Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43060996
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2186021 characters in sequence are not A, C, G, or T
File 70 of 128
Found at i:22662017 original size:27 final size:27
Alignment explanation
Indices: 22661965--22662017 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
22661955 TAACATTTAG
* *
22661965 GCAGACTACCCTGTGTTTAGTTTCCCT
1 GCAGACTACCCTGTGTTTAATGTCCCT
22661992 GCAGACTATCCC-GTGTTTAATGTCCC
1 GCAGACTA-CCCTGTGTTTAATGTCCC
22662018 ATCGAACCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 20 0.87
28 3 0.13
ACGTcount: A:0.17, C:0.30, G:0.19, T:0.34
Consensus pattern (27 bp):
GCAGACTACCCTGTGTTTAATGTCCCT
Found at i:22664764 original size:44 final size:43
Alignment explanation
Indices: 22664714--22664854 Score: 157
Period size: 44 Copynumber: 3.3 Consensus size: 43
22664704 TCACATCAAG
22664714 TCTTATCTCCCTAAGCAGTAGTAGAGCAGACGAAAGAAACCAGA
1 TCTTATCTCCCTAAGCAGTAGT-GAGCAGACGAAAGAAACCAGA
** * * *
22664758 TCTTATCTCCCTAAGCAGTAGTG-G-AGTA-GATCGCATCAAG-
1 TCTTATCTCCCTAAGCAGTAGTGAGCAG-ACGAAAGAAACCAGA
*
22664798 TCTTATCTCTCTAAGCAGTAGTGGAGCAGACGAAAGAAACCA-A
1 TCTTATCTCCCTAAGCAGTAGT-GAGCAGACGAAAGAAACCAGA
*
22664841 TCCTATCTCCCTAA
1 TCTTATCTCCCTAA
22664855 AGTTGCAGTG
Statistics
Matches: 78, Mismatches: 13, Indels: 13
0.75 0.12 0.12
Matches are distributed among these distances:
40 21 0.27
41 10 0.13
42 4 0.05
43 21 0.27
44 22 0.28
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.23
Consensus pattern (43 bp):
TCTTATCTCCCTAAGCAGTAGTGAGCAGACGAAAGAAACCAGA
Found at i:22664813 original size:40 final size:39
Alignment explanation
Indices: 22664692--22664823 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 39
22664682 TCAACTTTCT
*
22664692 TAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAG
1 TAGTGGAG-AGATCGCATCAAGTCTTATCTCCCTAAGCAG
** * * *
22664732 TAGTAGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAG
1 TAGT-G-G-AGA-GATCGCATCAAG-TCTTATCTCCCTAAGCAG
*
22664776 TAGTGGAGTAGATCGCATCAAGTCTTATCTCTCTAAGCAG
1 TAGTGGAG-AGATCGCATCAAGTCTTATCTCCCTAAGCAG
22664816 TAGTGGAG
1 TAGTGGAG
22664824 CAGACGAAAG
Statistics
Matches: 74, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
40 29 0.39
41 10 0.14
42 4 0.05
43 9 0.12
44 22 0.30
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.24
Consensus pattern (39 bp):
TAGTGGAGAGATCGCATCAAGTCTTATCTCCCTAAGCAG
Found at i:22664833 original size:84 final size:83
Alignment explanation
Indices: 22664692--22664854 Score: 272
Period size: 84 Copynumber: 2.0 Consensus size: 83
22664682 TCAACTTTCT
22664692 TAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTAGAGCAGACGAAAGAAACCAG
1 TAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTAGAGCAGACGAAAGAAACCA-
*
22664757 ATCTTATCTCCCTAAGCAG
65 ATCCTATCTCCCTAAGCAG
* * * *
22664776 TAGTGGAGTAGATCGCATCAAGTCTTATCTCTCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAA
1 TAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTAGAGCAGACGAAAGAAACCAA
22664841 TCCTATCTCCCTAA
66 TCCTATCTCCCTAA
22664855 AGTTGCAGTG
Statistics
Matches: 74, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
83 14 0.19
84 60 0.81
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.23
Consensus pattern (83 bp):
TAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTAGAGCAGACGAAAGAAACCAA
TCCTATCTCCCTAAGCAG
Found at i:22665590 original size:16 final size:15
Alignment explanation
Indices: 22665571--22665605 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
22665561 AGATCTGTTG
**
22665571 TTTTTACTTGTTTTA
1 TTTTTACTTCATTTA
22665586 TTTTTACTTCATTTA
1 TTTTTACTTCATTTA
22665601 TTTTT
1 TTTTT
22665606 CAAAACAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.14, C:0.09, G:0.03, T:0.74
Consensus pattern (15 bp):
TTTTTACTTCATTTA
Found at i:22673676 original size:26 final size:23
Alignment explanation
Indices: 22673640--22673690 Score: 66
Period size: 26 Copynumber: 2.1 Consensus size: 23
22673630 TCTTTTCTCT
*
22673640 TTTTTTCTTTTCATTTTTAGTTTAGG
1 TTTTCTCTTTTC-TTTTT--TTTAGG
22673666 TTTTCTCTTTTCTTTTTTTTAGG
1 TTTTCTCTTTTCTTTTTTTTAGG
22673689 TT
1 TT
22673691 AGATTTTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 8 0.33
25 5 0.21
26 11 0.46
ACGTcount: A:0.08, C:0.10, G:0.10, T:0.73
Consensus pattern (23 bp):
TTTTCTCTTTTCTTTTTTTTAGG
Found at i:22677968 original size:5 final size:6
Alignment explanation
Indices: 22677935--22677977 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
22677925 GGGGTCAAAG
* * * *
22677935 AAAAAG AAAAAT AAAAAT CAAAGT CAAAAT AAAAAT AAAAAT A
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT A
22677978 TGAAAAGCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.77, C:0.05, G:0.05, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:22679762 original size:87 final size:87
Alignment explanation
Indices: 22679585--22679840 Score: 374
Period size: 87 Copynumber: 3.0 Consensus size: 87
22679575 GTGAAAATCG
* * *
22679585 AAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGA-AGCAGATCTTGCCTTCCT
1 AAAACAAAGCCTTGCCTCTATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCATTCCT
* *
22679649 GCATTAACAGTGAAGCAGATCG
66 GCGTTAACAGTGAAGCAGATCA
* * *
22679671 AAAACAAAGCCTTGCCTCTATCGGTTGCAGTGGAGCAGGTTGAAGATAGTAGATCTTGCATTCCT
1 AAAACAAAGCCTTGCCTCTATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCATTCCT
*
22679736 GTGTTAACAGTGAAGCAGATCA
66 GCGTTAACAGTGAAGCAGATCA
*
22679758 AAAACAAAGCCTTGCCT-TCATCAGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCATT-
1 AAAACAAAGCCTTGCCTCT-ATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTG-CATTC
*
22679821 CTGCGTCAACAGTGAAGCAG
64 CTGCGTTAACAGTGAAGCAG
22679841 GTCGAAGATT
Statistics
Matches: 152, Mismatches: 15, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
86 43 0.28
87 105 0.69
88 4 0.03
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (87 bp):
AAAACAAAGCCTTGCCTCTATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCATTCCT
GCGTTAACAGTGAAGCAGATCA
Found at i:22685437 original size:56 final size:56
Alignment explanation
Indices: 22685365--22685477 Score: 163
Period size: 56 Copynumber: 2.0 Consensus size: 56
22685355 AAATCTCGAC
* * * *
22685365 TAATATACTCAAAATGCTTCTGTACAATTTCATACCCAATGACAAATATCATTCAA
1 TAATATACTCAAAATGCTTCTATAAAATTTCACACCCAATGACAAATATAATTCAA
** *
22685421 TAATATACTTGAAATGCTTCTATAAAATTTCACACCCAATGACAGATATAATTCAA
