Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43060996
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2186021 characters in sequence are not A, C, G, or T
File 59 of 128
Found at i:18744280 original size:29 final size:28
Alignment explanation
Indices: 18744247--18744304 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 28
18744237 TACTCTAAAT
*
18744247 AATGTCCTTTGTGG-CAACCATCCAAAGAA
1 AATGT-CTCTGTGGTCAA-CATCCAAAGAA
*
18744276 AATGTCTCTGTGGTGAACATCCAAAGAA
1 AATGTCTCTGTGGTCAACATCCAAAGAA
18744304 A
1 A
18744305 TGGCATTCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 19 0.73
29 7 0.27
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (28 bp):
AATGTCTCTGTGGTCAACATCCAAAGAA
Found at i:18745473 original size:45 final size:45
Alignment explanation
Indices: 18745424--18745536 Score: 145
Period size: 45 Copynumber: 2.5 Consensus size: 45
18745414 TCATGGTGTT
* * *
18745424 TTTCAGCCATGGTCTTACTCATTTCCGTCATGATGCCATAGCATC
1 TTTCAGCTATGGTCTTACTCATTTCCATCATGACGCCATAGCATC
* * * ** *
18745469 TTTCAACTATGTTCTTTCTCATTTTTATCATGACGCCATAGTATC
1 TTTCAGCTATGGTCTTACTCATTTCCATCATGACGCCATAGCATC
18745514 TTTCAGCTATGGTCTTACTCATT
1 TTTCAGCTATGGTCTTACTCATT
18745537 CTTAGACAAA
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 56 1.00
ACGTcount: A:0.20, C:0.25, G:0.12, T:0.42
Consensus pattern (45 bp):
TTTCAGCTATGGTCTTACTCATTTCCATCATGACGCCATAGCATC
Found at i:18753713 original size:18 final size:17
Alignment explanation
Indices: 18753690--18753760 Score: 63
Period size: 17 Copynumber: 4.0 Consensus size: 17
18753680 AATGATAAAG
*
18753690 ATTCAATATTATTAAATA
1 ATTCAATAATA-TAAATA
18753708 ATTCAATAATATAAATA
1 ATTCAATAATATAAATA
* * *
18753725 GTACAA-AATGTGAAATTTA
1 ATTCAATAATAT-AAA--TA
18753744 ATTCAATAATATAAATA
1 ATTCAATAATATAAATA
18753761 GTAGATATAA
Statistics
Matches: 42, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
16 4 0.10
17 15 0.36
18 10 0.24
19 9 0.21
20 4 0.10
ACGTcount: A:0.54, C:0.06, G:0.04, T:0.37
Consensus pattern (17 bp):
ATTCAATAATATAAATA
Found at i:18756890 original size:6 final size:6
Alignment explanation
Indices: 18756879--18756929 Score: 65
Period size: 6 Copynumber: 9.2 Consensus size: 6
18756869 TCTGCCTAAC
*
18756879 AAAAAG AAAAAG AAAAAG AAAAAG -AAAAG -AAAAG -GAAAG -AAAAG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
18756923 AAAAAG A
1 AAAAAG A
18756930 CGACATTTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
5 18 0.43
6 24 0.57
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:18756894 original size:5 final size:5
Alignment explanation
Indices: 18756880--18756926 Score: 58
Period size: 5 Copynumber: 8.8 Consensus size: 5
18756870 CTGCCTAACA
*
18756880 AAAAG AAAAAG AAAAAG AAAAAG AAAAG AAAAG GAAAG AAAAG AAAA
1 AAAAG -AAAAG -AAAAG -AAAAG AAAAG AAAAG AAAAG AAAAG AAAA
18756927 AGACGACATT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
5 22 0.56
6 17 0.44
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:18758367 original size:31 final size:30
Alignment explanation
Indices: 18758294--18758369 Score: 82
Period size: 31 Copynumber: 2.5 Consensus size: 30
18758284 AAAACTTTTT
* *
18758294 TTAAGAAAGTTTAATTAAAATTTTCAAAAA
1 TTAAAAAAGTATAATTAAAATTTTCAAAAA
*
18758324 TTAAAAAGAGTATAATTAAAATATTTTAAAAA
1 TTAAAAA-AGTATAATTAAAAT-TTTCAAAAA
*
18758356 CTT-TAAAAGTATAA
1 -TTAAAAAAGTATAA
18758370 AATTTTGAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
30 6 0.15
31 20 0.51
32 11 0.28
33 2 0.05
ACGTcount: A:0.55, C:0.03, G:0.07, T:0.36
Consensus pattern (30 bp):
TTAAAAAAGTATAATTAAAATTTTCAAAAA
Found at i:18758413 original size:8 final size:8
Alignment explanation
Indices: 18758391--18758431 Score: 55
Period size: 8 Copynumber: 4.9 Consensus size: 8
18758381 TAATTATTTT
18758391 TTTTAAAA
1 TTTTAAAA
18758399 TTTTTTAAAA
1 --TTTTAAAA
*
18758409 ATTTAAAA
1 TTTTAAAA
18758417 TTTTAAAA
1 TTTTAAAA
18758425 TTTTAAA
1 TTTTAAA
18758432 GTGCAAACTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 21 0.72
10 8 0.28
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (8 bp):
TTTTAAAA
Found at i:18759284 original size:30 final size:30
Alignment explanation
Indices: 18759214--18759282 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
18759204 AAAATTTTTA
* *
18759214 ATAAAAATTACTAATTTATTCATTTATTTAAT
1 ATAAAAA--ACTAATTTATCCATTTATTAAAT
*
18759246 ATACAAAACTAATTTATCCATTTATTAAAT
1 ATAAAAAACTAATTTATCCATTTATTAAAT
18759276 -TAAAAAA
1 ATAAAAAA
18759283 ACAAAATACA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 6 0.18
30 21 0.64
32 6 0.18
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.42
Consensus pattern (30 bp):
ATAAAAAACTAATTTATCCATTTATTAAAT
Found at i:18760569 original size:16 final size:17
Alignment explanation
Indices: 18760548--18760581 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
18760538 AAAGTATTTT
18760548 AGTCAATTTT-GGTTTA
1 AGTCAATTTTGGGTTTA
18760564 AGTCAATTTTGGGTTTA
1 AGTCAATTTTGGGTTTA
18760581 A
1 A
18760582 AGTTAATAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.26, C:0.06, G:0.21, T:0.47
Consensus pattern (17 bp):
AGTCAATTTTGGGTTTA
Found at i:18768213 original size:25 final size:25
Alignment explanation
Indices: 18768181--18768238 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
18768171 TTACCGATTC
*
18768181 TCAGCTCGAGAAAGCTTAATGATAT
1 TCAGCTCGAGAAAGCTTAACGATAT
* *
18768206 TCAGCTCGAGAGAGCTTACCGATAT
1 TCAGCTCGAGAAAGCTTAACGATAT
18768231 TCAGCTCG
1 TCAGCTCG
18768239 CATGAGCTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (25 bp):
TCAGCTCGAGAAAGCTTAACGATAT
Found at i:18768245 original size:25 final size:24
Alignment explanation
Indices: 18768171--18768278 Score: 85
Period size: 25 Copynumber: 4.3 Consensus size: 24
18768161 GTCATTAAGG
18768171 TTACCGAT-TCTCAGCTCGA-GAAAGC
1 TTACCGATAT-TCAGCTCGATG--AGC
** *
18768196 TTAATGATATTCAGCTCGAGAGAGC
1 TTACCGATATTCAGCTCGA-TGAGC
18768221 TTACCGATATTCAGCTCGCATGAGC
1 TTACCGATATTCAGCTCG-ATGAGC
* ** *
18768246 TTACCGTTACACAGCTCATATGAGC
1 TTACCGATATTCAGCTC-GATGAGC
18768271 TTACCGAT
1 TTACCGAT
18768279 TACAACTCAT
Statistics
Matches: 68, Mismatches: 10, Indels: 10
0.77 0.11 0.11
Matches are distributed among these distances:
25 65 0.96
26 2 0.03
27 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (24 bp):
TTACCGATATTCAGCTCGATGAGC
Found at i:18768294 original size:24 final size:25
Alignment explanation
Indices: 18768242--18768294 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
18768232 CAGCTCGCAT
*
18768242 GAGCTTACCGTTACACAGCTCATAT
1 GAGCTTACCGTTACACAGCTCATAA
18768267 GAGCTTACCGATTACA-A-CTCATAA
1 GAGCTTACCG-TTACACAGCTCATAA
18768291 GAGC
1 GAGC
18768295 ATACTAATTC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 10 0.38
25 11 0.42
26 5 0.19
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (25 bp):
GAGCTTACCGTTACACAGCTCATAA
Found at i:18769098 original size:20 final size:20
Alignment explanation
Indices: 18769055--18769096 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
18769045 TAAAGAAAGT
18769055 AAATGCAATGGAAAGTAATG
1 AAATGCAATGGAAAGTAATG
18769075 AAATGCAAAT-GAAAGTAA-G
1 AAATGC-AATGGAAAGTAATG
18769094 AAA
1 AAA
18769097 ATTTGGAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 14 0.67
21 3 0.14
ACGTcount: A:0.57, C:0.05, G:0.21, T:0.17
Consensus pattern (20 bp):
AAATGCAATGGAAAGTAATG
Found at i:18777814 original size:29 final size:29
Alignment explanation
Indices: 18777782--18778065 Score: 133
Period size: 29 Copynumber: 9.8 Consensus size: 29
18777772 CGATGGCTGT
* *
18777782 AACCGTCCCTTTTCATATTCGATGGTCGA
1 AACCATCCCTTTTCATAATCGATGGTCGA
*
18777811 AACCATCCCTTTTCATTAATCGATGGTCGT
1 AACCATCCCTTTTCA-TAATCGATGGTCGA
* * ** *
18777841 CACCATCCCTTTTCATAGTTAATGGTCGT
1 AACCATCCCTTTTCATAATCGATGGTCGA
* * * * *
18777870 CACCATCCGTTTTCATGATCGATAGCCGA
1 AACCATCCCTTTTCATAATCGATGGTCGA
* * * * * * *
18777899 AGCTATTCCTTTTTATATTCGATAGTCGT
1 AACCATCCCTTTTCATAATCGATGGTCGA
* * * *
18777928 CACCATTCCTTTTCATAGTTGATGGTC-A
1 AACCATCCCTTTTCATAATCGATGGTCGA
* * *
18777956 TCACCAT-CCTTTTCATGATCGATAG-CTGA
1 -AACCATCCCTTTTCATAATCGATGGTC-GA
* * * * * * *
18777985 AGCTATCTCTTTTCATATTTGATAGCCGA
1 AACCATCCCTTTTCATAATCGATGGTCGA
** * * * *
18778014 AATTATTCCTTTTCATAGTCGATAGCCGA
1 AACCATCCCTTTTCATAATCGATGGTCGA
* * *
18778043 AGCTATCCCTTTTCATATTCGAT
1 AACCATCCCTTTTCATAATCGAT
18778066 AATCCCCAAT
Statistics
Matches: 195, Mismatches: 54, Indels: 12
0.75 0.21 0.05
Matches are distributed among these distances:
27 1 0.01
28 17 0.09
29 150 0.77
30 27 0.14
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.38
Consensus pattern (29 bp):
AACCATCCCTTTTCATAATCGATGGTCGA
Found at i:18777836 original size:30 final size:30
Alignment explanation
Indices: 18777782--18777856 Score: 107
Period size: 30 Copynumber: 2.5 Consensus size: 30
18777772 CGATGGCTGT
* *
18777782 AACCGTCCCTTTTCA-TATTCGATGGTCGA
1 AACCATCCCTTTTCATTAATCGATGGTCGA
*
18777811 AACCATCCCTTTTCATTAATCGATGGTCGT
1 AACCATCCCTTTTCATTAATCGATGGTCGA
*
18777841 CACCATCCCTTTTCAT
1 AACCATCCCTTTTCAT
18777857 AGTTAATGGT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 14 0.34
30 27 0.66
ACGTcount: A:0.21, C:0.31, G:0.12, T:0.36
Consensus pattern (30 bp):
AACCATCCCTTTTCATTAATCGATGGTCGA
Found at i:18778009 original size:86 final size:87
Alignment explanation
Indices: 18777818--18778032 Score: 281
Period size: 86 Copynumber: 2.5 Consensus size: 87
18777808 CGAAACCATC
* * * *
18777818 CCTTTTCATTAATCGATGGTCGTCACCATCCCTTTTCATAGTTAATGGTCGTCACCATCCGTTTT
1 CCTTTTCA-TATTCGATAGTCGTCACCATTCCTTTTCATAGTTAATGGTCATCACCATCCGTTTT
18777883 CATGATCGATAGCCGAAGCTATT
65 CATGATCGATAGCCGAAGCTATT
* *
18777906 CCTTTTTATATTCGATAGTCGTCACCATTCCTTTTCATAGTTGATGGTCATCACCATCC-TTTTC
1 CCTTTTCATATTCGATAGTCGTCACCATTCCTTTTCATAGTTAATGGTCATCACCATCCGTTTTC
*
18777970 ATGATCGATAGCTGAAGCTA-T
66 ATGATCGATAGCCGAAGCTATT
* * ** **
18777991 CTCTTTTCATATTTGATAGCCGAAATTATTCCTTTTCATAGT
1 C-CTTTTCATATTCGATAGTCGTCACCATTCCTTTTCATAGT
18778033 CGATAGCCGA
Statistics
Matches: 112, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
85 2 0.02
86 57 0.51
87 46 0.41
88 7 0.06
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (87 bp):
CCTTTTCATATTCGATAGTCGTCACCATTCCTTTTCATAGTTAATGGTCATCACCATCCGTTTTC
ATGATCGATAGCCGAAGCTATT
Found at i:18787803 original size:18 final size:18
Alignment explanation
Indices: 18787780--18787819 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
18787770 CAACGAATGT
18787780 TATTGGAGATTTATAAAA
1 TATTGGAGATTTATAAAA
*
18787798 TATTGGATATTTATAAAA
1 TATTGGAGATTTATAAAA
18787816 TATT
1 TATT
18787820 TTGCTCATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.45
Consensus pattern (18 bp):
TATTGGAGATTTATAAAA
Found at i:18790433 original size:51 final size:49
Alignment explanation
Indices: 18790318--18790505 Score: 207
