Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43060996
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2186021 characters in sequence are not A, C, G, or T
File 67 of 128
Found at i:21600967 original size:8 final size:8
Alignment explanation
Indices: 21600950--21601090 Score: 87
Period size: 8 Copynumber: 17.6 Consensus size: 8
21600940 GCAATTTCAA
*
21600950 CTCTCTCT
1 CTCTCCCT
21600958 CTCTCCCT
1 CTCTCCCT
*
21600966 CTTTCCCCCT
1 C--TCTCCCT
21600976 CTCTCCCT
1 CTCTCCCT
21600984 C-CTTCCC-
1 CTC-TCCCT
21600991 C-CTCCCT
1 CTCTCCCT
*
21600998 CTTCCCCCCT
1 C-T-CTCCCT
*
21601008 CTCTCCTT
1 CTCTCCCT
*
21601016 CCCTCCCT
1 CTCTCCCT
21601024 CTCTCTCCT
1 CTCTC-CCT
*
21601033 -TCTCTC-
1 CTCTCCCT
21601039 CT-TCCCT
1 CTCTCCCT
*
21601046 CCCTCCCT
1 CTCTCCCT
*
21601054 CTCTCTCT
1 CTCTCCCT
*
21601062 CTCTCTCT
1 CTCTCCCT
*
21601070 CTCTCTCT
1 CTCTCCCT
*
21601078 CTCTCTCT
1 CTCTCCCT
21601086 CTCTC
1 CTCTC
21601091 TCTGTGTCTT
Statistics
Matches: 108, Mismatches: 14, Indels: 22
0.75 0.10 0.15
Matches are distributed among these distances:
6 7 0.06
7 7 0.06
8 77 0.71
9 4 0.04
10 13 0.12
ACGTcount: A:0.00, C:0.60, G:0.00, T:0.40
Consensus pattern (8 bp):
CTCTCCCT
Found at i:21600979 original size:18 final size:18
Alignment explanation
Indices: 21600956--21601055 Score: 73
Period size: 18 Copynumber: 5.7 Consensus size: 18
21600946 TCAACTCTCT
21600956 CTCTCTCCCTCTTTCCCC
1 CTCTCTCCCTCTTTCCCC
*
21600974 CTCTCTCCCTCCTT--CC
1 CTCTCTCCCTCTTTCCCC
*
21600990 C-C-CTCCCTCTTCCCCC
1 CTCTCTCCCTCTTTCCCC
* ** *
21601006 CTCTCTCCTTCCCTCCCT
1 CTCTCTCCCTCTTTCCCC
* *
21601024 CTCTCTCCTTCTCTCCTTCC
1 CTCTCTCCCTCTTTCC--CC
*
21601044 CTCCCTCCCTCT
1 CTCTCTCCCTCT
21601056 CTCTCTCTCT
Statistics
Matches: 64, Mismatches: 12, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
14 8 0.12
15 1 0.02
16 6 0.09
17 1 0.02
18 37 0.58
20 11 0.17
ACGTcount: A:0.00, C:0.63, G:0.00, T:0.37
Consensus pattern (18 bp):
CTCTCTCCCTCTTTCCCC
Found at i:21600990 original size:26 final size:26
Alignment explanation
Indices: 21600960--21601050 Score: 92
Period size: 26 Copynumber: 3.3 Consensus size: 26
21600950 CTCTCTCTCT
21600960 CTCCCTCTTTCCCCCTCTCTCCCTCCTTCCCC
1 CTCCCTCTTT-CCCC-CTCT--CTCCTT--CC
*
21600992 CTCCCTCTTCCCCCCTCTCTCCTTCC
1 CTCCCTCTTTCCCCCTCTCTCCTTCC
* * *
21601018 CTCCCTCTCTCTCCTTCTCTCCTTCC
1 CTCCCTCTTTCCCCCTCTCTCCTTCC
21601044 CTCCCTC
1 CTCCCTC
21601051 CCTCTCTCTC
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
26 31 0.57
28 6 0.11
30 4 0.07
31 4 0.07
32 9 0.17
ACGTcount: A:0.00, C:0.64, G:0.00, T:0.36
Consensus pattern (26 bp):
CTCCCTCTTTCCCCCTCTCTCCTTCC
Found at i:21600999 original size:32 final size:32
Alignment explanation
Indices: 21600960--21601054 Score: 100
Period size: 32 Copynumber: 2.9 Consensus size: 32
21600950 CTCTCTCTCT
* *
21600960 CTCCCTCTTTCCCCCTCTCTCCCTCCTTCCCC
1 CTCCCTCTTCCCCCCTCTCTCCCTCCCTCCCC
* *
21600992 CTCCCTCTTCCCCCCTCTCTCCTTCCCTCCCT
1 CTCCCTCTTCCCCCCTCTCTCCCTCCCTCCCC
* * * *
21601024 CTCTCTCCTTCTCTCCTTCCCTCCCTCCCTC
1 CTCCCT-CTTC-CCCCCTCTCTCCCTCCCTC
21601055 TCTCTCTCTC
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
32 33 0.63
33 4 0.08
34 15 0.29
ACGTcount: A:0.00, C:0.64, G:0.00, T:0.36
Consensus pattern (32 bp):
CTCCCTCTTCCCCCCTCTCTCCCTCCCTCCCC
Found at i:21601003 original size:13 final size:14
Alignment explanation
Indices: 21600978--21601018 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
21600968 TTCCCCCTCT
21600978 CTCCCTCCTTCCCC
1 CTCCCTCCTTCCCC
21600992 CTCCCT-CTTCCCCC
1 CTCCCTCCTT-CCCC
*
21601006 CTCTCTCCTTCCC
1 CTCCCTCCTTCCC
21601019 TCCCTCTCTC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 3 0.12
14 18 0.75
15 3 0.12
ACGTcount: A:0.00, C:0.68, G:0.00, T:0.32
Consensus pattern (14 bp):
CTCCCTCCTTCCCC
Found at i:21601027 original size:2 final size:2
Alignment explanation
Indices: 21601022--21601093 Score: 89
Period size: 2 Copynumber: 38.0 Consensus size: 2
21601012 CCTTCCCTCC
* * *
21601022 CT CT CT CT C- CT -T CT CT C- CT -T CC CT CC CT CC CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
21601060 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
21601094 GTGTCTTAAT
Statistics
Matches: 60, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
1 4 0.07
2 56 0.93
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (2 bp):
CT
Found at i:21601055 original size:26 final size:28
Alignment explanation
Indices: 21601006--21601093 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 28
21600996 CTCTTCCCCC
*
21601006 CTCTCTCCTTCCCTCCCTCTCTCTC-CT
1 CTCTCTCCTTCCCTCCCTCCCTCTCTCT
21601033 -TCTCTCCTTCCCTCCCTCCCTCTCTCT
1 CTCTCTCCTTCCCTCCCTCCCTCTCTCT
* * *
21601060 CTCTCT-CTCTCTCTCTCTCTCTCTCTCT
1 CTCTCTCCT-TCCCTCCCTCCCTCTCTCT
21601088 CTCTCT
1 CTCTCT
21601094 GTGTCTTAAT
Statistics
Matches: 54, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
26 23 0.43
27 4 0.07
28 27 0.50
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (28 bp):
CTCTCTCCTTCCCTCCCTCCCTCTCTCT
Found at i:21609048 original size:22 final size:22
Alignment explanation
Indices: 21609023--21609066 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
21609013 ATAAAGTAAA
21609023 AGAAAAAGCATGAAAACAAAAT
1 AGAAAAAGCATGAAAACAAAAT
21609045 AGAAAAAGCATGAAAACAAAAT
1 AGAAAAAGCATGAAAACAAAAT
21609067 TTCCTATGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.68, C:0.09, G:0.14, T:0.09
Consensus pattern (22 bp):
AGAAAAAGCATGAAAACAAAAT
Found at i:21614632 original size:24 final size:25
Alignment explanation
Indices: 21614600--21614647 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
21614590 CTAATCATTC
21614600 AATTAACTA-AA-ATTATCATTTCAA
1 AATTAACTATAATATTAT-ATTTCAA
*
21614624 AATTTACTATAATATTATATTTCA
1 AATTAACTATAATATTATATTTCA
21614648 CTCGTAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 8 0.38
25 8 0.38
26 5 0.24
ACGTcount: A:0.46, C:0.10, G:0.00, T:0.44
Consensus pattern (25 bp):
AATTAACTATAATATTATATTTCAA
Found at i:21614893 original size:20 final size:20
Alignment explanation
Indices: 21614868--21614905 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
21614858 ACGGAATTTC
*
21614868 ATTTCTCTATTTATCCATCT
1 ATTTCTCCATTTATCCATCT
*
21614888 ATTTCTCCATTTTTCCAT
1 ATTTCTCCATTTATCCAT
21614906 TTGTAACATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.26, G:0.00, T:0.55
Consensus pattern (20 bp):
ATTTCTCCATTTATCCATCT
Found at i:21619045 original size:21 final size:20
Alignment explanation
Indices: 21619005--21619045 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
21618995 ATTCAAATAT
*
21619005 GTTTAAGATTTAACTGTTTA
1 GTTTAAGATTTAAATGTTTA
21619025 GTTTAAGATTTATAATGTTTA
1 GTTTAAGATTTA-AATGTTTA
21619046 AATTAGTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.32, C:0.02, G:0.15, T:0.51
Consensus pattern (20 bp):
GTTTAAGATTTAAATGTTTA
Found at i:21622285 original size:19 final size:20
Alignment explanation
Indices: 21622242--21622286 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
21622232 AGGGCTGAGA
*
21622242 GGTTTTTTTTTTGAAAGATT
1 GGTTTTTTTTTTGAAAGATG
* *
21622262 TGTTTTTTTTTTTAAA-ATG
1 GGTTTTTTTTTTGAAAGATG
21622281 GGTTTT
1 GGTTTT
21622287 GAAATGAAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.18, C:0.00, G:0.18, T:0.64
Consensus pattern (20 bp):
GGTTTTTTTTTTGAAAGATG
Found at i:21623340 original size:98 final size:98
Alignment explanation
Indices: 21623207--21623403 Score: 331
Period size: 98 Copynumber: 2.0 Consensus size: 98
21623197 AAAAAAGTCA
* *
21623207 TAAAGAAAATATTCCGAGTTTGGAATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGAAAATATTCCGAGTTTGGAATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
* *
21623272 TTAAATCTTGGATAAGTGGATGTTGTTTTAAAG
66 TTAAATCTTGGATAAGTGGATATTCTTTTAAAG
* * *
21623305 TAAAGGAAATATTCCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGAAAATATTCCGAGTTTGGAATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
21623370 TTAAATCTTGGATAAGTGGATATTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATATTCTTTTAAAG
21623403 T
1 T
21623404 TTTATTTTAC
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
98 92 1.00
ACGTcount: A:0.29, C:0.10, G:0.24, T:0.37
Consensus pattern (98 bp):
TAAAGAAAATATTCCGAGTTTGGAATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATATTCTTTTAAAG
Found at i:21624824 original size:15 final size:15
Alignment explanation
Indices: 21624804--21624833 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
21624794 GGATAGAGTT
21624804 TACTCGAGAGCGGTA
1 TACTCGAGAGCGGTA
21624819 TACTCGAGAGCGGTA
1 TACTCGAGAGCGGTA
21624834 AATGTGCCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.20, G:0.33, T:0.20
Consensus pattern (15 bp):
TACTCGAGAGCGGTA
Found at i:21629849 original size:12 final size:12
Alignment explanation
Indices: 21629834--21629858 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
21629824 GGTTGAGAAA
21629834 AGCATCGAGGAG
1 AGCATCGAGGAG
21629846 AGCATCGAGGAG
1 AGCATCGAGGAG
21629858 A
1 A
21629859 CGTTGGGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.16, G:0.40, T:0.08
Consensus pattern (12 bp):
AGCATCGAGGAG
Found at i:21633701 original size:14 final size:14
Alignment explanation
Indices: 21633679--21633708 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
21633669 TGATGGAGTC
21633679 AACAACATTGGATG
1 AACAACATTGGATG
*
21633693 AACAGCATTGGATG
1 AACAACATTGGATG
21633707 AA
1 AA
21633709 AGAATGGCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.13, G:0.23, T:0.20
Consensus pattern (14 bp):
AACAACATTGGATG
Found at i:21651779 original size:3 final size:3
Alignment explanation
Indices: 21651771--21651805 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
21651761 TGCCGAAAAC
21651771 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
21651806 GTGTAGTAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:21652574 original size:32 final size:31
Alignment explanation
Indices: 21652533--21652630 Score: 133
Period size: 32 Copynumber: 3.1 Consensus size: 31
21652523 GGGATTTTAA
*
21652533 AAAATAAATTAGGTTTTAGGGTTTTTTAAAAT
1 AAAATAAATTAGG-TTTAAGGTTTTTTAAAAT
*
21652565 AAAATAAATTAAGGTTTAAGATTTTTTAAAAT
1 AAAATAAATT-AGGTTTAAGGTTTTTTAAAAT
* *
21652597 AAATTAAATTAGGGTTTAAGGTTTTTAAAAAT
1 AAAATAAATTA-GGTTTAAGGTTTTTTAAAAT
21652629 AA
1 AA
21652631 TTTTGTATTT
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
31 1 0.02
32 55 0.93
33 3 0.05
ACGTcount: A:0.46, C:0.00, G:0.13, T:0.41
Consensus pattern (31 bp):
AAAATAAATTAGGTTTAAGGTTTTTTAAAAT
Found at i:21656461 original size:16 final size:16
Alignment explanation
Indices: 21656437--21656467 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
21656427 AATATTTGAT
21656437 AATGACTAGCTATTGG
1 AATGACTAGCTATTGG
*
21656453 AATGGCTAGCTATTG
1 AATGACTAGCTATTG
21656468 ACATGCTTGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.32
Consensus pattern (16 bp):
AATGACTAGCTATTGG
Found at i:21679414 original size:14 final size:14
Alignment explanation
Indices: 21679395--21679425 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
21679385 AACCTAAATG
21679395 AAAAATGAAAAGAA
1 AAAAATGAAAAGAA
21679409 AAAAATGAAAAGAA
1 AAAAATGAAAAGAA
21679423 AAA
1 AAA
21679426 CCCTAATCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.13, T:0.06
Consensus pattern (14 bp):
AAAAATGAAAAGAA
Found at i:21679423 original size:26 final size:26
Alignment explanation
Indices: 21679370--21679425 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
21679360 AATCTACTTT
** *
21679370 AAAATGAAAAGACAAAACCTAAATGA
1 AAAATGAAAAGACAAAAAATAAAAGA
21679396 AAAATGAAAAGA-AAAAAATGAAAAGA
1 AAAATGAAAAGACAAAAAAT-AAAAGA
21679422 AAAA
1 AAAA
21679426 CCCTAATCCT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 5 0.19
26 21 0.81
ACGTcount: A:0.73, C:0.05, G:0.12, T:0.09
Consensus pattern (26 bp):
AAAATGAAAAGACAAAAAATAAAAGA
Found at i:21685984 original size:21 final size:21
Alignment explanation
Indices: 21685943--21685985 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
21685933 TGAAGAGCTT
*
21685943 ATTAAAGCTAAAATAACAAAA
1 ATTAAAGCGAAAATAACAAAA
*
21685964 ATTAAA-CGAAAATTACTAAAA
1 ATTAAAGCGAAAATAAC-AAAA
21685985 A
1 A
21685986 GACATGAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.65, C:0.09, G:0.05, T:0.21
Consensus pattern (21 bp):
ATTAAAGCGAAAATAACAAAA
Found at i:21686282 original size:24 final size:25
Alignment explanation
Indices: 21686241--21686287 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
21686231 CTCAGCTTTT
21686241 AACCCAATACTTTATATT-TATTCC
1 AACCCAATACTTTATATTCTATTCC
*
