAAGGTCCTA
* ** * *
15140660 GTCTTTAGCGGCGCTTTAATATTAAACACCGCTATAGGTCATGGTCTTTAGCGGTGCCTTAATAT
1 GTCTTTAGCGGCGCTTTTATAAAAAACACCGCTATAGGTCATGGTC-TTAGCGGCGCCTTAATAA
* *
15140725 AAAATGCCGCTATAGGTCATG
65 AAAATGCCGCTATAAGTCAAG
* * * * * * **
15140746 ATCGTTAGTGGTGCTTTTGTAGAAAACACCGCTATAGGTCATGGTCTT-GCGGCG-CTATTGTAA
1 GTCTTTAGCGGCGCTTTTATAAAAAACACCGCTATAGGTCATGGTCTTAGCGGCGCCT-TAATAA
15140809 AAAATGCCGCTATAAGTCAAG
65 AAAATGCCGCTATAAGTCAAG
* * *
15140830 GTCTTTAGCGGCGCTTTTATAAAAAATACTGCTATAAGTCATGGTCTT
1 GTCTTTAGCGGCGCTTTTATAAAAAACACCGCTATAGGTCATGGTCTT
15140878 TTGCAGCACT
Statistics
Matches: 108, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
83 2 0.02
84 66 0.61
85 2 0.02
86 38 0.35
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (85 bp):
GTCTTTAGCGGCGCTTTTATAAAAAACACCGCTATAGGTCATGGTCTTAGCGGCGCCTTAATAAA
AAATGCCGCTATAAGTCAAG
Found at i:15144030 original size:115 final size:115
Alignment explanation
Indices: 15143828--15144241 Score: 594
Period size: 115 Copynumber: 3.6 Consensus size: 115
15143818 GAATGCATCC
* * ** * * * * *
15143828 TTGCGGCGTTTTTATGGAAGCGCCGCTAATTCTAAGTCTATACCAGCGTTTTGATAGAAGCACCG
1 TTGCGGCATTTTTATGCAAGCGCCGCTAATTCTCGGTCTATAGCGGCGTTTTGACATAAGCGCCG
* * *
15143893 CTAATGCCACTAAAAGCTCAAGATAAAACGATTCGTTTTGATTAACACTT
66 CTAACGCCACTAAAAGCTCAAGATAAAATGATGCGTTTTGATTAACACTT
** * *
15143943 TTGCGGCATTTTTATAAAAGCGCTGCTAATTCTCGGTCTATAGCGGCGTTTTGACATAAGCGTCG
1 TTGCGGCATTTTTATGCAAGCGCCGCTAATTCTCGGTCTATAGCGGCGTTTTGACATAAGCGCCG
*
15144008 CTAACGCCACTAAAAGCTCAAGATAAAATGATGAGTTTTGATTAACACTT
66 CTAACGCCACTAAAAGCTCAAGATAAAATGATGCGTTTTGATTAACACTT
* * *
15144058 TTGTGGCATTTTTATGCAAGCGCCGCTAATTCTCGGTCTATAGTGGCATTTTGACATAAGCGCCG
1 TTGCGGCATTTTTATGCAAGCGCCGCTAATTCTCGGTCTATAGCGGCGTTTTGACATAAGCGCCG
*
15144123 CTAACGCCACTAAAAGCTCAAGATAAAATGATGCGTTTTGGTTAACACTT
66 CTAACGCCACTAAAAGCTCAAGATAAAATGATGCGTTTTGATTAACACTT
* * * * *
15144173 TTGCGGCGTTTTTATGCAAGCGCCGCTAATTCTTGTTCTATAGCGGCTTTTTGACATAAGCGCCT
1 TTGCGGCATTTTTATGCAAGCGCCGCTAATTCTCGGTCTATAGCGGCGTTTTGACATAAGCGCCG
15144238 CTAA
66 CTAA
15144242 TGCTCGAGCA
Statistics
Matches: 267, Mismatches: 32, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
115 267 1.00
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (115 bp):
TTGCGGCATTTTTATGCAAGCGCCGCTAATTCTCGGTCTATAGCGGCGTTTTGACATAAGCGCCG
CTAACGCCACTAAAAGCTCAAGATAAAATGATGCGTTTTGATTAACACTT
Found at i:15151612 original size:15 final size:13
Alignment explanation
Indices: 15151576--15151605 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
15151566 ACAAATAGGA
15151576 TTTTCTTCTCTTT
1 TTTTCTTCTCTTT
15151589 TTTTCTTCTCTTT
1 TTTTCTTCTCTTT
15151602 TTTT
1 TTTT
15151606 TCTTTCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTCTTCTCTTT
Found at i:15151613 original size:13 final size:13
Alignment explanation
Indices: 15151576--15151613 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
15151566 ACAAATAGGA
15151576 TTTTC-TTCTCTTT
1 TTTTCTTTCT-TTT
15151589 TTTTCTTCTCTTTT
1 TTTTCTT-TCTTTT
15151603 TTTTCTTTCTT
1 TTTTCTTTCTT
15151614 ATTTATTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 9 0.39
14 11 0.48
15 3 0.13
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTTCTTTCTTTT
Found at i:15155908 original size:1 final size:1
Alignment explanation
Indices: 15155904--15155938 Score: 61
Period size: 1 Copynumber: 35.0 Consensus size: 1
15155894 GGTTCCCCCC
*
15155904 TTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
15155939 CTAATCCGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 32 1.00
ACGTcount: A:0.00, C:0.03, G:0.00, T:0.97
Consensus pattern (1 bp):
T
Found at i:15156590 original size:19 final size:19
Alignment explanation
Indices: 15156566--15156630 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 19
15156556 TATAATTTTG
*
15156566 AAATTTAAAAAATGTATAA