Period size: 51 Copynumber: 3.7 Consensus size: 49
18790308 GATGGTCATG
* * *
18790318 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGA-ATGATAAGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATA-GAT-TGTCACA
* * * *
18790368 TGTGTAGTACTATGTGTAGGCTACTATGCGTACCGGATAGATTCGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGATT-G-TCACA
* * *
18790419 TGTGTAGTACTATGTGCAGGCTGCTACGTGTATCGGATAGTGATGGTCACA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATA--GATTGTCACA
* *
18790470 TGTGTAGTACTATGTGCAGGCTACTATGTGAACCGG
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG
18790506 TATCATTAAT
Statistics
Matches: 115, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
50 37 0.32
51 74 0.64
52 1 0.01
53 3 0.03
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGATTGTCACA
Found at i:18790505 original size:102 final size:101
Alignment explanation
Indices: 18790317--18790505 Score: 281
Period size: 102 Copynumber: 1.9 Consensus size: 101
18790307 TGATGGTCAT
*
18790317 GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATGATAAGTCGCATGTGTAGTACTATG
1 GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATGATAAGTCACATGTGTAGTACTATG
* *
18790382 TGTAGGCTACTATGCGTACCGGATAGATTCGATCAC
66 TGCAGGCTACTATGCGAACCGGATAGATTCGATCAC
* * * *
18790418 GTGTGTAGTACTATGTGCAGGCTGCTACGTGTATCGGATAGTGAT-GGTCACATGTGTAGTACTA
1 GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGA-A-TGATAAGTCACATGTGTAGTACTA
*
18790482 TGTGCAGGCTACTATGTGAACCGG
64 TGTGCAGGCTACTATGCGAACCGG
18790506 TATCATTAAT
Statistics
Matches: 78, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
101 35 0.45
102 39 0.50
103 4 0.05
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (101 bp):
GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATGATAAGTCACATGTGTAGTACTATG
TGCAGGCTACTATGCGAACCGGATAGATTCGATCAC
Found at i:18790592 original size:46 final size:43
Alignment explanation
Indices: 18790501--18790599 Score: 119
Period size: 46 Copynumber: 2.2 Consensus size: 43
18790491 TACTATGTGA
* *
18790501 ACCGGTATCATTAATTATAAGGTGGTTGCTATGTGTTGATCCC
1 ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTGATCCC
*
18790544 ACCGGATATCATTAATTACAAAGGGTGGTTGCTGTGTGCTGAAT-CC
1 ACCGG-TATCATTAATTA-AAA-GGTGGTTGCTATGTGCTG-ATCCC
18790590 ACCGTGTATC
1 ACCG-GTATC
18790600 TGTTATTATT
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
43 5 0.10
44 12 0.25
45 2 0.04
46 26 0.54
47 3 0.06
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.33
Consensus pattern (43 bp):
ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTGATCCC
Found at i:18790745 original size:16 final size:16
Alignment explanation
Indices: 18790724--18790754 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
18790714 GATTGAAAGC
*
18790724 GAAAAAGTGAAATTAT
1 GAAAAAGTAAAATTAT
18790740 GAAAAAGTAAAATTA
1 GAAAAAGTAAAATTA
18790755 GCAACAAAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.00, G:0.16, T:0.23
Consensus pattern (16 bp):
GAAAAAGTAAAATTAT
Found at i:18794596 original size:15 final size:17
Alignment explanation
Indices: 18794566--18794599 Score: 54
Period size: 15 Copynumber: 2.1 Consensus size: 17
18794556 TTTATTATAG
18794566 TTCCATCGATGACTTCA
1 TTCCATCGATGACTTCA
18794583 TTCCATC-A-GACTTCA
1 TTCCATCGATGACTTCA
18794598 TT
1 TT
18794600 TCTAACTCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 9 0.53
16 1 0.06
17 7 0.41
ACGTcount: A:0.24, C:0.29, G:0.09, T:0.38
Consensus pattern (17 bp):
TTCCATCGATGACTTCA
Found at i:18794981 original size:27 final size:27
Alignment explanation
Indices: 18794942--18795008 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 27
18794932 ACAAGGGTAT
* * * *
18794942 TTCCTTCATAGTTCGCCATGCATACCG
1 TTCCTTCAGAGTTCACCATGAATACCA
18794969 TTCCTTCAGAGTTCACCATGAATACCA
1 TTCCTTCAGAGTTCACCATGAATACCA
*
18794996 TTCCTTTAGAGTT
1 TTCCTTCAGAGTT
18795009 TACAATAGAG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.22, C:0.28, G:0.13, T:0.36
Consensus pattern (27 bp):
TTCCTTCAGAGTTCACCATGAATACCA
Found at i:18795123 original size:26 final size:27
Alignment explanation
Indices: 18795066--18795137 Score: 101
Period size: 26 Copynumber: 2.7 Consensus size: 27
18795056 ACAGATGTTG
** *
18795066 CCACAAAGGCTTTCACTACATGGTTTT
1 CCACAAAGGCTTTCTTTTCATGGTTTT
*
18795093 TCACAAAGGCTTT-TTTTCATGGTTTT
1 CCACAAAGGCTTTCTTTTCATGGTTTT
18795119 CCACAAAGGCTTTCTTTTC
1 CCACAAAGGCTTTCTTTTC
18795138 TAACGTGTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 22 0.56
27 17 0.44
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (27 bp):
CCACAAAGGCTTTCTTTTCATGGTTTT
Found at i:18800141 original size:29 final size:29
Alignment explanation
Indices: 18800109--18800165 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
18800099 TCTTTGACTC
18800109 AAACTTTGGCAAAATTACAATTTTGCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCT
* * * *
18800138 AAACTTTTGCATATTTACACTTTTGCCC
1 AAACTTTGGCAAAATTACAATTTTGCCC
18800166 CAAAACTCAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.39
Consensus pattern (29 bp):
AAACTTTGGCAAAATTACAATTTTGCCCT
Found at i:18830052 original size:45 final size:45
Alignment explanation
Indices: 18829865--18830074 Score: 199
Period size: 46 Copynumber: 4.6 Consensus size: 45
18829855 CTATTTGTTG
* * * * * *
18829865 TGTAGGTTCATCCCAAATGAGTGACCAGGCACTATTGTTCGATTCA
1 TGTAGGTTCAACCCTAACG-GTGACCAAGCACTATTATCCGATTCA
* * * **
18829911 TGTATGTTCAACCCTAACGAATGA-CTAGACACTATTATCCGATTTG
1 TGTAGGTTCAACCCTAACG-GTGACCAAG-CACTATTATCCGATTCA
* *
18829957 TGTAGGTTCAACCCTAACGGGTGACCAGGCACTATTATCCGATTCG
1 TGTAGGTTCAACCCTAAC-GGTGACCAAGCACTATTATCCGATTCA
** **
18830003 TGTAGGTTCAACCCTATA-GGTGGTCAAGCACTATTATTTGATTCA
1 TGTAGGTTCAACCCTA-ACGGTGACCAAGCACTATTATCCGATTCA
18830048 TGTAGGTTCAACCCTAACGGGTGACCA
1 TGTAGGTTCAACCCTAAC-GGTGACCA
18830075 TGTAACGCCC
Statistics
Matches: 134, Mismatches: 24, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
44 1 0.01
45 39 0.29
46 90 0.67
47 4 0.03
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (45 bp):
TGTAGGTTCAACCCTAACGGTGACCAAGCACTATTATCCGATTCA
Found at i:18830071 original size:91 final size:92
Alignment explanation
Indices: 18829865--18830074 Score: 246
Period size: 92 Copynumber: 2.3 Consensus size: 92
18829855 CTATTTGTTG
* * * * * * *
18829865 TGTAGGTTCATCCCAAATGAGTGACCAGGCACTATTGTTCGATTCATGTATGTTCAACCCTAACG
1 TGTAGGTTCAACCCTAACGGGTGACCAGGCACTATTATCCGATTCATGTAGGTTCAACCCTAACG
* **
18829930 AATGACTAGACACTATTATCCGATTTG
66 AATGACAAGACACTATTATCCGATTCA
*
18829957 TGTAGGTTCAACCCTAACGGGTGACCAGGCACTATTATCCGATTCGTGTAGGTTCAACCCTATA-
1 TGTAGGTTCAACCCTAACGGGTGACCAGGCACTATTATCCGATTCATGTAGGTTCAACCCTA-AC
* * **
18830021 G-GTGGTCAAG-CACTATTATTTGATTCA
65 GAAT-GACAAGACACTATTATCCGATTCA
18830048 TGTAGGTTCAACCCTAACGGGTGACCA
1 TGTAGGTTCAACCCTAACGGGTGACCA
18830075 TGTAACGCCC
Statistics
Matches: 101, Mismatches: 15, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
91 41 0.41
92 59 0.58
93 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (92 bp):
TGTAGGTTCAACCCTAACGGGTGACCAGGCACTATTATCCGATTCATGTAGGTTCAACCCTAACG
AATGACAAGACACTATTATCCGATTCA
Found at i:18838279 original size:18 final size:17
Alignment explanation
Indices: 18838256--18838289 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
18838246 TAAAGTGTGC
18838256 ATAATAAAATTAAAATAT
1 ATAATAAAA-TAAAATAT
18838274 ATAATAAAATAAAATA
1 ATAATAAAATAAAATA
18838290 GAGTTTTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
ATAATAAAATAAAATAT
Found at i:18851851 original size:12 final size:12
Alignment explanation
Indices: 18851834--18851859 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
18851824 TAGTAGCCTT
18851834 CACATAGTACTA
1 CACATAGTACTA
18851846 CACATAGTACTA
1 CACATAGTACTA
18851858 CA
1 CA
18851860 TTTGAATGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.27, G:0.08, T:0.23
Consensus pattern (12 bp):
CACATAGTACTA
Found at i:18853754 original size:21 final size:21
Alignment explanation
Indices: 18853728--18853771 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
18853718 TTGGTACCTT
*
18853728 TGAATTGCAAATACGTGCCCC
1 TGAATTACAAATACGTGCCCC
*
18853749 TGAATTACACATACGTGCCCC
1 TGAATTACAAATACGTGCCCC
18853770 TG
1 TG
18853772 TTTATACTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (21 bp):
TGAATTACAAATACGTGCCCC
Found at i:18864270 original size:27 final size:27
Alignment explanation
Indices: 18864232--18864664 Score: 461
Period size: 27 Copynumber: 16.1 Consensus size: 27
18864222 GACCAAAATG
*
18864232 CCTTGAAGGGTAAAATGACAGAAATGC
1 CCTTGAAGGGTAAAATGACAGAAATAC
* * *
18864259 CCTTGAAGGGTAAAATTACTGAAATGC
1 CCTTGAAGGGTAAAATGACAGAAATAC
*
18864286 CCTGGAAGGGTAAAATGATC-GAAATAC
1 CCTTGAAGGGTAAAATGA-CAGAAATAC
*
18864313 CCTCGAAGGGTAAAATGATC-GAAATAC
1 CCTTGAAGGGTAAAATGA-CAGAAATAC
*
18864340 CCTCGAAGGGTAAAATGACTA-AAATAC
1 CCTTGAAGGGTAAAATGAC-AGAAATAC
*
18864367 CCTTAAAGGGTAAAATGACCA-AAATAC
1 CCTTGAAGGGTAAAATGA-CAGAAATAC
** * * *
18864394 CCTCAAAGGGTAAAATAACCGAAATGC
1 CCTTGAAGGGTAAAATGACAGAAATAC
*
18864421 CCTTGAAGGGTAAAATGAACA-AAATGC
1 CCTTGAAGGGTAAAATG-ACAGAAATAC
*
18864448 CCTTGAAGGGTAAAATGACTGAAATAC
1 CCTTGAAGGGTAAAATGACAGAAATAC
* ** *
18864475 CCTTAAAGGGTAAAATGATTGAAATGC
1 CCTTGAAGGGTAAAATGACAGAAATAC
* *
18864502 CCTCGAA-GGTAAAATGATC-GAAAAAC
1 CCTTGAAGGGTAAAATGA-CAGAAATAC
18864528 CCTTGAAGGGTAAAATGATC-GAAATAC
1 CCTTGAAGGGTAAAATGA-CAGAAATAC
18864555 CCTTGAAGGGTAAAATGACCA-AAATAC
1 CCTTGAAGGGTAAAATGA-CAGAAATAC
** * *
18864582 CCCCGAAGGGTAAAATGACCGAAATCC
1 CCTTGAAGGGTAAAATGACAGAAATAC
* * *
18864609 CCTCGCAGGGTAAAATGACTGAAATAC
1 CCTTGAAGGGTAAAATGACAGAAATAC
* *
18864636 CCTTAAAGGGTAAAATGACCGAAATAC
1 CCTTGAAGGGTAAAATGACAGAAATAC
18864663 CC
1 CC
18864665 CATAGGGTAA
Statistics
Matches: 354, Mismatches: 41, Indels: 22
0.85 0.10 0.05
Matches are distributed among these distances:
26 26 0.07
27 324 0.92
28 4 0.01
ACGTcount: A:0.42, C:0.18, G:0.21, T:0.19
Consensus pattern (27 bp):
CCTTGAAGGGTAAAATGACAGAAATAC
Found at i:18864376 original size:81 final size:80
Alignment explanation
Indices: 18864232--18864678 Score: 517
Period size: 81 Copynumber: 5.5 Consensus size: 80
18864222 GACCAAAATG
* * * * * * * *
18864232 CCTTGAAGGGTAAAATGACAGAAATGCCCTTGAAGGGTAAAATTACTGAAATGCCCTGGAAGGGT
1 CCTTAAAGGGTAAAATGACCGAAATACCCTCGAAGGGTAAAATGACTAAAATACCCTTGAAGGGT
18864297 AAAATGATCGAAATAC
66 AAAATGA-CGAAATAC
** * *
18864313 CCTCGAAGGGTAAAATGATCGAAATACCCTCGAAGGGTAAAATGACTAAAATACCCTTAAAGGGT
1 CCTTAAAGGGTAAAATGACCGAAATACCCTCGAAGGGTAAAATGACTAAAATACCCTTGAAGGGT
*
18864378 AAAATGACCAAAATAC
66 AAAATGA-CGAAATAC
* * * * *
18864394 CCTCAAAGGGTAAAATAACCGAAATGCCCTTGAAGGGTAAAATGAAC-AAAATGCCCTTGAAGGG
1 CCTTAAAGGGTAAAATGACCGAAATACCCTCGAAGGGTAAAATG-ACTAAAATACCCTTGAAGGG
18864458 TAAAATGACTGAAATAC
65 TAAAATGAC-GAAATAC
** * *
18864475 CCTTAAAGGGTAAAATGATTGAAATGCCCTCGAA-GGTAAAATGATCGAAAA-ACCCTTGAAGGG