1 TAATATACTCAAAATGCTTCTATAAAATTTCACACCCAATGACAAATATAATTCAA
22685477 T
1 T
22685478 CTCGTAATTA
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.42, C:0.19, G:0.06, T:0.33
Consensus pattern (56 bp):
TAATATACTCAAAATGCTTCTATAAAATTTCACACCCAATGACAAATATAATTCAA
Found at i:22691475 original size:25 final size:24
Alignment explanation
Indices: 22691421--22691484 Score: 110
Period size: 24 Copynumber: 2.6 Consensus size: 24
22691411 GGCCCATATT
*
22691421 AAATATATATTTGCTTAAAAATAA
1 AAATATATATTTGATTAAAAATAA
22691445 AAATATATATTTGATTAAAAATAA
1 AAATATATATTTGATTAAAAATAA
22691469 AATATATATATTTGAT
1 AA-ATATATATTTGAT
22691485 ATATAATTCG
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
24 25 0.66
25 13 0.34
ACGTcount: A:0.53, C:0.02, G:0.05, T:0.41
Consensus pattern (24 bp):
AAATATATATTTGATTAAAAATAA
Found at i:22694163 original size:13 final size:13
Alignment explanation
Indices: 22694144--22694174 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
22694134 ATATACTGTG
22694144 GAAAAGTGCTTTT
1 GAAAAGTGCTTTT
*
22694157 TAAAAGTGCTTTT
1 GAAAAGTGCTTTT
22694170 GAAAA
1 GAAAA
22694175 TTTTGGTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.19, T:0.35
Consensus pattern (13 bp):
GAAAAGTGCTTTT
Found at i:22695279 original size:451 final size:451
Alignment explanation
Indices: 22694437--22695342 Score: 1650
Period size: 451 Copynumber: 2.0 Consensus size: 451
22694427 GAGGAAAAGC
22694437 TAAAATTTTTAGCTTCTCCTTTTCAACTCCTTTTCAGAAGTGCTTTTGAAAAGCACTTCTGAAAA
1 TAAAATTTTTAGCTTCTCCTTTTCAACTCCTTTTCAGAAGTGCTTTTGAAAAGCACTTCTGAAAA
* *
22694502 GCTAAAAATTTCAGCCAAAAGCAGCTTGTTCTTCACAACTTTTCTTTCAAAAGTGCTTTTGGAGT
66 GCTAAAAATTTCAGCCAAAAGCAGCTTATTCTTCACAACTTTTCTTTCAAAAGTGCTTTTGGAAT
*
22694567 CAGAAGTACTTTTTTTAAGCAATGAAGAACTGGCCCTTAATAAATCTCCAACCCTTTTCACCTTT
131 CAGAAGTACTTTTTTTAAGCAATGAAGAACTGGCCCTTAATAAATCTCCAACCCTTTTCACATTT
* *
22694632 TCCAGTAAAGGGGTCAGTCATTTTATCAATGAGACAATATTCACATGTTCCAAATGATTTCACAT
196 TCCAGTAAAGGGGTCAATCATTTTATCAATGAGACAATATTCACATGTTCCAAATAATTTCACAT
* *
22694697 AATTCATAGTCATAGCTTTGTTTATGTAACTTGGCTATCCAAGTTTCATTGACATAACCAAATCT
261 AATTCATAATCATAGCTTTGTTTACGTAACTTGGCTATCCAAGTTTCATTGACATAACCAAATCT
* * * *
22694762 ACAAGATGCATATGTCTACAATACCAAGTCTACAACCGATTGTTGAACCCTAAAAATTTCTATCA
326 ACAAGAAGCATATGTCAACAATACCAAGTCTACAACCAATTGTTGAACCCTAAAAATTTATATCA
* * *
22694827 CCATTTCTAACCGCACTGTCTCTTACCTAGGTGGTTAGGAAATTTGAAGCTACCACGTGTT
391 CCATTTCTAACCACACTATCTCTTACCTAGGTGGTTAGGAAATTTGAAGCTACCACGTGCT
22694888 TAAAATTTTTAGCTTCTCCTTTTCAACTCCTTTTCAGAAGTGCTTTTGAAAAGCACTTCTGAAAA
1 TAAAATTTTTAGCTTCTCCTTTTCAACTCCTTTTCAGAAGTGCTTTTGAAAAGCACTTCTGAAAA
*
22694953 GCTAAAAATTTCAGCCAAAAGCAGCTTATTCTTCACAGCTTTTCTTTCAAAAGTGCTTTTGGAAT
66 GCTAAAAATTTCAGCCAAAAGCAGCTTATTCTTCACAACTTTTCTTTCAAAAGTGCTTTTGGAAT
*
22695018 CAGAAGTACTTTTTTTAAGCAATGAAGAACTGGCCCTTACTAAATCTCCAACCCTTTTCACATTT
131 CAGAAGTACTTTTTTTAAGCAATGAAGAACTGGCCCTTAATAAATCTCCAACCCTTTTCACATTT
22695083 TCCAGTAAAGGGGTCAATCATTTTATCAATGAGACAATATTCACATGTTCCAAATAATTTCACAT
196 TCCAGTAAAGGGGTCAATCATTTTATCAATGAGACAATATTCACATGTTCCAAATAATTTCACAT
22695148 AATTCATAATCATAGCTTTGTTTACGTAACTTGGCTATCCAAGTTTCATTGACATAACCAAATCT
261 AATTCATAATCATAGCTTTGTTTACGTAACTTGGCTATCCAAGTTTCATTGACATAACCAAATCT
*
22695213 ACAATAAGCATATGTCAACAATACCAAGTCTACAACCAATTGTTGAACCCTAAAAATTTATATCA
326 ACAAGAAGCATATGTCAACAATACCAAGTCTACAACCAATTGTTGAACCCTAAAAATTTATATCA
*
22695278 CCATTTCTAACCACACTATGTCTTACCTAGGTGGTTAGGAAATTTGAAGCTACCACGTGCT
391 CCATTTCTAACCACACTATCTCTTACCTAGGTGGTTAGGAAATTTGAAGCTACCACGTGCT
22695339 TAAA
1 TAAA
22695343 TTCTTTAAAT
Statistics
Matches: 437, Mismatches: 18, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
451 437 1.00
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (451 bp):
TAAAATTTTTAGCTTCTCCTTTTCAACTCCTTTTCAGAAGTGCTTTTGAAAAGCACTTCTGAAAA
GCTAAAAATTTCAGCCAAAAGCAGCTTATTCTTCACAACTTTTCTTTCAAAAGTGCTTTTGGAAT
CAGAAGTACTTTTTTTAAGCAATGAAGAACTGGCCCTTAATAAATCTCCAACCCTTTTCACATTT
TCCAGTAAAGGGGTCAATCATTTTATCAATGAGACAATATTCACATGTTCCAAATAATTTCACAT
AATTCATAATCATAGCTTTGTTTACGTAACTTGGCTATCCAAGTTTCATTGACATAACCAAATCT
ACAAGAAGCATATGTCAACAATACCAAGTCTACAACCAATTGTTGAACCCTAAAAATTTATATCA
CCATTTCTAACCACACTATCTCTTACCTAGGTGGTTAGGAAATTTGAAGCTACCACGTGCT
Found at i:22708770 original size:22 final size:22
Alignment explanation
Indices: 22708740--22708785 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
22708730 TGGTCTTGGG
* *
22708740 GCCTCTGGTGCTGACATTTTCT
1 GCCTCTGGTGCTAACATTCTCT
*
22708762 GCCTTTGGTGCTAACATTCTCT
1 GCCTCTGGTGCTAACATTCTCT
22708784 GC
1 GC
22708786 GCGCCCCCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.11, C:0.28, G:0.22, T:0.39
Consensus pattern (22 bp):
GCCTCTGGTGCTAACATTCTCT
Found at i:22709620 original size:43 final size:41
Alignment explanation
Indices: 22709550--22709681 Score: 113
Period size: 43 Copynumber: 3.1 Consensus size: 41
22709540 TGCGTTTATT
* * *
22709550 GCTAAAGATCATGTTATTTAGCAGCGCTTATCCAACACACGCC
1 GCTAAAGGTCATGTTCTTTAGCGGCGCTT-TCCAACA-ACGCC
* * *
22709593 GCTAAAGGTCATGTTCTTTAGTGGCGCTTTTTTCGAA-AACGTC
1 GCTAAAGGTCATGTTCTTTAGCGGCGC---TTTCCAACAACGCC
* * *
22709636 ACTAAAGGTCATGTTCTTTACCGGCGCTTTCTCCACAAACGCC
1 GCTAAAGGTCATGTTCTTTAGCGGCGCTTTC-CAAC-AACGCC
22709679 GCT
1 GCT
22709682 GTTGTTTGGT
Statistics
Matches: 70, Mismatches: 13, Indels: 12
0.74 0.14 0.13
Matches are distributed among these distances:
40 4 0.06
41 1 0.01
43 58 0.83
44 1 0.01
45 4 0.06
46 2 0.03
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (41 bp):
GCTAAAGGTCATGTTCTTTAGCGGCGCTTTCCAACAACGCC
Found at i:22709779 original size:25 final size:26
Alignment explanation
Indices: 22709751--22709812 Score: 101
Period size: 25 Copynumber: 2.5 Consensus size: 26
22709741 GTAAAATAAA
*
22709751 ATTATGTAAGTTAC-GTAAGTTATGT
1 ATTATGTAAGTTACTGTAAGTAATGT
22709776 ATTATGTAAG-TACTGTAAGTAATGT
1 ATTATGTAAGTTACTGTAAGTAATGT
22709801 ATTATGTAAGTT
1 ATTATGTAAGTT
22709813 GTGTATAATA
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
24 3 0.09
25 30 0.88
26 1 0.03
ACGTcount: A:0.34, C:0.03, G:0.19, T:0.44
Consensus pattern (26 bp):
ATTATGTAAGTTACTGTAAGTAATGT
Found at i:22709786 original size:16 final size:17
Alignment explanation
Indices: 22709750--22709817 Score: 61
Period size: 16 Copynumber: 4.1 Consensus size: 17
22709740 TGTAAAATAA
*
22709750 AATTATGTAAGTTACGT
1 AATTATGTAAGTTATGT