1 AAATTTAAAAAATATATAA
* *
15156585 AAATTT--TAAATATATAT
1 AAATTTAAAAAATATATAA
*
15156602 AAATTAATAAAATAATATAAAA
1 AAATT--TAAAA-AATATATAA
15156624 AAATTTA
1 AAATTTA
15156631 CATTAAGAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 9
0.70 0.12 0.18
Matches are distributed among these distances:
17 13 0.37
19 7 0.20
20 2 0.06
21 1 0.03
22 12 0.34
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (19 bp):
AAATTTAAAAAATATATAA
Found at i:15156746 original size:16 final size:16
Alignment explanation
Indices: 15156702--15156751 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
15156692 TCTAGATTCA
15156702 TTGTATTTTTATATATT
1 TTGTA-TTTTATATATT
**
15156719 TT-TAATAGTATATATT
1 TTGT-ATTTTATATATT
15156735 TTGTATTTTATATATT
1 TTGTATTTTATATATT
15156751 T
1 T
15156752 GTAAAATAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
16 23 0.85
17 4 0.15
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (16 bp):
TTGTATTTTATATATT
Found at i:15165260 original size:21 final size:22
Alignment explanation
Indices: 15165223--15165263 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
15165213 CACAGTTCCA
15165223 TAATTGAAATAAATAATAATAG
1 TAATTGAAATAAATAATAATAG
*
15165245 TAATTG-AATTAATAATAAT
1 TAATTGAAATAAATAATAAT
15165264 CTTAAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.37
Consensus pattern (22 bp):
TAATTGAAATAAATAATAATAG
Found at i:15169226 original size:35 final size:36
Alignment explanation
Indices: 15169187--15169261 Score: 89
Period size: 38 Copynumber: 2.1 Consensus size: 36
15169177 AATATTTGAA
* *
15169187 CTCTTGTAT-TGGGATCCATTTTGTTAAAGTAGTTG
1 CTCTTGTATCTGGGATCCATTTTGGTAAAGTAATTG
* *
15169222 CTCTTTTTTCCCTGGGATCCATTTTGGTAAAGTAATTG
1 CTCTTGTAT--CTGGGATCCATTTTGGTAAAGTAATTG
15169260 CT
1 CT
15169262 TTTTTTTCCC
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
35 7 0.21
38 26 0.79
ACGTcount: A:0.19, C:0.16, G:0.20, T:0.45
Consensus pattern (36 bp):
CTCTTGTATCTGGGATCCATTTTGGTAAAGTAATTG
Found at i:15169238 original size:38 final size:38
Alignment explanation
Indices: 15169196--15169272 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
15169186 ACTCTTGTAT
* *
15169196 TGGGATCCATTTTGTTAAAGTAGTTGCTCTTTTTTCCC
1 TGGGATCCATTTTGGTAAAGTAATTGCTCTTTTTTCCC
*
15169234 TGGGATCCATTTTGGTAAAGTAATTGCTTTTTTTTCCC
1 TGGGATCCATTTTGGTAAAGTAATTGCTCTTTTTTCCC
15169272 T
1 T
15169273 TTCCTCAACT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.17, C:0.17, G:0.18, T:0.48
Consensus pattern (38 bp):
TGGGATCCATTTTGGTAAAGTAATTGCTCTTTTTTCCC
Found at i:15170722 original size:16 final size:16
Alignment explanation
Indices: 15170701--15170756 Score: 78
Period size: 16 Copynumber: 3.5 Consensus size: 16
15170691 TTGAGTTACT
15170701 ATTACAG-TTCTATTCC
1 ATTACAGCTT-TATTCC
* *
15170717 ATTACAGCATTATTCA
1 ATTACAGCTTTATTCC
15170733 ATTACAGCTTTATTCC
1 ATTACAGCTTTATTCC
15170749 ATTACAGC
1 ATTACAGC
15170757 GAACCAAACG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
16 34 0.97
17 1 0.03
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.39
Consensus pattern (16 bp):
ATTACAGCTTTATTCC
Found at i:15170976 original size:19 final size:18
Alignment explanation
Indices: 15170927--15170976 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 18
15170917 TAATTTTAAA
*
15170927 TAAATAAAATTTAAAATCT
1 TAAAT-AAATTTAAAAACT
*
15170946 TAATTAACATTTAAAAGACT
1 TAAATAA-ATTTAAAA-ACT
15170966 TAAATAAATTT
1 TAAATAAATTT
15170977 TGAAAAANNN
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 2 0.08
19 16 0.62
20 8 0.31
ACGTcount: A:0.54, C:0.06, G:0.02, T:0.38
Consensus pattern (18 bp):
TAAATAAATTTAAAAACT
Found at i:15172691 original size:6 final size:6
Alignment explanation
Indices: 15172680--15172716 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
15172670 TTGTTGTCTC
*
15172680 TATTTT TATTTT TATTTT T-CTTT TATTTT TATTTT TA