1 CCTTAAAGGGTAAAATGACCGAAATACCCTCGAAGGGTAAAATGA-CTAAAATACCCTTGAAGGG
18864538 TAAAATGATCGAAATAC
65 TAAAATGA-CGAAATAC
* * * ** * * *
18864555 CCTTGAAGGGTAAAATGACCAAAATACCCCCGAAGGGTAAAATGACCGAAATCCCCTCGCAGGGT
1 CCTTAAAGGGTAAAATGACCGAAATACCCTCGAAGGGTAAAATGACTAAAATACCCTTGAAGGGT
18864620 AAAATGACTGAAATAC
66 AAAATGAC-GAAATAC
18864636 CCTTAAAGGGTAAAATGACCGAAATACCC-C-ATAGGGTAAAATG
1 CCTTAAAGGGTAAAATGACCGAAATACCCTCGA-AGGGTAAAATG
18864679 GCTGTTATAC
Statistics
Matches: 318, Mismatches: 39, Indels: 19
0.85 0.10 0.05
Matches are distributed among these distances:
79 2 0.01
80 82 0.26
81 232 0.73
82 2 0.01
ACGTcount: A:0.42, C:0.18, G:0.21, T:0.19
Consensus pattern (80 bp):
CCTTAAAGGGTAAAATGACCGAAATACCCTCGAAGGGTAAAATGACTAAAATACCCTTGAAGGGT
AAAATGACGAAATAC
Found at i:18864899 original size:26 final size:26
Alignment explanation
Indices: 18864855--18864906 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
18864845 TTGCCACATA
* *
18864855 TACTGTTACTGGAAACTTTGTTGCGT
1 TACTGTTACTAGAAACTTTATTGCGT
* *
18864881 TACTGTTACTAGTAGCTTTATTGCGT
1 TACTGTTACTAGAAACTTTATTGCGT
18864907 CATTATTACT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.19, C:0.15, G:0.21, T:0.44
Consensus pattern (26 bp):
TACTGTTACTAGAAACTTTATTGCGT
Found at i:18867253 original size:24 final size:24
Alignment explanation
Indices: 18867225--18867274 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
18867215 TCTCATGGGT
18867225 GATCCAACGTGAAAGCCAGATGCA
1 GATCCAACGTGAAAGCCAGATGCA
18867249 GATCCAACGTGAAAGCCAGATGCA
1 GATCCAACGTGAAAGCCAGATGCA
18867273 GA
1 GA
18867275 CTAACTTCTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.38, C:0.24, G:0.26, T:0.12
Consensus pattern (24 bp):
GATCCAACGTGAAAGCCAGATGCA
Found at i:18870602 original size:29 final size:29
Alignment explanation
Indices: 18870560--18870826 Score: 128
Period size: 29 Copynumber: 9.1 Consensus size: 29
18870550 GTGTGCTAAA
*
18870560 CGATGGTTGGAACCATCCCTTTTCATATT
1 CGATGGTTGAAACCATCCCTTTTCATATT
*
18870589 CGATGGTTGAAACCATTCCTTTTCATTACTT
1 CGATGGTTGAAACCATCCCTTTTCA-TA-TT
***
18870620 -GATGGTTCTCACCATCCCTTTTCAT-TAT
1 CGATGGTTGAAACCATCCCTTTTCATAT-T
* ** * *** *
18870648 CGATGGTCGTCACTATTATTTTTTTATAATT
1 CGATGGTTGAAACCA-TCCCTTTTCAT-ATT
* ** * *
18870679 -GATAGCAGAAGCTATCCCTTTTCATATT
1 CGATGGTTGAAACCATCCCTTTTCATATT
* ** *
18870707 CGATGGTCGTCACCATCCCTTTTCCTAGTT
1 CGATGGTTGAAACCATCCCTTTTCATA-TT
* * ** *
18870737 -GATGATCGTTACCATCCCTTTTCATAAT
1 CGATGGTTGAAACCATCCCTTTTCATATT
*** * * *
18870765 CGACAATTGAAGCTATCCCTTTTCATTTT
1 CGATGGTTGAAACCATCCCTTTTCATATT
* * *
18870794 CGATAGTTGAAGCTATCCCTTTTCATATT
1 CGATGGTTGAAACCATCCCTTTTCATATT
18870823 CGAT
1 CGAT
18870827 AGCTGAAGCT
Statistics
Matches: 181, Mismatches: 47, Indels: 20
0.73 0.19 0.08
Matches are distributed among these distances:
27 1 0.01
28 5 0.03
29 132 0.73
30 39 0.22
31 3 0.02
32 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.41
Consensus pattern (29 bp):
CGATGGTTGAAACCATCCCTTTTCATATT
Found at i:18870827 original size:29 final size:29
Alignment explanation
Indices: 18870750--18870848 Score: 144
Period size: 29 Copynumber: 3.4 Consensus size: 29
18870740 GATCGTTACC
* * *
18870750 ATCCCTTTTCATAATCGACAATTGAAGCT
1 ATCCCTTTTCATATTCGATAGTTGAAGCT
*
18870779 ATCCCTTTTCATTTTCGATAGTTGAAGCT
1 ATCCCTTTTCATATTCGATAGTTGAAGCT
*
18870808 ATCCCTTTTCATATTCGATAGCTGAAGCT
1 ATCCCTTTTCATATTCGATAGTTGAAGCT
*
18870837 ATCGCTTTTCAT
1 ATCCCTTTTCAT
18870849 TGGACGATCA
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 63 1.00
ACGTcount: A:0.24, C:0.23, G:0.12, T:0.40
Consensus pattern (29 bp):
ATCCCTTTTCATATTCGATAGTTGAAGCT
Found at i:18872459 original size:138 final size:138
Alignment explanation
Indices: 18872206--18872490 Score: 507
Period size: 138 Copynumber: 2.1 Consensus size: 138
18872196 AAGCTACAAA
* * *
18872206 ATATGAATTATATTCTTTCTAAAAGAATATTAATTTCCATGTATTTTATATTTTGACCAAAATTA
1 ATATTAATTATATTCTTTCAAAAAGAATATTAATTTCCATGTATTTTATATTTTGACCAAAATAA
*
18872271 ATTAATATAACTGTTTATATTAATAAATTTTGTAAAATATATCCAAATAATACTTCGTATGAATC
66 ATTAATATAACTATTTATATTAATAAATTTTGTAAAATATATCCAAATAATACTTCGTATGAATC
18872336 AAATTCAT
131 AAATTCAT
* * *
18872344 ATATTAATTATATTCTTTCAAAAAGAATATTAATTTCCATGTCTTTTATATTTTGATCGAAATAA
1 ATATTAATTATATTCTTTCAAAAAGAATATTAATTTCCATGTATTTTATATTTTGACCAAAATAA
18872409 ATTAATATAACTATTTATATTAATAAATTTTGTAAAATATATCCAAATAATACTTCGTATGAATC
66 ATTAATATAACTATTTATATTAATAAATTTTGTAAAATATATCCAAATAATACTTCGTATGAATC
18872474 AAATTCAT
131 AAATTCAT
18872482 ATATTAATT
1 ATATTAATT
18872491 TTATCTATGT
Statistics
Matches: 140, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
138 140 1.00
ACGTcount: A:0.42, C:0.09, G:0.05, T:0.44
Consensus pattern (138 bp):
ATATTAATTATATTCTTTCAAAAAGAATATTAATTTCCATGTATTTTATATTTTGACCAAAATAA
ATTAATATAACTATTTATATTAATAAATTTTGTAAAATATATCCAAATAATACTTCGTATGAATC
AAATTCAT
Found at i:18879207 original size:138 final size:138
Alignment explanation
Indices: 18878972--18879222 Score: 430
Period size: 138 Copynumber: 1.8 Consensus size: 138
18878962 TCCATCTTCA
* *
18878972 TGTCCTTTATATTTTGACCAAAATTAATTAATATAACTATTTATATTAATAATTTCGGTAAAATA
1 TGTCCTTTATATTTTGACCAAAATTAATTAATATAACTATTTATATTAATAAATTCGATAAAATA
* * * *
18879037 TATACAATTAATATTTTGTATGAATCATATTCATATATTAATTATATTTTGTCCAAAAGAATATT
66 TATACAAGTAATATTTTGTATAAACCAAATTCATATATTAATTATATTTTGTCCAAAAGAATATT
18879102 AAGTTTCG
131 AAGTTTCG
* *
18879110 TGTCCTTTATATTTTGACCGAAATTAATTAATATAACTGTTTATATTAATAAATTCGATAAAATA
1 TGTCCTTTATATTTTGACCAAAATTAATTAATATAACTATTTATATTAATAAATTCGATAAAATA
18879175 TATACAAGTAATATTTTGTATAAACCAAATTCATATATTAATTATATT
66 TATACAAGTAATATTTTGTATAAACCAAATTCATATATTAATTATATT
18879223 CTAAATTAAT
Statistics
Matches: 105, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
138 105 1.00
ACGTcount: A:0.40, C:0.09, G:0.07, T:0.44
Consensus pattern (138 bp):
TGTCCTTTATATTTTGACCAAAATTAATTAATATAACTATTTATATTAATAAATTCGATAAAATA
TATACAAGTAATATTTTGTATAAACCAAATTCATATATTAATTATATTTTGTCCAAAAGAATATT
AAGTTTCG
Found at i:18879237 original size:95 final size:95
Alignment explanation
Indices: 18879130--18879319 Score: 326
Period size: 95 Copynumber: 2.0 Consensus size: 95
18879120 ATTTTGACCG
* * *
18879130 AAATTAATTAATATAACTGTTTATATTAATAAATTCGATAAAATATATACAAGTAATATTTTGTA
1 AAATTAATTAATATAACTATTTATATTAATAAACTCAATAAAATATATACAAGTAATATTTTGTA
18879195 TAAACCAAATTCATATATTAATTATATTCT
66 TAAACCAAATTCATATATTAATTATATTCT
*
18879225 AAATTAATTAATATAACTATTTATATTAATAAACTCAATAAAATATATACAATTAATATTTTGTA
1 AAATTAATTAATATAACTATTTATATTAATAAACTCAATAAAATATATACAAGTAATATTTTGTA
* *
18879290 TGAATCAAATTCATATATTAATTATATTCT
66 TAAACCAAATTCATATATTAATTATATTCT
18879320 TTCCAAAAGA
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
95 89 1.00
ACGTcount: A:0.47, C:0.07, G:0.03, T:0.43
Consensus pattern (95 bp):
AAATTAATTAATATAACTATTTATATTAATAAACTCAATAAAATATATACAAGTAATATTTTGTA
TAAACCAAATTCATATATTAATTATATTCT
Found at i:18889443 original size:26 final size:25
Alignment explanation
Indices: 18889361--18889443 Score: 121
Period size: 26 Copynumber: 3.2 Consensus size: 25
18889351 TCTCATCCCT
*
18889361 ATTTTACCCCAATAAAATTTTGACA
1 ATTTTACCCCGATAAAATTTTGACA
*
18889386 ATTTTTCCCCCGATAAAATTTTGACA
1 A-TTTTACCCCGATAAAATTTTGACA
*
18889412 ATTTTACCCCTGATAAAATTTTGACG
1 ATTTTACCCC-GATAAAATTTTGACA
18889438 ATTTTA
1 ATTTTA
18889444 GCACTACTTA
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
25 9 0.17
26 43 0.83
ACGTcount: A:0.34, C:0.19, G:0.07, T:0.40
Consensus pattern (25 bp):
ATTTTACCCCGATAAAATTTTGACA
Found at i:18889456 original size:26 final size:26
Alignment explanation
Indices: 18889372--18889461 Score: 101
Period size: 26 Copynumber: 3.5 Consensus size: 26
18889362 TTTTACCCCA
* * *
18889372 ATAAAATTTTGACAATTTTTCCCCCG
1 ATAAAATTTTGACAATTTTACCACTG
*
18889398 ATAAAATTTTGACAATTTTACCCCTG
1 ATAAAATTTTGACAATTTTACCACTG
* *
18889424 ATAAAATTTTGACGATTTTAGCACT-
1 ATAAAATTTTGACAATTTTACCACTG
*
18889449 ACTTAAATTTTGA
1 A-TAAAATTTTGA
18889462 GAAAATATGT
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
25 1 0.02
26 56 0.98
ACGTcount: A:0.34, C:0.17, G:0.09, T:0.40
Consensus pattern (26 bp):
ATAAAATTTTGACAATTTTACCACTG
Found at i:18901979 original size:39 final size:39
Alignment explanation
Indices: 18901934--18902109 Score: 237
Period size: 39 Copynumber: 4.5 Consensus size: 39
18901924 AACATGTTTT
*
18901934 TGAGTATTGCGACATATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGCGATATATGCTTGAATGTTATGTGATTATA
* *
18901973 TAAGTATTGCGATATATGCTTGAATGTTATGTGATCATA
1 TGAGTATTGCGATATATGCTTGAATGTTATGTGATTATA
* *
18902012 TGAGTATTGCGATATGTGCTTGAACTG-TATGTAATTATA
1 TGAGTATTGCGATATATGCTTGAA-TGTTATGTGATTATA
* *
18902051 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
1 TGAGTATTGCGATATATGCTTGAATGTTATGTGATTATA
* * * *
18902090 TGTGTAATGTGATGTATGCT
1 TGAGTATTGCGATATATGCT
18902110 CAAAAGTGAA
Statistics
Matches: 121, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
38 2 0.02
39 117 0.97
40 2 0.02
ACGTcount: A:0.28, C:0.06, G:0.23, T:0.43
Consensus pattern (39 bp):
TGAGTATTGCGATATATGCTTGAATGTTATGTGATTATA
Found at i:18902804 original size:52 final size:52
Alignment explanation
Indices: 18902725--18902830 Score: 185
Period size: 52 Copynumber: 2.0 Consensus size: 52
18902715 AGCGCTGGAA
*
18902725 GTTAGAATCGTAAATTGGTATCTATACCCTATCATGAGTATCAATACTCAGG
1 GTTAGAATCGTAAATTGGTATCGATACCCTATCATGAGTATCAATACTCAGG
* *
18902777 GTTAGAATTGTAAATTGGTATCGATACCCTATCATGAGTATCGATACTCAGG
1 GTTAGAATCGTAAATTGGTATCGATACCCTATCATGAGTATCAATACTCAGG
18902829 GT
1 GT
18902831 AATTTTATTG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (52 bp):
GTTAGAATCGTAAATTGGTATCGATACCCTATCATGAGTATCAATACTCAGG
Found at i:18903938 original size:19 final size:18
Alignment explanation
Indices: 18903914--18903950 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
18903904 GTTTTTCATG
*
18903914 TATATGTTTGATAATATGA
1 TATATGTTTCAT-ATATGA
18903933 TATATGTTTCATATATGA
1 TATATGTTTCATATATGA
18903951 ACTCAATAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.35, C:0.03, G:0.14, T:0.49
Consensus pattern (18 bp):
TATATGTTTCATATATGA
Found at i:18908826 original size:23 final size:23
Alignment explanation
Indices: 18908800--18908957 Score: 145
Period size: 23 Copynumber: 6.8 Consensus size: 23
18908790 AAACTGTTAT
*
18908800 CGAACTAATTTTGATACTGTTAC
1 CGAACTAATTTTGATACTATTAC
* *
18908823 CGAACCAATTTTGATACTATTAT
1 CGAACTAATTTTGATACTATTAC
* * * *
18908846 CAAACTGATTTTCATACTACTAC
1 CGAACTAATTTTGATACTATTAC
* * *
18908869 CGAACTGATTTTGATATTGTTAC
1 CGAACTAATTTTGATACTATTAC
* *
18908892 CGAACTGATTATGATACTATTAC
1 CGAACTAATTTTGATACTATTAC
** * * *
18908915 AAAACTATTTTTTTATACTAATAC
1 CGAACTA-ATTTTGATACTATTAC
*
18908939 CAAACTAATTTTGATACTA
1 CGAACTAATTTTGATACTA
18908958 AAATGCATGA
Statistics
Matches: 107, Mismatches: 27, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