22709767 AAGTTATGT-A-TTATGT
1 AA-TTATGTAAGTTATGT
* *
22709783 AAGTACTGTAAGTAATGT
1 AATTA-TGTAAGTTATGT
*
22709801 -ATTATGTAAGTTGTGT
1 AATTATGTAAGTTATGT
22709817 A
1 A
22709818 TAATATTAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
15 2 0.05
16 20 0.50
17 7 0.17
18 11 0.28
ACGTcount: A:0.34, C:0.03, G:0.21, T:0.43
Consensus pattern (17 bp):
AATTATGTAAGTTATGT
Found at i:22709893 original size:9 final size:9
Alignment explanation
Indices: 22709879--22709994 Score: 130
Period size: 9 Copynumber: 12.7 Consensus size: 9
22709869 ATGTATTATG
22709879 TATGTAAGT
1 TATGTAAGT
22709888 TATGTAAGT
1 TATGTAAGT
* *
22709897 TATTTAATT
1 TATGTAAGT
22709906 TATGTAAGT
1 TATGTAAGT
22709915 TATGTAAGT
1 TATGTAAGT
22709924 TA-GTAAGGT
1 TATGTAA-GT
22709933 TATGT-A-T
1 TATGTAAGT
22709940 TATGTACGTACGT
1 TATGTA---A-GT
22709953 TATGTAAGT
1 TATGTAAGT
* *
22709962 TATTTAATT
1 TATGTAAGT
22709971 TATGTAAGT
1 TATGTAAGT
22709980 TATGTAAGT
1 TATGTAAGT
22709989 TATGTA
1 TATGTA
22709995 GGCTATGTTT
Statistics
Matches: 91, Mismatches: 8, Indels: 16
0.79 0.07 0.14
Matches are distributed among these distances:
7 6 0.07
8 4 0.04
9 70 0.77
10 3 0.03
11 1 0.01
13 7 0.08
ACGTcount: A:0.32, C:0.02, G:0.19, T:0.47
Consensus pattern (9 bp):
TATGTAAGT
Found at i:22709920 original size:65 final size:65
Alignment explanation
Indices: 22709851--22710009 Score: 255
Period size: 65 Copynumber: 2.4 Consensus size: 65
22709841 GTTGTGTATA
*
22709851 ATGTAAGTTAGGAAGGTTATGTATTATGTATGTAAGTTATGTAAGTTATTTAATTTATGTAAGTT
1 ATGTAAGTTAGGAAGGTTATGTATTATGTACGTAAGTTATGTAAGTTATTTAATTTATGTAAGTT
* *
22709916 ATGTAAGTTAGTAAGGTTATGTATTATGTACGTACGTTATGTAAGTTATTTAATTTATGTAAGTT
1 ATGTAAGTTAGGAAGGTTATGTATTATGTACGTAAGTTATGTAAGTTATTTAATTTATGTAAGTT
* * * *
22709981 ATGTAAGTTATGTAGGCTATGTTTTATGT
1 ATGTAAGTTAGGAAGGTTATGTATTATGT
22710010 TAGTTATTAT
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
65 86 1.00
ACGTcount: A:0.30, C:0.02, G:0.21, T:0.47
Consensus pattern (65 bp):
ATGTAAGTTAGGAAGGTTATGTATTATGTACGTAAGTTATGTAAGTTATTTAATTTATGTAAGTT
Found at i:22710088 original size:16 final size:15
Alignment explanation
Indices: 22710067--22710100 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
22710057 ATATATTGTA
*
22710067 TATTATTTAAGTTATG
1 TATTATGTAAGTT-TG
22710083 TATTATGTAAGTTTG
1 TATTATGTAAGTTTG
22710098 TAT
1 TAT
22710101 ATAATGTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.29, C:0.00, G:0.15, T:0.56
Consensus pattern (15 bp):
TATTATGTAAGTTTG
Found at i:22710095 original size:52 final size:54
Alignment explanation
Indices: 22710033--22710146 Score: 137
Period size: 52 Copynumber: 2.1 Consensus size: 54
22710023 ATTATATAAG
* *
22710033 TTATGCAAGTTTATATATAA-GT-TTATAT-ATTGTATATTATTTAAG-TTATGTA
1 TTATGTAAGTTTATATATAATGTATTATATGATTG-ATA-AATTTAAGATTATGTA
* *
22710085 TTATGTAAGTTTGTATATAATGTATTATATGATTGATAAATTTATGTATTATGTA
1 TTATGTAAGTTTATATATAATGTATTATATGATTGATAAATTTAAG-ATTATGTA
22710140 TTATGTA
1 TTATGTA
22710147 TTATATATCA
Statistics
Matches: 53, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
52 18 0.34
53 8 0.15
54 9 0.17
55 18 0.34
ACGTcount: A:0.34, C:0.01, G:0.13, T:0.52
Consensus pattern (54 bp):
TTATGTAAGTTTATATATAATGTATTATATGATTGATAAATTTAAGATTATGTA
Found at i:22710561 original size:31 final size:31
Alignment explanation
Indices: 22710519--22710581 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
22710509 GTATATTGAT
22710519 TTAGCAGCAAAAAACAATAAAAGGTACCATC
1 TTAGCAGCAAAAAACAATAAAAGGTACCATC
* * *
22710550 TTAGTAGCAAAAACCAATAAAAGGTACTATC
1 TTAGCAGCAAAAAACAATAAAAGGTACCATC
22710581 T
1 T
22710582 AATTAGCTGC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.49, C:0.17, G:0.13, T:0.21
Consensus pattern (31 bp):
TTAGCAGCAAAAAACAATAAAAGGTACCATC
Found at i:22710599 original size:34 final size:31
Alignment explanation
Indices: 22710519--22710606 Score: 97
Period size: 31 Copynumber: 2.7 Consensus size: 31
22710509 GTATATTGAT
* *
22710519 TTAGCAGCAAAAAACAATAAAAGGTACCATC
1 TTAGCTGCAAAAACCAATAAAAGGTACCATC
*
22710550 TTAG-TAGCAAAAACCAATAAAAGGTACTATC
1 TTAGCT-GCAAAAACCAATAAAAGGTACCATC
22710581 TAATTAGCTGCAAAAACCAATTAAAA
1 ---TTAGCTGCAAAAACCAA-TAAAA
22710607 TCCTTTATAT
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
31 27 0.56
34 15 0.31
35 6 0.12
ACGTcount: A:0.51, C:0.17, G:0.11, T:0.20
Consensus pattern (31 bp):
TTAGCTGCAAAAACCAATAAAAGGTACCATC
Found at i:22711025 original size:13 final size:13
Alignment explanation
Indices: 22710992--22711029 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
22710982 AAAGAACTTG
22710992 CAGCAACATTAAC
1 CAGCAACATTAAC
*
22711005 C-CCTAACATTAAC
1 CAGC-AACATTAAC
22711018 CAGCAACATTAA
1 CAGCAACATTAA
22711030 GCAGAACTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
12 1 0.05
13 19 0.90
14 1 0.05
ACGTcount: A:0.45, C:0.32, G:0.05, T:0.18
Consensus pattern (13 bp):
CAGCAACATTAAC
Found at i:22711135 original size:32 final size:31
Alignment explanation
Indices: 22711075--22711135 Score: 79
Period size: 33 Copynumber: 1.9 Consensus size: 31
22711065 TTAAGCAAAA
* *
22711075 ACCAAATTAAAACAGTCCCAACTACAAATAT
1 ACCAAATTAAAACAGTCCAAAATACAAATAT
22711106 ACCAAATTTAAAAACAGTCCAAAAT-CAAAT
1 ACCAAA-TT-AAAACAGTCCAAAATACAAAT
22711136 GCAAATTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
31 6 0.23
32 7 0.27
33 13 0.50
ACGTcount: A:0.54, C:0.23, G:0.03, T:0.20
Consensus pattern (31 bp):
ACCAAATTAAAACAGTCCAAAATACAAATAT
Found at i:22712049 original size:29 final size:29
Alignment explanation
Indices: 22711980--22712054 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
22711970 CTAAATGCTG
* *
22711980 TGAAGAATTGAATAACTAAACCTATGAGA
1 TGAAGAATTGAATAACTAAACCGACGAGA
*
22712009 TGAAGAAATGAATAACTAAACCGACGAGA
1 TGAAGAATTGAATAACTAAACCGACGAGA
* *
22712038 TGAAGATTTGAAAAACT
1 TGAAGAATTGAATAACT
22712055 GGATTTAGGG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.49, C:0.11, G:0.19, T:0.21
Consensus pattern (29 bp):
TGAAGAATTGAATAACTAAACCGACGAGA
Found at i:22715915 original size:21 final size:22
Alignment explanation
Indices: 22715879--22715923 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
22715869 ATTAACTATA
* *
22715879 AACCCCTAAACCCCTAACCCTT
1 AACCCCTAAACACCTAAACCTT
22715901 AACCCC-AAACACCTAAACCTT
1 AACCCCTAAACACCTAAACCTT
22715922 AA
1 AA
22715924 ATCCCAACTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.40, C:0.44, G:0.00, T:0.16