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TA
15172717 AAAACTATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 4 0.14
6 24 0.86
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (6 bp):
TATTTT
Found at i:15172703 original size:11 final size:11
Alignment explanation
Indices: 15172680--15172714 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
15172670 TTGTTGTCTC
15172680 TATTTTTATTTT
1 TATTTTTA-TTT
*
15172692 TATTTTTCTTT
1 TATTTTTATTT
15172703 TATTTTTATTT
1 TATTTTTATTT
15172714 T
1 T
15172715 TAAAAACTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 14 0.67
12 7 0.33
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (11 bp):
TATTTTTATTT
Found at i:15172705 original size:17 final size:17
Alignment explanation
Indices: 15172683--15172715 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
15172673 TTGTCTCTAT
15172683 TTTTATTTTTATTTTTC
1 TTTTATTTTTATTTTTC
15172700 TTTTATTTTTATTTTT
1 TTTTATTTTTATTTTT
15172716 AAAAACTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.03, G:0.00, T:0.85
Consensus pattern (17 bp):
TTTTATTTTTATTTTTC
Found at i:15173346 original size:3 final size:3
Alignment explanation
Indices: 15173317--15173380 Score: 60
Period size: 3 Copynumber: 21.3 Consensus size: 3
15173307 TGTAGCATTT
* *
15173317 TTA TTA TT- TTG TTCA TTA TT- CTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
15173361 TTTA ATA TTA TTG TTA TTA T
1 -TTA TTA TTA TTA TTA TTA T
15173381 CATCGTATTT
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
2 3 0.06
3 42 0.84
4 5 0.10
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:15173354 original size:20 final size:20
Alignment explanation
Indices: 15173318--15173356 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
15173308 GTAGCATTTT
*
15173318 TATTATTTTGTTCATTATTC
1 TATTATTTTATTCATTATTC
15173338 TATTATTATTATT-ATTATT
1 TATTATT-TTATTCATTATT
15173357 ATTATTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.67
Consensus pattern (20 bp):
TATTATTTTATTCATTATTC
Found at i:15177562 original size:8 final size:8
Alignment explanation
Indices: 15177549--15177605 Score: 69
Period size: 8 Copynumber: 6.8 Consensus size: 8
15177539 GACTCGAAAG
15177549 AAAAATAA
1 AAAAATAA
15177557 AAAAATAAA
1 AAAAAT-AA
*
15177566 AAAAATCA
1 AAAAATAA
15177574 AAAAATAAA
1 AAAAAT-AA
*
15177583 AAAAAAATA
1 AAAAATA-A
15177592 AAAAATAA
1 AAAAATAA
15177600 AAAAAT
1 AAAAAT
15177606 CAATGTCAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
8 21 0.50
9 21 0.50
ACGTcount: A:0.86, C:0.02, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAAATAA
Found at i:15177571 original size:17 final size:17
Alignment explanation
Indices: 15177549--15177604 Score: 85
Period size: 17 Copynumber: 3.2 Consensus size: 17
15177539 GACTCGAAAG
15177549 AAAAATAAAAAAATAAA
1 AAAAATAAAAAAATAAA
*
15177566 AAAAATCAAAAAATAAA
1 AAAAATAAAAAAATAAA
*
15177583 AAAAAAATAAAAAATAAA
1 AAAAATA-AAAAAATAAA
15177601 AAAA
1 AAAA
15177605 TCAATGTCAA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
17 21 0.60
18 14 0.40
ACGTcount: A:0.88, C:0.02, G:0.00, T:0.11
Consensus pattern (17 bp):
AAAAATAAAAAAATAAA
Found at i:15177631 original size:6 final size:6
Alignment explanation
Indices: 15177622--15177660 Score: 53
Period size: 6 Copynumber: 6.3 Consensus size: 6
15177612 CAAAAATAGG
15177622 AGAAAA AGAAAGA AGAAAA A-AGAAA AGAAAA AGAAAA AG
1 AGAAAA AGAAA-A AGAAAA AGA-AAA AGAAAA AGAAAA AG
15177661 GAGAAGTCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
5 1 0.03
6 22 0.73
7 7 0.23
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (6 bp):
AGAAAA
Found at i:15178684 original size:9 final size:9
Alignment explanation
Indices: 15178653--15178705 Score: 54
Period size: 9 Copynumber: 5.9 Consensus size: 9
15178643 ACAAAAAAAC
15178653 AAAAGAAAG
1 AAAAGAAAG
*
15178662 -AAAGAAAA