23 89 0.83
24 18 0.17
ACGTcount: A:0.35, C:0.17, G:0.09, T:0.39
Consensus pattern (23 bp):
CGAACTAATTTTGATACTATTAC
Found at i:18908911 original size:69 final size:69
Alignment explanation
Indices: 18908800--18908956 Score: 201
Period size: 69 Copynumber: 2.3 Consensus size: 69
18908790 AAACTGTTAT
*
18908800 CGAACTAATTTTGATACTGTTACCGAACCAATTTTGATACTATTATC-AAACTGA-TTTTCATAC
1 CGAACTAATTTTGATACTGTTACCGAACCAATTATGATACTATTA-CAAAACT-ATTTTTCATAC
*
18908863 TACTAC
64 TAATAC
* * ** *
18908869 CGAACTGATTTTGATATTGTTACCGAACTGATTATGATACTATTACAAAACTATTTTTTTATACT
1 CGAACTAATTTTGATACTGTTACCGAACCAATTATGATACTATTACAAAACTA-TTTTTCATACT
18908934 AATAC
65 AATAC
*
18908939 CAAACTAATTTTGATACT
1 CGAACTAATTTTGATACT
18908957 AAAATGCATG
Statistics
Matches: 75, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
68 2 0.03
69 45 0.60
70 28 0.37
ACGTcount: A:0.34, C:0.17, G:0.09, T:0.39
Consensus pattern (69 bp):
CGAACTAATTTTGATACTGTTACCGAACCAATTATGATACTATTACAAAACTATTTTTCATACTA
ATAC
Found at i:18910839 original size:82 final size:82
Alignment explanation
Indices: 18910702--18910864 Score: 308
Period size: 82 Copynumber: 2.0 Consensus size: 82
18910692 CATAAAACGA
*
18910702 TTAAATCATTCAAAAATTGTTCATTAGATCACAAGGATATTTTCCTTTCCTATCCACAACACTTC
1 TTAAATCATTCAAAAATTGTTCATTAGATCACAAGCATATTTTCCTTTCCTATCCACAACACTTC
18910767 ACATAGTTAGTAGATAC
66 ACATAGTTAGTAGATAC
*
18910784 TTAAATCATTCAAACATTGTTCATTAGATCACAAGCATATTTTCCTTTCCTATCCACAACACTTC
1 TTAAATCATTCAAAAATTGTTCATTAGATCACAAGCATATTTTCCTTTCCTATCCACAACACTTC
18910849 ACATAGTTAGTAGATA
66 ACATAGTTAGTAGATA
18910865 TACTTAAGAA
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
82 79 1.00
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.36
Consensus pattern (82 bp):
TTAAATCATTCAAAAATTGTTCATTAGATCACAAGCATATTTTCCTTTCCTATCCACAACACTTC
ACATAGTTAGTAGATAC
Found at i:18912895 original size:50 final size:50
Alignment explanation
Indices: 18912825--18912923 Score: 137
Period size: 50 Copynumber: 2.0 Consensus size: 50
18912815 GTGATATCCT
18912825 GGGCAGTATGCTTCAGCTTCAAGG-TGTCTTAAAGGGTGTGTCACGACATA
1 GGGCAGTATGCTTCAGCTTC-AGGTTGTCTTAAAGGGTGTGTCACGACATA
* * * * *
18912875 GGGCAGTGTGTTTCATCTTCAGGTTGTCTTCAAGGGTGTGTCGCGACAT
1 GGGCAGTATGCTTCAGCTTCAGGTTGTCTTAAAGGGTGTGTCACGACAT
18912924 CCTCAGACTA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
49 3 0.07
50 40 0.93
ACGTcount: A:0.19, C:0.18, G:0.31, T:0.31
Consensus pattern (50 bp):
GGGCAGTATGCTTCAGCTTCAGGTTGTCTTAAAGGGTGTGTCACGACATA
Found at i:18914348 original size:19 final size:19
Alignment explanation
Indices: 18914324--18914361 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
18914314 TTGGTAAGAC
18914324 ATTGCAATTACAAATTCAA
1 ATTGCAATTACAAATTCAA
*
18914343 ATTGCAATTACCAATTCAA
1 ATTGCAATTACAAATTCAA
18914362 CATAAACTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.18, G:0.05, T:0.32
Consensus pattern (19 bp):
ATTGCAATTACAAATTCAA
Found at i:18914780 original size:80 final size:80
Alignment explanation
Indices: 18914638--18914827 Score: 231
Period size: 80 Copynumber: 2.4 Consensus size: 80
18914628 GAGTTACTAG
* * *
18914638 AGTATAAACAAGGGCACATAAGTGCATTTAGGGGTACCAAAGTACAAACAGAGGAACATAAGTGC
1 AGTATAAACAAGGGCACGTAAGTGCAATCAGGGGTACCAAAGTACAAACAGAGGAACATAAGTGC
18914703 AATCAAGGGTACCAA
66 AATCAAGGGTACCAA
* * * *
18914718 AGTATAAACAGGGGCACGTAAGTGTAATCAGGGGTATCGAAGTACAAACAG-GG-ACATGTAAGT
1 AGTATAAACAAGGGCACGTAAGTGCAATCAGGGGTACCAAAGTACAAACAGAGGAACA--TAAGT
* *
18914781 GCAATCATGGGTACCGA
64 GCAATCAAGGGTACCAA
* * * *
18914798 AGAACAATCAAGGGCACGTAAGTTCAATCA
1 AGTATAAACAAGGGCACGTAAGTGCAATCA
18914828 TACAATAATT
Statistics
Matches: 93, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
78 3 0.03
79 2 0.02
80 88 0.95
ACGTcount: A:0.41, C:0.16, G:0.26, T:0.17
Consensus pattern (80 bp):
AGTATAAACAAGGGCACGTAAGTGCAATCAGGGGTACCAAAGTACAAACAGAGGAACATAAGTGC
AATCAAGGGTACCAA
Found at i:18914828 original size:40 final size:40
Alignment explanation
Indices: 18914638--18914828 Score: 179
Period size: 40 Copynumber: 4.8 Consensus size: 40
18914628 GAGTTACTAG
* * * * * *
18914638 AGTATAAACAAGGGCACATAAGTGCATTTAGGGGTACCAA
1 AGTACAAACAAGGGCACGTAAGTGCAATCATGGGTACCGA
* * * *
18914678 AGTACAAAC-AGAGGAACATAAGTGCAATCAAGGGTACCAA
1 AGTACAAACAAG-GGCACGTAAGTGCAATCATGGGTACCGA
* * * * *
18914718 AGTATAAACAGGGGCACGTAAGTGTAATCAGGGGTATCGA
1 AGTACAAACAAGGGCACGTAAGTGCAATCATGGGTACCGA
*
18914758 AGTACAAAC-AGGGACATGTAAGTGCAATCATGGGTACCGA
1 AGTACAAACAAGGG-CACGTAAGTGCAATCATGGGTACCGA
* * *
18914798 AGAACAATCAAGGGCACGTAAGTTCAATCAT
1 AGTACAAACAAGGGCACGTAAGTGCAATCAT
18914829 ACAATAATTT
Statistics
Matches: 124, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
39 5 0.04
40 114 0.92
41 5 0.04
ACGTcount: A:0.40, C:0.16, G:0.26, T:0.18
Consensus pattern (40 bp):
AGTACAAACAAGGGCACGTAAGTGCAATCATGGGTACCGA
Found at i:18915609 original size:16 final size:16
Alignment explanation
Indices: 18915588--18915636 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
18915578 TTCATCTTTT
18915588 ACTTAATTAACATTTA
1 ACTTAATTAACATTTA
* *
18915604 ACTTAATTACCAAATT-
1 ACTTAATTAAC-ATTTA
*
18915620 ACTTAATTAACCTTTA
1 ACTTAATTAACATTTA
18915636 A
1 A
18915637 ACATTATCAG
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
15 2 0.08
16 21 0.81
17 3 0.12
ACGTcount: A:0.43, C:0.16, G:0.00, T:0.41
Consensus pattern (16 bp):
ACTTAATTAACATTTA
Found at i:18916233 original size:23 final size:24
Alignment explanation
Indices: 18916207--18916253 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
18916197 TACCCTTTCC
*
18916207 CACTCACCCT-CTTATTTCTCCTT
1 CACTCACCCTCCTTATGTCTCCTT
*
18916230 CACTCACCTTCCTTATGTCTCCTT
1 CACTCACCCTCCTTATGTCTCCTT
18916254 ATAGGAAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.13, C:0.43, G:0.02, T:0.43
Consensus pattern (24 bp):
CACTCACCCTCCTTATGTCTCCTT
Found at i:18918853 original size:8 final size:9
Alignment explanation
Indices: 18918825--18918860 Score: 54
Period size: 9 Copynumber: 3.8 Consensus size: 9
18918815 AAGTCATGAA
18918825 TTCTTTTATT
1 TTCTTTT-TT
18918835 TCTCTTTTTT
1 T-TCTTTTTT
18918845 TTCTTTTTT
1 TTCTTTTTT
18918854 TTCTTTT
1 TTCTTTT
18918861 CCTTTCAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 15 0.60
10 4 0.16
11 6 0.24
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (9 bp):
TTCTTTTTT
Found at i:18931516 original size:2 final size:2
Alignment explanation
Indices: 18931509--18931539 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
18931499 CACAATTTGT
18931509 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
18931540 TAATGTCCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:18935088 original size:17 final size:16
Alignment explanation
Indices: 18935057--18935092 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
18935047 TTGTTGAAGT
18935057 AATTAATTAATATATA
1 AATTAATTAATATATA
*
18935073 AATTAATATTATATATA
1 AATTAAT-TAATATATA
18935090 AAT
1 AAT
18935093 ATTTAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
AATTAATTAATATATA
Found at i:18935107 original size:12 final size:12
Alignment explanation
Indices: 18935065--18935107 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
18935055 GTAATTAATT
* *
18935065 AATATATAAATT
1 AATATTTAAATA
*
18935077 AATATTATATATA
1 AATATT-TAAATA
18935090 AATATTTAAATA
1 AATATTTAAATA
18935102 AATATT
1 AATATT
18935108 ATATTTTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
12 16 0.62
13 10 0.38
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
AATATTTAAATA
Found at i:18936109 original size:12 final size:12
Alignment explanation
Indices: 18936092--18936116 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
18936082 AAATCTTTTT
18936092 AAAATTTAAAAA
1 AAAATTTAAAAA
18936104 AAAATTTAAAAA
1 AAAATTTAAAAA
18936116 A
1 A
18936117 TTACAAAAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
AAAATTTAAAAA
Found at i:18936353 original size:20 final size:21
Alignment explanation
Indices: 18936309--18936355 Score: 60
Period size: 23 Copynumber: 2.2 Consensus size: 21
18936299 AAATAATTTA
18936309 TTTTTAATTTTTGGAATTAAAAT
1 TTTTTAATTTTT-G-ATTAAAAT
*
18936332 TTTTTAATTTTT-ATTCAAAT
1 TTTTTAATTTTTGATTAAAAT
18936352 TTTT
1 TTTT
18936356 AAATAAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 11 0.48
23 12 0.52
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.64
Consensus pattern (21 bp):
TTTTTAATTTTTGATTAAAAT
Found at i:18936872 original size:9 final size:9
Alignment explanation
Indices: 18936858--18936905 Score: 50
Period size: 9 Copynumber: 5.8 Consensus size: 9
18936848 ATTGGGTTAG
18936858 ATAATTAAA
1 ATAATTAAA
*
18936867 ATAATTAAG
1 ATAATTAAA
18936876 A-AA-T-AA
1 ATAATTAAA
*
18936882 ATAAATAAA
1 ATAATTAAA
18936891 AT-ATTAAA
1 ATAATTAAA
18936899 ATAATTA
1 ATAATTA
18936906 GAATTAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
6 2 0.06
7 3 0.09
8 10 0.31
9 17 0.53
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (9 bp):
ATAATTAAA
Found at i:18938369 original size:23 final size:22
Alignment explanation
Indices: 18938331--18938475 Score: 110
Period size: 23 Copynumber: 6.2 Consensus size: 22
18938321 GATATGTTGA
18938331 AGGGTATATTGGTTGTGTTTGG
1 AGGGTATATTGGTTGTGTTTGG
***
18938353 AGGGTATACTTGGTTGTGTTCAA
1 AGGGTATA-TTGGTTGTGTTTGG
** *
18938376 AGCTTATATATATATGGTTTTGTTTGG
1 AG----GGTATAT-TGGTTGTGTTTGG
* *
18938403 AAGGTATATTTGGTTATGTTTGG
1 AGGGTATA-TTGGTTGTGTTTGG
*
18938426 AGGGTACATATGGTTGTGTTTGG
1 AGGGTATAT-TGGTTGTGTTTGG
* *
18938449 AGGGTAAATTAGTTGTGTTTGG
1 AGGGTATATTGGTTGTGTTTGG
*
18938471 TGGGT
1 AGGGT
18938476 GATAGTTTTA
Statistics
Matches: 96, Mismatches: 19, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
22 25 0.26
23 55 0.57
24 1 0.01
26 1 0.01
27 14 0.15
ACGTcount: A:0.19, C:0.03, G:0.34, T:0.44
Consensus pattern (22 bp):
AGGGTATATTGGTTGTGTTTGG
Found at i:18942824 original size:12 final size:12
Alignment explanation
Indices: 18942780--18942827 Score: 57
Period size: 12 Copynumber: 4.1 Consensus size: 12
18942770 TTTAATCACT
18942780 TTTAATATTAAA
1 TTTAATATTAAA
18942792 -TTAATA-TAATA
1 TTTAATATTAA-A
18942803 TTT-ATCATTAAA
1 TTTAAT-ATTAAA
18942815 TTTAATATTAAA
1 TTTAATATTAAA
18942827 T
1 T
18942828 CTTGTTAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
10 3 0.10
11 9 0.29
12 14 0.45
13 5 0.16
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:18942913 original size:20 final size:18
Alignment explanation
Indices: 18942866--18942914 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
18942856 CGAGATAAAC
18942866 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
18942883 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
18942903 ATTAAATTAATA
1 ATTAAATTAATA
18942915 AAATACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 3 0.11
20 15 0.56