Consensus pattern (22 bp):
AACCCCTAAACACCTAAACCTT
Found at i:22716022 original size:39 final size:39
Alignment explanation
Indices: 22715968--22716051 Score: 150
Period size: 39 Copynumber: 2.2 Consensus size: 39
22715958 AACTCGTATT
*
22715968 CCTTAAACCCTGAATCATAGAACATATATAAACTATAAA
1 CCTTAAACCCTGAATCATAAAACATATATAAACTATAAA
22716007 CCTTAAACCCTGAATCATAAAACATATATAAACTATAAA
1 CCTTAAACCCTGAATCATAAAACATATATAAACTATAAA
*
22716046 CTTTAA
1 CCTTAA
22716052 CACTTAAACA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.49, C:0.20, G:0.04, T:0.27
Consensus pattern (39 bp):
CCTTAAACCCTGAATCATAAAACATATATAAACTATAAA
Found at i:22716066 original size:39 final size:39
Alignment explanation
Indices: 22715968--22716066 Score: 119
Period size: 39 Copynumber: 2.5 Consensus size: 39
22715958 AACTCGTATT
* * *
22715968 CCTTAAACCCTGAATCATAGAACATATATAAACTATAAA
1 CCTTAAACACTGAAACATAAAACATATATAAACTATAAA
* *
22716007 CCTTAAACCCTGAATCATAAAACATATATAAACTATAAA
1 CCTTAAACACTGAAACATAAAACATATATAAACTATAAA
* *
22716046 -CTTTAACACTTAAACAATAAA
1 CCTTAAACACTGAAAC-ATAAA
22716067 CAATAAATCG
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
38 11 0.20
39 43 0.80
ACGTcount: A:0.51, C:0.20, G:0.03, T:0.26
Consensus pattern (39 bp):
CCTTAAACACTGAAACATAAAACATATATAAACTATAAA
Found at i:22716657 original size:114 final size:112
Alignment explanation
Indices: 22716151--22716872 Score: 418
Period size: 115 Copynumber: 6.3 Consensus size: 112
22716141 TTGCTTAACT
* * *** * *
22716151 TTTTGCGGCGTTTTTTTGTAAAGCGCCACTAATGTCTCTAAACATCCACTCCAAAACGATGCCGT
1 TTTTGCGGCG--TTTTTGTAAAGCGCCACTAATGTCTCTAAACCTCAACAGAAAAACGACGTCGT
* * *** * ** *
22716216 TTGCTTAAATCTTTTTGCGGCGCTTTTGGGAAAACGCCGCTGTTGCTTGAC
64 TTG-TTAAAACTTTTTGAGGCGC-TTTCATAAAGCGCCGCTAATGTTTGAC
* * * * * *
22716267 TCCTT-CGGCGTTTTTATAATTGCGCCGCTAATGTGC-CTAAACCTTAACA-ACAAAAC-ATTGT
1 T-TTTGCGGCGTTTTTGTAA-AGCGCCACTAATGT-CTCTAAACCTCAACAGA-AAAACGA-CGT
* *
22716328 CGTTTGCTTAAAAAC-TTTT-ACGGCGCTTTTGC-GAAAGCACCGCTAAT-TCTTGAC
61 CGTTTG-TT-AAAACTTTTTGA-GGCGC-TTT-CATAAAGCGCCGCTAATGT-TTGAC
* * * * * * * * *
22716382 TTTTGCGACGTTTTGAGGAATGCTCCACTAATGTCTCTAAATCTTAA-AAAGAAAACGTCGTCGT
1 TTTTGCGGCGTTTT-TGTAAAGCGCCACTAATGTCTCTAAACCTCAACAGA-AAAACGACGTCGT
* * * * * *
22716446 TTGCCTAAAAC-TATTGTGGCACTTTCGAGAAAGCGCCGGTAATGCTTTGAC
64 TTG-TTAAAACTTTTTGAGGCGCTTTC-ATAAAGCGCCGCTAATG-TTTGAC
* * ** * *
22716497 TTTTGCGGCTTTTTTTGCAAAGCGCCACTAATGTCTCTAATGCTCAACAGAAAAACGACGCCTTT
1 TTTTGCGGC-GTTTTTGTAAAGCGCCACTAATGTCTCTAAACCTCAACAGAAAAACGACGTCGTT
* * *
22716562 TGCTTAAAACTTTTTGCGGCGCTTTCCTTAAGCGCCGCTAATGTTTGAC
65 TG-TTAAAACTTTTTGAGGCGCTTTCATAAAGCGCCGCTAATGTTTGAC
** * *
22716611 TTACGCGGCGTTTTATGTAAAGCGCCACTAATGTGTCTAAACCTCAACATG-GAAACGACGTCGT
1 TTTTGCGGCGTTTT-TGTAAAGCGCCACTAATGTCTCTAAACCTCAACA-GAAAAACGACGTCGT
* * * ***
22716675 TTGATAAAAC-TTTTGTGGCGC-TTCGGAGAAAGCGCCGCTAATACATGATC
64 TTGTTAAAACTTTTTGAGGCGCTTTC--ATAAAGCGCCGCTAATGTTTGA-C
* *
22716725 TTTTGCGGCGTTTCCTTATAAA-CGCCACTAATGTCTCTAAACCT-AA-A-ATAAAACGTCGTCG
1 TTTTGCGGCGTTT--TTGTAAAGCGCCACTAATGTCTCTAAACCTCAACAGA-AAAACGACGTCG
* * * **
22716786 TCTGTTTAACAGTTTTT-AGGCGCTTTTGTAAAAGCGCCGCTAATGTTTGAC
63 TTTG-TTAAAACTTTTTGAGGCGCTTTCAT-AAAGCGCCGCTAATGTTTGAC
* *
22716837 TTTTGCGGCGTTTTGTTTGAAGCGCCACTAATGTCT
1 TTTTGCGGCGTTTT-TGTAAAGCGCCACTAATGTCT
22716873 TTGAAGCTCA
Statistics
Matches: 476, Mismatches: 93, Indels: 78
0.74 0.14 0.12
Matches are distributed among these distances:
110 1 0.00
111 7 0.01
112 53 0.11
113 57 0.12
114 133 0.28
115 190 0.40
116 33 0.07
117 2 0.00
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.33
Consensus pattern (112 bp):
TTTTGCGGCGTTTTTGTAAAGCGCCACTAATGTCTCTAAACCTCAACAGAAAAACGACGTCGTTT
GTTAAAACTTTTTGAGGCGCTTTCATAAAGCGCCGCTAATGTTTGAC
Found at i:22716849 original size:112 final size:110
Alignment explanation
Indices: 22716406--22716872 Score: 338
Period size: 114 Copynumber: 4.1 Consensus size: 110
22716396 GAGGAATGCT
* * * * * * * *
22716406 CCACTAATGTCTCTAAATCTTAAAAAGAAAACGTCGTCGTTTGCCTAAAACTATTGTGGCACTTT
1 CCACTAATGTCTCTAAACCTCAAAATGAAAACGACGTCGTCTG-ATAAAACTTTTGTGGCGC-TT
* *
22716471 C-GAGAAAGCGCCGGTAATGCTTTGACTTTTGCGGCTTTTTTTGCAAAGCG
64 CGGAGAAAGCGCCGCTAATG-TTTGACTTTTGCGGCGTTTTTT--AAA-CG
** * * * * * *
22716521 CCACTAATGTCTCTAATGCTCAACA-GAAAAACGACGCCTTTTGCTTAAAACTTTTTGCGGCGCT
1 CCACTAATGTCTCTAAACCTCAAAATG-AAAACGACGTCGTCTG-ATAAAAC-TTTTGTGGCGC-
*** **
22716585 TTC--CTTAAGCGCCGCTAATGTTTGACTTACGCGGCGTTTTATGTAAAGCG
62 TTCGGAGAAAGCGCCGCTAATGTTTGACTTTTGCGGCGTTTT-T-TAAA-CG
* * * *
22716635 CCACTAATGTGTCTAAACCTCAACATGGAAACGACGTCGTTTGATAAAACTTTTGTGGCGCTTCG
1 CCACTAATGTCTCTAAACCTCAAAATGAAAACGACGTCGTCTGATAAAACTTTTGTGGCGCTTCG
***
22716700 GAGAAAGCGCCGCTAATACATGATCTTTTGCGGCGTTTCCTTATAAACG
66 GAGAAAGCGCCGCTAATGTTTGA-CTTTTGCGGCGTTT--TT-TAAACG
* * * *
22716749 CCACTAATGTCTCTAAACCT-AAAAT-AAAACGTCGTCGTCTGTTTAACAGTTTT-TAGGCGCTT
1 CCACTAATGTCTCTAAACCTCAAAATGAAAACGACGTCGTCTG-ATAAAACTTTTGT-GGCGC-T
* * *
22716811 TTGTA-AAAGCGCCGCTAATGTTTGACTTTTGCGGCGTTTTGTTTGAAGCG
63 TCGGAGAAAGCGCCGCTAATGTTTGACTTTTGCGGCG-TTT-TTT-AAACG
22716861 CCACTAATGTCT
1 CCACTAATGTCT
22716873 TTGAAGCTCA
Statistics
Matches: 287, Mismatches: 50, Indels: 33
0.78 0.14 0.09
Matches are distributed among these distances:
111 4 0.01
112 53 0.18
113 59 0.21
114 96 0.33
115 61 0.21
116 14 0.05
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (110 bp):
CCACTAATGTCTCTAAACCTCAAAATGAAAACGACGTCGTCTGATAAAACTTTTGTGGCGCTTCG
GAGAAAGCGCCGCTAATGTTTGACTTTTGCGGCGTTTTTTAAACG
Found at i:22716895 original size:226 final size:228
Alignment explanation
Indices: 22716332--22716895 Score: 554
Period size: 226 Copynumber: 2.5 Consensus size: 228
22716322 CATTGTCGTT
* * *
22716332 TGCTTAAAAAC-TTTTACGGCGCTTTTGCGAAAGCACCGCTAAT-TCTTGACTTTTGCGACGTTT
1 TGCTT-AAAACTTTTTA-GGCGCTTTTG-TAAAGCGCCGCTAATGT-TTGACTTTTGCGGCGTTT
* * * * * * *
22716395 TG-AGGAATGCTCCACTAATGTCTCTAAATCTTAAAAAGAAAACGTCGTCGTTTGCCTAAAACTA
62 TGTATGAA-GCGCCACTAATGTCTCTAAACCTCAACAAGAAAACGACGTCGTTTGCATAAAACTA
* * * ** *
22716459 TTGTGGCACTTTCGAGAAAGCGCCGGTAATGCTTTGACTTTTGCGGCTTTTTTTGCAAAGCGCCA
126 TTGTGGCACTTTCGAGAAAGCGCCGCTAATACTATGACTTTTGCGGCTTTCCTTACAAAGCGCCA
** * *
22716524 CTAATGTCTCTAATGCTCAACAGAAAAACGACGCCTTT
191 CTAATGTCTCTAAACCTCAACAGAAAAACGACGCCGTC
* ** * ** *
22716562 TGCTTAAAACTTTTTGCGGCGCTTTCCTTAAGCGCCGCTAATGTTTGACTTACGCGGCGTTTTAT