21686265 AACCCAATA-TTTGTTATTCTATT
1 AACCCAATACTTT-ATATTCTATT
21686288 TCCCAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 3 0.15
24 13 0.65
25 4 0.20
ACGTcount: A:0.32, C:0.21, G:0.02, T:0.45
Consensus pattern (25 bp):
AACCCAATACTTTATATTCTATTCC
Found at i:21686602 original size:57 final size:56
Alignment explanation
Indices: 21686499--21686608 Score: 157
Period size: 57 Copynumber: 1.9 Consensus size: 56
21686489 TTTAGGTCTT
* *
21686499 TTTCATTTTACATTTTCATTTTCATTTTGGAGAAAACCACATTCATTTCCAAATGA
1 TTTCATTTTACATTTTCATTTTCATTTTGGAGAAAAACACAGTCATTTCCAAATGA
* * **
21686555 TTTCATTTCTCCATTTTCATTTTCATTTTGGATAAAAACTTAGTCATTTCCAAA
1 TTTCATTT-TACATTTTCATTTTCATTTTGGAGAAAAACACAGTCATTTCCAAA
21686609 AGTTTGCTAT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
56 8 0.17
57 39 0.83
ACGTcount: A:0.29, C:0.18, G:0.06, T:0.46
Consensus pattern (56 bp):
TTTCATTTTACATTTTCATTTTCATTTTGGAGAAAAACACAGTCATTTCCAAATGA
Found at i:21686630 original size:57 final size:57
Alignment explanation
Indices: 21686499--21686628 Score: 156
Period size: 57 Copynumber: 2.3 Consensus size: 57
21686489 TTTAGGTCTT
* * * *
21686499 TTTCATTT-TACATTTTCATTTTCATTTTGGAGAAAACCACATTCATTTCCAAATGA
1 TTTCATTTCTCCATTTTCATTTTCATTTTGGAGAAAAACACAGTCATTTCCAAAAGA
* **
21686555 TTTCATTTCTCCATTTTCATTTTCATTTTGGATAAAAACTTAGTCATTTCCAAAAG-
1 TTTCATTTCTCCATTTTCATTTTCATTTTGGAGAAAAACACAGTCATTTCCAAAAGA
*
21686611 TTTGCTATTTTTCCATTT
1 TTT-C-ATTTCTCCATTT
21686629 CACCATTTCT
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
56 11 0.17
57 41 0.65
58 11 0.17
ACGTcount: A:0.27, C:0.18, G:0.07, T:0.48
Consensus pattern (57 bp):
TTTCATTTCTCCATTTTCATTTTCATTTTGGAGAAAAACACAGTCATTTCCAAAAGA
Found at i:21691278 original size:21 final size:21
Alignment explanation
Indices: 21691254--21691306 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
21691244 CTTTTTCAGT
*
21691254 AACTTCTTCTTCTTCAGCAAC
1 AACTTCTTCTTCTGCAGCAAC
21691275 AACTT-TCTCTTCTGCAGCAAC
1 AACTTCT-TCTTCTGCAGCAAC
21691296 AACTTCCTTCT
1 AACTT-CTTCT
21691307 CAACAACAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 1 0.04
21 23 0.82
22 3 0.11
23 1 0.04
ACGTcount: A:0.23, C:0.34, G:0.06, T:0.38
Consensus pattern (21 bp):
AACTTCTTCTTCTGCAGCAAC
Found at i:21691313 original size:18 final size:21
Alignment explanation
Indices: 21691261--21691314 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
21691251 AGTAACTTCT
* *
21691261 TCTTCTTCAGCAACAACTTTC
1 TCTTCTGCAACAACAACTTTC
*
21691282 TCTTCTGCAGCAACAAC-TTC
1 TCTTCTGCAACAACAACTTTC
21691302 -CTTCT-CAACAACA
1 TCTTCTGCAACAACA
21691315 GTGTCCTCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
18 7 0.23
19 5 0.16
20 3 0.10
21 16 0.52
ACGTcount: A:0.28, C:0.35, G:0.06, T:0.31
Consensus pattern (21 bp):
TCTTCTGCAACAACAACTTTC
Found at i:21697999 original size:133 final size:133
Alignment explanation
Indices: 21697761--21698023 Score: 517
Period size: 133 Copynumber: 2.0 Consensus size: 133
21697751 GTGTACACTG
21697761 TCGATGCAAGTATAGTAGATAGATGTGAGTTTGTCGGATATCGATCCTGCAAGGATGGTAGTCTT
1 TCGATGCAAGTATAGTAGATAGATGTGAGTTTGTCGGATATCGATCCTGCAAGGATGGTAGTCTT
21697826 TTGTCTATTAATTTCGATTAAACAACTATATAGAAACAAGATAAATTATGAGAACCGTTGTCGAT
66 TTGTCTATTAATTTCGATTAAACAACTATATAGAAACAAGATAAATTATGAGAACCGTTGTCGAT
21697891 CTA
131 CTA
*
21697894 TCGATGCAAGTATAGTAGATAGATGTGAGTTTGTCGGATATCGATCCTGCAAGGATGGTAGTGTT
1 TCGATGCAAGTATAGTAGATAGATGTGAGTTTGTCGGATATCGATCCTGCAAGGATGGTAGTCTT
21697959 TTGTCTATTAATTTCGATTAAACAACTATATAGAAACAAGATAAATTATGAGAACCGTTGTCGAT
66 TTGTCTATTAATTTCGATTAAACAACTATATAGAAACAAGATAAATTATGAGAACCGTTGTCGAT
21698024 GCAATAACTT
Statistics
Matches: 129, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
133 129 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (133 bp):
TCGATGCAAGTATAGTAGATAGATGTGAGTTTGTCGGATATCGATCCTGCAAGGATGGTAGTCTT
TTGTCTATTAATTTCGATTAAACAACTATATAGAAACAAGATAAATTATGAGAACCGTTGTCGAT
CTA
Found at i:21703472 original size:21 final size:21
Alignment explanation
Indices: 21703446--21703488 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
21703436 CTCAACGGGA
21703446 TAGCTGATATGGCCAGTTAAC
1 TAGCTGATATGGCCAGTTAAC
*
21703467 TAGCTGATGTGGCCAGTTAAC
1 TAGCTGATATGGCCAGTTAAC
21703488 T
1 T
21703489 TGCCACTTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (21 bp):
TAGCTGATATGGCCAGTTAAC
Found at i:21707018 original size:29 final size:29
Alignment explanation
Indices: 21706976--21707200 Score: 138
Period size: 29 Copynumber: 7.8 Consensus size: 29
21706966 GATCATCGAT
* * *
21706976 TATGTAAAGGGATAGCTTCGGCTATCAAA
1 TATGAAAAGGGATAGATTCGACTATCAAA
* *
21707005 TATGAAAATGGATAGATTCGACTATCAAT
1 TATGAAAAGGGATAGATTCGACTATCAAA
* *
21707034 TATGAAAAGGGATAG-TGACGACCATCAACA
1 TATGAAAAGGGATAGAT-TCGACTATCAA-A
* * *
21707064 -ATGAAAAGGGAT-GGTGACGACCATCAAA
1 TATGAAAAGGGATAGAT-TCGACTATCAAA
* * * * * *
21707092 TACGAAAAGAGATAGCTTCGGCTATCGAT
1 TATGAAAAGGGATAGATTCGACTATCAAA
* * *
21707121 TATGAAAAGGGAT-G-TGACGACCATCAAT
1 TATGAAAAGGGATAGAT-TCGACTATCAAA
* * * * *
21707149 TAATGAAAAGTGATGGTTTCGACCATCGAA
1 T-ATGAAAAGGGATAGATTCGACTATCAAA
21707179 TATGAAAAGGGAT-GATTACGAC
1 TATGAAAAGGGATAGATT-CGAC
21707201 CATTGTTTAG
Statistics
Matches: 157, Mismatches: 29, Indels: 20
0.76 0.14 0.10
Matches are distributed among these distances:
27 1 0.01
28 16 0.10
29 126 0.80
30 13 0.08
31 1 0.01
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.23
Consensus pattern (29 bp):
TATGAAAAGGGATAGATTCGACTATCAAA
Found at i:21707090 original size:58 final size:56
Alignment explanation
Indices: 21706963--21707203 Score: 180
Period size: 58 Copynumber: 4.2 Consensus size: 56
21706953 ACAGCATATC
* * * * * * * *
21706963 GACGATCATCGATTATGTAAAGGGATAGCTTCGGCTATCAAATATGAAAATGGATAGAT
1 GACGACCATCAATTATGAAAAGAGATAG-TTCGACCATC-AATATGAAAAGGGAT-GGT
* * * * *
21707022 -TCGACTATCAATTATGAAAAGGGATAGTGACGACCATCAACAATGAAAAGGGATGGT
1 GACGACCATCAATTATGAAAAGAGATAGT-TCGACCATCAA-TATGAAAAGGGATGGT
* * * * *
21707079 GACGACCATCAAATACGAAAAGAGATAGCTTCGGCTATCGATTATGAAAAGGGAT-GT
1 GACGACCATCAATTATGAAAAGAGATAG-TTCGACCATC-AATATGAAAAGGGATGGT
* * *
21707136 GACGACCATCAATTAATGAAAAGTGATGGTTTCGACCATCGAATATGAAAAGGGATGAT
1 GACGACCATCAATT-ATGAAAAGAGATAG-TTCGACCATC-AATATGAAAAGGGATGGT
*
21707195 TACGACCAT
1 GACGACCAT
21707204 TGTTTAGCAC
Statistics
Matches: 144, Mismatches: 31, Indels: 14
0.76 0.16 0.07
Matches are distributed among these distances:
57 20 0.14
58 113 0.78
59 11 0.08
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.23
Consensus pattern (56 bp):
GACGACCATCAATTATGAAAAGAGATAGTTCGACCATCAATATGAAAAGGGATGGT
Found at i:21707117 original size:87 final size:86
Alignment explanation
Indices: 21706999--21707188 Score: 265
Period size: 87 Copynumber: 2.2 Consensus size: 86
21706989 AGCTTCGGCT
21706999 ATCAAATATGAAAATGGATAGATTCGACTATCAATTATGAAAAGGGATAGTGACGACCATCAA-C
1 ATCAAATATGAAAA-GGATAGATTCGACTATCAATTATGAAAAGGGAT-GTGACGACCATCAATC
21707063 AATGAAAAGGGATGGTGACGACC
64 AATGAAAAGGGATGGTGACGACC
* * * * *
21707086 ATCAAATACGAAAAGAGATAGCTTCGGCTATCGATTATGAAAAGGGATGTGACGACCATCAATTA
1 ATCAAATATGAAAAG-GATAGATTCGACTATCAATTATGAAAAGGGATGTGACGACCATCAATCA
* **
21707151 ATGAAAAGTGATGGTTTCGACC
65 ATGAAAAGGGATGGTGACGACC
*
21707173 ATCGAATATGAAAAGG
1 ATCAAATATGAAAAGG
21707189 GATGATTACG
Statistics
Matches: 91, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
86 16 0.18
87 75 0.82
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (86 bp):
ATCAAATATGAAAAGGATAGATTCGACTATCAATTATGAAAAGGGATGTGACGACCATCAATCAA
TGAAAAGGGATGGTGACGACC
Found at i:21707201 original size:29 final size:28
Alignment explanation
Indices: 21707003--21707203 Score: 140
Period size: 29 Copynumber: 7.0 Consensus size: 28
21706993 TCGGCTATCA
* *
21707003 AATATGAAAATGGATAGATT-CGACTATC
1 AATATGAAAAGGGAT-GATTACGACCATC
*
21707031 AATTATGAAAAGGGAT-AGTGACGACCATC
1 AA-TATGAAAAGGGATGA-TTACGACCATC
* * *
21707060 AACAATGAAAAGGGATGGTGACGACCATC
1 AA-TATGAAAAGGGATGATTACGACCATC
* * * * *
21707089 AAATACGAAAAGAGATAGCTT-CGGCTATC
1 -AATATGAAAAGGGAT-GATTACGACCATC
* *
21707118 GATTATGAAAAGGGATG-TGACGACCATC
1 -AATATGAAAAGGGATGATTACGACCATC
* * *
21707146 AATTAATGAAAAGTGATGGTTTCGACCATC
1 AA-T-ATGAAAAGGGATGATTACGACCATC
21707176 GAATATGAAAAGGGATGATTACGACCAT
1 -AATATGAAAAGGGATGATTACGACCAT
21707204 TGTTTAGCAC
Statistics
Matches: 135, Mismatches: 27, Indels: 21
0.74 0.15 0.11
Matches are distributed among these distances:
27 3 0.02
28 11 0.08
29 105 0.78
30 14 0.10
31 2 0.01
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.22
Consensus pattern (28 bp):
AATATGAAAAGGGATGATTACGACCATC
Found at i:21709589 original size:30 final size:30
Alignment explanation
Indices: 21709555--21709634 Score: 160
Period size: 30 Copynumber: 2.7 Consensus size: 30
21709545 GTGACAAATA
21709555 TAGGTTAAGTAATGTTTTTGGTTGGCTAAT
1 TAGGTTAAGTAATGTTTTTGGTTGGCTAAT
21709585 TAGGTTAAGTAATGTTTTTGGTTGGCTAAT
1 TAGGTTAAGTAATGTTTTTGGTTGGCTAAT
21709615 TAGGTTAAGTAATGTTTTTG
1 TAGGTTAAGTAATGTTTTTG
21709635 ATGTGATTCA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.24, C:0.03, G:0.26, T:0.47
Consensus pattern (30 bp):
TAGGTTAAGTAATGTTTTTGGTTGGCTAAT
Found at i:21712691 original size:610 final size:610
Alignment explanation
Indices: 21711532--21712756 Score: 2441
Period size: 610 Copynumber: 2.0 Consensus size: 610
21711522 TATCGGCAGT
21711532 GATTTCTTCGATGTTAGCTCAGAAATATGTGAGAAAGGGTTGTGAAGCTTACTTTTCCTATGTAC
1 GATTTCTTCGATGTTAGCTCAGAAATATGTGAGAAAGGGTTGTGAAGCTTACTTTTCCTATGTAC
21711597 TCGATTCTAAAGTGATCAAAAAGAAGATTGAATTAGTACCAGTCGTGTGCGAGTATCCGGATGTG
66 TCGATTCTAAAGTGATCAAAAAGAAGATTGAATTAGTACCAGTCGTGTGCGAGTATCCGGATGTG
21711662 TTTCTTAAAGAATTACCGGGTTTGCCACCAATTCGAAAGGTAGAGTTTGGCATTGAGTTAGTGCC
131 TTTCTTAAAGAATTACCGGGTTTGCCACCAATTCGAAAGGTAGAGTTTGGCATTGAGTTAGTGCC
21711727 GGGGACAACTAGGATTTCGATACCTCCGTACAAAATGGCACTGACTGAATTAAAAGAGTTGAAAG
196 GGGGACAACTAGGATTTCGATACCTCCGTACAAAATGGCACTGACTGAATTAAAAGAGTTGAAAG
21711792 CTCAGTTGCAAGAATTGACAGATAGAGGTTTCGCACGATCGAGTTTTTCTCCCTAGGGTGCACCG
261 CTCAGTTGCAAGAATTGACAGATAGAGGTTTCGCACGATCGAGTTTTTCTCCCTAGGGTGCACCG
21711857 GTTTTGTTTGTGAAAAAGAAAAACGAAACTATGAGAATGTGCATCGATTATCGACAGCCCAATAA
326 GTTTTGTTTGTGAAAAAGAAAAACGAAACTATGAGAATGTGCATCGATTATCGACAGCCCAATAA
21711922 AGTGACCCTAAAGAATAAATATCCTCTGCCACATATTGACGATCTGTTTGATCAGTTGAAAGGGG
391 AGTGACCCTAAAGAATAAATATCCTCTGCCACATATTGACGATCTGTTTGATCAGTTGAAAGGGG
21711987 CTACAGTGTTTTCAATGATAGATATGAGATTGGGTTACTATCAGTTGCGAGTTAAAGACTCCGAT
456 CTACAGTGTTTTCAATGATAGATATGAGATTGGGTTACTATCAGTTGCGAGTTAAAGACTCCGAT
21712052 GTGTAGAAAACTGCTTTCTGAATGAGGTATGGACATTATGAGTTTTTAGTTATGCCTTTTGGACT
521 GTGTAGAAAACTGCTTTCTGAATGAGGTATGGACATTATGAGTTTTTAGTTATGCCTTTTGGACT
21712117 AACAAATGCACCTACTGCTTTTATA
586 AACAAATGCACCTACTGCTTTTATA
21712142 GATTTCTTCGATGTTAGCTCAGAAATATGTGAGAAAGGGTTGTGAAGCTTACTTTTCCTATGTAC
1 GATTTCTTCGATGTTAGCTCAGAAATATGTGAGAAAGGGTTGTGAAGCTTACTTTTCCTATGTAC
21712207 TCGATTCTAAAGTGATCAAAAAGAAGATTGAATTAGTACCAGTCGTGTGCGAGTATCCGGATGTG
66 TCGATTCTAAAGTGATCAAAAAGAAGATTGAATTAGTACCAGTCGTGTGCGAGTATCCGGATGTG
21712272 TTTCTTAAAGAATTACCGGGTTTGCCACCAATTCGAAAGGTAGAGTTTGGCATTGAGTTAGTGCC
131 TTTCTTAAAGAATTACCGGGTTTGCCACCAATTCGAAAGGTAGAGTTTGGCATTGAGTTAGTGCC
21712337 GGGGACAACTAGGATTTCGATACCTCCGTACAAAATGGCACTGACTGAATTAAAAGAGTTGAAAG
196 GGGGACAACTAGGATTTCGATACCTCCGTACAAAATGGCACTGACTGAATTAAAAGAGTTGAAAG
21712402 CTCAGTTGCAAGAATTGACAGATAGAGGTTTCGCACGATCGAGTTTTTCTCCCTAGGGTGCACCG
261 CTCAGTTGCAAGAATTGACAGATAGAGGTTTCGCACGATCGAGTTTTTCTCCCTAGGGTGCACCG
21712467 GTTTTGTTTGTGAAAAAGAAAAACGAAACTATGAGAATGTGCATCGATTATCGACAGCCCAATAA
326 GTTTTGTTTGTGAAAAAGAAAAACGAAACTATGAGAATGTGCATCGATTATCGACAGCCCAATAA
21712532 AGTGACCCTAAAGAATAAATATCCTCTGCCACATATTGACGATCTGTTTGATCAGTTGAAAGGGG
391 AGTGACCCTAAAGAATAAATATCCTCTGCCACATATTGACGATCTGTTTGATCAGTTGAAAGGGG
21712597 CTACAGTGTTTTCAATGATAGATATGAGATTGGGTTACTATCAGTTGCGAGTTAAAGACTCCGAT
456 CTACAGTGTTTTCAATGATAGATATGAGATTGGGTTACTATCAGTTGCGAGTTAAAGACTCCGAT
21712662 GTGTAGAAAACTGCTTTCTGAATGAGGTATGGACATTATGAGTTTTTAGTTATGCCTTTTGGACT
521 GTGTAGAAAACTGCTTTCTGAATGAGGTATGGACATTATGAGTTTTTAGTTATGCCTTTTGGACT
21712727 AACAAATGCACCTACTGCTTTTATA
586 AACAAATGCACCTACTGCTTTTATA
*
21712752 AATTT
1 GATTT
21712757 AATGAATCAT
Statistics
Matches: 614, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
610 614 1.00
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (610 bp):
GATTTCTTCGATGTTAGCTCAGAAATATGTGAGAAAGGGTTGTGAAGCTTACTTTTCCTATGTAC
TCGATTCTAAAGTGATCAAAAAGAAGATTGAATTAGTACCAGTCGTGTGCGAGTATCCGGATGTG
TTTCTTAAAGAATTACCGGGTTTGCCACCAATTCGAAAGGTAGAGTTTGGCATTGAGTTAGTGCC
GGGGACAACTAGGATTTCGATACCTCCGTACAAAATGGCACTGACTGAATTAAAAGAGTTGAAAG