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:18943681 original size:12 final size:12
Alignment explanation
Indices: 18943637--18943684 Score: 57
Period size: 12 Copynumber: 4.1 Consensus size: 12
18943627 TTTAATCACT
18943637 TTTAATATTAAA
1 TTTAATATTAAA
18943649 -TTAATA-TAATA
1 TTTAATATTAA-A
18943660 TTT-ATCATTAAA
1 TTTAAT-ATTAAA
18943672 TTTAATATTAAA
1 TTTAATATTAAA
18943684 T
1 T
18943685 CTTGTTAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
10 3 0.10
11 9 0.29
12 14 0.45
13 5 0.16
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:18943770 original size:20 final size:18
Alignment explanation
Indices: 18943723--18943771 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
18943713 CGAGATAAAC
18943723 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
18943740 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
18943760 ATTAAATTAATA
1 ATTAAATTAATA
18943772 AAATACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 3 0.11
20 15 0.56
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:18943773 original size:857 final size:857
Alignment explanation
Indices: 18942121--18943834 Score: 3428
Period size: 857 Copynumber: 2.0 Consensus size: 857
18942111 TTCATCAAGA
18942121 AAATGGATTAAGGCTCAAAATGGGTACTAGGGAAAATATTTACGACATAGCTTTTTGGCTTGAAA
1 AAATGGATTAAGGCTCAAAATGGGTACTAGGGAAAATATTTACGACATAGCTTTTTGGCTTGAAA
18942186 ATTGTCTACCAAACAATGTCTTAGGTTGTCCTTAGGTAATTCTATACATGGATTAAATCGGCCAA
66 ATTGTCTACCAAACAATGTCTTAGGTTGTCCTTAGGTAATTCTATACATGGATTAAATCGGCCAA
18942251 GTCTATAAATTTCTACAACCTATAATTCAATTAAACATGCATGCTATTTATATACCTATTTATCA
131 GTCTATAAATTTCTACAACCTATAATTCAATTAAACATGCATGCTATTTATATACCTATTTATCA
18942316 TGTCGTATGCTTGTTGGAAAATCAGGTTTGGAAAATGCAACGAAAAATAAATTTAGGGAAAAAAA
196 TGTCGTATGCTTGTTGGAAAATCAGGTTTGGAAAATGCAACGAAAAATAAATTTAGGGAAAAAAA
18942381 ACCAGAGTTTTAAAAAAATTTCAAAAGAAGAACTTGGTTGTGATATCTAAAGTAATAAACACTTA
261 ACCAGAGTTTTAAAAAAATTTCAAAAGAAGAACTTGGTTGTGATATCTAAAGTAATAAACACTTA
18942446 ATCAAAATTGTTCCTTTTTTATTTGTCTAGGATGAACGCTTCGACCAAGTAGTCTTCTCCATTAC
326 ATCAAAATTGTTCCTTTTTTATTTGTCTAGGATGAACGCTTCGACCAAGTAGTCTTCTCCATTAC
18942511 CCTCAAGCTCACGTCTGTCGAGTGTGGGCTCGCTTCGAATTAGAATTTTTTTCACAAAATTACCA
391 CCTCAAGCTCACGTCTGTCGAGTGTGGGCTCGCTTCGAATTAGAATTTTTTTCACAAAATTACCA
18942576 GTGGGGTAATTCCTAAATTTCTCTAAACTTTTGGGCCAACTTGTAAAGAAGAAAAATATCTCTAG
456 GTGGGGTAATTCCTAAATTTCTCTAAACTTTTGGGCCAACTTGTAAAGAAGAAAAATATCTCTAG
18942641 AAATTCTTTGAAACAAATTCTTCAGAGAATTTTCTCTCTACAAGTTTCTTTTAAATTCAAGTGTG
521 AAATTCTTTGAAACAAATTCTTCAGAGAATTTTCTCTCTACAAGTTTCTTTTAAATTCAAGTGTG
18942706 TGTAAATAATAACTCAATACTCTCTTTATATAGGAAGAGTTTAGAGAGTTCAACTATGATTAAAT
586 TGTAAATAATAACTCAATACTCTCTTTATATAGGAAGAGTTTAGAGAGTTCAACTATGATTAAAT
18942771 TTAATCACTTTTAATATTAAATTAATATAATATTTATCATTAAATTTAATATTAAATCTTGTTAA
651 TTAATCACTTTTAATATTAAATTAATATAATATTTATCATTAAATTTAATATTAAATCTTGTTAA
18942836 ATATATATAATATTTATCTACGAGATAAACATTAAATTAAATTTAATATTAAGATAATCACTTTA
716 ATATATATAATATTTATCTACGAGATAAACATTAAATTAAATTTAATATTAAGATAATCACTTTA
18942901 ATATTAAATTAATAAAATACTATTAAGATAAGTATAAAATTTAATATAACATTCAATCTATTAAA
781 ATATTAAATTAATAAAATACTATTAAGATAAGTATAAAATTTAATATAACATTCAATCTATTAAA
18942966 ATAATATTATTC
846 ATAATATTATTC
18942978 AAATGGATTAAGGCTCAAAATGGGTACTAGGGAAAATATTTACGACATAGCTTTTTGGCTTGAAA
1 AAATGGATTAAGGCTCAAAATGGGTACTAGGGAAAATATTTACGACATAGCTTTTTGGCTTGAAA
18943043 ATTGTCTACCAAACAATGTCTTAGGTTGTCCTTAGGTAATTCTATACATGGATTAAATCGGCCAA
66 ATTGTCTACCAAACAATGTCTTAGGTTGTCCTTAGGTAATTCTATACATGGATTAAATCGGCCAA
18943108 GTCTATAAATTTCTACAACCTATAATTCAATTAAACATGCATGCTATTTATATACCTATTTATCA
131 GTCTATAAATTTCTACAACCTATAATTCAATTAAACATGCATGCTATTTATATACCTATTTATCA
18943173 TGTCGTATGCTTGTTGGAAAATCAGGTTTGGAAAATGCAACGAAAAATAAATTTAGGGAAAAAAA
196 TGTCGTATGCTTGTTGGAAAATCAGGTTTGGAAAATGCAACGAAAAATAAATTTAGGGAAAAAAA
18943238 ACCAGAGTTTTAAAAAAATTTCAAAAGAAGAACTTGGTTGTGATATCTAAAGTAATAAACACTTA
261 ACCAGAGTTTTAAAAAAATTTCAAAAGAAGAACTTGGTTGTGATATCTAAAGTAATAAACACTTA
18943303 ATCAAAATTGTTCCTTTTTTATTTGTCTAGGATGAACGCTTCGACCAAGTAGTCTTCTCCATTAC
326 ATCAAAATTGTTCCTTTTTTATTTGTCTAGGATGAACGCTTCGACCAAGTAGTCTTCTCCATTAC
18943368 CCTCAAGCTCACGTCTGTCGAGTGTGGGCTCGCTTCGAATTAGAATTTTTTTCACAAAATTACCA
391 CCTCAAGCTCACGTCTGTCGAGTGTGGGCTCGCTTCGAATTAGAATTTTTTTCACAAAATTACCA
18943433 GTGGGGTAATTCCTAAATTTCTCTAAACTTTTGGGCCAACTTGTAAAGAAGAAAAATATCTCTAG
456 GTGGGGTAATTCCTAAATTTCTCTAAACTTTTGGGCCAACTTGTAAAGAAGAAAAATATCTCTAG
18943498 AAATTCTTTGAAACAAATTCTTCAGAGAATTTTCTCTCTACAAGTTTCTTTTAAATTCAAGTGTG
521 AAATTCTTTGAAACAAATTCTTCAGAGAATTTTCTCTCTACAAGTTTCTTTTAAATTCAAGTGTG
18943563 TGTAAATAATAACTCAATACTCTCTTTATATAGGAAGAGTTTAGAGAGTTCAACTATGATTAAAT
586 TGTAAATAATAACTCAATACTCTCTTTATATAGGAAGAGTTTAGAGAGTTCAACTATGATTAAAT
18943628 TTAATCACTTTTAATATTAAATTAATATAATATTTATCATTAAATTTAATATTAAATCTTGTTAA
651 TTAATCACTTTTAATATTAAATTAATATAATATTTATCATTAAATTTAATATTAAATCTTGTTAA
18943693 ATATATATAATATTTATCTACGAGATAAACATTAAATTAAATTTAATATTAAGATAATCACTTTA
716 ATATATATAATATTTATCTACGAGATAAACATTAAATTAAATTTAATATTAAGATAATCACTTTA
18943758 ATATTAAATTAATAAAATACTATTAAGATAAGTATAAAATTTAATATAACATTCAATCTATTAAA
781 ATATTAAATTAATAAAATACTATTAAGATAAGTATAAAATTTAATATAACATTCAATCTATTAAA
18943823 ATAATATTATTC
846 ATAATATTATTC
18943835 TTGGAATAGT
Statistics
Matches: 857, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
857 857 1.00
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (857 bp):
AAATGGATTAAGGCTCAAAATGGGTACTAGGGAAAATATTTACGACATAGCTTTTTGGCTTGAAA
ATTGTCTACCAAACAATGTCTTAGGTTGTCCTTAGGTAATTCTATACATGGATTAAATCGGCCAA
GTCTATAAATTTCTACAACCTATAATTCAATTAAACATGCATGCTATTTATATACCTATTTATCA
TGTCGTATGCTTGTTGGAAAATCAGGTTTGGAAAATGCAACGAAAAATAAATTTAGGGAAAAAAA
ACCAGAGTTTTAAAAAAATTTCAAAAGAAGAACTTGGTTGTGATATCTAAAGTAATAAACACTTA
ATCAAAATTGTTCCTTTTTTATTTGTCTAGGATGAACGCTTCGACCAAGTAGTCTTCTCCATTAC
CCTCAAGCTCACGTCTGTCGAGTGTGGGCTCGCTTCGAATTAGAATTTTTTTCACAAAATTACCA
GTGGGGTAATTCCTAAATTTCTCTAAACTTTTGGGCCAACTTGTAAAGAAGAAAAATATCTCTAG
AAATTCTTTGAAACAAATTCTTCAGAGAATTTTCTCTCTACAAGTTTCTTTTAAATTCAAGTGTG
TGTAAATAATAACTCAATACTCTCTTTATATAGGAAGAGTTTAGAGAGTTCAACTATGATTAAAT
TTAATCACTTTTAATATTAAATTAATATAATATTTATCATTAAATTTAATATTAAATCTTGTTAA
ATATATATAATATTTATCTACGAGATAAACATTAAATTAAATTTAATATTAAGATAATCACTTTA
ATATTAAATTAATAAAATACTATTAAGATAAGTATAAAATTTAATATAACATTCAATCTATTAAA
ATAATATTATTC
Found at i:18946521 original size:9 final size:9
Alignment explanation
Indices: 18946507--18946552 Score: 56
Period size: 9 Copynumber: 5.1 Consensus size: 9
18946497 AACAGGGTAA
*
18946507 CCTCCTCCT
1 CCTCCTCAT
*
18946516 CCTCCTCTT
1 CCTCCTCAT
18946525 CCTCCTCAT
1 CCTCCTCAT
*
18946534 TCTCCTCAT
1 CCTCCTCAT
*
18946543 CCTCATCAT
1 CCTCCTCAT
18946552 C
1 C
18946553 ATCATCATCG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.09, C:0.54, G:0.00, T:0.37
Consensus pattern (9 bp):
CCTCCTCAT
Found at i:18960783 original size:21 final size:21
Alignment explanation
Indices: 18960758--18960807 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
18960748 AATGCTTTAA
* *
18960758 TGTGAACATGGTAATGTCAAG
1 TGTGAACATGATAATGGCAAG
* *
18960779 TGTGAACATGATTATGGCATG
1 TGTGAACATGATAATGGCAAG
18960800 TGTGAACA
1 TGTGAACA
18960808 CCATTAGATA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.32, C:0.10, G:0.28, T:0.30
Consensus pattern (21 bp):
TGTGAACATGATAATGGCAAG
Found at i:18963545 original size:21 final size:21
Alignment explanation
Indices: 18963502--18963555 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
18963492 CTAAAACAAG
* *
18963502 AAAGAGAGAGAATCTAAAGAA
1 AAAGAAAGAAAATCTAAAGAA
18963523 AAAGAAAGAAAAT-TAAAGTAA
1 AAAGAAAGAAAATCTAAAG-AA
*
18963544 AAATAAAGAAAA
1 AAAGAAAGAAAA
18963556 AATAGTGGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 5 0.17
21 24 0.83
ACGTcount: A:0.70, C:0.02, G:0.17, T:0.11
Consensus pattern (21 bp):
AAAGAAAGAAAATCTAAAGAA
Found at i:18963559 original size:11 final size:10
Alignment explanation
Indices: 18963516--18963556 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
18963506 AGAGAGAATC
18963516 TAAAGAAAAA
1 TAAAGAAAAA
* *
18963526 GAAAGAAAAT
1 TAAAGAAAAA
18963536 TAAAGTAAAAA
1 TAAAG-AAAAA
18963547 TAAAGAAAAA
1 TAAAGAAAAA
18963557 ATAGTGGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
10 17 0.65
11 9 0.35
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (10 bp):
TAAAGAAAAA
Found at i:18963641 original size:31 final size:32
Alignment explanation
Indices: 18963606--18963667 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
18963596 GAGGTTGAGA
* *
18963606 ATTGTG-AGAAAGAAATG-AAAAAGGAAAAGAG
1 ATTGTGAAGAAAAAAAAGCAAAAA-GAAAAGAG
18963637 ATTGTGAAGAAAAAAAAGCAAAAAGAAAAGA
1 ATTGTGAAGAAAAAAAAGCAAAAAGAAAAGA
18963668 AAGTCTTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
31 6 0.22
32 16 0.59
33 5 0.19
ACGTcount: A:0.63, C:0.02, G:0.24, T:0.11
Consensus pattern (32 bp):
ATTGTGAAGAAAAAAAAGCAAAAAGAAAAGAG
Found at i:18972923 original size:43 final size:44
Alignment explanation
Indices: 18972861--18972947 Score: 140
Period size: 43 Copynumber: 2.0 Consensus size: 44
18972851 TTATGCAAAA
* * *
18972861 AAAAAATGAATTTAAAAAGAGGAGAAGATAAGCTTGGGTTGTTG
1 AAAAAATGAATTTAAAAAGAGGAAAAGATAAACATGGGTTGTTG
18972905 AAAAAA-GAATTTAAAAAGAGGAAAAGATAAACATGGGTTGTTG
1 AAAAAATGAATTTAAAAAGAGGAAAAGATAAACATGGGTTGTTG
18972948 GATTTACCCT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
43 34 0.85
44 6 0.15
ACGTcount: A:0.49, C:0.02, G:0.25, T:0.23
Consensus pattern (44 bp):
AAAAAATGAATTTAAAAAGAGGAAAAGATAAACATGGGTTGTTG
Found at i:18977440 original size:20 final size:19
Alignment explanation
Indices: 18977411--18977449 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
18977401 ATATTATAAG
18977411 AAAAACAATAGAAA-AAGAA
1 AAAAACAATA-AAAGAAGAA
18977430 AAAAACTAATAAAAGAAGAA
1 AAAAAC-AATAAAAGAAGAA
18977450 GAGAAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.77, C:0.05, G:0.10, T:0.08
Consensus pattern (19 bp):
AAAAACAATAAAAGAAGAA
Found at i:18979761 original size:48 final size:48
Alignment explanation
Indices: 18979581--18979761 Score: 245
Period size: 48 Copynumber: 3.8 Consensus size: 48
18979571 GGTAGCCTAT
* * * ** * * *
18979581 ACATAGTCCGTACCACCTTTGTGTAATAACAGACTCTTGGTGGCCTAC
1 ACATAGTCCGTGCCACCCTTGTATCTTAACAGAATATTGGTGGCCTGC
18979629 ACATAGTCCGTGCCACCCTTGTATCTTAACAGAATATTGGTGGCCTGC
1 ACATAGTCCGTGCCACCCTTGTATCTTAACAGAATATTGGTGGCCTGC
* * *
18979677 ACATAGTCCGTGCCACCCTTGTATCTTAATAAAATATTGGTGGCTTGC
1 ACATAGTCCGTGCCACCCTTGTATCTTAACAGAATATTGGTGGCCTGC
* *
18979725 ACACAGTCCGTGCCACCCTTGTATCTTAAGAGAATAT
1 ACATAGTCCGTGCCACCCTTGTATCTTAACAGAATAT
18979762 CGGTATGCAT
Statistics
Matches: 119, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 119 1.00
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (48 bp):
ACATAGTCCGTGCCACCCTTGTATCTTAACAGAATATTGGTGGCCTGC
Found at i:18986819 original size:27 final size:27
Alignment explanation
Indices: 18986755--18986821 Score: 107