1 TGCTTAAAACTTTTT-AGGCGCTTTTGTAAAGCGCCGCTAATGTTTGACTTTTGCGGCGTTTTGT
* * * * * *
22716627 GTAAAGCGCCACTAATGTGTCTAAACCTCAACATGGAAACGACGTCGTTTG-ATAAAACTTTTGT
65 ATGAAGCGCCACTAATGTCTCTAAACCTCAACAAGAAAACGACGTCGTTTGCATAAAACTATTGT
* *
22716691 GGCGC-TTCGGAGAAAGCGCCGCTAATAC-ATGATCTTTTGCGGCGTTTCCTTATAAA-CGCCAC
130 GGCACTTTC-GAGAAAGCGCCGCTAATACTATGA-CTTTTGCGGC-TTTCCTTACAAAGCGCCAC
* *
22716753 TAATGTCTCTAAACCT-AA-A-ATAAAACGTCGTCGTC
192 TAATGTCTCTAAACCTCAACAGA-AAAACGACGCCGTC
* * *
22716788 TGTTTAACAGTTTTTAGGCGCTTTTGTAAAAGCGCCGCTAATGTTTGACTTTTGCGGCGTTTTGT
1 TGCTTAAAACTTTTTAGGCGCTTTTGT-AAAGCGCCGCTAATGTTTGACTTTTGCGGCGTTTTGT
* * * * *
22716853 TTGAAGCGCCACTAATGTCTTTGAAGCTCACCAAGAAAACGAC
65 ATGAAGCGCCACTAATGTCTCTAAACCTCAACAAGAAAACGAC
22716896 ACCGTTTACT
Statistics
Matches: 269, Mismatches: 56, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
225 10 0.04
226 90 0.33
227 8 0.03
228 62 0.23
229 79 0.29
230 20 0.07
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (228 bp):
TGCTTAAAACTTTTTAGGCGCTTTTGTAAAGCGCCGCTAATGTTTGACTTTTGCGGCGTTTTGTA
TGAAGCGCCACTAATGTCTCTAAACCTCAACAAGAAAACGACGTCGTTTGCATAAAACTATTGTG
GCACTTTCGAGAAAGCGCCGCTAATACTATGACTTTTGCGGCTTTCCTTACAAAGCGCCACTAAT
GTCTCTAAACCTCAACAGAAAAACGACGCCGTC
Found at i:22718796 original size:18 final size:18
Alignment explanation
Indices: 22718754--22718797 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
22718744 TTTTAAGGAG
*
22718754 ATTACAAATACAACTGCA
1 ATTACAAATACAACTACA
* * *
22718772 ATCACAAATACAATTATA
1 ATTACAAATACAACTACA
22718790 ATTACAAA
1 ATTACAAA
22718798 ATAAACATGT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.55, C:0.18, G:0.02, T:0.25
Consensus pattern (18 bp):
ATTACAAATACAACTACA
Found at i:22721292 original size:16 final size:14
Alignment explanation
Indices: 22721271--22721304 Score: 50
Period size: 16 Copynumber: 2.3 Consensus size: 14
22721261 TAAATTTATA
22721271 ATATGAAATTATAAT
1 ATATGAAA-TATAAT
22721286 CATATGAAATATAAT
1 -ATATGAAATATAAT
22721301 ATAT
1 ATAT
22721305 TATAACGTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 4 0.22
15 6 0.33
16 8 0.44
ACGTcount: A:0.53, C:0.03, G:0.06, T:0.38
Consensus pattern (14 bp):
ATATGAAATATAAT
Found at i:22721679 original size:31 final size:32
Alignment explanation
Indices: 22721627--22721697 Score: 101
Period size: 31 Copynumber: 2.2 Consensus size: 32
22721617 AATGAAGGAC
*
22721627 TTAATTATTATTATTTATTTTATG-AGGATTTAA
1 TTAATT-TTATTAATTATTTTA-GAAGGATTTAA
22721660 TTAATTTT-TTAATTATTTTAGAAGGATTTAA
1 TTAATTTTATTAATTATTTTAGAAGGATTTAA
22721691 TTAATTT
1 TTAATTT
22721698 CAGGGATTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
30 1 0.03
31 27 0.75
32 2 0.06
33 6 0.17
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (32 bp):
TTAATTTTATTAATTATTTTAGAAGGATTTAA
Found at i:22726916 original size:84 final size:84
Alignment explanation
Indices: 22726763--22726930 Score: 257
Period size: 83 Copynumber: 2.0 Consensus size: 84
22726753 GGATTGAAAT
* * * *
22726763 AGGTTCAGTATGAGACAGTATGACATATTTGACGGTACCTTGGGGTGGAGAATATGATGAGTTTG
1 AGGTTCAGTATGAGACAATATGACATATTTGACGGTACCATGGGGTGGAAAAGATGATGAGTTTG
22726828 TTTTTTCATAGTTTGAAGG
66 TTTTTTCATAGTTTGAAGG
* * *
22726847 AGGTTTAGTATGAGACAATATGACATGTTTGATGGTACCAT-GGGTGGAAAAGATGATGAGTTTG
1 AGGTTCAGTATGAGACAATATGACATATTTGACGGTACCATGGGGTGGAAAAGATGATGAGTTTG
*
22726911 TTTTTTCCTAGTTTGAAGG
66 TTTTTTCATAGTTTGAAGG
22726930 A
1 A
22726931 ATTATTTTTC
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
83 40 0.53
84 36 0.47
ACGTcount: A:0.27, C:0.08, G:0.29, T:0.36
Consensus pattern (84 bp):
AGGTTCAGTATGAGACAATATGACATATTTGACGGTACCATGGGGTGGAAAAGATGATGAGTTTG
TTTTTTCATAGTTTGAAGG
Found at i:22728037 original size:600 final size:600
Alignment explanation
Indices: 22726897--22728099 Score: 2406
Period size: 600 Copynumber: 2.0 Consensus size: 600
22726887 TGGGTGGAAA
22726897 AGATGATGAGTTTGTTTTTTCCTAGTTTGAAGGAATTATTTTTCTGCTTTACCACATCATTATTG
1 AGATGATGAGTTTGTTTTTTCCTAGTTTGAAGGAATTATTTTTCTGCTTTACCACATCATTATTG
22726962 ATATAAATGACTCTTGTTTTCTACCTCTGTTTCATAATTACAGTTGGATTGCCACTATAGTAACT
66 ATATAAATGACTCTTGTTTTCTACCTCTGTTTCATAATTACAGTTGGATTGCCACTATAGTAACT
22727027 TGTTTTGAACTGTCAATGCTGCAGGTTACATTCCTTGGAAGTACATAGAGGCTCAGAAATTTGTT
131 TGTTTTGAACTGTCAATGCTGCAGGTTACATTCCTTGGAAGTACATAGAGGCTCAGAAATTTGTT
22727092 CCCAATATGATTACTGTTTTAGTCTTAGTAAAAGAGCAGGGAGCCCAAAAGTCAAAATTTTCATG
196 CCCAATATGATTACTGTTTTAGTCTTAGTAAAAGAGCAGGGAGCCCAAAAGTCAAAATTTTCATG
22727157 AGACCACCTCGTTAGCACATGCCATTGCCAAGTAAGTATCATTGTCATCCACCTCAACGGAAAAC
261 AGACCACCTCGTTAGCACATGCCATTGCCAAGTAAGTATCATTGTCATCCACCTCAACGGAAAAC
22727222 CCTTGTAAACCATTTCATCTGTTACCTAGTATTGCATTTGTTAAATCATATTATAGAATTGGTCA
326 CCTTGTAAACCATTTCATCTGTTACCTAGTATTGCATTTGTTAAATCATATTATAGAATTGGTCA
22727287 TCCTGTCTCAAAAGACTAGAAACCTCCGGAGGGAGATAAATGACTCAGATTAACTTAGTTTCTTT
391 TCCTGTCTCAAAAGACTAGAAACCTCCGGAGGGAGATAAATGACTCAGATTAACTTAGTTTCTTT
22727352 TAAACCAAAAAATTTACATTGTATTTTCCCTTTCCTTTCATATTATGGTATAACTTAGAAACTCA
456 TAAACCAAAAAATTTACATTGTATTTTCCCTTTCCTTTCATATTATGGTATAACTTAGAAACTCA
22727417 AATATTTTACAAAATTAGCTTCAAATAAAAGGTTATTCTAAATTGTTAAAAAGATTTTATTGGAG
521 AATATTTTACAAAATTAGCTTCAAATAAAAGGTTATTCTAAATTGTTAAAAAGATTTTATTGGAG
22727482 TATTAATTAGTGTAT
586 TATTAATTAGTGTAT
22727497 AGATGATGAGTTTGTTTTTTCCTAGTTTGAAGGAATTATTTTTCTGCTTTACCACATCATTATTG
1 AGATGATGAGTTTGTTTTTTCCTAGTTTGAAGGAATTATTTTTCTGCTTTACCACATCATTATTG
22727562 ATATAAATGACTCTTGTTTTCTACCTCTGTTTCATAATTACAGTTGGATTGCCACTATAGTAACT
66 ATATAAATGACTCTTGTTTTCTACCTCTGTTTCATAATTACAGTTGGATTGCCACTATAGTAACT
22727627 TGTTTTGAACTGTCAATGCTGCAGGTTACATTCCTTGGAAGTACATAGAGGCTCAGAAATTTGTT
131 TGTTTTGAACTGTCAATGCTGCAGGTTACATTCCTTGGAAGTACATAGAGGCTCAGAAATTTGTT
22727692 CCCAATATGATTACTGTTTTAGTCTTAGTAAAAGAGCAGGGAGCCCAAAAGTCAAAATTTTCATG
196 CCCAATATGATTACTGTTTTAGTCTTAGTAAAAGAGCAGGGAGCCCAAAAGTCAAAATTTTCATG
22727757 AGACCACCTCGTTAGCACATGCCATTGCCAAGTAAGTATCATTGTCATCCACCTCAACGGAAAAC
261 AGACCACCTCGTTAGCACATGCCATTGCCAAGTAAGTATCATTGTCATCCACCTCAACGGAAAAC
22727822 CCTTGTAAACCATTTCATCTGTTACCTAGTATTGCATTTGTTAAATCATATTATAGAATTGGTCA
326 CCTTGTAAACCATTTCATCTGTTACCTAGTATTGCATTTGTTAAATCATATTATAGAATTGGTCA
22727887 TCCTGTCTCAAAAGACTAGAAACCTCCGGAGGGAGATAAATGACTCAGATTAACTTAGTTTCTTT
391 TCCTGTCTCAAAAGACTAGAAACCTCCGGAGGGAGATAAATGACTCAGATTAACTTAGTTTCTTT
22727952 TAAACCAAAAAATTTACATTGTATTTTCCCTTTCCTTTCATATTATGGTATAACTTAGAAACTCA
456 TAAACCAAAAAATTTACATTGTATTTTCCCTTTCCTTTCATATTATGGTATAACTTAGAAACTCA