CTCAGTTGCAAGAATTGACAGATAGAGGTTTCGCACGATCGAGTTTTTCTCCCTAGGGTGCACCG
GTTTTGTTTGTGAAAAAGAAAAACGAAACTATGAGAATGTGCATCGATTATCGACAGCCCAATAA
AGTGACCCTAAAGAATAAATATCCTCTGCCACATATTGACGATCTGTTTGATCAGTTGAAAGGGG
CTACAGTGTTTTCAATGATAGATATGAGATTGGGTTACTATCAGTTGCGAGTTAAAGACTCCGAT
GTGTAGAAAACTGCTTTCTGAATGAGGTATGGACATTATGAGTTTTTAGTTATGCCTTTTGGACT
AACAAATGCACCTACTGCTTTTATA
Found at i:21715254 original size:42 final size:42
Alignment explanation
Indices: 21715128--21715289 Score: 119
Period size: 43 Copynumber: 3.8 Consensus size: 42
21715118 TGGGATTTCA
* * *
21715128 GTATATGATTTTTGTGTAAGACCACGTCTGGGATAGTGCCACC
1 GTATATGA-TTTCGTGTAAGACCACGTCTGGGATAGTGGCATC
* * * * * *
21715171 G-ATTTGAGATTTACGTGTAAAACCATGTTTGGGACATTGGCATC
1 GTATAT--GATTT-CGTGTAAGACCACGTCTGGGATAGTGGCATC
** * *
21715215 GTATATGATTTCGTGTAAGACCTTGTCTGAGATAGTGGCATT
1 GTATATGATTTCGTGTAAGACCACGTCTGGGATAGTGGCATC
* * * *
21715257 GATATTTGATTACATGTAAGACCTCGTCTGGGA
1 G-TATATGATTTCGTGTAAGACCACGTCTGGGA
21715290 CGTTGGCATT
Statistics
Matches: 92, Mismatches: 22, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
42 28 0.30
43 35 0.38
44 26 0.28
45 3 0.03
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (42 bp):
GTATATGATTTCGTGTAAGACCACGTCTGGGATAGTGGCATC
Found at i:21715297 original size:43 final size:42
Alignment explanation
Indices: 21715200--21715302 Score: 109
Period size: 43 Copynumber: 2.4 Consensus size: 42
21715190 AAACCATGTT
* * * * *
21715200 TGGGACATTGGCATCGTATATGATTTCGTGTAAGACCTTGTC
1 TGGGACGTTGGCATTGTATATGATTACATGTAAGACCTCGTC
* * *
21715242 TGAGATAG-TGGCATTGATATTTGATTACATGTAAGACCTCGTC
1 TGGGA-CGTTGGCATTG-TATATGATTACATGTAAGACCTCGTC
21715285 TGGGACGTTGGCATTGTA
1 TGGGACGTTGGCATTGTA
21715303 CGAGCTTTTC
Statistics
Matches: 48, Mismatches: 10, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
42 14 0.29
43 34 0.71
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.35
Consensus pattern (42 bp):
TGGGACGTTGGCATTGTATATGATTACATGTAAGACCTCGTC
Found at i:21718313 original size:21 final size:21
Alignment explanation
Indices: 21718261--21718315 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
21718251 ACCATTGTTT
* *
21718261 CTAATCTCACAGCTACAGTAT
1 CTAATCTCACCGCTACAGTAA
*
21718282 CCAATCTCACCGCTACAGTAA
1 CTAATCTCACCGCTACAGTAA
21718303 CTAATCTCACCGC
1 CTAATCTCACCGC
21718316 CACCGCTGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.31, C:0.36, G:0.09, T:0.24
Consensus pattern (21 bp):
CTAATCTCACCGCTACAGTAA
Found at i:21721165 original size:136 final size:136
Alignment explanation
Indices: 21720921--21721193 Score: 501
Period size: 136 Copynumber: 2.0 Consensus size: 136
21720911 ATATTATTGT
* *
21720921 TATTACTCGAGCAGGTAACAGACTAACAACGTTACAACAGAGCCTACAGTACATAAAGGAAAAGA
1 TATTACTCGAGCAGGTAACAAACTAACAACGTTACAAAAGAGCCTACAGTACATAAAGGAAAAGA
*
21720986 GTAAAATGATAATTTTAACATTATGAAGCGGTCCTAATTATTTAGGGTGTATATGTTTAATGAAA
66 ATAAAATGATAATTTTAACATTATGAAGCGGTCCTAATTATTTAGGGTGTATATGTTTAATGAAA
21721051 AATAGC
131 AATAGC
* *
21721057 TATTACTCGAGCAGGTAACAAACTAACAATGTTACAAAAGAGCCTACAGTACATAAAGGAAAATA
1 TATTACTCGAGCAGGTAACAAACTAACAACGTTACAAAAGAGCCTACAGTACATAAAGGAAAAGA
21721122 ATAAAATGATAATTTTAACATTATGAAGCGGTCCTAATTATTTAGGGTGTATATGTTTAATGAAA
66 ATAAAATGATAATTTTAACATTATGAAGCGGTCCTAATTATTTAGGGTGTATATGTTTAATGAAA
21721187 AATAGC
131 AATAGC
21721193 T
1 T
21721194 TACATGAAAT
Statistics
Matches: 132, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
136 132 1.00
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.28
Consensus pattern (136 bp):
TATTACTCGAGCAGGTAACAAACTAACAACGTTACAAAAGAGCCTACAGTACATAAAGGAAAAGA
ATAAAATGATAATTTTAACATTATGAAGCGGTCCTAATTATTTAGGGTGTATATGTTTAATGAAA
AATAGC
Found at i:21721528 original size:21 final size:21
Alignment explanation
Indices: 21721497--21721546 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 21
21721487 TATATTTAGA
21721497 AATATAAT-AAATTATTAATATT
1 AATA-AATAAAATTATT-ATATT
*
21721519 AATAAATAAAATTATTATTTT
1 AATAAATAAAATTATTATATT
21721540 AATAAAT
1 AATAAAT
21721547 TATTTAATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 14 0.54
22 12 0.46
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
AATAAATAAAATTATTATATT
Found at i:21730895 original size:53 final size:53
Alignment explanation
Indices: 21730829--21730977 Score: 192
Period size: 53 Copynumber: 2.8 Consensus size: 53
21730819 GGCATTGATG
* * * *
21730829 GACCATATCGTGTAAGA-TCATAACTGGTGGGTTATGGCATCATATGGGACGAA
1 GACCATATCGTGTAAGACT-GTAACTGGTGGGTTATGGCATCATATAGAAAGAA
* * * *
21730882 GATCATATCGTGTAAAACTGTAACTGGTGGGTTATGGTATGATATAGAAAGAA
1 GACCATATCGTGTAAGACTGTAACTGGTGGGTTATGGCATCATATAGAAAGAA
* *
21730935 GACCATATCGTGTAAGACTGTAACTTGTAGGTTATGGCATCAT
1 GACCATATCGTGTAAGACTGTAACTGGTGGGTTATGGCATCAT
21730978 GTGGAAATAT
Statistics
Matches: 81, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
53 80 0.99
54 1 0.01
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.30
Consensus pattern (53 bp):
GACCATATCGTGTAAGACTGTAACTGGTGGGTTATGGCATCATATAGAAAGAA
Found at i:21731150 original size:28 final size:28
Alignment explanation
Indices: 21731102--21731366 Score: 262
Period size: 28 Copynumber: 9.5 Consensus size: 28
21731092 CAAGAGAAGA
*
21731102 GAAGCCTTTGTGGCGATCTCTGTTAAAC
1 GAAGCCTTTGTGGCGATCTCTGTTAAAG
* * * *
21731130 GAATCATTTGTGGCGACCTCTGTTAATG
1 GAAGCCTTTGTGGCGATCTCTGTTAAAG
* * *
21731158 AAAGCCTTTGTGGTGATCTCTATTAAAG
1 GAAGCCTTTGTGGCGATCTCTGTTAAAG
* * *
21731186 AAAGCCTTTGTGGTGATCTCTGTTAAAA
1 GAAGCCTTTGTGGCGATCTCTGTTAAAG
* *
21731214 GAAGCCTTTGTGGCGAGCTTTGTTAAAG
1 GAAGCCTTTGTGGCGATCTCTGTTAAAG
* * *
21731242 GAATCCTTTGTGGCCATCTCCGTTAAAG
1 GAAGCCTTTGTGGCGATCTCTGTTAAAG
* *
21731270 GAAGCATTTGTGGCAATCTCTGTTAAAG
1 GAAGCCTTTGTGGCGATCTCTGTTAAAG
** * * * *
21731298 GAAGCCTTTGTTACGATATCTATAAAAT
1 GAAGCCTTTGTGGCGATCTCTGTTAAAG
* * *
21731326 GAAGCCTTTGTGGCTATCTTTG-AAAAG
1 GAAGCCTTTGTGGCGATCTCTGTTAAAG
*
21731353 GAATGCCTTCGTGG
1 GAA-GCCTTTGTGG
21731367 TGCAGTATAA
Statistics
Matches: 192, Mismatches: 44, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
27 7 0.04
28 185 0.96
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (28 bp):
GAAGCCTTTGTGGCGATCTCTGTTAAAG
Found at i:21734323 original size:21 final size:21
Alignment explanation
Indices: 21734297--21734350 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 21
21734287 CGGGTACTCA
21734297 AAAATTTTTTCAAAAAATATT
1 AAAATTTTTTCAAAAAATATT
*
21734318 AAAATTTTTT-GAAAAATATT
1 AAAATTTTTTCAAAAAATATT
*
21734338 AAAA-ATTTTCAAA
1 AAAATTTTTTCAAA
21734351 GGTGCAGGGG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 4 0.14
20 15 0.52
21 10 0.34
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.41
Consensus pattern (21 bp):
AAAATTTTTTCAAAAAATATT
Found at i:21734332 original size:20 final size:22
Alignment explanation
Indices: 21734296--21734346 Score: 79
Period size: 21 Copynumber: 2.4 Consensus size: 22
21734286 TCGGGTACTC
21734296 AAAAATTTTTTCAAAAAATATT
1 AAAAATTTTTTCAAAAAATATT
*
21734318 -AAAATTTTTT-GAAAAATATT
1 AAAAATTTTTTCAAAAAATATT
21734338 AAAAATTTT
1 AAAAATTTT
21734347 CAAAGGTGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 9 0.33
21 18 0.67
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (22 bp):
AAAAATTTTTTCAAAAAATATT
Found at i:21735737 original size:25 final size:25
Alignment explanation
Indices: 21735709--21735774 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
21735699 TACGAATTGT
* ***
21735709 ATATCGGGAAGCTCTTGCTAGCCAA
1 ATATCGGGAAGCTCATAAAAGCCAA
*
21735734 ATATCGAGAAGCTCATAAAAGCCAA
1 ATATCGGGAAGCTCATAAAAGCCAA
*
21735759 GTATCGGGAAGCTCAT
1 ATATCGGGAAGCTCAT
21735775 GAGAGTTGTA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (25 bp):
ATATCGGGAAGCTCATAAAAGCCAA
Found at i:21737282 original size:22 final size:22
Alignment explanation
Indices: 21737257--21737312 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 22
21737247 TGATGAAGGT
*
21737257 GATATCGCGATACCCT-GAAGAG
1 GATATTGCGATA-CCTAGAAGAG
*
21737279 GATATTGTGATACCTAGAAGAG
1 GATATTGCGATACCTAGAAGAG
21737301 GATATTGCGATA
1 GATATTGCGATA
21737313 TCTTGGGCAG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
21 3 0.10
22 27 0.90
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.25
Consensus pattern (22 bp):
GATATTGCGATACCTAGAAGAG
Found at i:21738435 original size:17 final size:16
Alignment explanation
Indices: 21738413--21738448 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
21738403 TGATCCTCAC
*
21738413 TTTTCTTTCTTTCATTT
1 TTTTCTTTCTCTC-TTT
21738430 TTTTCTTTCTCTCTTT
1 TTTTCTTTCTCTCTTT
21738446 TTT
1 TTT
21738449 CAAGCATGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTCTTTCTCTCTTT
Found at i:21745627 original size:54 final size:54
Alignment explanation
Indices: 21745552--21745674 Score: 210
Period size: 54 Copynumber: 2.3 Consensus size: 54
21745542 TTCATGGTGG
* *
21745552 CTATTGCATCATATGGGGATATGAAGACCGCATATTGTAAGACCTAGTTTGGGA
1 CTATGGCATCATGTGGGGATATGAAGACCGCATATTGTAAGACCTAGTTTGGGA
*
21745606 CTATGGCATCATGTGGGGATATGAATACCGCATATTGTAAGACCTAGTTTGGGA
1 CTATGGCATCATGTGGGGATATGAAGACCGCATATTGTAAGACCTAGTTTGGGA
*
21745660 CTATGGCGTCATGTG
1 CTATGGCATCATGTG
21745675 CGAAAAATGA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (54 bp):
CTATGGCATCATGTGGGGATATGAAGACCGCATATTGTAAGACCTAGTTTGGGA
Found at i:21745941 original size:29 final size:30
Alignment explanation
Indices: 21745907--21745982 Score: 95
Period size: 29 Copynumber: 2.6 Consensus size: 30
21745897 TAAAATGGAT
*
21745907 GCCTTTGTGGCTGATTCTAT-TTTATGAG-A
1 GCCTTTGTGGCTGATTCT-TGTGTATGAGAA
21745936 GCCTTTGTGGCTGATT-TTGTGTATGAGAA
1 GCCTTTGTGGCTGATTCTTGTGTATGAGAA
* *
21745965 ACCCTTGTGGCTGATTCT
1 GCCTTTGTGGCTGATTCT
21745983 GCTGAATGCG
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
27 1 0.02
28 8 0.20
29 31 0.76
30 1 0.02
ACGTcount: A:0.16, C:0.16, G:0.26, T:0.42
Consensus pattern (30 bp):
GCCTTTGTGGCTGATTCTTGTGTATGAGAA
Found at i:21750917 original size:21 final size:21
Alignment explanation
Indices: 21750891--21750943 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
21750881 GAGGTGATCA
*
21750891 CGGGTCGGGCCGGGCCAGGTT
1 CGGGTCGGGCCGGGCCAAGTT
21750912 CGGGTCGGGCCGGGCCAAGTT
1 CGGGTCGGGCCGGGCCAAGTT
* *
21750933 CAGGCCGGGCC
1 CGGGTCGGGCC
21750944 TATAAAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.08, C:0.32, G:0.49, T:0.11
Consensus pattern (21 bp):
CGGGTCGGGCCGGGCCAAGTT
Found at i:21753944 original size:5 final size:5
Alignment explanation
Indices: 21753936--21753972 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
21753926 TTTAATAAGC
21753936 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
21753973 AGTAGAAGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:21754173 original size:17 final size:18
Alignment explanation
Indices: 21754151--21754211 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 18
21754141 TCATTGCAGC
21754151 ATATATATAAATTAT-TA
1 ATATATATAAATTATATA
* *
21754168 ATATATTATATACTATATA
1 ATATA-TATAAATTATATA
*
21754187 ATATGATATAACATCATATA
1 ATAT-ATATAA-ATTATATA
21754207 ATATA
1 ATATA
21754212 GTAGGAGGGA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
17 5 0.14
18 8 0.23
19 11 0.31
20 11 0.31
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.43
Consensus pattern (18 bp):
ATATATATAAATTATATA
Found at i:21756044 original size:57 final size:57
Alignment explanation
Indices: 21755981--21756627 Score: 771
Period size: 57 Copynumber: 11.4 Consensus size: 57
21755971 AAGAAAAGCT
* * * *
21755981 TTTGTGGCAAAACTCTAGAAAGGTAAGCCTATATGGCAAACCTGTTAAAGGACAACC
1 TTTGTGGCAAAACTCTAGAAAGGTAAGCCTTTGTGGCGAACCTGTTAAAGGACAGCC
* * * * ** * * *
21756038 TTTGTGGAAAAACTCTGGAAATGTAAGCCTTTATGGTAAACCTTTTAAAGGAAAGTC
1 TTTGTGGCAAAACTCTAGAAAGGTAAGCCTTTGTGGCGAACCTGTTAAAGGACAGCC
* * * * * * * *
21756095 TTTATCGCAAAACTCTAGAAAGTTAAGCCTATGTAGTGAACCTATTAAAGGATAGCC
1 TTTGTGGCAAAACTCTAGAAAGGTAAGCCTTTGTGGCGAACCTGTTAAAGGACAGCC
* * *
21756152 TTTGTGGCAAAAATCTGGAAAGGTAAGCCTTTGTGGCGAACCTGTTAAAGGATAGCC
1 TTTGTGGCAAAACTCTAGAAAGGTAAGCCTTTGTGGCGAACCTGTTAAAGGACAGCC
* * * * *
21756209 TTTGTGGCAAAACTCTAAAAAGGTAAGCCTATGTGGTGAACCTATTAAAGGACAACC
1 TTTGTGGCAAAACTCTAGAAAGGTAAGCCTTTGTGGCGAACCTGTTAAAGGACAGCC
* * * * *
21756266 TTTATGGAAAAACTCTGGAAAGGTAAGCCTTTGTGGCAAACCTGTTAAAGAACAGCC
1 TTTGTGGCAAAACTCTAGAAAGGTAAGCCTTTGTGGCGAACCTGTTAAAGGACAGCC
* *
21756323 TTTGCGGCAAAACTCTAGAAAGGTAAGCCTTTGTGGCGAACCTGTTAAAGGAGAGCC
1 TTTGTGGCAAAACTCTAGAAAGGTAAGCCTTTGTGGCGAACCTGTTAAAGGACAGCC
*
21756380 TTTGTGGCAAAACTCT-GAAAAGGTAAGCCTTTGTGGCGAACCTGTTAAAGGATAGCC