1 AAAAGAAAG
15178670 AAAAGAAAG
1 AAAAGAAAG
*
15178679 AGAAGAAAG
1 AAAAGAAAG
**
15178688 AGGAGAAGAG
1 AAAAGAA-AG
15178698 AAAAGAAA
1 AAAAGAAA
15178706 AGGAAAAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
8 7 0.19
9 22 0.61
10 7 0.19
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (9 bp):
AAAAGAAAG
Found at i:15178858 original size:43 final size:44
Alignment explanation
Indices: 15178788--15178904 Score: 132
Period size: 43 Copynumber: 2.7 Consensus size: 44
15178778 CCCAAAAAGG
* *
15178788 GCGACTCAAATTTTGGAACAAAATGGGGCA-CGAAGTGATCAGA
1 GCGACTCAAATTTTGGATCAAATTGGGGCATCGAAGTGATCAGA
* * **
15178831 GCGACTTAAATTTTGGATCAAATTGGGGCATGGTGGTGATCAGA
1 GCGACTCAAATTTTGGATCAAATTGGGGCATCGAAGTGATCAGA
* *
15178875 G-TAGCTCAAATTTT-GATCAGATTGGGGCAT
1 GCGA-CTCAAATTTTGGATCAAATTGGGGCAT
15178905 ATGATGATCT
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
43 43 0.68
44 20 0.32
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.26
Consensus pattern (44 bp):
GCGACTCAAATTTTGGATCAAATTGGGGCATCGAAGTGATCAGA
Found at i:15180153 original size:50 final size:50
Alignment explanation
Indices: 15180029--15181829 Score: 870
Period size: 50 Copynumber: 36.1 Consensus size: 50
15180019 AAAACCATAG
* * ** * * * *
15180029 ATTGCAATTCAAAAGATTGAAGCCACAACGGTAAATCTCACCTCCCTGGC
1 ATTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC
** * * * *
15180079 GA-TGC-AGCGAAATAGATCGAAGCTACAATGGTGAATCTCACTTCCCCGAC
1 -ATTGCAATTGAAA-AGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC
* * * * * *
15180129 ATTGTAATTTAAAAGATTGAAGCTACAACAGCGAATCTCACCTCCCTGAC
1 ATTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC
* * * * *
15180179 GA-TGCAGTGGAACAGATTGAAGCTACAACAGTGAATCTTACTTCCCCGAC
1 -ATTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC
* * * * * *
15180229 ATTGCAATTCAAAAGATTGAAG-TCACAACGACAAATCTCA-TTTCCCTAGC
1 ATTGCAATTGAAAAGATTGAAGCT-ACAACGGCGAATCTTACTTCCCCGA-C
*** * *
15180279 GA-TGCAGCAGAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCCGAC
1 -ATTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC
** * * * * * * *
15180329 ATTTTAATTTAAAAGATCGAAGCCACAATGGTGAATCTTATTTCCCATG-C
1 ATTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCC-CGAC
* * * * * * *
15180379 AGTGCAGTTGAACAGATTGAAGCTACAACAGAGGATCTTACTTCCTCGAC
1 ATTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC
* * * * * * * *
15180429 ATTGCAATTTAAAAGATCGAAGCCACAACGGTGAGTCTTATTTCCCAGGC
1 ATTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC
* * * * * * *
15180479 AGTGCAGTTGAACAGATTGAAGCTACAACAGCGGATCTTGCTTCCTCGAC
1 ATTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC
* * * * * * * *
15180529 ATTGCAATTTAAAAGATCGAAGCCACAACGGTGAGTCTTATTTCCCAGGC
1 ATTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC
* * * * * * * *
15180579 AGTACAGTTGAATAGATTGAAGCTACAACAGCGGATCTTGCTTCCTCGAC
1 ATTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC
* * * * ** * * *
15180629 ATTGCAATTTAAAAGATCGAAGCCACAATGGTAAATCTTATTTCCCAGGC
1 ATTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC
** * * * *
15180679 GA-TGCAACAGAACAGATTGAAGCTACGACGGCGAATATCACTTCCCCGAC
1 -ATTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC
* * * *
15180729 ATTGCAATTCG-AAAGATTGAAGCCACAACGACGAATCTTACTTCCCAGGC
1 ATTGCAATT-GAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC
*** * * * * *
15180779 GA-TGCAGCAGAACAGATTGAAGCCACAACGGCAAATCTTACTTCCCAGGC
1 -ATTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC
** * * * * * *
15180829 GA-TGCAACGGAACATATTGAAGCTACGACGACGAATCTCACTTTCCCGAC
1 -ATTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC
* * * * * * * * *
15180879 ATTACATTTTTAAAAGATTGAATCCACAACGGTGAATCTTACTTCTCAGGC
1 ATTGCA-ATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC
*** * * * *
15180930 GA-TGCAGCGGAAAAGATTGAAGCTACGATGGCAAATCTCACTTCCCCGAC