22728017 AATATTTTACAAAATTAGCTTCAAATAAAAGGTTATTCTAAATTGTTAAAAAGATTTTATTGGAG
521 AATATTTTACAAAATTAGCTTCAAATAAAAGGTTATTCTAAATTGTTAAAAAGATTTTATTGGAG
22728082 TATTAATTAGTGTAT
586 TATTAATTAGTGTAT
22728097 AGA
1 AGA
22728100 GAACTAATAT
Statistics
Matches: 603, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
600 603 1.00
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (600 bp):
AGATGATGAGTTTGTTTTTTCCTAGTTTGAAGGAATTATTTTTCTGCTTTACCACATCATTATTG
ATATAAATGACTCTTGTTTTCTACCTCTGTTTCATAATTACAGTTGGATTGCCACTATAGTAACT
TGTTTTGAACTGTCAATGCTGCAGGTTACATTCCTTGGAAGTACATAGAGGCTCAGAAATTTGTT
CCCAATATGATTACTGTTTTAGTCTTAGTAAAAGAGCAGGGAGCCCAAAAGTCAAAATTTTCATG
AGACCACCTCGTTAGCACATGCCATTGCCAAGTAAGTATCATTGTCATCCACCTCAACGGAAAAC
CCTTGTAAACCATTTCATCTGTTACCTAGTATTGCATTTGTTAAATCATATTATAGAATTGGTCA
TCCTGTCTCAAAAGACTAGAAACCTCCGGAGGGAGATAAATGACTCAGATTAACTTAGTTTCTTT
TAAACCAAAAAATTTACATTGTATTTTCCCTTTCCTTTCATATTATGGTATAACTTAGAAACTCA
AATATTTTACAAAATTAGCTTCAAATAAAAGGTTATTCTAAATTGTTAAAAAGATTTTATTGGAG
TATTAATTAGTGTAT
Found at i:22730022 original size:21 final size:21
Alignment explanation
Indices: 22729996--22730037 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
22729986 ATACTTATCA
*
22729996 ACAATTAGACTAGTTTTTCAG
1 ACAATTAGAATAGTTTTTCAG
22730017 ACAATTAGAATAGTTTTTCAG
1 ACAATTAGAATAGTTTTTCAG
22730038 TTTTCTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (21 bp):
ACAATTAGAATAGTTTTTCAG
Found at i:22753318 original size:22 final size:24
Alignment explanation
Indices: 22753275--22753318 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
22753265 TGATAATATG
22753275 TTTTGATATAACAAATTAAAGTGT
1 TTTTGATATAACAAATTAAAGTGT
*
22753299 TTTTGA-ATAA-AAGTTAAAGT
1 TTTTGATATAACAAATTAAAGT
22753319 TGAACAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.43, C:0.02, G:0.14, T:0.41
Consensus pattern (24 bp):
TTTTGATATAACAAATTAAAGTGT
Found at i:22753385 original size:19 final size:20
Alignment explanation
Indices: 22753345--22753396 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
22753335 AAATTGATAA
*
22753345 AATTAAGTTAAAATAGTTTC
1 AATTCAGTTAAAATAGTTTC
*
22753365 AATTCAGTTAAAA-ATTTTC
1 AATTCAGTTAAAATAGTTTC
22753384 AA-TCATGTTAAAA
1 AATTCA-GTTAAAA
22753397 CTATTTTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 3 0.10
19 14 0.48
20 12 0.41
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (20 bp):
AATTCAGTTAAAATAGTTTC
Found at i:22758861 original size:10 final size:11
Alignment explanation
Indices: 22758793--22758879 Score: 72
Period size: 10 Copynumber: 7.6 Consensus size: 11
22758783 TAACACTATC
*
22758793 AATATTTTTAA
1 AATATTTTAAA
*
22758804 CATATTTCTAATA
1 AATATTT-TAA-A
22758817 GAAT-TTTTAAA
1 -AATATTTTAAA
22758828 AATATTTTAACA
1 AATATTTTAA-A
22758840 AATATATTTAAA
1 AATAT-TTTAAA
22758852 AA-ATTTTAAA
1 AATATTTTAAA
*
22758862 ACT-TTTTAAA
1 AATATTTTAAA
22758872 AATTATTT
1 AA-TATTT
22758880 GAAAGGTTAA
Statistics
Matches: 62, Mismatches: 5, Indels: 17
0.74 0.06 0.20
Matches are distributed among these distances:
10 18 0.29
11 16 0.26
12 17 0.27
13 9 0.15
14 2 0.03
ACGTcount: A:0.47, C:0.05, G:0.01, T:0.47
Consensus pattern (11 bp):
AATATTTTAAA
Found at i:22765755 original size:61 final size:62
Alignment explanation
Indices: 22765690--22766294 Score: 424
Period size: 61 Copynumber: 9.9 Consensus size: 62
22765680 TTTGATTGTT
* *
22765690 TTATATATTGCCG-AATTAATTTGTATATAATTATACATTGCTGAAATTAATTTGTATATGG
1 TTATACATTGCCGAAATTAATTTGTATATGATTATACATTGCTGAAATTAATTTGTATATGG
** *
22765751 TTATACATTGTTGAAATTGAA-TTGTATATGGA-TATA-AGTTGCTG-AATTAATTCGTATATGG
1 TTATACATTGCCGAAATT-AATTTGTATAT-GATTATACA-TTGCTGAAATTAATTTGTATATGG
* * * * * * * *
22765812 TTGTACATTACTGAAATTTATTTGTATATGGTTATACATT-ATCGAAATTGATTTGTATATGA
1 TTATACATTGCCGAAATTAATTTGTATATGATTATACATTGCT-GAAATTAATTTGTATATGG
** * * * * *
22765874 AGATA-AGTTTCCG-AATTGATTTATATATGATTATACTTTGCTGAATTTAATTTGTATATGG
1 TTATACA-TTGCCGAAATTAATTTGTATATGATTATACATTGCTGAAATTAATTTGTATATGG
** *
22765935 TTATACATTGTTGAAATTGAA-TTGTATATGGA-TATA-AGTTGCTG-AATTAATTCGTATATGG
1 TTATACATTGCCGAAATT-AATTTGTATAT-GATTATACA-TTGCTGAAATTAATTTGTATATGG
* * * * * * * *
22765996 TTGTACATTACTGAAATTTATTTGTATATGGTTATACATT-ATCGAAATTGATTTGTATATGA
1 TTATACATTGCCGAAATTAATTTGTATATGATTATACATTGCT-GAAATTAATTTGTATATGG
** * * * * *
22766058 AGATA-AGTTTCCG-AATTGATTTATATATGATTATACTTTGCTGAATTTAATTTGTATATGG
1 TTATACA-TTGCCGAAATTAATTTGTATATGATTATACATTGCTGAAATTAATTTGTATATGG
** * * *
22766119 TTATACATTGTTGAAATTGAA-TTGTATATGGA-TATA-AGTTGCCG-AATTAATTCGTATATGA
1 TTATACATTGCCGAAATT-AATTTGTATAT-GATTATACA-TTGCTGAAATTAATTTGTATATGG
* * ** * * * *
22766180 TTATACATTGCCGAACTTGATTCATATATGGTTATACATTGC-CAAATTGATTTGTATATGA
1 TTATACATTGCCGAAATTAATTTGTATATGATTATACATTGCTGAAATTAATTTGTATATGG
* * * * * * *
22766241 TTATACATTGCCGAATTTGATTCGTATATGAATATATATTGTTG-AATTGATTTG
1 TTATACATTGCCGAAATTAATTTGTATATGATTATACATTGCTGAAATTAATTTG
22766295 AGCATTGGAT
Statistics
Matches: 423, Mismatches: 88, Indels: 66
0.73 0.15 0.11
Matches are distributed among these distances:
60 8 0.02
61 296 0.70
62 110 0.26
63 9 0.02
ACGTcount: A:0.32, C:0.07, G:0.16, T:0.44
Consensus pattern (62 bp):
TTATACATTGCCGAAATTAATTTGTATATGATTATACATTGCTGAAATTAATTTGTATATGG
Found at i:22765808 original size:92 final size:92
Alignment explanation
Indices: 22765697--22766294 Score: 718
Period size: 92 Copynumber: 6.5 Consensus size: 92
22765687 GTTTTATATA
* *
22765697 TTGCCGAATTAATTTGTATATAATTATACATTGCTGAAATTAATTTGTATATGGTTATACATTGT
1 TTGCCGAATTAATTCGTATATGATTATACATTGCTGAAATTAATTTGTATATGGTTATACATTGT
*
22765762 TGAAATTGAATTGTATATGGATATAAG
66 CGAAATTGAATTGTATATGGATATAAG
* * * * * *
22765789 TTGCTGAATTAATTCGTATATGGTTGTACATTACTGAAATTTATTTGTATATGGTTATACATTAT
1 TTGCCGAATTAATTCGTATATGATTATACATTGCTGAAATTAATTTGTATATGGTTATACATTGT
* * *
22765854 CGAAATTGATTTGTATATGAAGATAAG
66 CGAAATTGAATTGTATATGGATATAAG
* * ** * *
22765881 TTTCCGAATTGATTTATATATGATTATACTTTGCTGAATTTAATTTGTATATGGTTATACATTGT
1 TTGCCGAATTAATTCGTATATGATTATACATTGCTGAAATTAATTTGTATATGGTTATACATTGT
*
22765946 TGAAATTGAATTGTATATGGATATAAG
66 CGAAATTGAATTGTATATGGATATAAG
* * * * * *
22765973 TTGCTGAATTAATTCGTATATGGTTGTACATTACTGAAATTTATTTGTATATGGTTATACATTAT
1 TTGCCGAATTAATTCGTATATGATTATACATTGCTGAAATTAATTTGTATATGGTTATACATTGT
* * *
22766038 CGAAATTGATTTGTATATGAAGATAAG
66 CGAAATTGAATTGTATATGGATATAAG
* * ** * *