1 TTTGTGGCAAAACTCTAG-AAAGGTAAGCCTTTGTGGCGAACCTGTTAAAGGACAGCC
* * * * * *
21756437 TTTGT-GAAAAAATCTGGAAAGGTAAACCTTTGTGGCAAACCTGTTAAAGAACAGCC
1 TTTGTGGCAAAACTCTAGAAAGGTAAGCCTTTGTGGCGAACCTGTTAAAGGACAGCC
* *
21756493 TTTGCGGCAAAACTCTAGAAAGGTAAGCCTTTGTGGCGAACCTGTTAAAGGATAGCC
1 TTTGTGGCAAAACTCTAGAAAGGTAAGCCTTTGTGGCGAACCTGTTAAAGGACAGCC
* * * * * * * *
21756550 TTTGT-GAAAAAATCTGGAAAGGTAAACCTTTGTGGCAAACCTATTAAAGGGCAACC
1 TTTGTGGCAAAACTCTAGAAAGGTAAGCCTTTGTGGCGAACCTGTTAAAGGACAGCC
*
21756606 TTTGTGGCAAATCTCTA-AAAGG
1 TTTGTGGCAAAACTCTAGAAAGG
21756628 AAACACCTTA
Statistics
Matches: 500, Mismatches: 86, Indels: 9
0.84 0.14 0.02
Matches are distributed among these distances:
56 100 0.20
57 400 0.80
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (57 bp):
TTTGTGGCAAAACTCTAGAAAGGTAAGCCTTTGTGGCGAACCTGTTAAAGGACAGCC
Found at i:21756438 original size:28 final size:28
Alignment explanation
Indices: 21756133--21756616 Score: 283
Period size: 28 Copynumber: 17.1 Consensus size: 28
21756123 CTATGTAGTG
*
21756133 AACCTATTAAAGGATAGCCTTTGTGGCAAA
1 AACCTGTTAAAGGATAGCCTTTGTGGC--A
* * *
21756163 AATCTG-GAAAGG-TAAGCCTTTGTGGCG
1 AACCTGTTAAAGGAT-AGCCTTTGTGGCA
21756190 AACCTGTTAAAGGATAGCCTTTGTGGCA
1 AACCTGTTAAAGGATAGCCTTTGTGGCA
* * * * **
21756218 AAACTCTAAAAAGG-TAAGCCTATGTGGTG
1 AACCTGT-TAAAGGAT-AGCCTTTGTGGCA
* * * * *
21756247 AACCTATTAAAGGACAACCTTTATGGAAA
1 AACCTGTTAAAGGATAGCCTTTGTGG-CA
*
21756276 AACTCTG-GAAAGG-TAAGCCTTTGTGGCA
1 AAC-CTGTTAAAGGAT-AGCCTTTGTGGCA
* * *
21756304 AACCTGTTAAAGAACAGCCTTTGCGGCA
1 AACCTGTTAAAGGATAGCCTTTGTGGCA
* * * *
21756332 AAACTCTAGAAAGG-TAAGCCTTTGTGGCG
1 AACCTGT-TAAAGGAT-AGCCTTTGTGGCA
*
21756361 AACCTGTTAAAGGAGAGCCTTTGTGGCAA
1 AACCTGTTAAAGGATAGCCTTTGTGGC-A
* *
21756390 AACTCTG-AAAAGG-TAAGCCTTTGTGGCG
1 AAC-CTGTTAAAGGAT-AGCCTTTGTGGCA
**
21756418 AACCTGTTAAAGGATAGCCTTTGTGAAAA
1 AACCTGTTAAAGGATAGCCTTTGTG-GCA
* * *
21756447 AATCTG-GAAAGG-TAAACCTTTGTGGCA
1 AACCTGTTAAAGGAT-AGCCTTTGTGGCA
* * *
21756474 AACCTGTTAAAGAACAGCCTTTGCGGCA
1 AACCTGTTAAAGGATAGCCTTTGTGGCA
* * * *
21756502 AAACTCTAGAAAGG-TAAGCCTTTGTGGCG
1 AACCTGT-TAAAGGAT-AGCCTTTGTGGCA
**
21756531 AACCTGTTAAAGGATAGCCTTTGTGAAAA
1 AACCTGTTAAAGGATAGCCTTTGTG-GCA
* * *
21756560 AATCTG-GAAAGG-TAAACCTTTGTGGCA
1 AACCTGTTAAAGGAT-AGCCTTTGTGGCA
* ** *
21756587 AACCTATTAAAGGGCAACCTTTGTGGCA
1 AACCTGTTAAAGGATAGCCTTTGTGGCA
21756615 AA
1 AA
21756617 TCTCTAAAAG
Statistics
Matches: 340, Mismatches: 84, Indels: 62
0.70 0.17 0.13
Matches are distributed among these distances:
27 24 0.07
28 180 0.53
29 127 0.37
30 9 0.03
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.25
Consensus pattern (28 bp):
AACCTGTTAAAGGATAGCCTTTGTGGCA
Found at i:21756626 original size:28 final size:28
Alignment explanation
Indices: 21756574--21756627 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
21756564 TGGAAAGGTA
*
21756574 AACCTTTGTGGCAAACCTATTAAAGGGC
1 AACCTTTGTGGCAAACCTATAAAAGGGC
* *
21756602 AACCTTTGTGGCAAATCTCTAAAAGG
1 AACCTTTGTGGCAAACCTATAAAAGG
21756628 AAACACCTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.26
Consensus pattern (28 bp):
AACCTTTGTGGCAAACCTATAAAAGGGC
Found at i:21775313 original size:25 final size:25
Alignment explanation
Indices: 21775285--21775335 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
21775275 GGACCTAAGC
21775285 ATGCATTTCAGCCTTCTCATATGTT
1 ATGCATTTCAGCCTTCTCATATGTT
21775310 ATGCATTTCAGCCTTCTCATATGTT
1 ATGCATTTCAGCCTTCTCATATGTT
21775335 A
1 A
21775336 ACTTCTATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.22, C:0.24, G:0.12, T:0.43
Consensus pattern (25 bp):
ATGCATTTCAGCCTTCTCATATGTT
Found at i:21777480 original size:18 final size:20
Alignment explanation
Indices: 21777457--21777497 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
21777447 AATTAAAAAC
*
21777457 TATAATGTAA-ATAT-ATTT
1 TATAATATAAGATATAATTT
21777475 TATAATATAAGATATAATTT
1 TATAATATAAGATATAATTT
21777495 TAT
1 TAT
21777498 TTAGTACATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 9 0.45
19 4 0.20
20 7 0.35
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (20 bp):
TATAATATAAGATATAATTT
Found at i:21778155 original size:15 final size:18
Alignment explanation
Indices: 21778135--21778171 Score: 53
Period size: 15 Copynumber: 2.2 Consensus size: 18
21778125 AACTATGTTC
21778135 TATGTTTT-TA-TAAT-A
1 TATGTTTTATATTAATGA
21778150 TATGTTTTATATTAATGA
1 TATGTTTTATATTAATGA
21778168 TATG
1 TATG
21778172 CACGCTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 8 0.42
16 2 0.11
17 4 0.21
18 5 0.26
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (18 bp):
TATGTTTTATATTAATGA
Found at i:21778348 original size:147 final size:152
Alignment explanation
Indices: 21778064--21778349 Score: 322
Period size: 151 Copynumber: 1.9 Consensus size: 152
21778054 GTAGATTATA
* * *
21778064 ATATACACAATCAATATCATATAATTAAGATAGATTATTAATGATATGCATCACTATATATAACT
1 ATATACACAATCAATATCATATAATTAAGATAAATTATTAATGATATGAACCACTATATATAACT
* * * ** * * *
21778129 ATGTTCTATGTTTTTATAATATATGTTTTATATTAATGATATGCACGCTTAAACCCTAAACTTGT
66 A-GATCTATGATATTATAATATACATTTTATATTAATGATA-GCACACTTAAACCCTAAAATTGC
21778194 AACTAACTTATGGTAAAATAAATT
129 AACTAACTTATGGTAAAATAAATT
*
21778218 ATATACA-AA-CAATAT-ATATAATTAAGGTAAATTATTAATGATATGTAACCA-TATATAT-AC
1 ATATACACAATCAATATCATATAATTAAGATAAATTATTAATGATATG-AACCACTATATATAAC
21778278 -A-AT-TATGATATTATAATATACATATTTATATTAATGATA-CACAACATTAAACCC-AAAATG
65 TAGATCTATGATATTATAATATACAT-TTTATATTAATGATAGCAC-AC-TTAAACCCTAAAAT-
*
21778338 TGCAATTAACTT
126 TGCAACTAACTT
21778350 CATGATACAT
Statistics
Matches: 114, Mismatches: 13, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
145 3 0.03
146 21 0.18
147 34 0.30
149 1 0.01
150 2 0.02
151 35 0.31
152 9 0.08
153 2 0.02
154 7 0.06
ACGTcount: A:0.44, C:0.11, G:0.07, T:0.38
Consensus pattern (152 bp):
ATATACACAATCAATATCATATAATTAAGATAAATTATTAATGATATGAACCACTATATATAACT
AGATCTATGATATTATAATATACATTTTATATTAATGATAGCACACTTAAACCCTAAAATTGCAA
CTAACTTATGGTAAAATAAATT
Found at i:21782122 original size:6 final size:6
Alignment explanation
Indices: 21782111--21782140 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
21782101 GATTTTCTCC
21782111 AAAATG AAAATG AAAATG AAAATG AAAATG
1 AAAATG AAAATG AAAATG AAAATG AAAATG
21782141 GAGAAATTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.17
Consensus pattern (6 bp):
AAAATG
Found at i:21792193 original size:42 final size:42
Alignment explanation
Indices: 21792134--21792221 Score: 158
Period size: 42 Copynumber: 2.1 Consensus size: 42
21792124 TGTGGAGGTC
*
21792134 CATTTAGAGGCATAGGTGTGGAGGTCCATTTACTTTTCGTTG
1 CATTTAGAGGCATAGGTGTGGAGGTCCATTTACTTTTCATTG
*
21792176 CATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTTTTCATTG
1 CATTTAGAGGCATAGGTGTGGAGGTCCATTTACTTTTCATTG
21792218 CATT
1 CATT
21792222 GTATATGAAG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.19, C:0.16, G:0.26, T:0.39
Consensus pattern (42 bp):
CATTTAGAGGCATAGGTGTGGAGGTCCATTTACTTTTCATTG
Found at i:21793215 original size:147 final size:146
Alignment explanation
Indices: 21793024--21793490 Score: 469
Period size: 146 Copynumber: 3.1 Consensus size: 146
21793014 GAAAAGTTTT
* *
21793024 ATTTTTTTT-AAAAGAAGAGAAAGTTTAGAATTTAAAAA-ATAAAATATGTGTTTTAGTCATTTT
1 ATTTTTTTTAAAAAAAAGAGAAAGTTTAGATTTTAAAAATA-AAAATATGT-TTTTAGTCATTTT
* * **
21793087 AAAGAAAATTTTAAAATTTTAAAACAAAGTTGTGATTTTTTTCAACTATTTCAAAATAAAAGCTT
64 AAAGAAAATTTTAAATTTTTAAAACAAAGTTTTGATTTTTTTCAACTATTTCAAAATAAAATATT
21793152 TGATCTTTAA-AAAAATA
129 TGATCTTTAAGAAAAATA
* *
21793169 ATTTTTTTTAAAGAAAAAGAGAAAGTTTGGATTTTAAAAATAAAAATATATTTTTAGTCATTTTA
1 ATTTTTTTTAAA-AAAAAGAGAAAGTTTAGATTTTAAAAATAAAAATATGTTTTTAGTCATTTTA
* * * *
21793234 AAGGAAAGTTTT-AATTTTTAAAACAAAGTTTTAATTGTTTTCATCTATTTCAAAATAAAATATT
65 AA-GAAAATTTTAAATTTTTAAAACAAAGTTTTGATTTTTTTCAACTATTTCAAAATAAAATATT
21793298 TGATCTTTAAGAAAAATGA
129 TGATCTTTAAGAAAAAT-A
* * * * * *
21793317 TGTTTTTCTTTCTTTAAAAAAGGATAAAGTTTATATTTTTAAAATAAAAATATGTTTTTTTTAGT
1 ---ATTT-TTT-TTAAAAAAAAGAGAAAGTTTAGATTTTAAAAATAAAAATATG---TTTTTAGT
* * * * * *
21793382 CATTTTAAAAGAAAAGTTTGAATTTTTTAAAGCAAAATTTTGATCTTTTT-ATACTATTTCGAAA
58 CATTTT-AAAGAAAA-TTTTAAATTTTTAAAACAAAGTTTTGATTTTTTTCA-ACTATTTCAAAA
* * * *
21793446 -GAAATTTTTGATTTTTAAGAAAAGTA
120 TAAAATATTTGATCTTTAAGAAAAATA
*
21793472 ATGATTTTTTAAAAGAAAA
1 AT-TTTTTTTAAAA-AAAA
21793491 ATTTGATTTT
Statistics
Matches: 264, Mismatches: 38, Indels: 33
0.79 0.11 0.10
Matches are distributed among these distances:
145 9 0.03
146 73 0.28
147 46 0.17
148 2 0.01
151 8 0.03
152 41 0.16
153 5 0.02
155 19 0.07
156 28 0.11
157 33 0.12
ACGTcount: A:0.43, C:0.04, G:0.10, T:0.43
Consensus pattern (146 bp):
ATTTTTTTTAAAAAAAAGAGAAAGTTTAGATTTTAAAAATAAAAATATGTTTTTAGTCATTTTAA
AGAAAATTTTAAATTTTTAAAACAAAGTTTTGATTTTTTTCAACTATTTCAAAATAAAATATTTG
ATCTTTAAGAAAAATA
Found at i:21793413 original size:21 final size:22
Alignment explanation
Indices: 21793384--21793432 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
21793374 TTTTTAGTCA
*
21793384 TTTTAAAAG-AAAAGTTTGAAT-
1 TTTTTAAAGCAAAAGTTTG-ATC
*
21793405 TTTTTAAAGCAAAATTTTGATC
1 TTTTTAAAGCAAAAGTTTGATC
21793427 TTTTTA
1 TTTTTA
21793433 TACTATTTCG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 10 0.42
22 14 0.58
ACGTcount: A:0.39, C:0.04, G:0.10, T:0.47
Consensus pattern (22 bp):
TTTTTAAAGCAAAAGTTTGATC
Found at i:21793506 original size:22 final size:22
Alignment explanation
Indices: 21793473--21793517 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
21793463 AGAAAAGTAA
*
21793473 TGATTTTTTAAAA-GAAAAATT
1 TGATTTTCTAAAATGAAAAATT
21793494 TGATTTTGCTAAAATGAAAAATT
1 TGATTTT-CTAAAATGAAAAATT
21793517 T
1 T
21793518 AAAAATTCTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 7 0.33
22 5 0.24
23 9 0.43
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.42
Consensus pattern (22 bp):
TGATTTTCTAAAATGAAAAATT
Found at i:21806866 original size:12 final size:13
Alignment explanation
Indices: 21806842--21806870 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
21806832 GGGCTATAAC
21806842 TATTGCATTTATT
1 TATTGCATTTATT
21806855 TATTGC-TTTATT
1 TATTGCATTTATT
21806867 TATT
1 TATT
21806871 CATGTATGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (13 bp):
TATTGCATTTATT
Found at i:21814151 original size:42 final size:42
Alignment explanation
Indices: 21814092--21814402 Score: 388
Period size: 42 Copynumber: 7.2 Consensus size: 42
21814082 GAAAACATTT
** **
21814092 ATTGCATTTAGAGGCCCAGGTGTGGAGACCCATTTTCTTTTC
1 ATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTCACTTTTC
* *
21814134 ATTGCATTTAGAGGCCCAAGTGTGGAGGTTCATTCACTTTTC
1 ATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTCACTTTTC
* *
21814176 ATTGCATTTAGAGACCTAGGTGTGGAGGTCCATTCACTTTTC
1 ATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTCACTTTTC
* *
21814218 ATTTCATTGAGAGGCCCAGGTGTGGAGGTCCATTCACTTTTC
1 ATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTCACTTTTC
* *
21814260 ATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTCTTC
1 ATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTCACTTTTC
* * *
21814302 ATTACATTTAGAGGCCTAGGTGTGGAGATCCATTCACTCTTTATTGC
1 ATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTCA--C-TT-TT-C
* *
21814349 ATTTAGAGCATTTAGAGGCCCAGGTGTGGAGGACCATTTACTTTTC
1 A-TT---GCATTTAGAGGCCCAGGTGTGGAGGTCCATTCACTTTTC
21814395 ATTGCATT
1 ATTGCATT
21814403 GTAAATGAAG
Statistics
Matches: 232, Mismatches: 28, Indels: 18
0.83 0.10 0.06
Matches are distributed among these distances:
42 187 0.81
44 1 0.00
45 3 0.01
46 4 0.02
47 4 0.02
48 4 0.02
49 1 0.00
51 28 0.12
ACGTcount: A:0.21, C:0.20, G:0.24, T:0.35
Consensus pattern (42 bp):
ATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTCACTTTTC
Found at i:21814326 original size:126 final size:131
Alignment explanation
Indices: 21814096--21814402 Score: 428
Period size: 126 Copynumber: 2.4 Consensus size: 131
21814086 ACATTTATTG
*
21814096 CATTTAGAGGCCCAGGTGTGGA-GACCCATTTTCTTTTCATTGCATTTAGAGGCCCAAGTGTGGA
1 CATTTAGAGGCCCAGGTGTGGAGGA-CCATTTACTTTTCATTGCATTTAGAGGCCCAAGTGTGGA
* * * *
21814160 GGTTCATTCACTTTTCATTGCATTTAGAGACCTAGGTGTGGAGGTCCATTCA-C-TT-TT-CATT
65 GGTCCATTCACTCTTCATTACATTTAGAGACCTAGGTGTGGAGATCCATTCACCTTTATTGCATT
21814221 T-
130 TA
* * * *
21814222 CATTGAGAGGCCCAGGTGTGGAGGTCCATTCACTTTTCATTGCATTTAGAGGCCCAGGTGTGGAG
1 CATTTAGAGGCCCAGGTGTGGAGGACCATTTACTTTTCATTGCATTTAGAGGCCCAAGTGTGGAG
* *
21814287 GTCCATTTACTCTTCATTACATTTAGAGGCCTAGGTGTGGAGATCCATTCACTCTTTATTGCATT
66 GTCCATTCACTCTTCATTACATTTAGAGACCTAGGTGTGGAGATCCATTCAC-CTTTATTGCATT
21814352 TAGA
130 T--A