1 -ATTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC
* * * **
15180980 ATTGCAACTT-AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCAGGTG
1 ATTGCAA-TTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCC-CGAC
* *** * * * * * *
15181031 A-TGTAGCGGAACATATTGAAGCTACGACGGCGAATCTCACATCCCCTAC
1 ATTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC
* * * * **
15181080 ATTGCAATTTAAAAGAATGAAGCCACAACGGCGAATCTTACTTCCCAGGTG
1 ATTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCC-CGAC
*** * * ** * *
15181131 A-TGCAGCGGAACAGATTGATGCTATGACGGC-AGATCTCACTTCGCCGAC
1 ATTGCAATTGAAAAGATTGAAGCTACAACGGCGA-ATCTTACTTCCCCGAC
* * * * * *
15181180 AGTGCAATTAAAAAGATTGAAGC-A-AACGACGAATCTTACCTT-TCAGGC
1 ATTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTA-CTTCCCCGAC
*** * * **
15181228 GA-TGCAGCGGAATAGATTGAAGCTACAATGGCGAATCACACTTCCCCGAC
1 -ATTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC
* * * * * *
15181278 ATTGCAATTAAAAATATTGAAGCTACAACGGTGAATCTTACCTT-TCAGGC
1 ATTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTA-CTTCCCCGAC
** *** * * * *
15181328 GGTGCAGCGGAATAGATTGAAGATACAACGGCGAATCCTACTTCCCTGAC
1 ATTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC
* * * * * * *
15181378 ACTGCAATTTAAAAGATTGAGGCCACAACGACGAATCTTACTT-CCAGGC
1 ATTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC
** * * ** * *
15181427 GA-TGCAACGGAACAGATTGAAGCTATAATAGCGAATCATGCTTCCCCGAC
1 -ATTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC
* * * * *
15181477 ATTGCAATTAAAAAGATTGAGGCCACAACGGCGAATCTTACTT-CCAGGC
1 ATTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC
* *** * * * *
15181526 AATGCAGCGGAACAGATTGAAGCTACAACGACGAATCATGCTTCCCCGAC
1 ATTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC
* * * * * * * * *
15181576 ACTGCAATTTAAAATATTGAGGCCACAATGGTGAATCTTACTT-CCAGGC
1 ATTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC
** * * * *
15181625 GA-TGCAACGGAACAGATTGAAGCTACAACAGCGAATCCTGCTTCCCCGAC
1 -ATTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC
* * * ** ** *
15181675 ATTGCAATTAAAAAGATTGAGGCCACAACGATGAATCTTACTT-CAAGGC
1 ATTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC
*** * * * * *
15181724 GA-TGCAGCAGAACAA-ATTGAAGCTACAACAGTGAATCCTGCTTCCCCAAC
1 -ATTGCAATTGAA-AAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC
* * * * * *
15181774 ATTGCAATTTAATAGATTGAAGCTACGACGACAAATCTTACTTCCCTGAC
1 ATTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC
15181824 ATTGCA
1 ATTGCA
15181830 GTTAAACAGA
Statistics
Matches: 1234, Mismatches: 466, Indels: 101
0.69 0.26 0.06
Matches are distributed among these distances:
48 28 0.02
49 174 0.14
50 976 0.79
51 55 0.04
52 1 0.00
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.23
Consensus pattern (50 bp):
ATTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC
Found at i:15181117 original size:251 final size:251
Alignment explanation
Indices: 15180636--15181122 Score: 609
Period size: 251 Copynumber: 1.9 Consensus size: 251
15180626 GACATTGCAA
* * *
15180636 TTTAAAAGATCGAAGCCACAATGGTAAATCTTATTTCCCAGGCGATGCAACAGAACAGATTGAAG
1 TTTAAAAGATCGAAGCCACAACGGTAAATCTTACTTCCCAGGCGATGCAACAGAAAAGATTGAAG
* *
15180701 CTACGACGGCGAATATCACTTCCCCGACATTGCAATTCGAAAGATTGAAGCCACAACGACGAATC
66 CTACGACGGCAAATATCACTTCCCCGACATTGCAATTCAAAAGATTGAAGCCACAACGACGAATC
* * *
15180766 TTACTTCCCAGGCGATGCAGCAGAACAGATTGAAGCCACAACGGCAAATCTTACTTCCCAGGCGA
131 TTACTTCCCAGGCGATGCAGCAGAACAGATTGAAGCCACAACGGCAAATCTCACATCCCAGACGA
* * * * *
15180831 TGCAACGGAACATATTGAAGCTACGACGACGAATCTCACTTTCCCGACATTACATT
196 TGCAACGGAAAAGAATGAAGCCACAACGACGAATCTCACTTTCCCGACATTACATT
* * * * * *
15180887 TTTAAAAGATTGAATCCACAACGGTGAATCTTACTTCTCAGGCGATGCAGCGGAAAAGATTGAAG
1 TTTAAAAGATCGAAGCCACAACGGTAAATCTTACTTCCCAGGCGATGCAACAGAAAAGATTGAAG
* * **
15180952 CTACGATGGCAAATCTCACTTCCCCGACATTGCAACTT-AAAAGATTGAAGCCACAACGGTGAAT