22766065 TTTCCGAATTGATTTATATATGATTATACTTTGCTGAATTTAATTTGTATATGGTTATACATTGT
1 TTGCCGAATTAATTCGTATATGATTATACATTGCTGAAATTAATTTGTATATGGTTATACATTGT
*
22766130 TGAAATTGAATTGTATATGGATATAAG
66 CGAAATTGAATTGTATATGGATATAAG
* * * **
22766157 TTGCCGAATTAATTCGTATATGATTATACATTGCCGAACTTGATTCATATATGGTTATACATTG-
1 TTGCCGAATTAATTCGTATATGATTATACATTGCTGAAATTAATTTGTATATGGTTATACATTGT
* *
22766221 CCAAATTGATTTGTATAT-GATTATACA-
66 CGAAATTGAATTGTATATGGA-TATA-AG
* * * * *
22766248 TTGCCGAATTTGATTCGTATATGAATATATATTGTTG-AATTGATTTG
1 TTGCCGAA-TTAATTCGTATATGATTATACATTGCTGAAATTAATTTG
22766295 AGCATTGGAT
Statistics
Matches: 422, Mismatches: 81, Indels: 7
0.83 0.16 0.01
Matches are distributed among these distances:
90 2 0.00
91 34 0.08
92 386 0.91
ACGTcount: A:0.32, C:0.07, G:0.17, T:0.44
Consensus pattern (92 bp):
TTGCCGAATTAATTCGTATATGATTATACATTGCTGAAATTAATTTGTATATGGTTATACATTGT
CGAAATTGAATTGTATATGGATATAAG
Found at i:22766009 original size:184 final size:184
Alignment explanation
Indices: 22765700--22766240 Score: 931
Period size: 184 Copynumber: 2.9 Consensus size: 184
22765690 TTATATATTG
* * * * *
22765700 CCGAATTAATTTGTATATAATTATACATTGCTGAAATTAATTTGTATATGGTTATACATTGTTGA
1 CCGAATTGATTTATATATGATTATACTTTGCTGAATTTAATTTGTATATGGTTATACATTGTTGA
22765765 AATTGAATTGTATATGGATATAAGTTGCTGAATTAATTCGTATATGGTTGTACATTACTGAAATT
66 AATTGAATTGTATATGGATATAAGTTGCTGAATTAATTCGTATATGGTTGTACATTACTGAAATT
22765830 TATTTGTATATGGTTATACATTATCGAAATTGATTTGTATATGAAGATAAGTTT
131 TATTTGTATATGGTTATACATTATCGAAATTGATTTGTATATGAAGATAAGTTT
22765884 CCGAATTGATTTATATATGATTATACTTTGCTGAATTTAATTTGTATATGGTTATACATTGTTGA
1 CCGAATTGATTTATATATGATTATACTTTGCTGAATTTAATTTGTATATGGTTATACATTGTTGA
22765949 AATTGAATTGTATATGGATATAAGTTGCTGAATTAATTCGTATATGGTTGTACATTACTGAAATT
66 AATTGAATTGTATATGGATATAAGTTGCTGAATTAATTCGTATATGGTTGTACATTACTGAAATT
22766014 TATTTGTATATGGTTATACATTATCGAAATTGATTTGTATATGAAGATAAGTTT
131 TATTTGTATATGGTTATACATTATCGAAATTGATTTGTATATGAAGATAAGTTT
22766068 CCGAATTGATTTATATATGATTATACTTTGCTGAATTTAATTTGTATATGGTTATACATTGTTGA
1 CCGAATTGATTTATATATGATTATACTTTGCTGAATTTAATTTGTATATGGTTATACATTGTTGA
* * * * * *
22766133 AATTGAATTGTATATGGATATAAGTTGCCGAATTAATTCGTATATGATTATACATTGCCGAACTT
66 AATTGAATTGTATATGGATATAAGTTGCTGAATTAATTCGTATATGGTTGTACATTACTGAAATT
* ** * *
22766198 GATTCATATATGGTTATACATT-GCCAAATTGATTTGTATATGA
131 TATTTGTATATGGTTATACATTATCGAAATTGATTTGTATATGA
22766241 TTATACATTG
Statistics
Matches: 341, Mismatches: 16, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
183 19 0.06
184 322 0.94
ACGTcount: A:0.33, C:0.07, G:0.16, T:0.44
Consensus pattern (184 bp):
CCGAATTGATTTATATATGATTATACTTTGCTGAATTTAATTTGTATATGGTTATACATTGTTGA
AATTGAATTGTATATGGATATAAGTTGCTGAATTAATTCGTATATGGTTGTACATTACTGAAATT
TATTTGTATATGGTTATACATTATCGAAATTGATTTGTATATGAAGATAAGTTT
Found at i:22774537 original size:13 final size:13
Alignment explanation
Indices: 22774508--22774577 Score: 51
Period size: 13 Copynumber: 5.5 Consensus size: 13
22774498 TGTACACGTA
*
22774508 AATAATAATTGAA-
1 AATAATAAAT-AAT
22774521 AATAATAAATAAT
1 AATAATAAATAAT
* *
22774534 AATAAAAAACAAGT
1 AATAATAAATAA-T
22774548 -ATAAT--ATAAT
1 AATAATAAATAAT
22774558 AATAATAAAATAAT
1 AATAAT-AAATAAT
22774572 AA-AATA
1 AATAATA
22774578 GTTCAAAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 13
0.72 0.08 0.20
Matches are distributed among these distances:
10 1 0.02
11 8 0.17
12 3 0.07
13 26 0.57
14 8 0.17
ACGTcount: A:0.69, C:0.01, G:0.03, T:0.27
Consensus pattern (13 bp):
AATAATAAATAAT
Found at i:22774564 original size:11 final size:11
Alignment explanation
Indices: 22774507--22774577 Score: 51
Period size: 11 Copynumber: 6.5 Consensus size: 11
22774497 ATGTACACGT
22774507 AAATAATAATTGA
1 AAATAATAA-T-A
22774520 AAATAATAA-A
1 AAATAATAATA
*
22774530 TAATAATAA-A
1 AAATAATAATA
*
22774540 AAACAAGT-ATA
1 AAATAA-TAATA
*
22774551 ATATAATAATA
1 AAATAATAATA
22774562 ATAA-AATAATA
1 A-AATAATAATA
22774573 AAATA
1 AAATA
22774578 GTTCAAAAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 12
0.72 0.09 0.18
Matches are distributed among these distances:
10 18 0.38
11 19 0.40
12 1 0.02
13 9 0.19
ACGTcount: A:0.69, C:0.01, G:0.03, T:0.27
Consensus pattern (11 bp):
AAATAATAATA
Found at i:22774577 original size:24 final size:23
Alignment explanation
Indices: 22774508--22774574 Score: 68
Period size: 23 Copynumber: 2.9 Consensus size: 23
22774498 TGTACACGTA
22774508 AATAATAATTGAAAATAAT-AA-AT
1 AATAATAA-T-AAAATAATAAATAT
*
22774531 AATAATAA-AAAACAAGTATAATAT
1 AATAATAATAAAATAA-TA-AATAT
22774555 AATAATAATAAAATAATAAA
1 AATAATAATAAAATAATAAA
22774575 ATAGTTCAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
20 6 0.16
21 1 0.03
23 12 0.32
24 12 0.32
25 6 0.16
ACGTcount: A:0.69, C:0.01, G:0.03, T:0.27
Consensus pattern (23 bp):
AATAATAATAAAATAATAAATAT
Found at i:22774883 original size:83 final size:84
Alignment explanation
Indices: 22774777--22774943 Score: 327
Period size: 83 Copynumber: 2.0 Consensus size: 84
22774767 AAAACAAAAC
22774777 AAGTTGATTGAAATGCGCTGCAAACAGGAGGGGGCAATTGCGCAAATATCCCCCAAGATTCAAAA
1 AAGTTGATTGAAATGCGCTGCAAACAGGAGGGGGCAATTGCGCAAATATCCCCCAAGATTCAAAA
22774842 CGCGCGGATCCTCCCCGGG
66 CGCGCGGATCCTCCCCGGG
22774861 AAGTTGATTG-AATGCGCTGCAAACAGGAGGGGGCAATTGCGCAAATATCCCCCAAGATTCAAAA
1 AAGTTGATTGAAATGCGCTGCAAACAGGAGGGGGCAATTGCGCAAATATCCCCCAAGATTCAAAA
22774925 CGCGCGGATCCTCCCCGGG
66 CGCGCGGATCCTCCCCGGG
22774944 TCGGGTCAAC
Statistics
Matches: 83, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
83 73 0.88
84 10 0.12
ACGTcount: A:0.29, C:0.26, G:0.28, T:0.17
Consensus pattern (84 bp):
AAGTTGATTGAAATGCGCTGCAAACAGGAGGGGGCAATTGCGCAAATATCCCCCAAGATTCAAAA
CGCGCGGATCCTCCCCGGG
Found at i:22776369 original size:132 final size:132
Alignment explanation
Indices: 22776185--22776557 Score: 527
Period size: 132 Copynumber: 2.8 Consensus size: 132
22776175 CTGCTTTTTC
* * * * *
22776185 CAATCGATTCCACTGCCGACCAGGGGAA-TTGAATTACTGGCTTCAATATACTCCACTGCAACCT
1 CAATCTATTCCACTGCTGCCCA-GGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGCAACCT
* * ** * *
22776249 CAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCACTACTGCTTAGGGAGATAAGATCTGTAAT
65 CAGGGAGGTAAAATCTACCATCTTTGATCTGCTCCACTACTGCTTAAAGAGACAAGATCTGAAAT
22776314 CTT
130 CTT
* * *
22776317 CACTCTATTCCACTGTTGCCCAGGG-AGATAGAATTACTGTCTTCAATGTACTCCACTGCAACCT
1 CAATCTATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGCAACCT
*