21814356 GCATTTAGAGGCCCAGGTGTGGAGGACCATTTACTTTTCATTGCATT
1 -CATTTAGAGGCCCAGGTGTGGAGGACCATTTACTTTTCATTGCATT
21814403 GTAAATGAAG
Statistics
Matches: 157, Mismatches: 14, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
126 103 0.66
127 1 0.01
128 1 0.01
129 2 0.01
130 2 0.01
131 5 0.03
135 43 0.27
ACGTcount: A:0.21, C:0.20, G:0.24, T:0.35
Consensus pattern (131 bp):
CATTTAGAGGCCCAGGTGTGGAGGACCATTTACTTTTCATTGCATTTAGAGGCCCAAGTGTGGAG
GTCCATTCACTCTTCATTACATTTAGAGACCTAGGTGTGGAGATCCATTCACCTTTATTGCATTT
A
Found at i:21814386 original size:51 final size:51
Alignment explanation
Indices: 21814306--21814402 Score: 144
Period size: 51 Copynumber: 1.9 Consensus size: 51
21814296 CTCTTCATTA
*
21814306 CATTTAGAGGCCTAGGTGTGGAGATCCATTCACTCTTT-ATTGCATTTAGAG
1 CATTTAGAGGCCCAGGTGTGGAGATCCATTCACT-TTTCATTGCATTTAGAG
*
21814357 CATTTAGAGGCCCAGGTGTGGAGGA-CCATTTACTTTTCATTGCATT
1 CATTTAGAGGCCCAGGTGTGGA-GATCCATTCACTTTTCATTGCATT
21814403 GTAAATGAAG
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
50 3 0.07
51 37 0.88
52 2 0.05
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.35
Consensus pattern (51 bp):
CATTTAGAGGCCCAGGTGTGGAGATCCATTCACTTTTCATTGCATTTAGAG
Found at i:21815389 original size:148 final size:150
Alignment explanation
Indices: 21815199--21815656 Score: 559
Period size: 148 Copynumber: 3.0 Consensus size: 150
21815189 GGAAAAGTTT
*
21815199 TGATTTTTTTTAA-AAGAAGAGAAAGTTTAGATTTTAAAAAATAAAAATATGTTTTTTAGTCATT
1 TGATTTTTTTTAAGAAAAAGAGAAAGTTTAGATTTTAAAAAATAAAAATATGTTTTTTAGTCATT
* * *
21815263 TTAAAGAAAAATTTAAAATTTTAAAACAAAGTTTTGATTTTTCTCAACTATTTCAAAATAAAAGC
66 TTAAAGAAAAGTTTAAATTTTTAAAACAAAATTTTGATTTTT-TCAACTATTTCAAAATAAAAGC
21815328 TTTGATCTTTAA-AAAAA-AA
130 TTTGATCTTTAAGAAAAATAA
* * *
21815347 T-ATTTTTTTAAAGAAAAAGAGGAAGTTTAGATTTTAAAAAATAAAAATATATTTTTTAGTCATT
1 TGATTTTTTTTAAGAAAAAGAGAAAGTTTAGATTTTAAAAAATAAAAATATGTTTTTTAGTCATT
* * * * *
21815411 TTAAAGGAAAGTTTTAATTTTTAAAACAAAATTTTAATTTTTTTTCAACTAGTTCAAAATAAAAT
66 TTAAAGAAAAGTTTAAATTTTTAAAACAAAATTTTGA--TTTTTTCAACTATTTCAAAATAAAAG
**
21815476 CTTTGATCTTTAAGAAAAATGG
129 CTTTGATCTTTAAGAAAAATAA
* ** * *
21815498 TGTTTTTCTTTCTTTGAAAAAGCAGAAAGTTTAGATTTT-TAAAATAAAAATACGTTTTTTTAGT
1 TGATTTT-TTT-TAAGAAAAAG-AGAAAGTTTAGATTTTAAAAAATAAAAATATG-TTTTTTAGT
* *
21815562 CATTTTAAAGGAAAAGTTTGAATTTTTTAAAACAAAATTTTGATCTTTTTCAACTATTTCGAAAT
62 CATTTTAAA-GAAAAGTTT-AAATTTTTAAAACAAAATTTTGAT-TTTTTCAACTATTTCAAAAT
** * *
21815627 -AAATTTTTGATTTTTAAGAAAAGTAA
124 AAAAGCTTTGATCTTTAAGAAAAATAA
21815653 TGAT
1 TGAT
21815657 CTCTTACAAG
Statistics
Matches: 263, Mismatches: 34, Indels: 19
0.83 0.11 0.06
Matches are distributed among these distances:
147 10 0.04
148 80 0.30
149 32 0.12
150 10 0.04
151 1 0.00
152 4 0.02
153 3 0.01
154 19 0.07
155 58 0.22
156 26 0.10
157 20 0.08
ACGTcount: A:0.42, C:0.05, G:0.10, T:0.42
Consensus pattern (150 bp):
TGATTTTTTTTAAGAAAAAGAGAAAGTTTAGATTTTAAAAAATAAAAATATGTTTTTTAGTCATT
TTAAAGAAAAGTTTAAATTTTTAAAACAAAATTTTGATTTTTTCAACTATTTCAAAATAAAAGCT
TTGATCTTTAAGAAAAATAA
Found at i:21816277 original size:22 final size:21
Alignment explanation
Indices: 21816232--21816286 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
21816222 CACTTGTATA
*
21816232 ATTTTTATTTATTCTTCTTTC
1 ATTTTTATTTATTCTTCTTCC
21816253 ATTTTTATTTATT-TTCATGTCC
1 ATTTTTATTTATTCTTC-T-TCC
*
21816275 ATTTATATTTAT
1 ATTTTTATTTAT
21816287 GTTTTTTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
20 3 0.10
21 14 0.47
22 13 0.43
ACGTcount: A:0.20, C:0.11, G:0.02, T:0.67
Consensus pattern (21 bp):
ATTTTTATTTATTCTTCTTCC
Found at i:21816810 original size:100 final size:100
Alignment explanation
Indices: 21816637--21816836 Score: 337
Period size: 100 Copynumber: 2.0 Consensus size: 100
21816627 AAAATTATAA
* *
21816637 ATAATATGTAAGATATTTTTGTAGGGTTTTAAACTAATTTTAAATATCGTATAAGATTAAAATCT
1 ATAATATGTAAGATATTTTTGTAGAGTTTCAAACTAATTTTAAATATCGTATAAGATTAAAATCT
21816702 TAAATTAATATGTAAATATTCTTTAGGACTTTATT
66 TAAATTAATATGTAAATATTCTTTAGGACTTTATT
* * * **
21816737 ATAATATGTAAGATATTTTTGTATAGTTTCAAACTAATTTTATATATCGTATAGGATTAGTATCT
1 ATAATATGTAAGATATTTTTGTAGAGTTTCAAACTAATTTTAAATATCGTATAAGATTAAAATCT
21816802 TAAATTAATATGTAAATATTCTTTAGGACTTTATT
66 TAAATTAATATGTAAATATTCTTTAGGACTTTATT
21816837 TAAGATTAAA
Statistics
Matches: 93, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 93 1.00
ACGTcount: A:0.38, C:0.06, G:0.11, T:0.46
Consensus pattern (100 bp):
ATAATATGTAAGATATTTTTGTAGAGTTTCAAACTAATTTTAAATATCGTATAAGATTAAAATCT
TAAATTAATATGTAAATATTCTTTAGGACTTTATT
Found at i:21818722 original size:45 final size:45
Alignment explanation
Indices: 21818666--21818760 Score: 154
Period size: 45 Copynumber: 2.1 Consensus size: 45
21818656 TACTATGTGA
* * *
21818666 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTAAATCC
*
21818711 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTAAATCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTAAATCC
21818756 ACCGA
1 ACCGA
21818761 GTATCTGTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTAAATCC
Found at i:21826667 original size:50 final size:50
Alignment explanation
Indices: 21826587--21826878 Score: 320
Period size: 50 Copynumber: 5.9 Consensus size: 50
21826577 GTTTGGGTAA
* * *
21826587 AGAGATCCCATGTAAAACCATGTCTGGGACATGGCGTTGGCATCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCATCGAGATG
*
21826637 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCATCGAGATG
* * *
21826687 AGAGGTCCCATGTAAGACCATGTTTGGGGCATGGCGTTGGCA-CTGAGAAG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCATC-GAGATG
* ** * * * *
21826737 AGATGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCATCGAGATG
** * * * * *
21826787 AGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGG--TAGTACATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCATCG-AGATG
* ** *
21826836 AAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCAT
21826879 GTTATTATCA
Statistics
Matches: 205, Mismatches: 32, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
48 1 0.00
49 39 0.19
50 163 0.80
51 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCATCGAGATG
Found at i:21828230 original size:119 final size:119
Alignment explanation
Indices: 21828082--21828320 Score: 478
Period size: 119 Copynumber: 2.0 Consensus size: 119
21828072 TATCATAAAT
21828082 AGTGAGATAAATTTTAAAAGTAAATTTTTATGCCCCGAACTAATAAGTTAAGTAAAGTAATGCCT
1 AGTGAGATAAATTTTAAAAGTAAATTTTTATGCCCCGAACTAATAAGTTAAGTAAAGTAATGCCT
21828147 CGAGCTCGACTTCGGCTACGGTCTCGGGTAAGGGGTGTTACAGACTCAAGGTTA
66 CGAGCTCGACTTCGGCTACGGTCTCGGGTAAGGGGTGTTACAGACTCAAGGTTA
21828201 AGTGAGATAAATTTTAAAAGTAAATTTTTATGCCCCGAACTAATAAGTTAAGTAAAGTAATGCCT
1 AGTGAGATAAATTTTAAAAGTAAATTTTTATGCCCCGAACTAATAAGTTAAGTAAAGTAATGCCT
21828266 CGAGCTCGACTTCGGCTACGGTCTCGGGTAAGGGGTGTTACAGACTCAAGGTTA
66 CGAGCTCGACTTCGGCTACGGTCTCGGGTAAGGGGTGTTACAGACTCAAGGTTA
21828320 A
1 A
21828321 TTTAGGCCTT
Statistics
Matches: 120, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
119 120 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.28
Consensus pattern (119 bp):
AGTGAGATAAATTTTAAAAGTAAATTTTTATGCCCCGAACTAATAAGTTAAGTAAAGTAATGCCT
CGAGCTCGACTTCGGCTACGGTCTCGGGTAAGGGGTGTTACAGACTCAAGGTTA
Found at i:21837287 original size:49 final size:49
Alignment explanation
Indices: 21837225--21837325 Score: 166
Period size: 49 Copynumber: 2.1 Consensus size: 49
21837215 CTAATCATGC
* * *
21837225 TATACAATGCTAAACTTGGTCTTCCACTGTCTACACTGTTATCACTATT
1 TATACAATCCTAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATT
*
21837274 TATACATTCCTAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATT
1 TATACAATCCTAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATT
21837323 TAT
1 TAT
21837326 CCCTTCTAGA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.27, C:0.26, G:0.07, T:0.41
Consensus pattern (49 bp):
TATACAATCCTAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATT
Found at i:21837740 original size:30 final size:30
Alignment explanation
Indices: 21837701--21837768 Score: 118
Period size: 30 Copynumber: 2.3 Consensus size: 30
21837691 TGACTTGGGT
*
21837701 CACACGCCCATGTGTGTTGCTCGTGTGTGA
1 CACACGCCCATGTGTGTTGCCCGTGTGTGA
*
21837731 CACATGCCCATGTGTGTTGCCCGTGTGTGA
1 CACACGCCCATGTGTGTTGCCCGTGTGTGA
21837761 CACACGCC
1 CACACGCC
21837769 TGTGTGGCCA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.15, C:0.31, G:0.28, T:0.26
Consensus pattern (30 bp):
CACACGCCCATGTGTGTTGCCCGTGTGTGA
Found at i:21861483 original size:6 final size:6
Alignment explanation
Indices: 21861469--21861502 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
21861459 AAAATGGATT
* *
21861469 ATTTCC ATTTTC ATTTCC ATTTCC ATTTCT ATTT
1 ATTTCC ATTTCC ATTTCC ATTTCC ATTTCC ATTT
21861503 TTGGAAACCT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.18, C:0.24, G:0.00, T:0.59
Consensus pattern (6 bp):
ATTTCC
Found at i:21865271 original size:14 final size:14
Alignment explanation
Indices: 21865252--21865283 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
21865242 AATGATTAGC
21865252 TCTTATCTTTAAGA
1 TCTTATCTTTAAGA
21865266 TCTTATCTTTAAGA
1 TCTTATCTTTAAGA
21865280 TCTT
1 TCTT
21865284 TTATCTCCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.25, C:0.16, G:0.06, T:0.53
Consensus pattern (14 bp):
TCTTATCTTTAAGA
Found at i:21884835 original size:38 final size:37
Alignment explanation
Indices: 21884790--21884888 Score: 135
Period size: 38 Copynumber: 2.6 Consensus size: 37
21884780 GAAATCTTTG
*
21884790 TTATAATTATTGTAATTATAATTTAGGATCAAATATTA
1 TTATAATTATTGTAATTATAATTTAGG-TCAAACATTA
* * *
21884828 TTATAATTACTGTAATTGTAATTTTTGGTCAAACATTA
1 TTATAATTATTGTAATTATAA-TTTAGGTCAAACATTA
*
21884866 TTATAATTATGGTAATTATAATT
1 TTATAATTATTGTAATTATAATT
21884889 ATTATATTCG
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
37 2 0.04
38 46 0.87
39 5 0.09
ACGTcount: A:0.38, C:0.04, G:0.09, T:0.48
Consensus pattern (37 bp):
TTATAATTATTGTAATTATAATTTAGGTCAAACATTA
Found at i:21890449 original size:82 final size:83
Alignment explanation
Indices: 21890342--21890508 Score: 327
Period size: 82 Copynumber: 2.0 Consensus size: 83
21890332 TAAAATAGGC
21890342 TAGGATTCACTAGGTTATAAAATGCAATTTACTAAACTGAAAATGCTAAAATGTATACTAAAGAT
1 TAGGATTCACTAGGTTATAAAATGCAATTTACTAAACTGAAAATGCTAAAATGTATACTAAAGAT
21890407 AACTAAATGGGAACAAAT
66 AACTAAATGGGAACAAAT
21890425 TAGGATTCAC-AGGTTATAAAATGCAATTTACTAAACTGAAAATGCTAAAATGTATACTAAAGAT
1 TAGGATTCACTAGGTTATAAAATGCAATTTACTAAACTGAAAATGCTAAAATGTATACTAAAGAT
21890489 AACTAAATGGGAACAAAT
66 AACTAAATGGGAACAAAT
21890507 TA
1 TA
21890509 ACCAATAAGT
Statistics
Matches: 84, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
82 74 0.88
83 10 0.12
ACGTcount: A:0.47, C:0.11, G:0.14, T:0.28
Consensus pattern (83 bp):
TAGGATTCACTAGGTTATAAAATGCAATTTACTAAACTGAAAATGCTAAAATGTATACTAAAGAT
AACTAAATGGGAACAAAT
Found at i:21903716 original size:27 final size:27
Alignment explanation
Indices: 21903686--21903744 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 27
21903676 CACAGCTCTC
21903686 GTGAGCACACCCATATTCACAACTCGT
1 GTGAGCACACCCATATTCACAACTCGT
** *
21903713 GTGAG--CATTCATATTCACAACTTGT
1 GTGAGCACACCCATATTCACAACTCGT
21903738 GTGAGCA
1 GTGAGCA
21903745 TTCATATTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
25 22 0.81
27 5 0.19
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (27 bp):
GTGAGCACACCCATATTCACAACTCGT
Found at i:21903767 original size:25 final size:25
Alignment explanation
Indices: 21903697--21903754 Score: 107
Period size: 25 Copynumber: 2.3 Consensus size: 25
21903687 TGAGCACACC
21903697 CATATTCACAACTCGTGTGAGCATT
1 CATATTCACAACTCGTGTGAGCATT
*
21903722 CATATTCACAACTTGTGTGAGCATT
1 CATATTCACAACTCGTGTGAGCATT
21903747 CATATTCA
1 CATATTCA
21903755 TAGCTCATGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.34
Consensus pattern (25 bp):
CATATTCACAACTCGTGTGAGCATT
Found at i:21906085 original size:12 final size:12
Alignment explanation
Indices: 21906068--21906100 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
21906058 ATCGAGGATG
21906068 GAGGTTGTATGT
1 GAGGTTGTATGT
21906080 GAGGTTGTATGT
1 GAGGTTGTATGT
21906092 GAGGTTGTA
1 GAGGTTGTA
21906101 GAGCTAGAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.18, C:0.00, G:0.42, T:0.39
Consensus pattern (12 bp):
GAGGTTGTATGT
Found at i:21920681 original size:10 final size:10
Alignment explanation
Indices: 21920653--21920684 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
21920643 TTCTTCTTCT
*
21920653 TCTCTCTCTC
1 TCTCTCTCAC
21920663 TCTCTCTCAC
1 TCTCTCTCAC
21920673 TCTCTCTCAC
1 TCTCTCTCAC
21920683 TC
1 TC