66 CTACGACGGCAAATATCACTTCCCCGACATTGCAA-TTCAAAAGATTGAAGCCACAACGACGAAT
* * * * * * * **
15181016 CTTACTTCCCAGGTGATGTAGCGGAACATATTGAAGCTACGACGGCGAATCTCACATCCCCTAC-
130 CTTACTTCCCAGGCGATGCAGCAGAACAGATTGAAGCCACAACGGCAAATCTCACATCCCAGACG
*** * *
15181080 ATTGCAATTTAAAAGAATGAAGCCACAACGGCGAATCTTACTT
195 A-TGCAACGGAAAAGAATGAAGCCACAACGACGAATCTCACTT
15181123 CCCAGGTGAT
Statistics
Matches: 197, Mismatches: 37, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
250 1 0.01
251 194 0.98
252 2 0.01
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (251 bp):
TTTAAAAGATCGAAGCCACAACGGTAAATCTTACTTCCCAGGCGATGCAACAGAAAAGATTGAAG
CTACGACGGCAAATATCACTTCCCCGACATTGCAATTCAAAAGATTGAAGCCACAACGACGAATC
TTACTTCCCAGGCGATGCAGCAGAACAGATTGAAGCCACAACGGCAAATCTCACATCCCAGACGA
TGCAACGGAAAAGAATGAAGCCACAACGACGAATCTCACTTTCCCGACATTACATT
Found at i:15181201 original size:351 final size:349
Alignment explanation
Indices: 15180536--15181215 Score: 853
Period size: 351 Copynumber: 1.9 Consensus size: 349
15180526 GACATTGCAA
* * ** *
15180536 TTTAAAAGATCGAAGCCACAACGGTGAGTCTTATTTCCCAGGCAGTACAGTTGAATAGATTGAAG
1 TTTAAAAGATCGAAGCCACAACGGTGAATCTTACTTCCCAGGCAGTACAGCGGAAAAGATTGAAG
** ** * * *
15180601 CTACAACAGCGGATCTTGCTTCCTCGACATTGCAATTTAAAAGATCGAAGCCACAATGGTAAATC
66 CTACAACAGCAAATCTCACTTCCCCGACATTGCAACTTAAAAGATCGAAGCCACAACGGTAAATC
* *
15180666 TTATTTCCCAGGCGATGCAACAGAACAGATTGAAGCTACGACGGCGAATATCACTTCCCCGACAT
131 TTACTTCCCAGGCGATGCAACAGAACAGATTGAAGCTACGACGGCGAATATCACATCCCCGACAT
* *
15180731 TGCAATTCGAAAGATTGAAGCCACAACGACGAATCTTACTTCCCAGGCGATGCAGCAGAACAGAT
196 TGCAATTCAAAAGAATGAAGCCACAACGACGAATCTTACTTCCCAGGCGATGCAGCAGAACAGAT
* * * * * *
15180796 TGAAGCCACAACGGCAAATCTTACTTCCCAGGCGATGCAACGGAACATATTGAAGCTACGACGAC
261 TGAAGCCACAACGGCAAATCTCACTTCCCAGACGATGCAACGAAAAAGATTGAAGC-A-AACGAC
15180861 GAATCTCACTTTCCCGACATTACATT
324 GAATCTCACTTTCCCGACATTACATT
* * * *
15180887 TTTAAAAGATTGAATCCACAACGGTGAATCTTACTTCTCAGGC-GATGCAGCGGAAAAGATTGAA
1 TTTAAAAGATCGAAGCCACAACGGTGAATCTTACTTCCCAGGCAG-TACAGCGGAAAAGATTGAA
* ** * *
15180951 GCTACGATGGCAAATCTCACTTCCCCGACATTGCAACTTAAAAGATTGAAGCCACAACGGTGAAT
65 GCTACAACAGCAAATCTCACTTCCCCGACATTGCAACTTAAAAGATCGAAGCCACAACGGTAAAT
* * * * * * *
15181016 CTTACTTCCCAGGTGATGTAGCGGAACATATTGAAGCTACGACGGCGAATCTCACATCCCCTACA
130 CTTACTTCCCAGGCGATGCAACAGAACAGATTGAAGCTACGACGGCGAATATCACATCCCCGACA
* * * *
15181081 TTGCAATTTAAAAGAATGAAGCCACAACGGCGAATCTTACTTCCCAGGTGATGCAGCGGAACAGA
195 TTGCAATTCAAAAGAATGAAGCCACAACGACGAATCTTACTTCCCAGGCGATGCAGCAGAACAGA
* * ** * **
15181146 TTGATGCTATGACGGCAGATCTCACTTCGCC-GAC-AGTGCAATTAAAAAGATTGAAGCAAACGA
260 TTGAAGCCACAACGGCAAATCTCACTTC-CCAGACGA-TGCAACGAAAAAGATTGAAGCAAACGA
15181209 CGAATCT
323 CGAATCT
15181216 TACCTTTCAG
Statistics
Matches: 277, Mismatches: 49, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
349 11 0.04
350 3 0.01
351 261 0.94
352 2 0.01
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.23
Consensus pattern (349 bp):
TTTAAAAGATCGAAGCCACAACGGTGAATCTTACTTCCCAGGCAGTACAGCGGAAAAGATTGAAG
CTACAACAGCAAATCTCACTTCCCCGACATTGCAACTTAAAAGATCGAAGCCACAACGGTAAATC
TTACTTCCCAGGCGATGCAACAGAACAGATTGAAGCTACGACGGCGAATATCACATCCCCGACAT
TGCAATTCAAAAGAATGAAGCCACAACGACGAATCTTACTTCCCAGGCGATGCAGCAGAACAGAT
TGAAGCCACAACGGCAAATCTCACTTCCCAGACGATGCAACGAAAAAGATTGAAGCAAACGACGA
ATCTCACTTTCCCGACATTACATT
Found at i:15181483 original size:99 final size:98
Alignment explanation
Indices: 15180792--15181818 Score: 1142
Period size: 99 Copynumber: 10.3 Consensus size: 98
15180782 GCAGCAGAAC
* * * *
15180792 AGATTGAAGCCACAACGGCAAATCTTACTTCCCAGGCGATGCAACGGAACATATTGAAGCTACGA
1 AGATTGAAGCCACAACGGCGAATCTTACTT-CCAGGCGATGCAGCGGAACAGATTGAAGCTACAA
* * * *
15180857 CGACGAATCTCACTTTCCCGACATTACATTTTTAAA
65 CGGCGAATCT-ACTTCCCCGACATTGCA-ATTTAAA
* * * *
15180893 AGATTGAATCCACAACGGTGAATCTTACTTCTCAGGCGATGCAGCGGAAAAGATTGAAGCTACGA