Period size: 27 Copynumber: 2.5 Consensus size: 27
18986745 TTTCAAATAT
18986755 CTCATTAATATTTTATGTAAAAATAGA
1 CTCATTAATATTTTATGTAAAAATAGA
* * *
18986782 CTTAGTGATATTTTATGTAAAAATAGA
1 CTCATTAATATTTTATGTAAAAATAGA
18986809 CTCATTAATATTT
1 CTCATTAATATTT
18986822 CATTTCATAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.40, C:0.07, G:0.09, T:0.43
Consensus pattern (27 bp):
CTCATTAATATTTTATGTAAAAATAGA
Found at i:18988068 original size:3 final size:3
Alignment explanation
Indices: 18988060--18988115 Score: 69
Period size: 3 Copynumber: 18.7 Consensus size: 3
18988050 TATGTATTGA
* *
18988060 AAT AAT AAT AAC CAT AAT AAT AAT AAT AAT AAAT AAT AAT AAT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT
*
18988105 AGT AAT AAT AA
1 AAT AAT AAT AA
18988116 CAATTTAATA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
2 2 0.04
3 40 0.89
4 3 0.07
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:18988086 original size:21 final size:19
Alignment explanation
Indices: 18988060--18988115 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 19
18988050 TATGTATTGA
18988060 AATAATAATAACCATAATAAT
1 AATAATAATAA--ATAATAAT
18988081 AATAATAATAAATAATAAT
1 AATAATAATAAATAATAAT
*
18988100 AAT-ATAGT-AATAATAA
1 AATAATAATAAATAATAA
18988116 CAATTTAATA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
17 8 0.24
18 4 0.12
19 11 0.32
21 11 0.32
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (19 bp):
AATAATAATAAATAATAAT
Found at i:18989759 original size:100 final size:100
Alignment explanation
Indices: 18989621--18989929 Score: 447
Period size: 100 Copynumber: 3.1 Consensus size: 100
18989611 GACTTGCCAT
* * * * **
18989621 CTTCATTCTTTTAAATTACAATGTTGGGGAAACAAGATTCGTCGTCGTAGCTTCAATCTGTTCCA
1 CTTCAATCTTTTTAATTGCAATGTTGGGGAAACGAGATTCACCGTCGTAGCTTCAATCTGTTCCA
* * *
18989686 CTACACCGCCAGGGAAGTAAAATTCGCCGTTGCGG
66 CTACACCACCAGGGAAGTAAGATTCACCGTTGCGG
18989721 CTTCAATCTTTTTAATTGCAATGTTGGGGAAACGAGATTCACCGTCGTAGCTTCAATCTGTTCCA
1 CTTCAATCTTTTTAATTGCAATGTTGGGGAAACGAGATTCACCGTCGTAGCTTCAATCTGTTCCA
** *
18989786 CTACACCACCAGGGAAGTAAGATTTTCTGTTGCGG
66 CTACACCACCAGGGAAGTAAGATTCACCGTTGCGG
* * *
18989821 CTTCAATCTTTTTAATTGCAATGTTGTGGAAACGAGATTCACCGTCGTAGCTTCAATTTGTTCTA
1 CTTCAATCTTTTTAATTGCAATGTTGGGGAAACGAGATTCACCGTCGTAGCTTCAATCTGTTCCA
* * *
18989886 CTACGCCTCCAGGGGAGTAAGATTCACCGTTGCGG
66 CTACACCACCAGGGAAGTAAGATTCACCGTTGCGG
*
18989921 CTTAAATCT
1 CTTCAATCT
18989930 GCTCCACTGT
Statistics
Matches: 188, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
100 188 1.00
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (100 bp):
CTTCAATCTTTTTAATTGCAATGTTGGGGAAACGAGATTCACCGTCGTAGCTTCAATCTGTTCCA
CTACACCACCAGGGAAGTAAGATTCACCGTTGCGG
Found at i:18989774 original size:50 final size:50
Alignment explanation
Indices: 18989720--18989877 Score: 127
Period size: 50 Copynumber: 3.2 Consensus size: 50
18989710 CGCCGTTGCG
18989720 GCTTCAATCTTTTTAATTGCAATGTTGGGGAAACGAGATTCACCGTCGTA
1 GCTTCAATCTTTTTAATTGCAATGTTGGGGAAACGAGATTCACCGTCGTA
* ** * * ****** *** ** * * **
18989770 GCTTCAATCTGTTCCACTACACCACCAGGGAAGTAAGATTTTCTGTTGCG
1 GCTTCAATCTTTTTAATTGCAATGTTGGGGAAACGAGATTCACCGTCGTA
*
18989820 GCTTCAATCTTTTTAATTGCAATGTTGTGGAAACGAGATTCACCGTCGTA
1 GCTTCAATCTTTTTAATTGCAATGTTGGGGAAACGAGATTCACCGTCGTA
18989870 GCTTCAAT
1 GCTTCAAT
18989878 TTGTTCTACT
Statistics
Matches: 67, Mismatches: 41, Indels: 0
0.62 0.38 0.00
Matches are distributed among these distances:
50 67 1.00
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (50 bp):
GCTTCAATCTTTTTAATTGCAATGTTGGGGAAACGAGATTCACCGTCGTA
Found at i:18990260 original size:267 final size:268
Alignment explanation
Indices: 18989794--18990344 Score: 791
Period size: 267 Copynumber: 2.1 Consensus size: 268
18989784 CACTACACCA
* * * * *
18989794 CCAGGGAAGTAAGATTTTCTGTTGCGGCTTCAATCTTTTTAATTGCAATGTTGTGGAAACGAGAT
1 CCAGGGAAGTAAGATTGTCTGTTGCGGCTTCAATATTTTAAATTACAATGTTGGGGAAACGAGAT
* * * * *
18989859 TCACCGTCGTAGCTTCAATTTGTTCTACTACGCCTCCAGGGGAGTAAGATTCACCGTTGCGGCTT
66 TCACCGTCGTAGCTTCAATCTGTTCCACTACACCACCAGGGGAGTAAGATTCACCGTTGCAGCTT
**
18989924 AAATCTGCTCCACTGTAATGCCAAAGAGATAGGATTCACTGCCCACAGCTTCAATTTGCTCCACT
131 AAATCTGCTCCACTGTAATGCCAAAGAGATAGGATTCACTGCCCACAGCTTCAATCCGCTCCACT
* * * * *
18989989 TCAGCTAATCCAAGCCTTAACGCCAGGGAGATAAGATTCGCTGTAGT-GGCTTCAATGTGCTCCG
196 TCAGCTAATCCAAGCCTTAACGCCAGGGAGATAAGATTCGCTGCACTCAGCTTCAATCTACTCCG
18990053 CTACAATG
261 CTACAATG
* *
18990061 CCAGGGAAATAAGATTCGTC-GTTGCGGCTTCAATATTTTAAATTACAATGTTGGGGAAATGAGA
1 CCAGGGAAGTAAGATT-GTCTGTTGCGGCTTCAATATTTTAAATTACAATGTTGGGGAAACGAGA
* *
18990125 TTCACCGTCGTAGCTTCAATCTGTTCCACTACACCACCAGGGGAGTAAGATTCGCTGTTGCAGCT
65 TTCACCGTCGTAGCTTCAATCTGTTCCACTACACCACCAGGGGAGTAAGATTCACCGTTGCAGCT
* * * * *
18990190 TTAATCTGCTCCACTGTAATGCCAAATAGATAGGATTCGCTGCCCACAGCTTTAATCCGCTCCGC
130 TAAATCTGCTCCACTGTAATGCCAAAGAGATAGGATTCACTGCCCACAGCTTCAATCCGCTCCAC
* * * * *
18990255 TTCAGCTATTTCAAGTCTTAACGCCAGGGAGATAAGATTCGCTGCCCTCAGCTTTAATCTACTCC
195 TTCAGCTAATCCAAGCCTTAACGCCAGGGAGATAAGATTCGCTGCACTCAGCTTCAATCTACTCC
18990320 GCTACAATG
260 GCTACAATG
*
18990329 TCAGGGAAGTAAGATT
1 CCAGGGAAGTAAGATT
18990345 TGCCATTTTG
Statistics
Matches: 249, Mismatches: 33, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
267 212 0.85
268 37 0.15
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (268 bp):
CCAGGGAAGTAAGATTGTCTGTTGCGGCTTCAATATTTTAAATTACAATGTTGGGGAAACGAGAT
TCACCGTCGTAGCTTCAATCTGTTCCACTACACCACCAGGGGAGTAAGATTCACCGTTGCAGCTT
AAATCTGCTCCACTGTAATGCCAAAGAGATAGGATTCACTGCCCACAGCTTCAATCCGCTCCACT
TCAGCTAATCCAAGCCTTAACGCCAGGGAGATAAGATTCGCTGCACTCAGCTTCAATCTACTCCG
CTACAATG
Found at i:18990446 original size:168 final size:168
Alignment explanation
Indices: 18990201--18990512 Score: 561
Period size: 168 Copynumber: 1.9 Consensus size: 168
18990191 TAATCTGCTC
* *
18990201 CACTGTAATGCCAAATAGATAGGATTCGCTGCCCACAGCTTTAATCCGCTCCGCTTCAGCTATTT
1 CACTGTAATGCCAAAGAGATAGAATTCGCTGCCCACAGCTTTAATCCGCTCCGCTTCAGCTATTT
* *
18990266 CAAGTCTTAACGCCAGGGAGATAAGATTCGCTGCCCTCAGCTTTAATCTACTCCGCTACAATGTC
66 CAAGTCTTAACGCCAGAGAGATAAGATTCGCTGCCCTCAGCTTTAATCTACTCCGCTACAACGTC
18990331 AGGGAAGTAAGATTTGCCATTTTGGCTTTATTCTATTT
131 AGGGAAGTAAGATTTGCCATTTTGGCTTTATTCTATTT
18990369 CACTGTAATGCCAAAGAGATAGAATTCGCTGCCCACAGCTTTAATCCGCTCCGCTTCAGCTATTT
1 CACTGTAATGCCAAAGAGATAGAATTCGCTGCCCACAGCTTTAATCCGCTCCGCTTCAGCTATTT
* * *
18990434 CAAGTCTTAACGCTAGAGAGATAAGATTCGCTGCCCTCAGCTTTAATCTGCTCCGCTATAACGTC
66 CAAGTCTTAACGCCAGAGAGATAAGATTCGCTGCCCTCAGCTTTAATCTACTCCGCTACAACGTC
18990499 AGGGAAGTAAGATT
131 AGGGAAGTAAGATT
18990513 CACAATCTTC
Statistics
Matches: 137, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
168 137 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.29
Consensus pattern (168 bp):
CACTGTAATGCCAAAGAGATAGAATTCGCTGCCCACAGCTTTAATCCGCTCCGCTTCAGCTATTT
CAAGTCTTAACGCCAGAGAGATAAGATTCGCTGCCCTCAGCTTTAATCTACTCCGCTACAACGTC
AGGGAAGTAAGATTTGCCATTTTGGCTTTATTCTATTT
Found at i:18990605 original size:44 final size:44
Alignment explanation
Indices: 18990512--18990687 Score: 246
Period size: 44 Copynumber: 4.0 Consensus size: 44
18990502 GAAGTAAGAT
* *
18990512 TCACAATCTTCAACCTATTCCGCTG-TAACCGGGGAGATAGGAC
1 TCACAATCTTCAACCTATTCCACTGCTAACCAGGGAGATAGGAC
*
18990555 TCACAATCTTCAACCTATTCCACTGCTAACCAGGGAGATAGGAT
1 TCACAATCTTCAACCTATTCCACTGCTAACCAGGGAGATAGGAC
* * * *
18990599 TTACAATTTTCAAACTATTCCACTGCTGACCAGGGAGATAGGAC
1 TCACAATCTTCAACCTATTCCACTGCTAACCAGGGAGATAGGAC
* * * *
18990643 TTACAATTTTCAACCTATTCCACTACTGACCAGGGAGATAGGAC
1 TCACAATCTTCAACCTATTCCACTGCTAACCAGGGAGATAGGAC
18990687 T
1 T
18990688 GGGGTCATCG
Statistics
Matches: 122, Mismatches: 10, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
43 24 0.20
44 98 0.80
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (44 bp):
TCACAATCTTCAACCTATTCCACTGCTAACCAGGGAGATAGGAC
Found at i:18994763 original size:29 final size:29
Alignment explanation
Indices: 18994721--18994779 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
18994711 CAGGTCTTTA
18994721 GTTTTTGATCGAGTACCGTAGCAGTGTTT
1 GTTTTTGATCGAGTACCGTAGCAGTGTTT
18994750 GTTTTTGATCGAGTACCGTAGCAGTGTTT
1 GTTTTTGATCGAGTACCGTAGCAGTGTTT
18994779 G
1 G
18994780 GTAGGTTGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.17, C:0.14, G:0.29, T:0.41
Consensus pattern (29 bp):
GTTTTTGATCGAGTACCGTAGCAGTGTTT
Found at i:18996773 original size:18 final size:18
Alignment explanation
Indices: 18996740--18996794 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
18996730 TATAGGTATC
*
18996740 TAAAAA-AAATAGATAAA
1 TAAAAATAAATAAATAAA
18996757 -AATAAATAAATAAATAAA
1 TAA-AAATAAATAAATAAA
* * *
18996775 TAAAATTAACTACATAAA
1 TAAAAATAAATAAATAAA
18996793 TA
1 TA
18996795 TTATAAAACA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
16 2 0.06
17 3 0.10
18 24 0.77
19 2 0.06
ACGTcount: A:0.71, C:0.04, G:0.02, T:0.24
Consensus pattern (18 bp):
TAAAAATAAATAAATAAA
Found at i:18996777 original size:22 final size:22
Alignment explanation
Indices: 18996746--18996794 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
18996736 TATCTAAAAA
*
18996746 AAATAGATAAAAATAAATAAAT
1 AAATAAATAAAAATAAATAAAT
* * *
18996768 AAATAAATAAAATTAACTACAT
1 AAATAAATAAAAATAAATAAAT
18996790 AAATA
1 AAATA
18996795 TTATAAAACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.24
Consensus pattern (22 bp):
AAATAAATAAAAATAAATAAAT
Found at i:18996964 original size:3 final size:3
Alignment explanation
Indices: 18996956--18996999 Score: 52
Period size: 3 Copynumber: 14.3 Consensus size: 3
18996946 TATGTATTGA
* * *
18996956 AAT AAT AAT AAT AAC CAT AAT AAT AAT AAAT ACT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT A
18997000 CAGTAATATT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
3 31 0.91
4 3 0.09
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:18998277 original size:48 final size:48
Alignment explanation
Indices: 18998220--18998410 Score: 258
Period size: 48 Copynumber: 4.0 Consensus size: 48
18998210 CAAATTTCTC
* * * * ** *
18998220 GGTGGCCTACACACAGTTCGTACCACCTTTGTGTAATAACA-AACTCTT
1 GGTGGCCTACACACAGTCCGTGCCACCCTTGTATCTTAACAGAA-TATT
* *
18998268 GGTGGCCTACACATAGTTCGTGCCACCCTTGTATCTTAACAGAATATT
1 GGTGGCCTACACACAGTCCGTGCCACCCTTGTATCTTAACAGAATATT
*
18998316 GGTGGCCTGCACACAGTCCGTGCCACCCTTGTATCTTAACAGAATATT
1 GGTGGCCTACACACAGTCCGTGCCACCCTTGTATCTTAACAGAATATT
* *
18998364 GGTGGCCTGCACACAGTCCGTGCCACCCCTGTATCTTAACAGAATAT
1 GGTGGCCTACACACAGTCCGTGCCACCCTTGTATCTTAACAGAATAT
18998411 CGACACGCAT
Statistics
Matches: 131, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
48 129 0.98
49 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
GGTGGCCTACACACAGTCCGTGCCACCCTTGTATCTTAACAGAATATT
Found at i:18998456 original size:57 final size:57
Alignment explanation
Indices: 18998368--18998503 Score: 236