21920685 GATTTTACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.06, C:0.50, G:0.00, T:0.44
Consensus pattern (10 bp):
TCTCTCTCAC
Found at i:21921620 original size:3 final size:3
Alignment explanation
Indices: 21921612--21921645 Score: 59
Period size: 3 Copynumber: 11.0 Consensus size: 3
21921602 GCAGCCTTGT
21921612 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC -TTC TTC
21921646 CTCTCTTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:21929895 original size:21 final size:22
Alignment explanation
Indices: 21929853--21929895 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
21929843 AAACCACAAA
* *
21929853 ATATAATTTTAATAACTTTAAT
1 ATATAATTTTAATAAATCTAAT
*
21929875 ATATATTTTTAA-AAATCTAAT
1 ATATAATTTTAATAAATCTAAT
21929896 GGTACCCTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.49
Consensus pattern (22 bp):
ATATAATTTTAATAAATCTAAT
Found at i:21930878 original size:30 final size:30
Alignment explanation
Indices: 21930821--21930883 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
21930811 AAATATGGGC
* * *
21930821 TTATCTGGATACAAATCAAAGGGTAAGGGT
1 TTATCTGGATACAAATCAAAAGATAAGGCT
* *
21930851 TTATTTGGATACAAATTAAAAGATAAGGCT
1 TTATCTGGATACAAATCAAAAGATAAGGCT
21930881 TTA
1 TTA
21930884 AGAAAACTGA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.32
Consensus pattern (30 bp):
TTATCTGGATACAAATCAAAAGATAAGGCT
Found at i:21931342 original size:29 final size:29
Alignment explanation
Indices: 21931300--21931357 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
21931290 TTCATTTTCG
21931300 TTGGAAACAAGTACAAATAGTTAATTTAA
1 TTGGAAACAAGTACAAATAGTTAATTTAA
21931329 TTGGAAACAAGTACAAATAGTTAATTTAA
1 TTGGAAACAAGTACAAATAGTTAATTTAA
21931358 ATTTCCCAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.48, C:0.07, G:0.14, T:0.31
Consensus pattern (29 bp):
TTGGAAACAAGTACAAATAGTTAATTTAA
Found at i:21939735 original size:26 final size:26
Alignment explanation
Indices: 21939671--21939727 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
21939661 AAGAAGAAAG
* *
21939671 AAAATAAAAAAA-ATAAAATCTAATCT
1 AAAA-AAAAAAAGAGAAAACCTAATCT
21939697 AAAAAAAAAAAGAGAAAACCTAATCT
1 AAAAAAAAAAAGAGAAAACCTAATCT
21939723 AAAAA
1 AAAAA
21939728 TGAAAAGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 7 0.25
26 21 0.75
ACGTcount: A:0.72, C:0.09, G:0.04, T:0.16
Consensus pattern (26 bp):
AAAAAAAAAAAGAGAAAACCTAATCT
Found at i:21941487 original size:6 final size:6
Alignment explanation
Indices: 21941476--21941502 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
21941466 ATTTTGCAAA
21941476 AATATG AATATG AATATG AATATG AAT
1 AATATG AATATG AATATG AATATG AAT
21941503 TTGGATTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.15, T:0.33
Consensus pattern (6 bp):
AATATG
Found at i:21941799 original size:30 final size:30
Alignment explanation
Indices: 21941761--21941953 Score: 162
Period size: 30 Copynumber: 6.5 Consensus size: 30
21941751 TCATCAACCA
* *
21941761 ATGAAAAGGGATGGCTTCGGCTATCAAAAT
1 ATGAAAAGGGATGGCTTCGACTATCAAATT
* * * **
21941791 ATGGAAAGGGATAGCTTCGGCTATTGAATT
1 ATGAAAAGGGATGGCTTCGACTATCAAATT
* *
21941821 TTGAAAAGGGATGG-TGACGACTATCAACA--
1 ATGAAAAGGGATGGCT-TCGACTATCAA-ATT
* **
21941850 ATGAAAAGGGATGG-TGAT-GACCATCGGATT
1 ATGAAAAGGGATGGCT--TCGACTATCAAATT
* * *
21941880 ATGAAAATGGATGGCTTCGACAATCGAATT
1 ATGAAAAGGGATGGCTTCGACTATCAAATT
*
21941910 ATGAAAAGGGATAGCTTCGACTATCAAATT
1 ATGAAAAGGGATGGCTTCGACTATCAAATT
*
21941940 ATGGAAAGGGATGG
1 ATGAAAAGGGATGG
21941954 TGGTGACCAT
Statistics
Matches: 129, Mismatches: 27, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
28 1 0.01
29 22 0.17
30 104 0.81
31 2 0.02
ACGTcount: A:0.36, C:0.11, G:0.28, T:0.24
Consensus pattern (30 bp):
ATGAAAAGGGATGGCTTCGACTATCAAATT
Found at i:21942091 original size:128 final size:128
Alignment explanation
Indices: 21941843--21942091 Score: 311
Period size: 128 Copynumber: 1.9 Consensus size: 128
21941833 GGTGACGACT
* * * * *
21941843 ATCAACAATGAAAAGGGATGGTGATGACCATCGGATTATGAAAATGGATGGCTTCGACAATCGAA
1 ATCAACAATGAAAAGGGATGGTGACGACCATCGAATTATGAAAAGGGATGGCTTCAACAATCAAA
** * * * ****
21941908 TTATGAAAAGGGATAGCTTCGACTATCAAATTATGGAAAGGGATGGTGGTGACCATCACCACC
66 ACATGAAAAGGGATAGCTTCGACTATCAAACTATGAAAAAGGATGGTAACAACCATCACCACC
**
21941971 ATCAACAATGAAAAGGGATGGTGACGACCATCGAATTATGAAAAGGGATGGCTTCAAGTATCAAA
1 ATCAACAATGAAAAGGGATGGTGACGACCATCGAATTATGAAAAGGGATGGCTTCAACAATCAAA
* * *
21942036 ACATGGAAAGGGATAGCTTCGGCTATCGAACTATGAAAAAAGG-TGGTAACAACCAT
66 ACATGAAAAGGGATAGCTTCGACTATCAAACTATG-AAAAAGGATGGTAACAACCAT
21942092 TGTGATTTTA
Statistics
Matches: 101, Mismatches: 19, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
128 96 0.95
129 5 0.05
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.21
Consensus pattern (128 bp):
ATCAACAATGAAAAGGGATGGTGACGACCATCGAATTATGAAAAGGGATGGCTTCAACAATCAAA
ACATGAAAAGGGATAGCTTCGACTATCAAACTATGAAAAAGGATGGTAACAACCATCACCACC
Found at i:21948672 original size:306 final size:306
Alignment explanation
Indices: 21948279--21948833 Score: 923
Period size: 306 Copynumber: 1.8 Consensus size: 306
21948269 TAATAGCCCG
* * * *
21948279 TTTTAAGTGAAATTAGAATAGTGGTTTTGGGACCAGAAATCTGACGTGAAAATATTTATTTTATT
1 TTTTAAGTGAAATCAGAACAGTGATTTTGGGACCACAAATCTGACGTGAAAATATTTATTTTATT
*
21948344 ATTATTTTAATGTCTACAGCATGTTAGTATCACCGTATAAAAATTTCGTTAAGAAATTTTACCAT
66 ATTATTTTAATGTCTACAGCATGTTAGTATCACCGTATAAAAATTTCATTAAGAAATTTTACCAT
21948409 TTGCATGCTTAATTTGATAAAAAGGACTGAATTGCAAAAGATACAAAATTACAGTTCTGTAAATT
131 TTGCATGCTTAATTTGATAAAAAGGACTGAATTGCAAAAGATACAAAATTACAGTTCTGTAAATT
* * * *
21948474 AAAGGCACTAAATGGCTATATAATTAATGTGTAAGAGT-CTTTATGTGGTAATTAGACCATTTTT
196 AAAGACACTAAATGGATATAGAATTAATGTCTAAGAGTGC-TTATGTGGTAATTAGACCATTTTT
21948538 TGTTTAAGTGGAAAAATATGGCCATTAAATTAAGTTGTAACAACCTA
260 TGTTTAAGTGGAAAAATATGGCCATTAAATTAAGTTGTAACAACCTA
*
21948585 TTTTTAGTGAAATCAGAACAGTGATTTTGGGACCACAAATCTGACGTGAAAATATTTATTTTATT
1 TTTTAAGTGAAATCAGAACAGTGATTTTGGGACCACAAATCTGACGTGAAAATATTTATTTTATT
* * *
21948650 ATTATTTTAATGTCTGCAGCATGTTAGTATCACTGTATAAAAATTTTATTAAGAAATTTTACCAT
66 ATTATTTTAATGTCTACAGCATGTTAGTATCACCGTATAAAAATTTCATTAAGAAATTTTACCAT
* * * * *
21948715 TTGCATGCTTAATTTGATAAAAAGGAGTGAATTGCAAAAGGTACAAAATTAGAGTTTTTTAAATT
131 TTGCATGCTTAATTTGATAAAAAGGACTGAATTGCAAAAGATACAAAATTACAGTTCTGTAAATT
*
21948780 AACGACACTAAATGGATATAGAATTAATGTCTAAGAGTGCTTATGTGGTAATTA
196 AAAGACACTAAATGGATATAGAATTAATGTCTAAGAGTGCTTATGTGGTAATTA
21948834 TTGTTTATTT
Statistics
Matches: 229, Mismatches: 19, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
306 228 1.00
307 1 0.00
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (306 bp):
TTTTAAGTGAAATCAGAACAGTGATTTTGGGACCACAAATCTGACGTGAAAATATTTATTTTATT
ATTATTTTAATGTCTACAGCATGTTAGTATCACCGTATAAAAATTTCATTAAGAAATTTTACCAT
TTGCATGCTTAATTTGATAAAAAGGACTGAATTGCAAAAGATACAAAATTACAGTTCTGTAAATT
AAAGACACTAAATGGATATAGAATTAATGTCTAAGAGTGCTTATGTGGTAATTAGACCATTTTTT
GTTTAAGTGGAAAAATATGGCCATTAAATTAAGTTGTAACAACCTA
Found at i:21949882 original size:30 final size:31
Alignment explanation
Indices: 21949848--21950073 Score: 111
Period size: 30 Copynumber: 7.5 Consensus size: 31
21949838 TTTTACAAAG
* *
21949848 GGATGGCTTTGGCTAT-AAAATTATGAAAAT
1 GGATGGCTTCGACTATCAAAATTATGAAAAT
21949878 GGATGGCTTCGACTATCAAAATTATGAAAA-
1 GGATGGCTTCGACTATCAAAATTATGAAAAT
* * *
21949908 GATATAGCTTC-AGCTGTC-AAATTATGAAAA-
1 G-GATGGCTTCGA-CTATCAAAATTATGAAAAT
** * *
21949938 GGAACAGCTTCGGC-ATC-AAATTATGAAAAA
1 GG-ATGGCTTCGACTATCAAAATTATGAAAAT
* * *
21949968 GGATGG-TGACGACCATCAACAA-T-T-AAAAG
1 GGATGGCT-TCGACTATCAA-AATTATGAAAAT
* * * * *
21949997 GGATGG-TGACGACCATC-GAATTATTAAAAG
1 GGATGGCT-TCGACTATCAAAATTATGAAAAT
* *
21950027 GGATGGCTTCGGCTATCAAAA-CATGAAAAT
1 GGATGGCTTCGACTATCAAAATTATGAAAAT
* *
21950057 GGATAGCTTCGGCTATC
1 GGATGGCTTCGACTATC
21950074 GAACTATGAA
Statistics
Matches: 158, Mismatches: 23, Indels: 30
0.75 0.11 0.14
Matches are distributed among these distances:
27 2 0.01
28 2 0.01
29 41 0.26
30 82 0.52
31 29 0.18
32 2 0.01
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.25
Consensus pattern (31 bp):
GGATGGCTTCGACTATCAAAATTATGAAAAT
Found at i:21950000 original size:29 final size:30
Alignment explanation
Indices: 21949963--21950032 Score: 106
Period size: 29 Copynumber: 2.4 Consensus size: 30
21949953 TCAAATTATG
*
21949963 AAAAAGGATGGTGACGACCATC-AACAATT
1 AAAAGGGATGGTGACGACCATCGAACAATT
**
21949992 AAAAGGGATGGTGACGACCATCGAATTATT
1 AAAAGGGATGGTGACGACCATCGAACAATT
21950022 AAAAGGGATGG
1 AAAAGGGATGG
21950033 CTTCGGCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
29 21 0.57
30 16 0.43
ACGTcount: A:0.41, C:0.13, G:0.27, T:0.19
Consensus pattern (30 bp):
AAAAGGGATGGTGACGACCATCGAACAATT
Found at i:21950029 original size:179 final size:179
Alignment explanation
Indices: 21949721--21950087 Score: 470
Period size: 179 Copynumber: 2.1 Consensus size: 179
21949711 TCATCAACCA
* * * * * *
21949721 ATGAAAAGAGATGGCTTCAGGTATCAAAATATGGAAAGGGATAGCTTCAGCTATCGAATTATGAA
1 ATGAAAAGAGATAGCTTCAGCTATCAAAATATGAAAAGGAACAGCTTCAGCTATCAAATTATGAA
* * * * *
21949786 AAGGGATGGTCTCGGCCATGAACAATGAAAAGAGATGGTGACGACCATTGAATTTTACAAAGGGA
66 AAAGGATGGTCACGACCATCAACAATGAAAAGAGATGGTGACGACCATCGAATTTTACAAAGGGA
* * * *
21949851 TGGCTTTGGCTAT-AAAATTATGAAAATGGATGGCTTCGACTATCAAAATT
131 TGGCTTCGGCTATCAAAA-CATGAAAATGGATAGCTTCGACTATC-AAACT
* * * *
21949901 ATGAAAAGATATAGCTTCAGCTGTCAAATTATGAAAAGGAACAGCTTCGGC-ATCAAATTATGAA
1 ATGAAAAGAGATAGCTTCAGCTATCAAAATATGAAAAGGAACAGCTTCAGCTATCAAATTATGAA
* * *
21949965 AAAGGATGGTGACGACCATCAACAATTAAAAGGGATGGTGACGACCATCGAATTATTA-AAAGGG
66 AAAGGATGGTCACGACCATCAACAATGAAAAGAGATGGTGACGACCATCGAATT-TTACAAAGGG
* *
21950029 ATGGCTTCGGCTATCAAAACATGAAAATGGATAGCTTCGGCTATCGAACT
130 ATGGCTTCGGCTATCAAAACATGAAAATGGATAGCTTCGACTATCAAACT
21950079 ATGAAAAGA
1 ATGAAAAGA
21950088 AGTGGTAACA
Statistics
Matches: 161, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
178 12 0.07
179 100 0.62
180 49 0.30
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.24
Consensus pattern (179 bp):
ATGAAAAGAGATAGCTTCAGCTATCAAAATATGAAAAGGAACAGCTTCAGCTATCAAATTATGAA
AAAGGATGGTCACGACCATCAACAATGAAAAGAGATGGTGACGACCATCGAATTTTACAAAGGGA
TGGCTTCGGCTATCAAAACATGAAAATGGATAGCTTCGACTATCAAACT
Found at i:21950083 original size:30 final size:30
Alignment explanation
Indices: 21949721--21950086 Score: 104
Period size: 30 Copynumber: 12.3 Consensus size: 30
21949711 TCATCAACCA
* * * *
21949721 ATGAAAAGAGATGGCTTCAGG-TATCAAAAT
1 ATGAAAAGGGATAGCTTC-GGCTATCGAACT
* * *
21949751 ATGGAAAGGGATAGCTTCAGCTATCGAATT
1 ATGAAAAGGGATAGCTTCGGCTATCGAACT
* * *
21949781 ATGAAAAGGGAT-GGTCTCGGCCAT-GAACA
1 ATGAAAAGGGATAGCT-TCGGCTATCGAACT
* * * * * *
21949810 ATGAAAAGAGAT-GGTGACGACCATTGAA-T
1 ATGAAAAGGGATAGCT-TCGGCTATCGAACT
* * * * ** *
21949839 TTTACAAAGGGATGGCTTTGGCTATAAAATT
1 ATGA-AAAGGGATAGCTTCGGCTATCGAACT
* * * * *
21949870 ATGAAAATGGATGGCTTCGACTATCAAAATT
1 ATGAAAAGGGATAGCTTCGGCTATC-GAACT
** * * * *
21949901 ATGAAAAGATATAGCTTCAGCTGTCAAATT
1 ATGAAAAGGGATAGCTTCGGCTATCGAACT
* * * *
21949931 ATGAAAAGGAACAGCTTCGGC-ATCAAATT
1 ATGAAAAGGGATAGCTTCGGCTATCGAACT
* * * * * *
21949960 ATGAAAAAGGAT-GGTGACGACCATC-AACA
1 ATGAAAAGGGATAGCT-TCGGCTATCGAACT
* * * * * *
21949989 ATTAAAAGGGAT-GGTGACGACCATCGAATT
1 ATGAAAAGGGATAGCT-TCGGCTATCGAACT
* * *
21950019 ATTAAAAGGGATGGCTTCGGCTATCAAAAC-
1 ATGAAAAGGGATAGCTTCGGCTATC-GAACT
*
21950049 ATGAAAATGGATAGCTTCGGCTATCGAACT
1 ATGAAAAGGGATAGCTTCGGCTATCGAACT
21950079 ATGAAAAG
1 ATGAAAAG
21950087 AAGTGGTAAC
Statistics
Matches: 255, Mismatches: 68, Indels: 26
0.73 0.19 0.07
Matches are distributed among these distances:
28 2 0.01
29 75 0.29
30 146 0.57
31 32 0.13
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.24
Consensus pattern (30 bp):
ATGAAAAGGGATAGCTTCGGCTATCGAACT
Found at i:21951311 original size:20 final size:20
Alignment explanation
Indices: 21951274--21951314 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
21951264 CTATAGTTTA
*
21951274 AAAATTTTAATCTTTTTCTG
1 AAAATTTTAATCTGTTTCTG
* *
21951294 AAAATTTTTATGTGTTTCTG
1 AAAATTTTAATCTGTTTCTG
21951314 A
1 A
21951315 TTTGTTTCTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.07, G:0.10, T:0.54
Consensus pattern (20 bp):
AAAATTTTAATCTGTTTCTG
Found at i:21955507 original size:27 final size:28
Alignment explanation
Indices: 21955469--21955594 Score: 102
Period size: 27 Copynumber: 4.6 Consensus size: 28
21955459 GGCAACCATT
*
21955469 CAGAGT-TCGCCATAAAGGCT-A-TCTATA
1 CAGAGTAT-GCCACAAAGGCTGATTC-ATA
* *
21955496 CAGAGTATGCCA-AAAAGATGATTCATA
1 CAGAGTATGCCACAAAGGCTGATTCATA
*