1 AGATTGAAGCCACAACGGCGAATCTTACTTC-CAGGCGATGCAGCGGAACAGATTGAAGCTACAA
* * *
15180958 TGGCAAATCTCACTTCCCCGACATTGCAACTTAAA
65 CGGCGAATCT-ACTTCCCCGACATTGCAATTTAAA
* * * * *
15180993 AGATTGAAGCCACAACGGTGAATCTTACTTCCCAGGTGATGTAGCGGAACATATTGAAGCTACGA
1 AGATTGAAGCCACAACGGCGAATCTTACTT-CCAGGCGATGCAGCGGAACAGATTGAAGCTACAA
* *
15181058 CGGCGAATCTCACATCCCCTACATTGCAATTTAAA
65 CGGCGAATCT-ACTTCCCCGACATTGCAATTTAAA
* * * **
15181093 AGAATGAAGCCACAACGGCGAATCTTACTTCCCAGGTGATGCAGCGGAACAGATTGATGCTATGA
1 AGATTGAAGCCACAACGGCGAATCTTACTT-CCAGGCGATGCAGCGGAACAGATTGAAGCTACAA
* * *
15181158 CGGC-AGATCTCACTTCGCCGACAGTGCAATTAAAA
65 CGGCGA-ATCT-ACTTCCCCGACATTGCAATTTAAA
* * *
15181193 AGATTGAAG-CA-AACGACGAATCTTACCTTTCAGGCGATGCAGCGGAATAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTA-CTTCCAGGCGATGCAGCGGAACAGATTGAAGCTACAA
* * *
15181256 TGGCGAATCACACTTCCCCGACATTGCAATTAAAA
65 CGGCGAATC-TACTTCCCCGACATTGCAATTTAAA
* * * * * * *
15181291 ATATTGAAGCTACAACGGTGAATCTTACCTTTCAGGCGGTGCAGCGGAATAGATTGAAGATACAA
1 AGATTGAAGCCACAACGGCGAATCTTA-CTTCCAGGCGATGCAGCGGAACAGATTGAAGCTACAA
* *
15181356 CGGCGAATCCTACTTCCCTGACACTGCAATTTAAA
65 CGGCGAAT-CTACTTCCCCGACATTGCAATTTAAA
* * * * *
15181391 AGATTGAGGCCACAACGACGAATCTTACTTCCAGGCGATGCAACGGAACAGATTGAAGCTATAAT
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGATTGAAGCTACAAC
* * *
15181456 AGCGAATCATGCTTCCCCGACATTGCAATTAAAA
66 GGCGAATC-TACTTCCCCGACATTGCAATTTAAA
* *
15181490 AGATTGAGGCCACAACGGCGAATCTTACTTCCAGGCAATGCAGCGGAACAGATTGAAGCTACAAC
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGATTGAAGCTACAAC
* * *
15181555 GACGAATCATGCTTCCCCGACACTGCAATTTAAA
66 GGCGAATC-TACTTCCCCGACATTGCAATTTAAA
* * * * *
15181589 ATATTGAGGCCACAATGGTGAATCTTACTTCCAGGCGATGCAACGGAACAGATTGAAGCTACAAC
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGATTGAAGCTACAAC
* * *
15181654 AGCGAATCCTGCTTCCCCGACATTGCAATTAAAA
66 GGCGAAT-CTACTTCCCCGACATTGCAATTTAAA
* ** * * *
15181688 AGATTGAGGCCACAACGATGAATCTTACTTCAAGGCGATGCAGCAGAACAAATTGAAGCTACAAC
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGATTGAAGCTACAAC
* * * * *
15181753 AGTGAATCCTGCTTCCCCAACATTGCAATTTAAT
66 GGCGAAT-CTACTTCCCCGACATTGCAATTTAAA
* * * *
15181787 AGATTGAAGCTACGACGACAAATCTTACTTCC
1 AGATTGAAGCCACAACGGCGAATCTTACTTCC
15181819 CTGACATTGC
Statistics
Matches: 806, Mismatches: 109, Indels: 24
0.86 0.12 0.03
Matches are distributed among these distances:
98 78 0.10
99 358 0.44
100 288 0.36
101 82 0.10
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.22
Consensus pattern (98 bp):
AGATTGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGATTGAAGCTACAAC
GGCGAATCTACTTCCCCGACATTGCAATTTAAA
Found at i:15182055 original size:95 final size:95
Alignment explanation
Indices: 15181920--15182115 Score: 304
Period size: 95 Copynumber: 2.1 Consensus size: 95
15181910 CCTAAGTGGA
* *
15181920 GAAGATCGAAGATGGCAGATTTTACCTCCCTGAGGCTACAGTGGAGTACATTGAAGCC-GATAAT
1 GAAGATCGAAGATGACAGATTTTACCTCCCTGAGACTACAGTGGAGTACATTGAAGCCAG-TAAT
* *
15181984 TCTATTTCCCTGGTTGGCAGTGGAATAGATT
65 TCTATCTCCCTGGTTGGCAGTGCAATAGATT
* *
15182015 GAAGATCGAAGATGACAGATTTTACCTCCCTGTGACTACAGTGGAGTATATTGAAGCCAGTAATT
1 GAAGATCGAAGATGACAGATTTTACCTCCCTGAGACTACAGTGGAGTACATTGAAGCCAGTAATT
**
15182080 CTATCTCTTTGGTTGGCAGTGCAATAGATT
66 CTATCTCCCTGGTTGGCAGTGCAATAGATT
15182110 GAAGAT
1 GAAGAT
15182116 TTCAGATCTT
Statistics
Matches: 92, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
95 91 0.99
96 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.30
Consensus pattern (95 bp):
GAAGATCGAAGATGACAGATTTTACCTCCCTGAGACTACAGTGGAGTACATTGAAGCCAGTAATT
CTATCTCCCTGGTTGGCAGTGCAATAGATT
Found at i:15183655 original size:3 final size:3
Alignment explanation
Indices: 15183626--15183689 Score: 60
Period size: 3 Copynumber: 21.3 Consensus size: 3
15183616 TGTAGCATTT
* *