Period size: 57 Copynumber: 2.4 Consensus size: 57
18998358 AATATTGGTG
** *
18998368 GCCTGCACACAGTCCGTGCCACCCCTGTATCTTAACAGAATATCGACACGCATAGTA
1 GCCTGCACTTAGTTCGTGCCACCCCTGTATCTTAACAGAATATCGACACGCATAGTA
*
18998425 GCCTGCACTTAGTTCGTGCCACCCCTGTATCTTAACATAATATCGACACGCATAGTA
1 GCCTGCACTTAGTTCGTGCCACCCCTGTATCTTAACAGAATATCGACACGCATAGTA
18998482 GCCTGCACTTAGTTCGTGCCAC
1 GCCTGCACTTAGTTCGTGCCAC
18998504 GTATGCGACC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 75 1.00
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (57 bp):
GCCTGCACTTAGTTCGTGCCACCCCTGTATCTTAACAGAATATCGACACGCATAGTA
Found at i:19000203 original size:43 final size:44
Alignment explanation
Indices: 19000136--19000223 Score: 133
Period size: 43 Copynumber: 2.0 Consensus size: 44
19000126 TTTTATGCTA
**
19000136 GAAAAAATAAATTTAAAAACAGGAGAAGATAAACTTGGGTTGTT
1 GAAAAAATAAATTTAAAAACAGGAGAAGATAAACAGGGGTTGTT
* *
19000180 GAAAAAA-GAATTTAAAAAGAGGAGAAGATAAACAGGGGTTGTT
1 GAAAAAATAAATTTAAAAACAGGAGAAGATAAACAGGGGTTGTT
19000223 G
1 G
19000224 GATTTACCTT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
43 33 0.82
44 7 0.17
ACGTcount: A:0.50, C:0.03, G:0.25, T:0.22
Consensus pattern (44 bp):
GAAAAAATAAATTTAAAAACAGGAGAAGATAAACAGGGGTTGTT
Found at i:19008086 original size:21 final size:22
Alignment explanation
Indices: 19008055--19008095 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
19008045 TCTAAGGATC
*
19008055 ATTTTTCTCCAATTGTCCCCCA
1 ATTTTTCTCCAATTCTCCCCCA
19008077 ATTTTT-TCCAATTCTCCCC
1 ATTTTTCTCCAATTCTCCCC
19008096 GTTTTTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.17, C:0.37, G:0.02, T:0.44
Consensus pattern (22 bp):
ATTTTTCTCCAATTCTCCCCCA
Found at i:19017414 original size:27 final size:27
Alignment explanation
Indices: 19017321--19017419 Score: 121
Period size: 27 Copynumber: 3.6 Consensus size: 27
19017311 TGTCAAGAAG
19017321 GAATAGCCTTT-TGTGTCAAACTCT-ATAA
1 GAATAGCCTTTATG-G-CAAACTCTGA-AA
* **
19017349 GAATAGCCTTTGTGGTGAACTCTGAAA
1 GAATAGCCTTTATGGCAAACTCTGAAA
*
19017376 GAATAGACTTTATGGCAAACTCTGAAA
1 GAATAGCCTTTATGGCAAACTCTGAAA
19017403 GAATAGCCTTTATGGCA
1 GAATAGCCTTTATGGCA
19017420 TTCTCCCAAT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
27 47 0.76
28 13 0.21
29 2 0.03
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.30
Consensus pattern (27 bp):
GAATAGCCTTTATGGCAAACTCTGAAA
Found at i:19017615 original size:88 final size:88
Alignment explanation
Indices: 19017466--19017637 Score: 299
Period size: 88 Copynumber: 2.0 Consensus size: 88
19017456 GAACTCTTAA
*
19017466 AACTTTGAAGGGATATAGAGAAGTAATGGGTTAATATTGAAAATATATGCTGGATAAGGATGTGA
1 AACTTTGAAGGGATATAGAGAAGTAATGGGTTAATATTGAAAATATATGCTGAATAAGGATGTGA
* *
19017531 ACTTTGTATGTTCGAAGGATGTG
66 ACTTAGCATGTTCGAAGGATGTG
* *
19017554 AACTTTGAAGGGATATAGAGAATTAATGGGTTAATATTGAAAATGTATGCTGAATAAGGATGTGA
1 AACTTTGAAGGGATATAGAGAAGTAATGGGTTAATATTGAAAATATATGCTGAATAAGGATGTGA
19017619 ACTTAGCATGTTCGAAGGA
66 ACTTAGCATGTTCGAAGGA
19017638 AGTACCTGCC
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 79 1.00
ACGTcount: A:0.37, C:0.05, G:0.27, T:0.31
Consensus pattern (88 bp):
AACTTTGAAGGGATATAGAGAAGTAATGGGTTAATATTGAAAATATATGCTGAATAAGGATGTGA
ACTTAGCATGTTCGAAGGATGTG
Found at i:19019274 original size:41 final size:41
Alignment explanation
Indices: 19019227--19019335 Score: 139
Period size: 41 Copynumber: 2.7 Consensus size: 41
19019217 GTCCGAAATG
** *
19019227 TATCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAATTA
1 TATCACCGGCATTAAGCCTGCTAGACACAAAGCCTGAATTA
* *
19019268 -ATTCACCGGCATTAAGCCTGCTAGGCACATAGCCTGAATTA
1 TA-TCACCGGCATTAAGCCTGCTAGACACAAAGCCTGAATTA
**
19019309 TATCACCGGCATCCAGCCTGCTAGACA
1 TATCACCGGCATTAAGCCTGCTAGACA
19019336 ATAAGTCTGA
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
40 1 0.02
41 56 0.97
42 1 0.02
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (41 bp):
TATCACCGGCATTAAGCCTGCTAGACACAAAGCCTGAATTA
Found at i:19024599 original size:21 final size:21
Alignment explanation
Indices: 19024573--19024613 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
19024563 TAGTTCCTTT
*
19024573 TTCTTTGAAAAT-TTCTAAAAA
1 TTCTTT-AAAATATTATAAAAA
19024594 TTCTTTAAAATATTATAAAA
1 TTCTTTAAAATATTATAAAA
19024614 CTTTTAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.46, C:0.07, G:0.02, T:0.44
Consensus pattern (21 bp):
TTCTTTAAAATATTATAAAAA
Found at i:19024864 original size:38 final size:37
Alignment explanation
Indices: 19024822--19024898 Score: 136
Period size: 38 Copynumber: 2.1 Consensus size: 37
19024812 TTTATCTCTT
*
19024822 GTTCTTTCAATAAGTTAACTTTTTGGGTTATAATCAGA
1 GTTCTTTCAATAAGTCAACTTTTTGGGTTATAAT-AGA
19024860 GTTCTTTCAATAAGTCAACTTTTTGGGTTATAATAGA
1 GTTCTTTCAATAAGTCAACTTTTTGGGTTATAATAGA
19024897 GT
1 GT
19024899 ATTTATTATT
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
37 5 0.13
38 33 0.87
ACGTcount: A:0.29, C:0.10, G:0.17, T:0.44
Consensus pattern (37 bp):
GTTCTTTCAATAAGTCAACTTTTTGGGTTATAATAGA
Found at i:19030978 original size:16 final size:16
Alignment explanation
Indices: 19030957--19031008 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
19030947 TTTGGTTCGC
19030957 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
19030973 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
19030989 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
19031005 TGTA
1 TGTA
19031009 ATAGCAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.29, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:19031094 original size:39 final size:43
Alignment explanation
Indices: 19030989--19031098 Score: 129
Period size: 45 Copynumber: 2.6 Consensus size: 43
19030979 GGATTAGAGG
19030989 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT--A
* * ***
19031034 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGG-T-
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
19031074 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
19031099 TAATGGAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
39 20 0.35
40 2 0.04
43 1 0.02
44 11 0.19
45 23 0.40
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (43 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
Found at i:19031262 original size:16 final size:16
Alignment explanation
Indices: 19031225--19031266 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
19031215 TTAATCATAT
*
19031225 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
19031241 TT-AAATATATTATAA
1 TTAAAATATATTATAA
19031256 TTAAAATATAT
1 TTAAAATATAT
19031267 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:19031273 original size:14 final size:15
Alignment explanation
Indices: 19031234--19031275 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
19031224 TTTAAACATA
*
19031234 ATTATTATTAAATAT
1 ATTATAATTAAATAT
19031249 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
19031263 A-TATAATTTAATA
1 ATTATAATTAAATA
19031276 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:19034443 original size:18 final size:17
Alignment explanation
Indices: 19034414--19034465 Score: 76
Period size: 17 Copynumber: 3.3 Consensus size: 17
19034404 CTGGAGAAAA
19034414 CAAAGGAGAAAGCAAAG
1 CAAAGGAGAAAGCAAAG
19034431 CAAA-G-G-AAG-AAAG
1 CAAAGGAGAAAGCAAAG
19034444 CAAAGGAGAAAGCAAAG
1 CAAAGGAGAAAGCAAAG
19034461 CAAAG
1 CAAAG
19034466 AAAAGAAAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
13 8 0.26
14 4 0.13
15 2 0.06
16 4 0.13
17 13 0.42
ACGTcount: A:0.60, C:0.12, G:0.29, T:0.00
Consensus pattern (17 bp):
CAAAGGAGAAAGCAAAG
Found at i:19034448 original size:30 final size:30
Alignment explanation
Indices: 19034408--19034474 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 30
19034398 TGCCGACTGG
19034408 AGAAAACAAAGGAGAAAGCAAAGCAAAGGA
1 AGAAAACAAAGGAGAAAGCAAAGCAAAGGA
* *
19034438 AGAAAGCAAAGGAGAAAGCAAAGCAAAGAAA
1 AGAAAACAAAGGAGAAAGCAAAGCAAAG-GA
19034469 AGAAAA
1 AGAAAA
19034475 GAAAAGAAAC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
30 27 0.82
31 6 0.18
ACGTcount: A:0.66, C:0.09, G:0.25, T:0.00
Consensus pattern (30 bp):
AGAAAACAAAGGAGAAAGCAAAGCAAAGGA
Found at i:19034455 original size:12 final size:13
Alignment explanation
Indices: 19034427--19034460 Score: 61
Period size: 12 Copynumber: 2.7 Consensus size: 13
19034417 AGGAGAAAGC
19034427 AAAGCAAAGGAAG
1 AAAGCAAAGGAAG
19034440 AAAGCAAAGG-AG
1 AAAGCAAAGGAAG
19034452 AAAGCAAAG
1 AAAGCAAAG
19034461 CAAAGAAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.62, C:0.09, G:0.29, T:0.00
Consensus pattern (13 bp):
AAAGCAAAGGAAG
Found at i:19034470 original size:10 final size:10
Alignment explanation
Indices: 19034408--19034483 Score: 50
Period size: 10 Copynumber: 7.5 Consensus size: 10
19034398 TGCCGACTGG
19034408 AGAAAA-CAA
1 AGAAAAGCAA
19034417 AGGAGAAAGCAA
1 A-GA-AAAGCAA
* *
19034429 AGCAAAG-GA
1 AGAAAAGCAA
19034438 AG-AAAGCAA
1 AGAAAAGCAA
19034447 AGGAGAAAGCAA
1 A-GA-AAAGCAA
* *
19034459 AGCAAAGAAA
1 AGAAAAGCAA
*
19034469 AGAAAAGAAA
1 AGAAAAGCAA
19034479 AGAAA
1 AGAAA
19034484 CGGAGGGAGC
Statistics
Matches: 54, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
8 4 0.07
9 6 0.11
10 27 0.50
11 5 0.09
12 12 0.22
ACGTcount: A:0.67, C:0.08, G:0.25, T:0.00
Consensus pattern (10 bp):
AGAAAAGCAA
Found at i:19035379 original size:18 final size:18
Alignment explanation
Indices: 19035338--19035380 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
19035328 ACACATAAAT
19035338 AAATAAATATCAAATAAGA
1 AAAT-AATATCAAATAAGA
*
19035357 CAATAATATC-AATAATGA
1 AAATAATATCAAATAA-GA
19035375 AAATAA
1 AAATAA
19035381 ATTATAAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 5 0.24
18 13 0.62
19 3 0.14
ACGTcount: A:0.65, C:0.07, G:0.05, T:0.23
Consensus pattern (18 bp):
AAATAATATCAAATAAGA
Found at i:19036687 original size:9 final size:9
Alignment explanation
Indices: 19036670--19036704 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
19036660 GTATATAGAT
*
19036670 AAAACAAAA
1 AAAATAAAA
19036679 AAAATAAAA
1 AAAATAAAA
19036688 AAAATAAAA
1 AAAATAAAA
19036697 AAAATAAA
1 AAAATAAA
19036705 TGAATAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.89, C:0.03, G:0.00, T:0.09
Consensus pattern (9 bp):
AAAATAAAA
Found at i:19043757 original size:28 final size:28
Alignment explanation
Indices: 19043726--19043851 Score: 107
Period size: 28 Copynumber: 4.5 Consensus size: 28
19043716 CCGTTAGGAT
*
19043726 TATCTCATATGTGGAAGTTCATCAAGAC
1 TATCTTATATGTGGAAGTTCATCAAGAC
* * *
19043754 TATCTTATATGTGGAAGTAT-GTTAGGAAC
1 TATCTTATATGTGGAAGT-TCATCAAG-AC
* *
19043783 -ATCTTA-ATGGGGAAGTCCATCAAGAC
1 TATCTTATATGTGGAAGTTCATCAAGAC
* *
19043809 TAACTTATATGTGGAAG-TCTATCAGGAC
1 TATCTTATATGTGGAAGTTC-ATCAAGAC
* *
19043837 TATCATATAAGTGGA
1 TATCTTATATGTGGA
19043852 GATCTTTCAA
Statistics
Matches: 76, Mismatches: 16, Indels: 12
0.73 0.15 0.12
Matches are distributed among these distances:
26 2 0.03
27 18 0.24
28 53 0.70
29 3 0.04
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.32
Consensus pattern (28 bp):
TATCTTATATGTGGAAGTTCATCAAGAC
Found at i:19043810 original size:55 final size:56
Alignment explanation
Indices: 19043706--19043826 Score: 163
Period size: 55 Copynumber: 2.2 Consensus size: 56
19043696 ATTGCCGTAA
* ** * * *
19043706 ATGTGGAAGTCCGTTAGGATTATCTCATATGTGGAAGTTCATCAAGACTATCTTAT
1 ATGTGGAAGTACGTTAGGAACATCTCATATGGGGAAGTCCATCAAGACTAACTTAT
* *
19043762 ATGTGGAAGTATGTTAGGAACATCTTA-ATGGGGAAGTCCATCAAGACTAACTTAT
1 ATGTGGAAGTACGTTAGGAACATCTCATATGGGGAAGTCCATCAAGACTAACTTAT
19043817 ATGTGGAAGT
1 ATGTGGAAGT
19043827 CTATCAGGAC
Statistics
Matches: 57, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
55 35 0.61
56 22 0.39
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.32
Consensus pattern (56 bp):
ATGTGGAAGTACGTTAGGAACATCTCATATGGGGAAGTCCATCAAGACTAACTTAT
Found at i:19051199 original size:22 final size:22
Alignment explanation
Indices: 19051174--19051217 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
19051164 ACATAAAAGA
19051174 AATCATAATTTTGCTGAATAAT
1 AATCATAATTTTGCTGAATAAT
19051196 AATCATAATTTTGCTGAATAAT
1 AATCATAATTTTGCTGAATAAT
19051218 TTTAATGTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (22 bp):
AATCATAATTTTGCTGAATAAT
Found at i:19058278 original size:40 final size:38
Alignment explanation
Indices: 19058171--19058287 Score: 107
Period size: 40 Copynumber: 3.0 Consensus size: 38
19058161 GAGTTTAGTG
19058171 ATTT-CTTCGAATTCGAGTCGATGAGGCACTGGGTGCC-A
1 ATTTACTTCGAATT--AGTCGATGAGGCACTGGGTGCCAA
** *
19058209 ATTTACTTCGGTTTAGTCTATG-GGACACTGGGTGCCAA
1 ATTTACTTCGAATTAGTCGATGAGG-CACTGGGTGCCAA
* *
19058247 ATTATTACTTTGAATTA-TCCGATGAGGCACTGGGTGACAA
1 A-T-TTACTTCGAATTAGT-CGATGAGGCACTGGGTGCCAA
19058287 A
1 A
19058288 CTGGTGTGTT
Statistics
Matches: 64, Mismatches: 8, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
36 2 0.03
37 18 0.28
38 6 0.09
39 9 0.14
40 27 0.42
41 2 0.03
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.32
Consensus pattern (38 bp):
ATTTACTTCGAATTAGTCGATGAGGCACTGGGTGCCAA
Found at i:19067389 original size:18 final size:18
Alignment explanation
Indices: 19067366--19067410 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
19067356 GTAAATGGAT
19067366 GAAATTGAGATCAATTTC
1 GAAATTGAGATCAATTTC
*
19067384 GAAATTGAGATCGATTTC
1 GAAATTGAGATCAATTTC
*
19067402 AAAATTGAG
1 GAAATTGAG
19067411 GCTCAGATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.40, C:0.09, G:0.20, T:0.31
Consensus pattern (18 bp):
GAAATTGAGATCAATTTC
Found at i:19079257 original size:196 final size:196
Alignment explanation
Indices: 19078923--19079316 Score: 689
Period size: 196 Copynumber: 2.0 Consensus size: 196
19078913 CATCTTAGAT
*
19078923 AGTTCATTGGTAAGTCCGGTACAGTGTGTACCAAAGAAGGGTGGAATTATGATTATGGAGATGAA
1 AGTTCATTGGTAAGTCCGGTACAGTGTGAACCAAAGAAGGGTGGAATTATGATTATGGAGATGAA
19078988 CATAACGAGTTAATCTCAATGAGGTCGGTCACGGGTTGGAGAATTTGTATAGAATACAGAAAATT
66 CATAACGAGTTAATCTCAATGAGGTCGGTCACGGGTTGGAGAATTTGTATAGAATACAGAAAATT
* * *
19079053 GAACAATGCCACTCGAATGGATCATTTTCTGCTGCCTTTTATGGATTAGATGTTGGATCGACTAG
131 GAACAATGCCACTCGAATGGATCATTTTCTGCTACCTTTTATGGATCAGATGTTGGACCGACTAG
19079118 C
196 C
* *
19079119 AGTTCATTGGTAAGTCCGGTACAGTGTGAACCAAAGAAGGGTGGAATTATGATTGTGGTGATGAA
1 AGTTCATTGGTAAGTCCGGTACAGTGTGAACCAAAGAAGGGTGGAATTATGATTATGGAGATGAA
* * * *
19079184 CATAATGAGTTAATCTCAATGAGGTCGGTCATGGGTTGGAGAATTTGTATTGACTACAGAAAATT
66 CATAACGAGTTAATCTCAATGAGGTCGGTCACGGGTTGGAGAATTTGTATAGAATACAGAAAATT
*
19079249 GAACAATGCCACTCGAATGGATCATTTTCTGCTACCTTTTATGGATCAGATGTTGGACCGACTGG
131 GAACAATGCCACTCGAATGGATCATTTTCTGCTACCTTTTATGGATCAGATGTTGGACCGACTAG
19079314 C
196 C
19079315 AG
1 AG
19079317 GTAAAAAATA
Statistics
Matches: 187, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
196 187 1.00
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (196 bp):
AGTTCATTGGTAAGTCCGGTACAGTGTGAACCAAAGAAGGGTGGAATTATGATTATGGAGATGAA
CATAACGAGTTAATCTCAATGAGGTCGGTCACGGGTTGGAGAATTTGTATAGAATACAGAAAATT
GAACAATGCCACTCGAATGGATCATTTTCTGCTACCTTTTATGGATCAGATGTTGGACCGACTAG
C
Found at i:19083023 original size:13 final size:12
Alignment explanation
Indices: 19083005--19083038 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
19082995 AAGTTAAAGG
19083005 TTAATAAAGTAAA
1 TTAATAAA-TAAA
19083018 TTAATAAATAAA
1 TTAATAAATAAA
19083030 TTAAGTAAA
1 TTAA-TAAA
19083039 AATAAGGCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 8 0.40
13 12 0.60
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (12 bp):
TTAATAAATAAA
Found at i:19087179 original size:158 final size:158
Alignment explanation
Indices: 19086887--19087205 Score: 557
Period size: 158 Copynumber: 2.0 Consensus size: 158
19086877 AGCACATTTT
19086887 CTTTGGATCGTTTAAGCCTTTCAAGCCTACCATATGAATTTAACCCTTGAAACCTTAGTTTGACC
1 CTTTGGATCGTTTAAGCCTTTCAAGCCTACCATATGAATTTAACCCTTGAAACCTTAGTTTGACC
* * *
19086952 CATATAGCCTATTTTATTGCTATTTACCTACATCATAAGCCATATTGTCATCTTTCTAAAATTTT
66 CATATAGCCTATTCTATTGCTATTTACCTACATCATAAGCCATATGGTCATCTTTCTAAAATTTA
19087017 ACCCTATCTTGCACTAATCTTAACTATA
131 ACCCTATCTTGCACTAATCTTAACTATA
* * *
19087045 CTTTGGATCGTTTGAGCCTTTCAAGCCTACCATATGACTTTAACCCTTGAAACCTTAGTTTGAGC
1 CTTTGGATCGTTTAAGCCTTTCAAGCCTACCATATGAATTTAACCCTTGAAACCTTAGTTTGACC
* * *
19087110 CATATAGCTTATTCTATTTCTATTTACCTACATCATAAGCCATATGGTCATCTTTTTAAAATTTA
66 CATATAGCCTATTCTATTGCTATTTACCTACATCATAAGCCATATGGTCATCTTTCTAAAATTTA
19087175 ACCCTATCTTGCACTAATCTTAACTATA
131 ACCCTATCTTGCACTAATCTTAACTATA
19087203 CTT
1 CTT
19087206 GTATTGGTGA
Statistics
Matches: 152, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
158 152 1.00
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.39
Consensus pattern (158 bp):
CTTTGGATCGTTTAAGCCTTTCAAGCCTACCATATGAATTTAACCCTTGAAACCTTAGTTTGACC
CATATAGCCTATTCTATTGCTATTTACCTACATCATAAGCCATATGGTCATCTTTCTAAAATTTA
ACCCTATCTTGCACTAATCTTAACTATA
Found at i:19089424 original size:32 final size:32
Alignment explanation
Indices: 19089387--19089452 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
19089377 AAATTCTTCT
*
19089387 GATTTCTTGGTGAAAATGGTGAATTTTTGGTG
1 GATTTCTAGGTGAAAATGGTGAATTTTTGGTG
19089419 GATTTCTAGGTGAAAATGGTGAATTTTTGGTG
1 GATTTCTAGGTGAAAATGGTGAATTTTTGGTG
19089451 GA
1 GA
19089453 AGGACCAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.24, C:0.03, G:0.32, T:0.41
Consensus pattern (32 bp):
GATTTCTAGGTGAAAATGGTGAATTTTTGGTG
Found at i:19090102 original size:23 final size:23
Alignment explanation
Indices: 19090076--19090126 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
19090066 ACCTACTTTC
* *
19090076 TTACAGTAGTAATTTTTGGGGTA
1 TTACAGTAGTAATTTTCGGGATA
19090099 TTACAGTAGTAATTTTCGGGATA
1 TTACAGTAGTAATTTTCGGGATA
19090122 TTACA
1 TTACA
19090127 ATCCTAATGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (23 bp):
TTACAGTAGTAATTTTCGGGATA
Found at i:19090134 original size:23 final size:23
Alignment explanation
Indices: 19090076--19090134 Score: 55
Period size: 23 Copynumber: 2.6 Consensus size: 23
19090066 ACCTACTTTC
* * * *
19090076 TTACAGTAGTAATTTTTGGGGTA
1 TTACAATACTAATTTTCGGGATA
* *
19090099 TTACAGTAGTAATTTTCGGGATA
1 TTACAATACTAATTTTCGGGATA
*
19090122 TTACAATCCTAAT
1 TTACAATACTAAT
19090135 GAAATGGCGA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.41
Consensus pattern (23 bp):
TTACAATACTAATTTTCGGGATA
Found at i:19105269 original size:13 final size:13
Alignment explanation
Indices: 19105251--19105275 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
19105241 ACACTATTTC
19105251 CTTTATTCATTAG
1 CTTTATTCATTAG
19105264 CTTTATTCATTA
1 CTTTATTCATTA
19105276 TCAATTGTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.04, T:0.56
Consensus pattern (13 bp):
CTTTATTCATTAG
Found at i:19106565 original size:50 final size:50
Alignment explanation
Indices: 19106441--19106682 Score: 222
Period size: 50 Copynumber: 4.7 Consensus size: 50
19106431 AATAATAACA
* * *
19106441 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTT-TCGTGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-CGG
* *
19106490 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
* *** ** *
19106540 TGCCCATGCCATGTCCCAGACATGGTCTTATGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
* * *
19106590 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTT-TCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCAT-A--TC---GG
* *
19106646 TGCCAATTCCATGTCCGAGACATGGTCTTACATGGGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
19106683 TCTCTTTACC
Statistics
Matches: 158, Mismatches: 25, Indels: 13
0.81 0.13 0.07
Matches are distributed among these distances:
48 4 0.03
49 38 0.24
50 77 0.49
51 2 0.01
53 2 0.01
56 35 0.22
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
Found at i:19117927 original size:43 final size:43
Alignment explanation
Indices: 19117879--19118002 Score: 128
Period size: 43 Copynumber: 2.9 Consensus size: 43
19117869 AGCCCGTACA
* * *
19117879 ATGCCAACGTCCCAGACGTGGTCTTACATGTGATCAC-AGATCG
1 ATGCCAACGTCCCAGAAGTGGTCTTACATGTAAACACAAG-TCG
* * *
19117922 ATGCC-ACTGTCCCAGAAAG-GGTCTTACAGGTAAACATAAGTTG
1 ATGCCAAC-GTCCCAG-AAGTGGTCTTACATGTAAACACAAGTCG
* *
19117965 ATGCCAACTTCCCAGAAGTGGTCTTACATGAAAACACA
1 ATGCCAACGTCCCAGAAGTGGTCTTACATGTAAACACA
19118003 TATCGAAAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 10
0.77 0.12 0.12
Matches are distributed among these distances:
42 5 0.08
43 55 0.83
44 6 0.09
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGAAGTGGTCTTACATGTAAACACAAGTCG
Found at i:19120718 original size:151 final size:151
Alignment explanation
Indices: 19120528--19120825 Score: 560
Period size: 151 Copynumber: 2.0 Consensus size: 151
19120518 GTACTACCCA
* *
19120528 GATAAATAGATAATCGACTATTATGAGCTTCATTCAATATCATCTGAATTAACTCTAAATTTTTT
1 GATAAATAGATAATCGACTATTATGAGCTTCATTCAATATCATCTGAACTAACTCTAAATTTTTC
* *
19120593 GAAACACATAATCGGTTTCTGAATCTCAAAAATCCTCAGCATCAACTAGAAGCTCTGAATCAACA
66 AAAACACATAATCAGTTTCTGAATCTCAAAAATCCTCAGCATCAACTAGAAGCTCTGAATCAACA
19120658 TTCAAGTCACACTAAGCCCCG
131 TTCAAGTCACACTAAGCCCCG
19120679 GATAAATAGATAATCGACTATTATGAGCTTCATTCAATATCATCTGAACTAACTCTAAATTTTTC
1 GATAAATAGATAATCGACTATTATGAGCTTCATTCAATATCATCTGAACTAACTCTAAATTTTTC
19120744 AAAACACATAATCAGTTTCTGAATCTCAAAAATCCTCAGCATCAACTAGAAGCTCTGAATCAACA
66 AAAACACATAATCAGTTTCTGAATCTCAAAAATCCTCAGCATCAACTAGAAGCTCTGAATCAACA
19120809 TTCAAGTCACACTAAGC
131 TTCAAGTCACACTAAGC
19120826 TCATTTTGCA
Statistics
Matches: 143, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
151 143 1.00
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.30
Consensus pattern (151 bp):
GATAAATAGATAATCGACTATTATGAGCTTCATTCAATATCATCTGAACTAACTCTAAATTTTTC
AAAACACATAATCAGTTTCTGAATCTCAAAAATCCTCAGCATCAACTAGAAGCTCTGAATCAACA
TTCAAGTCACACTAAGCCCCG
Done.