21955523 CAGAGTATGCCGCAAAGG-TGATTCATA
1 CAGAGTATGCCACAAAGGCTGATTCATA
* * * *
21955550 CAGACTACGCCACAAAGGC-GATCCATT
1 CAGAGTATGCCACAAAGGCTGATTCATA
**
21955577 CAGAGTATGTTACAAAGG
1 CAGAGTATGCCACAAAGG
21955595 ATGACAGGAT
Statistics
Matches: 81, Mismatches: 13, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
26 5 0.06
27 69 0.85
28 7 0.09
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (28 bp):
CAGAGTATGCCACAAAGGCTGATTCATA
Found at i:21957104 original size:33 final size:33
Alignment explanation
Indices: 21957062--21957392 Score: 662
Period size: 33 Copynumber: 10.0 Consensus size: 33
21957052 TGTAAAGCTC
21957062 TTTTCTTATATCCTTCAAATACTTCAACTGATT
1 TTTTCTTATATCCTTCAAATACTTCAACTGATT
21957095 TTTTCTTATATCCTTCAAATACTTCAACTGATT
1 TTTTCTTATATCCTTCAAATACTTCAACTGATT
21957128 TTTTCTTATATCCTTCAAATACTTCAACTGATT
1 TTTTCTTATATCCTTCAAATACTTCAACTGATT
21957161 TTTTCTTATATCCTTCAAATACTTCAACTGATT
1 TTTTCTTATATCCTTCAAATACTTCAACTGATT
21957194 TTTTCTTATATCCTTCAAATACTTCAACTGATT
1 TTTTCTTATATCCTTCAAATACTTCAACTGATT
21957227 TTTTCTTATATCCTTCAAATACTTCAACTGATT
1 TTTTCTTATATCCTTCAAATACTTCAACTGATT
21957260 TTTTCTTATATCCTTCAAATACTTCAACTGATT
1 TTTTCTTATATCCTTCAAATACTTCAACTGATT
21957293 TTTTCTTATATCCTTCAAATACTTCAACTGATT
1 TTTTCTTATATCCTTCAAATACTTCAACTGATT
21957326 TTTTCTTATATCCTTCAAATACTTCAACTGATT
1 TTTTCTTATATCCTTCAAATACTTCAACTGATT
21957359 TTTTCTTATATCCTTCAAATACTTCAACTGATT
1 TTTTCTTATATCCTTCAAATACTTCAACTGATT
21957392 T
1 T
21957393 CTCCATTTAT
Statistics
Matches: 298, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 298 1.00
ACGTcount: A:0.27, C:0.21, G:0.03, T:0.49
Consensus pattern (33 bp):
TTTTCTTATATCCTTCAAATACTTCAACTGATT
Found at i:21974194 original size:105 final size:106
Alignment explanation
Indices: 21974056--21974258 Score: 338
Period size: 105 Copynumber: 1.9 Consensus size: 106
21974046 ATGGATTAAG
* *
21974056 ATTTAAGAGGATTTTTGGCTATTTGGTCAAACGAAAAAATCGAAACCCAGCACATTAGGGCACGT
1 ATTTAAGAGGATATTTGGCTATTTGGTCAAACGAAAAAATCGAAACCCAACACATTAGGGCACGT
21974121 TTCCTCGAAATT-CCAAACGCAAAATATTGCCTTACTCTGAA
66 TTCCTCG-AATTCCCAAACGCAAAATATTGCCTTACTCTGAA
*
21974162 ATTTAA-AGGATATTTGGCTATTTGGTCGAACGAAAAAATCGAAACCCAACACATTAGGGCACGT
1 ATTTAAGAGGATATTTGGCTATTTGGTCAAACGAAAAAATCGAAACCCAACACATTAGGGCACGT
* *
21974226 TTTCTCGAATTCCCAAATGCAAAATATTGCCTT
66 TTCCTCGAATTCCCAAACGCAAAATATTGCCTT
21974259 TATTATTTTT
Statistics
Matches: 91, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
104 4 0.04
105 81 0.89
106 6 0.07
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (106 bp):
ATTTAAGAGGATATTTGGCTATTTGGTCAAACGAAAAAATCGAAACCCAACACATTAGGGCACGT
TTCCTCGAATTCCCAAACGCAAAATATTGCCTTACTCTGAA
Found at i:21975301 original size:3 final size:3
Alignment explanation
Indices: 21975295--21975342 Score: 71
Period size: 3 Copynumber: 16.3 Consensus size: 3
21975285 TAATGACAAC
* *
21975295 AAT AAT AAT AAT AAT AAT AAT AAT AGT AAT AAT AAT AA- AAT AAC AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
21975342 A
1 A
21975343 GAAAAGGATT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
2 2 0.05
3 38 0.95
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:21977175 original size:4 final size:4
Alignment explanation
Indices: 21977166--21977190 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
21977156 TAGATCATAT
21977166 TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA T
21977191 GTTGTTAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:21989302 original size:57 final size:56
Alignment explanation
Indices: 21989201--21989316 Score: 153
Period size: 57 Copynumber: 2.0 Consensus size: 56
21989191 ATCGAAATGG
* * *
21989201 TGAAAATGGAGAAATGCGAAACATTTGAAAATTATTATGGTTTCTCCAAAATAAAAA
1 TGAAAATGGAGAAAT-CGAAAAATTTGAAAATGATAATGGTTTCTCCAAAATAAAAA
* *
21989258 TGAAAATGGAGAAAT-GAAATAATTTGGAAATGATAATGGTTTTCTCCAAAATGAAAA
1 TGAAAATGGAGAAATCGAAA-AATTTGAAAATGATAATGG-TTTCTCCAAAATAAAAA
21989315 TG
1 TG
21989317 GAGAAATAGA
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
55 4 0.08
56 15 0.29
57 33 0.63
ACGTcount: A:0.47, C:0.07, G:0.18, T:0.28
Consensus pattern (56 bp):
TGAAAATGGAGAAATCGAAAAATTTGAAAATGATAATGGTTTCTCCAAAATAAAAA
Found at i:21989349 original size:51 final size:51
Alignment explanation
Indices: 21989201--21989367 Score: 135
Period size: 51 Copynumber: 3.2 Consensus size: 51
21989191 ATCGAAATGG
* * * *
21989201 TGAAAATGGAGAAATGCGAAAC-ATTTGAAAATTATTATGGTTTCTCCAAAATAAAAA
1 TGAAAATGGAGAAAT--GAAACAATTTGGAAATGATAATGGTTTC-CC---CT-AAAA
* *
21989258 TGAAAATGGAGAAATGAAATAATTTGGAAATGATAATGGTTTTCTCC-AAAA
1 TGAAAATGGAGAAATGAAACAATTTGGAAATGATAATGG-TTTCCCCTAAAA
* * *
21989309 TGAAAATGGAGAAAT-AGAACCATTTGGAAATGA-ATGTGGTTTCCCCTAAAC
1 TGAAAATGGAGAAATGA-AACAATTTGGAAATGATA-ATGGTTTCCCCTAAAA
21989360 TGAAAATG
1 TGAAAATG
21989368 AAATTGATCT
Statistics
Matches: 94, Mismatches: 11, Indels: 16
0.78 0.09 0.13
Matches are distributed among these distances:
50 8 0.09
51 47 0.50
55 4 0.04
56 16 0.17
57 19 0.20
ACGTcount: A:0.44, C:0.09, G:0.19, T:0.28
Consensus pattern (51 bp):
TGAAAATGGAGAAATGAAACAATTTGGAAATGATAATGGTTTCCCCTAAAA
Found at i:22009434 original size:16 final size:16
Alignment explanation
Indices: 22009415--22009445 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22009405 CATATTACAT
22009415 AAAAAGAAATACAAAC
1 AAAAAGAAATACAAAC
*
22009431 AAAAAGAAATGCAAA
1 AAAAAGAAATACAAA
22009446 AAATGATGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.10, G:0.10, T:0.06
Consensus pattern (16 bp):
AAAAAGAAATACAAAC
Found at i:22017541 original size:114 final size:114
Alignment explanation
Indices: 22017100--22017859 Score: 521
Period size: 114 Copynumber: 6.7 Consensus size: 114
22017090 GCAAATGATA
* * * * * * * *
22017100 TCGTTTTCTTGGTGAGCTTCAAAGACATTAGTGGTGCTTTA-AGCAAAACGTCGCAAAAGTCAAA
1 TCGTTTTCTTGTTTAGCTTTAGAGACATTAGTGGCGCTTTACA-AAAAACGCCGCAAAAGTCAAG
* * * * *
22017164 AATTAGCGGCGCTTT-TACAAAAGCGCCGCAAAACTGTTAAGCAGACGACG
65 AATTAGCGGCGCTTTCT-CGAAAGCGCCACAAAAGTTTTAAGCAAACGACG
* * * * *
22017214 TCGTTTTC-T-TTTAGGTTTAGAGACATTAGTGGCG-TTTATACAGAAATGCCACAGAATA-TCA
1 TCGTTTTCTTGTTTAGCTTTAGAGACATTAGTGGCGCTTTACA-AAAAACGCCGCA-AA-AGTCA
* * * * * *
22017275 TGAATTAACGGTGCTTTCTCCAAAGCGCCACAAAAGTTTTTATCAAACGACG
63 AGAATTAGCGGCGCTTTCTCGAAAGCGCCACAAAAGTTTTAAGCAAACGACG
* * * * *
22017327 TCGTTTTCTTGTTGAGCTTTAGACACATTAGTGGCGCTTTACAAAAAACGCCGCAGATGTCAATA
1 TCGTTTTCTTGTTTAGCTTTAGAGACATTAGTGGCGCTTTACAAAAAACGCCGCAAAAGTCAAGA
* ** ** * *
22017392 ATTAGCGGCACTTT-AAGGGAGCACCGTA-AAAAGTTTTAAGCAAACGGCG
66 ATTAGCGGCGCTTTCTCGAAAGCGCC--ACAAAAGTTTTAAGCAAACGACG
* *
22017441 TCGTTCTTC-TGTTTAGCTTTAGAGACATTAATGGTGCTTTACAAAAAACGCCGCAAAAGTCAAG
1 TCGTT-TTCTTGTTTAGCTTTAGAGACATTAGTGGCGCTTTACAAAAAACGCCGCAAAAGTCAAG
** * * * *
22017505 CCTTAGCGGCGCTTTCTCGAAAGTGCCACAATAGTTTTAGGCAAACGATG
65 AATTAGCGGCGCTTTCTCGAAAGCGCCACAAAAGTTTTAAGCAAACGACG
* * * * * * *
22017555 ACGTTTTCTTTTTTAGATTTAGAGACATTAGTGGGGCATTCCTAAAAACGCCGCAGAAA-TCAAG
1 TCGTTTTCTTGTTTAGCTTTAGAGACATTAGTGGCGCTTTACAAAAAACGCCGCA-AAAGTCAAG
* * * * **
22017619 AATTAGCGACGCTTTCGC-AATAGCACCGCAAAAGTTTTTAAGCAAACGAAAA
65 AATTAGCGGCGCTTTCTCGAA-AGCGCCACAAAAG-TTTTAAGCAAACG-ACG
* * * * * * * * *
22017671 T-ATTTTATTGTTAAGGTTTAG-GCACATTAGTGGCGTATTTA-TAAAAATGCCACAGAAGTCAA
1 TCGTTTTCTTGTTTAGCTTTAGAG-ACATTAGTGGCG-CTTTACAAAAAACGCCGCAAAAGTCAA
* * * * *
22017733 GATTTAGCGGCGCTTTCTC-AGAAGTGCTGCA-AAAAGATTTATGTC-AACAACG
64 GAATTAGCGGCGCTTTCTCGA-AAGCGC--CACAAAAGTTTTAAG-CAAACGACG
* ** * * *
22017785 TTGTTTT-TATGTGGAGCTTTAGAGAAATTAGTGGCGCTTTACAATAAACACCGCAAAAGTCAAG
1 TCGTTTTCT-TGTTTAGCTTTAGAGACATTAGTGGCGCTTTACAAAAAACGCCGCAAAAGTCAAG
*
22017849 CATTAGCGGCG
65 AATTAGCGGCG
22017860 TTTTTTTTAA
Statistics
Matches: 494, Mismatches: 123, Indels: 57
0.73 0.18 0.08
Matches are distributed among these distances:
111 4 0.01
112 27 0.05
113 64 0.13
114 208 0.42
115 174 0.35
116 16 0.03
117 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.29
Consensus pattern (114 bp):
TCGTTTTCTTGTTTAGCTTTAGAGACATTAGTGGCGCTTTACAAAAAACGCCGCAAAAGTCAAGA
ATTAGCGGCGCTTTCTCGAAAGCGCCACAAAAGTTTTAAGCAAACGACG
Found at i:22018030 original size:39 final size:39
Alignment explanation
Indices: 22017984--22018072 Score: 124
Period size: 39 Copynumber: 2.3 Consensus size: 39
22017974 TTTAAGGGTT
* **
22017984 AAGGTTTAAGGTTTATAGTTTATATATGTTTTATGATTC
1 AAGGTTTAAGGTTTAGAGTTTATATATGTTCCATGATTC
* * *
22018023 AGGGTTTAAGGTTTAGGGTTTATATATGTTCCATGATTT
1 AAGGTTTAAGGTTTAGAGTTTATATATGTTCCATGATTC
22018062 AAGGTTTAAGG
1 AAGGTTTAAGG
22018073 AATATGGGTT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.27, C:0.03, G:0.24, T:0.46
Consensus pattern (39 bp):
AAGGTTTAAGGTTTAGAGTTTATATATGTTCCATGATTC
Found at i:22020585 original size:31 final size:31
Alignment explanation
Indices: 22020547--22020626 Score: 117
Period size: 31 Copynumber: 2.6 Consensus size: 31
22020537 AAGGATTTTA
22020547 ATTGGTTTTTGCAGCTAAGATGGTACCTTCT
1 ATTGGTTTTTGCAGCTAAGATGGTACCTTCT
*
22020578 ATTGGTTTTTGCTA-CTAAGATGGTACCTTTT
1 ATTGGTTTTTGC-AGCTAAGATGGTACCTTCT
* *
22020609 ATTGTTTTTTGCTGCTAA
1 ATTGGTTTTTGCAGCTAA
22020627 ATCAACCATG
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
31 43 0.98
32 1 0.02
ACGTcount: A:0.19, C:0.14, G:0.20, T:0.47
Consensus pattern (31 bp):
ATTGGTTTTTGCAGCTAAGATGGTACCTTCT
Found at i:22021047 original size:16 final size:16
Alignment explanation
Indices: 22021028--22021553 Score: 239
Period size: 16 Copynumber: 32.4 Consensus size: 16
22021018 AATTACAACT
*
22021028 TACATATCTTACATAA
1 TACATAACTTACATAA
22021044 TACATAACTTACATAA
1 TACATAACTTACATAA
*
22021060 TACA-ACACTTACACAA
1 TACATA-ACTTACATAA
* *
22021076 CTTAAATAACTTATATAA
1 --TACATAACTTACATAA
* *
22021094 CTTGCATAACTTATATAA
1 --TACATAACTTACATAA
22021112 TAACATAATAACTTACATAA
1 T-AC---ATAACTTACATAA
* *
22021132 TACATAGCCTACATAA
1 TACATAACTTACATAA
*
22021148 CT-TATAACTTACATAA
1 -TACATAACTTACATAA
22021164 TACATAAC---C-T--
1 TACATAACTTACATAA
* *
22021174 T-CCTAACTTACATTA
1 TACATAACTTACATAA
* *
22021189 TACACAACTTATAT-A
1 TACATAACTTACATAA
*
22021204 -ACTTAA-TTA-ATATTA
1 TACATAACTTACATA--A
*
22021219 TACACAACTTACATAA
1 TACATAACTTACATAA
*
22021235 TACATTACTTACATAA
1 TACATAACTTACATAA
*
22021251 CTTACATAA--TACATTACT
1 --TACATAACTTACA-TA-A
*
22021269 TACATAACTTACATTACT
1 TACATAACTTACA-TA-A
22021287 TACAGT-ACTTACATAA
1 TACA-TAACTTACATAA
22021303 TACATAA--TACATAA
1 TACATAACTTACATAA
*
22021317 CTTACATAACATACA-ATA
1 --TACATAACTTACATA-A
22021335 TACATAACTTACATAACA
1 TACATAACTTACAT-A-A
*
22021353 TACATGA--TACATAA
1 TACATAACTTACATAA
*
22021367 CTTACATAACATACATAA
1 --TACATAACTTACATAA
22021385 TACATAACTTACAT-A
1 TACATAACTTACATAA
*
22021400 -ACATACAATATACATAA
1 TACATA-ACT-TACATAA
* *
22021417 CTTACATAACATACATGA
1 --TACATAACTTACATAA
22021435 TACATAACTTACATAACA
1 TACATAACTTACAT-A-A
*
22021453 TACATAA-TT---TAG
1 TACATAACTTACATAA
22021465 TACATAACTTAC-T--
1 TACATAACTTACATAA
*
22021478 TACATAAATTACATAA
1 TACATAACTTACATAA
*
22021494 TACACAACTTACATAA
1 TACATAACTTACATAA
* * *
22021510 CTTACATAATACATAACTTAG
1 --TACAT-A-AC-TTACATAA
22021531 TACATAACTTACATAA
1 TACATAACTTACATAA
22021547 TACATAA
1 TACATAA
22021554 AAATATAGCA
Statistics
Matches: 399, Mismatches: 50, Indels: 122
0.70 0.09 0.21
Matches are distributed among these distances:
9 5 0.01
10 1 0.00
12 11 0.03
13 19 0.05
14 19 0.05
15 11 0.03
16 187 0.47
17 15 0.04
18 95 0.24
19 11 0.03
20 20 0.05
21 5 0.01
ACGTcount: A:0.47, C:0.20, G:0.01, T:0.32
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:22021056 original size:9 final size:9
Alignment explanation
Indices: 22021024--22021546 Score: 306
Period size: 9 Copynumber: 61.2 Consensus size: 9
22021014 AAATAATTAC
22021024 AACTTACAT
1 AACTTACAT
*
22021033 ATCTTACAT
1 AACTTACAT
22021042 AA--TACAT
1 AACTTACAT
22021049 AACTTACAT
1 AACTTACAT
22021058 AA--TACA-
1 AACTTACAT
*
22021064 ACACTTACAC
1 A-ACTTACAT
*
22021074 AACTTAAAT
1 AACTTACAT
*
22021083 AACTTATAT
1 AACTTACAT
*
22021092 AACTTGCAT
1 AACTTACAT
*
22021101 AACTTATAT
1 AACTTACAT
*
22021110 AA-TAACATAAT
1 AACTTAC---AT
22021121 AACTTACAT
1 AACTTACAT
22021130 AA--TACAT
1 AACTTACAT
* *
22021137 AGCCTACAT
1 AACTTACAT
22021146 AACTT--AT
1 AACTTACAT
22021153 AACTTACAT
1 AACTTACAT
22021162 AA--TACAT
1 AACTTACAT
*
22021169 AACCTT-CCT
1 AA-CTTACAT
22021178 AACTTACAT
1 AACTTACAT
* *
22021187 TA--TACAC
1 AACTTACAT
*
22021194 AACTTATAT
1 AACTTACAT
22021203 AACTTA-ATT
1 AACTTACA-T
* *
22021212 AATATTATACAC
1 -A-ACT-TACAT
22021224 AACTTACAT
1 AACTTACAT
22021233 AA--TACAT
1 AACTTACAT
*
22021240 TACTTACAT
1 AACTTACAT
22021249 AACTTACAT
1 AACTTACAT
22021258 AA--TACAT