15183626 TTA TTA TT- TTG TTCA TTA TT- CTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
15183670 TTTA ATA TTA TTG TTA TTA T
1 -TTA TTA TTA TTA TTA TTA T
15183690 CATCGTATTT
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
2 3 0.06
3 42 0.84
4 5 0.10
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:15183663 original size:20 final size:20
Alignment explanation
Indices: 15183627--15183665 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
15183617 GTAGCATTTT
*
15183627 TATTATTTTGTTCATTATTC
1 TATTATTTTATTCATTATTC
15183647 TATTATTATTATT-ATTATT
1 TATTATT-TTATTCATTATT
15183666 ATTATTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.67
Consensus pattern (20 bp):
TATTATTTTATTCATTATTC
Found at i:15183981 original size:17 final size:18
Alignment explanation
Indices: 15183946--15183984 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
15183936 TCATATGTCC
15183946 ATTTTTATGTTTTAGTTT
1 ATTTTTATGTTTTAGTTT
15183964 ATTTTTAT-TATTTA-TTT
1 ATTTTTATGT-TTTAGTTT
15183981 ATTT
1 ATTT
15183985 GCTATGGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (18 bp):
ATTTTTATGTTTTAGTTT
Found at i:15187617 original size:32 final size:32
Alignment explanation
Indices: 15187581--15187738 Score: 183
Period size: 32 Copynumber: 5.0 Consensus size: 32
15187571 GCCATAAGTT
* * * ** *
15187581 TAGTAATATGATTGGCATAAAGCCATCAGCAG
1 TAGTAATATGATCGACACAAAGCCATCAATAA
* * * * *
15187613 TAGTAATACGATCGTCACACATCCATCAGTAA
1 TAGTAATATGATCGACACAAAGCCATCAATAA
*
15187645 TAGTAATATGATCGACACAAAGCCATCAATAG
1 TAGTAATATGATCGACACAAAGCCATCAATAA
*
15187677 TAGTAATATGATCGACACAAA-CTATCAATAA
1 TAGTAATATGATCGACACAAAGCCATCAATAA
*
15187708 TAGTAATATGATCGGCACAAAGCCATCAATA
1 TAGTAATATGATCGACACAAAGCCATCAATA
15187739 GCATCGCAGC
Statistics
Matches: 107, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
31 28 0.26
32 79 0.74
ACGTcount: A:0.42, C:0.19, G:0.15, T:0.24
Consensus pattern (32 bp):
TAGTAATATGATCGACACAAAGCCATCAATAA
Found at i:15187730 original size:63 final size:64
Alignment explanation
Indices: 15187581--15187739 Score: 221
Period size: 64 Copynumber: 2.5 Consensus size: 64
15187571 GCCATAAGTT
* * ** * * *
15187581 TAGTAATATGATTGGCATAAAGCCATCAGCAGTAGTAATACGATCGTCACACATCCATCAGTAA
1 TAGTAATATGATCGGCACAAAGCCATCAATAGTAGTAATACGATCGACACACAACCATCAATAA
* * *
15187645 TAGTAATATGATCGACACAAAGCCATCAATAGTAGTAATATGATCGACACA-AACTATCAATAA
1 TAGTAATATGATCGGCACAAAGCCATCAATAGTAGTAATACGATCGACACACAACCATCAATAA
15187708 TAGTAATATGATCGGCACAAAGCCATCAATAG
1 TAGTAATATGATCGGCACAAAGCCATCAATAG
15187740 CATCGCAGCA
Statistics
Matches: 84, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
63 40 0.48
64 44 0.52
ACGTcount: A:0.42, C:0.19, G:0.16, T:0.24
Consensus pattern (64 bp):
TAGTAATATGATCGGCACAAAGCCATCAATAGTAGTAATACGATCGACACACAACCATCAATAA
Found at i:15187765 original size:26 final size:26
Alignment explanation
Indices: 15187729--15187778 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15187719 TCGGCACAAA
*
15187729 GCCATCAATAGCATCGCAGCAAAGCT
1 GCCAACAATAGCATCGCAGCAAAGCT
*
15187755 GCCAACAATAGTATCGCAGCAAAG
1 GCCAACAATAGCATCGCAGCAAAG
15187779 TTGCTAGTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.38, C:0.28, G:0.20, T:0.14
Consensus pattern (26 bp):
GCCAACAATAGCATCGCAGCAAAGCT
Found at i:15187813 original size:27 final size:27
Alignment explanation
Indices: 15187782--15187846 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
15187772 AGCAAAGTTG
* *
15187782 CTAGTAACAGT-ATATGTTGCCAAGCCA
1 CTAGTAACAGTGAT-TGTGGCAAAGCCA
15187809 CTAGTAACAGTGATTGTGGCAAAGCCA
1 CTAGTAACAGTGATTGTGGCAAAGCCA
*
15187836 CCAGT-ACAGTG
1 CTAGTAACAGTG
15187847 CTTCCTCCAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 6 0.18
27 26 0.76
28 2 0.06
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.23
Consensus pattern (27 bp):
CTAGTAACAGTGATTGTGGCAAAGCCA
Done.