1 AACTTACAT
*
22021265 TACTTACAT
1 AACTTACAT
22021274 AACTTACAT
1 AACTTACAT
*
22021283 TACTTACAGT
1 AACTTACA-T
22021293 -ACTTACAT
1 AACTTACAT
22021301 AA--TACAT
1 AACTTACAT
22021308 AA--TACAT
1 AACTTACAT
22021315 AACTTACAT
1 AACTTACAT
*
22021324 AACATAC--
1 AACTTACAT
22021331 AA-TATACAT
1 AACT-TACAT
22021340 AACTTACAT
1 AACTTACAT
*
22021349 AACATACAT
1 AACTTACAT
*
22021358 GA--TACAT
1 AACTTACAT
22021365 AACTTACAT
1 AACTTACAT
*
22021374 AACATACAT
1 AACTTACAT
22021383 AA--TACAT
1 AACTTACAT
22021390 AACTTACAT
1 AACTTACAT
*
22021399 AACATAC--
1 AACTTACAT
22021406 AA-TATACAT
1 AACT-TACAT
22021415 AACTTACAT
1 AACTTACAT
*
22021424 AACATACAT
1 AACTTACAT
*
22021433 GA--TACAT
1 AACTTACAT
22021440 AACTTACAT
1 AACTTACAT
*
22021449 AACATACAT
1 AACTTACAT
* *
22021458 AATTTA-GT
1 AACTTACAT
*
22021466 -ACATA-ACT
1 AACTTACA-T
*
22021474 TACTTACAT
1 AACTTACAT
*
22021483 AAATTACAT
1 AACTTACAT
*
22021492 AA--TACAC
1 AACTTACAT
22021499 AACTTACAT
1 AACTTACAT
22021508 AACTTACAT
1 AACTTACAT
22021517 AA--TACAT
1 AACTTACAT
22021524 AACTTAGTACAT
1 AAC-T--TACAT
22021536 AACTTACAT
1 AACTTACAT
22021545 AA
1 AA
22021547 TACATAAAAA
Statistics
Matches: 403, Mismatches: 54, Indels: 114
0.71 0.09 0.20
Matches are distributed among these distances:
6 1 0.00
7 108 0.27
8 9 0.02
9 254 0.63
10 9 0.02
11 8 0.02
12 13 0.03
13 1 0.00
ACGTcount: A:0.47, C:0.20, G:0.01, T:0.32
Consensus pattern (9 bp):
AACTTACAT
Found at i:22021122 original size:20 final size:19
Alignment explanation
Indices: 22021099--22021137 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
22021089 TATAACTTGC
*
22021099 ATAACTTATATAATAACATA
1 ATAACTTACATAAT-ACATA
22021119 ATAACTTACATAATACATA
1 ATAACTTACATAATACATA
22021138 GCCTACATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.54, C:0.13, G:0.00, T:0.33
Consensus pattern (19 bp):
ATAACTTACATAATACATA
Found at i:22021168 original size:32 final size:32
Alignment explanation
Indices: 22021119--22021451 Score: 115
Period size: 34 Copynumber: 9.9 Consensus size: 32
22021109 TAATAACATA
*
22021119 ATAACTTACATAATACATAGCCTACATAACTT
1 ATAACTTACATAATACATAACCTACATAACTT
* *
22021151 ATAACTTACATAATACATAACCTTCCTAACTT
1 ATAACTTACATAATACATAACCTACATAACTT
* * * * * *
22021183 A-CATTATACACAACTTATATAACTTA-ATTAATATT
1 ATAACT-TACATAA--TACATAACCTACA-TAA-CTT
* *
22021218 ATACACAACTTACATAATACATTACTTACATAACTT
1 AT----AACTTACATAATACATAACCTACATAACTT
* * *
22021254 ACATAA--TACATTACTTACATAACTTACATTACTT
1 --ATAACTTACA-TA-ATACATAACCTACATAACTT
*
22021288 ACAGTACTTACATAATACATAA--TACATAACTT
1 ATA--ACTTACATAATACATAACCTACATAACTT
* * *
22021320 ACATAACATACA-ATATACATAACTTACATAACAT
1 --ATAACTTACATA-ATACATAACCTACATAACTT
* *** * *
22021354 ACATGATACATAACTTACATAACATACATAA-TAC
1 ATAACTTACATAA--TACATAACCTACATAACT-T
* * * **
22021388 ATAACTTACATAACATACAATATACATAACTT
1 ATAACTTACATAATACATAACCTACATAACTT
* * *
22021420 ACATAACATACATGATACATAACTTACATAAC
1 --ATAACTTACATAATACATAACCTACATAAC
22021452 ATACATAATT
Statistics
Matches: 222, Mismatches: 48, Indels: 60
0.67 0.15 0.18
Matches are distributed among these distances:
31 3 0.01
32 85 0.38
33 4 0.02
34 96 0.43
35 5 0.02
36 6 0.03
37 12 0.05
38 3 0.01
39 6 0.03
40 2 0.01
ACGTcount: A:0.47, C:0.20, G:0.01, T:0.32
Consensus pattern (32 bp):
ATAACTTACATAATACATAACCTACATAACTT
Found at i:22021191 original size:25 final size:25
Alignment explanation
Indices: 22021038--22021553 Score: 403
Period size: 25 Copynumber: 20.5 Consensus size: 25
22021028 TACATATCTT
22021038 ACATAATACATAACTTACATAA--T
1 ACATAATACATAACTTACATAACTT
* *
22021061 ACA-ACACTTACACAACTTAAATAACTT
1 ACATA-A--TACATAACTTACATAACTT
* * *
22021088 ATATAACTTGCATAACTTATATAA--T
1 ACATAA--TACATAACTTACATAACTT
*
22021113 A-A-CATA-ATAACTTACATAA--T
1 ACATAATACATAACTTACATAACTT
*
22021133 ACATAGCCTACATAACTT--ATAACTT
1 ACATA--ATACATAACTTACATAACTT
*
22021158 ACATAATACATAACCTT-CCTAACTT
1 ACATAATACATAA-CTTACATAACTT
* * *
22021183 ACATTATACACAACTTATATAACTT
1 ACATAATACATAACTTACATAACTT
* *
22021208 A-AT--TA-AT-ATTATACACAACTT
1 ACATAATACATAACT-TACATAACTT
*
22021229 ACATAATACATTACTTACATAACTT
1 ACATAATACATAACTTACATAACTT
*
22021254 ACATAATACATTACTTACATAACTT
1 ACATAATACATAACTTACATAACTT
*
22021279 ACATTACTTACAGT-ACTTACATAA--T
1 ACA-TA-ATACA-TAACTTACATAACTT
*
22021304 ACATAATACATAACTTACATAACAT
1 ACATAATACATAACTTACATAACTT
*
22021329 ACA-ATATACATAACTTACATAACAT
1 ACATA-ATACATAACTTACATAACTT
* *
22021354 ACATGATACATAACTTACATAACAT
1 ACATAATACATAACTTACATAACTT
*
22021379 ACATAATACATAACTTACATAACAT
1 ACATAATACATAACTTACATAACTT
*
22021404 ACA-ATATACATAACTTACATAACAT
1 ACATA-ATACATAACTTACATAACTT
* *
22021429 ACATGATACATAACTTACATAACAT
1 ACATAATACATAACTTACATAACTT
*
22021454 ACATAATTTAGTACATAACTTACTTACATAAATT
1 ACAT-A---A-TACATAA----CTTACATAACTT
*
22021488 ACATAATACACAACTTACATAACTT
1 ACATAATACATAACTTACATAACTT
22021513 ACATAATACATAACTTAGTACATAACTT
1 ACATAATACATAAC-T--TACATAACTT
22021541 ACATAATACATAA
1 ACATAATACATAA
22021554 AAATATAGCA
Statistics
Matches: 415, Mismatches: 34, Indels: 83
0.78 0.06 0.16
Matches are distributed among these distances:
20 16 0.04
21 12 0.03
22 6 0.01
23 30 0.07
24 17 0.04
25 241 0.58
26 5 0.01
27 33 0.08
28 25 0.06
29 7 0.02
30 8 0.02
33 1 0.00
34 14 0.03
ACGTcount: A:0.47, C:0.20, G:0.01, T:0.32
Consensus pattern (25 bp):
ACATAATACATAACTTACATAACTT
Found at i:22024222 original size:43 final size:43
Alignment explanation
Indices: 22024157--22024447 Score: 313
Period size: 43 Copynumber: 6.8 Consensus size: 43
22024147 CGTTTTTAGA
* * * *
22024157 AAAATCGCCGCTAAAAGTCATGATCTATAGCGGCATTTGTGGG
1 AAAAGCGCCGCTAAAAGACATGATCTTTAGCGGCGTTTGTGGG
* * *
22024200 AAAAGTGCCGCT-AAAGAACATGACCTTTAGCGGCGTTTGTTGG
1 AAAAGCGCCGCTAAAAG-ACATGATCTTTAGCGGCGTTTGTGGG
* * * * *
22024243 AAAAGCGCCGCTAAAAGTCATGTTCTTTAGTGGCGTTTATTGG
1 AAAAGCGCCGCTAAAAGACATGATCTTTAGCGGCGTTTGTGGG
* * * *
22024286 AAAAGCGCCGCTAAAAGTCATGTTCTTTAACGGCATTTGTGGG
1 AAAAGCGCCGCTAAAAGACATGATCTTTAGCGGCGTTTGTGGG
* * * *
22024329 -AAAGCGCCGCTAAAAGTCATGTTCTTTAGCGGCGTTTGTAGA
1 AAAAGCGCCGCTAAAAGACATGATCTTTAGCGGCGTTTGTGGG
* *
22024371 AAAAGCGCCGCT-AAAGAACATGA-GTTTAGCGGCGTTTGTGGA
1 AAAAGCGCCGCTAAAAG-ACATGATCTTTAGCGGCGTTTGTGGG
*
22024413 AAAAGCGCCGCT-AAAGAACATGACCTTTAGCGGCG
1 AAAAGCGCCGCTAAAAG-ACATGATCTTTAGCGGCG
22024448 CTTTTTATAC
Statistics
Matches: 216, Mismatches: 27, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
42 86 0.40
43 126 0.58
44 4 0.02
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAAGACATGATCTTTAGCGGCGTTTGTGGG
Found at i:22024363 original size:85 final size:87
Alignment explanation
Indices: 22024157--22024427 Score: 320
Period size: 85 Copynumber: 3.2 Consensus size: 87
22024147 CGTTTTTAGA
* * * * * *
22024157 AAAATCGCCGCTAAAAGTCATGATCTATAGCGGCATTTGTGGGAAAAGTGCCGCT-AAAGAACAT
1 AAAAGCGCCGCTAAAAGTCATGTTCTTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAAGAACAT
* *
22024221 GACCTTTAGCGGCGTTTGTTGG
66 GACCTTTAACGGCATTTGTTGG
* * * *
22024243 AAAAGCGCCGCTAAAAGTCATGTTCTTTAGTGGCGTTTATTGGAAAAGCGCCGCTAAAAG-TCAT
1 AAAAGCGCCGCTAAAAGTCATGTTCTTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAAGAACAT
**
22024307 GTTCTTTAACGGCATTTG-TGG
66 GACCTTTAACGGCATTTGTTGG
* *
22024328 GAAAGCGCCGCTAAAAGTCATGTTCTTTAGCGGCGTTTGTAGAAAAAGCGCCGCT-AAAGAACAT
1 AAAAGCGCCGCTAAAAGTCATGTTCTTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAAGAACAT
* * *
22024392 GA-GTTTAGCGGCGTTTG-TGG
66 GACCTTTAACGGCATTTGTTGG
22024412 AAAAAGCGCCGCTAAA
1 -AAAAGCGCCGCTAAA
22024428 GAACATGACC
Statistics
Matches: 158, Mismatches: 24, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
84 19 0.12
85 71 0.45
86 64 0.41
87 4 0.03
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (87 bp):
AAAAGCGCCGCTAAAAGTCATGTTCTTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAAGAACAT
GACCTTTAACGGCATTTGTTGG
Found at i:22024441 original size:85 final size:84
Alignment explanation
Indices: 22024157--22024494 Score: 347
Period size: 86 Copynumber: 4.0 Consensus size: 84
22024147 CGTTTTTAGA
* * * * * *
22024157 AAAATCGCCGCTAAAAGTCATGATCTATAGCGGCATTTGTGGGAAAAGTGCCGCTAAAGAACATG
1 AAAAGCGCCGCTAAAAGTCATGATCTTTAGCGGCGTTTGTAGAAAAAGCGCCGCTAAAGAACATG
22024222 ACCTTTAGCGGCGTTTGTTGG
66 A-CTTTAGCGGCGTTTG-TGG
* * * * * *
22024243 AAAAGCGCCGCTAAAAGTCATGTTCTTTAGTGGCGTTTATTGGAAAAGCGCCGCTAAA-AGTCAT
1 AAAAGCGCCGCTAAAAGTCATGATCTTTAGCGGCGTTTGTAGAAAAAGCGCCGCTAAAGA-ACAT
* * *
22024307 GTTCTTTAACGGCATTTGTGG
65 G-ACTTTAGCGGCGTTTGTGG
* *
22024328 GAAAGCGCCGCTAAAAGTCATGTTCTTTAGCGGCGTTTGTAGAAAAAGCGCCGCTAAAGAACATG
1 AAAAGCGCCGCTAAAAGTCATGATCTTTAGCGGCGTTTGTAGAAAAAGCGCCGCTAAAGAACATG
*
22024393 AGTTTAGCGGCGTTTGTGG
66 ACTTTAGCGGCGTTTGTGG
* * * * * * *
22024412 AAAAAGCGCCGCT-AAAGAACATGACCTTTAGCGGCGCTTTTTATACAAATCTCCGCTAAAGAAC
1 -AAAAGCGCCGCTAAAAG-TCATGATCTTTAGCGGCG-TTTGTAGAAAAAGCGCCGCTAAAGAAC
* *
22024476 ATGGCCTTTAGCAGCGTTT
63 AT-GACTTTAGCGGCGTTT
22024495 ATAAAAATAA
Statistics
Matches: 211, Mismatches: 34, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
84 19 0.09
85 87 0.41
86 92 0.44
87 13 0.06
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.27
Consensus pattern (84 bp):
AAAAGCGCCGCTAAAAGTCATGATCTTTAGCGGCGTTTGTAGAAAAAGCGCCGCTAAAGAACATG
ACTTTAGCGGCGTTTGTGG
Found at i:22024477 original size:44 final size:43
Alignment explanation
Indices: 22024140--22024494 Score: 281
Period size: 43 Copynumber: 8.3 Consensus size: 43
22024130 AATCTCAAAA
* * * * *
22024140 TTAGTGGCGTTTTTAGAAAAATCGCCGCTAAA-AGTCATGATCT
1 TTAGCGGCGTTTGTAGAAAAAGCGCCGCTAAAGA-ACATGACCT
* * * * *
22024183 ATAGCGGCATTTGTGGGAAAAGTGCCGCTAAAGAACATGACCT
1 TTAGCGGCGTTTGTAGAAAAAGCGCCGCTAAAGAACATGACCT
* * * **
22024226 TTAGCGGCGTTTGTTGGAAAAGCGCCGCTAAA-AGTCATGTTCT
1 TTAGCGGCGTTTGTAGAAAAAGCGCCGCTAAAGA-ACATGACCT
* * * * * **
22024269 TTAGTGGCGTTTATTGGAAAAGCGCCGCTAAA-AGTCATGTTCT
1 TTAGCGGCGTTTGTAGAAAAAGCGCCGCTAAAGA-ACATGACCT
* * ** * **
22024312 TTAACGGCATTTGT-GGGAAAGCGCCGCTAAA-AGTCATGTTCT
1 TTAGCGGCGTTTGTAGAAAAAGCGCCGCTAAAGA-ACATGACCT
*
22024354 TTAGCGGCGTTTGTAGAAAAAGCGCCGCTAAAGAACATGA-GT
1 TTAGCGGCGTTTGTAGAAAAAGCGCCGCTAAAGAACATGACCT
*
22024396 TTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGAACATGACCT
1 TTAGCGGCGTTTGTAGAAAAAGCGCCGCTAAAGAACATGACCT
* * * * * *
22024439 TTAGCGGCGCTTTTTATACAAATCTCCGCTAAAGAACATGGCCT
1 TTAGCGGCG-TTTGTAGAAAAAGCGCCGCTAAAGAACATGACCT
*
22024483 TTAGCAGCGTTT
1 TTAGCGGCGTTT
22024495 ATAAAAATAA
Statistics
Matches: 265, Mismatches: 41, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
42 80 0.30
43 148 0.56
44 37 0.14
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (43 bp):
TTAGCGGCGTTTGTAGAAAAAGCGCCGCTAAAGAACATGACCT
Found at i:22024501 original size:85 final size:84
Alignment explanation
Indices: 22024151--22024501 Score: 244
Period size: 85 Copynumber: 4.1 Consensus size: 84
22024141 TAGTGGCGTT
* * * * * * * *
22024151 TTTA-GAAAAATCGCCGCTAAAAGTCATGATCTATAGCGGCATTTGTGGGAAAAGTGCCGCTAAA
1 TTTATGAAAAAGCGCCGCTAAAAGACATGACCTTTAGCGGCGTTTGTAGAAAAAGCGCCGCTAAA
* *
22024215 GAACATGACCTTTAGCGGCG
66 GAACATGA-GTTTAGCAGCG
* * * ** * * * *
22024235 TTTGTTGGAAAAGCGCCGCTAAAAGTCATGTTCTTTAGTGGCGTTTATTGGAAAAGCGCCGCTAA
1 TTT-ATGAAAAAGCGCCGCTAAAAGACATGACCTTTAGCGGCGTTTGTAGAAAAAGCGCCGCTAA
* ** * * *
22024300 A-AGTCATGTTCTTTAACGGCA
65 AGA-ACATG-AGTTTAGCAGCG
* ** * **
22024321 TTTGTGGGAAAGCGCCGCTAAAAGTCATGTTCTTTAGCGGCGTTTGTAGAAAAAGCGCCGCTAAA
1 TTTATGAAAAAGCGCCGCTAAAAGACATGACCTTTAGCGGCGTTTGTAGAAAAAGCGCCGCTAAA
*
22024386 GAACATGAGTTTAGCGGCG
66 GAACATGAGTTTAGCAGCG
* * * * * *
22024405 TTTGTGGAAAAAGCGCCGCT-AAAGAACATGACCTTTAGCGGCGCTTTTTATACAAATCTCCGCT
1 TTTAT-GAAAAAGCGCCGCTAAAAG-ACATGACCTTTAGCGGCG-TTTGTAGAAAAAGCGCCGCT
22024469 AAAGAACATG-GCCTTTAGCAGCG
63 AAAGAACATGAG--TTTAGCAGCG
22024492 TTTAT-AAAAA
1 TTTATGAAAAA
22024502 TAAACGCCGC
Statistics
Matches: 220, Mismatches: 37, Indels: 19
0.80 0.13 0.07
Matches are distributed among these distances:
84 20 0.09
85 94 0.43
86 93 0.42
87 13 0.06
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.27
Consensus pattern (84 bp):
TTTATGAAAAAGCGCCGCTAAAAGACATGACCTTTAGCGGCGTTTGTAGAAAAAGCGCCGCTAAA
GAACATGAGTTTAGCAGCG
Found at i:22034770 original size:14 final size:14
Alignment explanation
Indices: 22034736--22034773 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
22034726 ACATCCTTTG
22034736 TTCTCTTTTCCTCT
1 TTCTCTTTTCCTCT
*
22034750 TTTTCTTTTCCT-T
1 TTCTCTTTTCCTCT
22034763 CTTCTCTTTTC
1 -TTCTCTTTTC
22034774 TTTCATCCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
13 1 0.05
14 20 0.95
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (14 bp):
TTCTCTTTTCCTCT
Done.