22776381 CAGGGAGGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAAAGAGACAAGATCTGAAAT
65 CAGGGAGGTAAAATCTACCATCTTTGATCTGCTCCACTACTGCTTAAAGAGACAAGATCTGAAAT
22776446 CTT
130 CTT
* * *
22776449 CAATCTATTCCGCTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCAC
1 CAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGCAACCTC
*
22776514 AAGGAGGTAAAAT-TCACCATCTTTGATCTGCTCCACTACTGCTT
66 AGGGAGGTAAAATCT-ACCATCTTTGATCTGCTCCACTACTGCTT
22776558 NNNNNNNNNN
Statistics
Matches: 214, Mismatches: 23, Indels: 8
0.87 0.09 0.03
Matches are distributed among these distances:
130 1 0.00
131 3 0.01
132 208 0.97
133 2 0.01
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (132 bp):
CAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGCAACCTC
AGGGAGGTAAAATCTACCATCTTTGATCTGCTCCACTACTGCTTAAAGAGACAAGATCTGAAATC
TT
Found at i:22784340 original size:8 final size:8
Alignment explanation
Indices: 22784298--22784353 Score: 51
Period size: 8 Copynumber: 6.8 Consensus size: 8
22784288 ATAATAATTG
22784298 AAAATAAT
1 AAAATAAT
22784306 AAATAATAAT
1 -AA-AATAAT
*
22784316 AAAA-AAC
1 AAAATAAT
*
22784323 AAGTATAAT
1 AA-AATAAT
*
22784332 ATAATAAT
1 AAAATAAT
22784340 AAAATAAT
1 AAAATAAT
22784348 AAAATA
1 AAAATA
22784354 GTTCAAAAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
7 4 0.11
8 21 0.55
9 7 0.18
10 6 0.16
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.25
Consensus pattern (8 bp):
AAAATAAT
Found at i:22784971 original size:25 final size:23
Alignment explanation
Indices: 22784943--22784995 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
22784933 GAAAAAAATG
* *
22784943 TAAAAACGATAAACACTTTTAACAA
1 TAAAAAAGA-AAACACCTTTAA-AA
*
22784968 TAAAAAAGAAATCACCTTTAAAA
1 TAAAAAAGAAAACACCTTTAAAA
22784991 TAAAA
1 TAAAA
22784996 CAAGTTTTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 7 0.28
24 10 0.40
25 8 0.32
ACGTcount: A:0.60, C:0.13, G:0.04, T:0.23
Consensus pattern (23 bp):
TAAAAAAGAAAACACCTTTAAAA
Found at i:22786943 original size:57 final size:57
Alignment explanation
Indices: 22786877--22787003 Score: 211
Period size: 57 Copynumber: 2.2 Consensus size: 57
22786867 CCATATTCAG
22786877 ACTC-GTCAGCCTTGTCTCTTCTTGCTGTCAAACAACAATTATCATCTTTAGACGTC
1 ACTCGGTCAGCCTTGTCTCTTCTTGCTGTCAAACAACAATTATCATCTTTAGACGTC
* * *
22786933 ACTTGGTCAGCCTCGTCTCTTCTTGCTGTCAAACAACAATTATCATCTTTAGAGGTC
1 ACTCGGTCAGCCTTGTCTCTTCTTGCTGTCAAACAACAATTATCATCTTTAGACGTC
*
22786990 ACTCGGTCATCCTT
1 ACTCGGTCAGCCTT
22787004 CAATCTAATA
Statistics
Matches: 64, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
56 3 0.05
57 61 0.95
ACGTcount: A:0.22, C:0.28, G:0.14, T:0.35
Consensus pattern (57 bp):
ACTCGGTCAGCCTTGTCTCTTCTTGCTGTCAAACAACAATTATCATCTTTAGACGTC
Found at i:22794939 original size:326 final size:334
Alignment explanation
Indices: 22794334--22794986 Score: 792
Period size: 326 Copynumber: 2.0 Consensus size: 334
22794324 TAAGCCATTA
* * ** *
22794334 TAATTTCTTTCAATTTTTGCATTTTCCAGCATATCTTGGTTATTCAAGTAACTGGAAACTTAACT
1 TAATTTCTTTCAATTTTTGCATTTTCCAGCATATCTTAGTGATTCAAACAACTGAAAACTTAACT
* *
22794399 CTTCATGTACCATCACTTTTTTAGAATTAATAAAAGGAAAAAAAGAAGCAAGGCATTTGAGTTCA
66 CTTCATGTACCATCACTTTTTTAAAATTAATAAAAGGAAAAAAAGAAGC-A-CCATTTGAGTTCA
** * * * * ** *
22794464 GAGGATGCTTACTATTTTCCATTTCAGTACTTTAGCCCTACATTTCTGTTTTTACAAAGTGACCA
129 GAAAATGCTTACTATATTCC--TTCAGTACTTTAGCCCTAAATGTCCGCCTTTACAAAGTGACAA
22794529 TTTTGAAGAACAAGTACAGACAATGAATGTCAGAGCCACTCAACAAAGATAATATGCTAATAATC
192 TTTTGAAGAACAAGTACAGACAATGAATGTCAGAGCCACTCAACAAAGATAATATGCTAATAATC
* * *
22794594 TAATTTATAATGATAA-TTTTTCCTATTGA-ACTAACAATTTTGCATAATTGAGTTTAATGTAGA
257 TAATGTATAATGATAATTTTTTCC-ATT-ACACTAAAAATTTTGCATAATTGAGTTCAATGTAGA
22794657 TTAACATAGCAAATC
320 TTAACATAGCAAATC
*
22794672 TAATTTCTTTCACTTTTTGCATTTT-CAGCATATCTTAGTGATTCAAACAACTGAAAACTT-ACA
1 TAATTTCTTTCAATTTTTGCATTTTCCAGCATATCTTAGTGATTCAAACAACTGAAAACTTAAC-
*
22794735 TCTTCATGTACCA-C-TTTTTTTAAAATTAATAAAAGGAAAAAAA-AA-C-CCATTTGAGTTCAG
65 TCTTCATGTACCATCACTTTTTTAAAATTAATAAAAGGAAAAAAAGAAGCACCATTTGAGTTCAG
* * * * **
22794795 AAAACT-TTTAGTATATT-C-TCAGTATTTTAGCCTTAAATGTCCGCCTTTACAAAGTGGTAATT
130 AAAA-TGCTTACTATATTCCTTCAGTACTTTAGCCCTAAATGTCCGCCTTTACAAAGTGACAA-T
* * ** * *
22794857 TTTGAAGAACAAGTATAGCCAATGAATGTTGGTG-GACTCAACAAAGATAATATGCTAATAATCT
193 TTTGAAGAACAAGTACAGACAATGAATGTCAGAGCCACTCAACAAAGATAATATGCTAATAATCT
* * * * *
22794921 AATGTATTATGATAATTTTTTCCATTACATTAAAAATTTTTCATAGTTGAGTTCATTGTAGATTA
258 AATGTATAATGATAATTTTTTCCATTACACTAAAAATTTTGCATAATTGAGTTCAATGTAGATTA
22794986 A
323 A
22794987 TTCACTTTTT
Statistics
Matches: 272, Mismatches: 38, Indels: 22
0.82 0.11 0.07
Matches are distributed among these distances:
325 1 0.00
326 109 0.40
327 37 0.14
329 1 0.00
330 23 0.08
331 1 0.00
333 1 0.00
334 2 0.01
335 27 0.10
336 3 0.01
337 43 0.16
338 24 0.09
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.37
Consensus pattern (334 bp):
TAATTTCTTTCAATTTTTGCATTTTCCAGCATATCTTAGTGATTCAAACAACTGAAAACTTAACT
CTTCATGTACCATCACTTTTTTAAAATTAATAAAAGGAAAAAAAGAAGCACCATTTGAGTTCAGA
AAATGCTTACTATATTCCTTCAGTACTTTAGCCCTAAATGTCCGCCTTTACAAAGTGACAATTTT
GAAGAACAAGTACAGACAATGAATGTCAGAGCCACTCAACAAAGATAATATGCTAATAATCTAAT
GTATAATGATAATTTTTTCCATTACACTAAAAATTTTGCATAATTGAGTTCAATGTAGATTAACA
TAGCAAATC
Found at i:22798064 original size:2 final size:2
Alignment explanation
Indices: 22798059--22798106 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
22798049 CAAAAAATAT
22798059 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
22798101 GA GA GA
1 GA GA GA
22798107 ATCCCAATAG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:22798679 original size:17 final size:16
Alignment explanation
Indices: 22798652--22798694 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
22798642 TAAAAAAATT
22798652 AATATTAAATTTTATATAA
1 AATA-TAAATTTTA-A-AA
22798671 AA-ATAAATTTTAAAA
1 AATATAAATTTTAAAA
22798686 AATATAAAT
1 AATATAAAT
22798695 ACATCAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
15 4 0.17
16 7 0.30
17 9 0.39
18 1 0.04
19 2 0.09
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
AATATAAATTTTAAAA
Found at i:22805770 original size:18 final size:18
Alignment explanation
Indices: 22805735--22805779 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
22805725 GTAATAAGTG
*
22805735 ACGTTTTGAAAATTAATA
1 ACGTTTTGAAAATGAATA
22805753 ACGTTTTGAAAGA-GAATA
1 ACGTTTTGAAA-ATGAATA
22805771 AC-TTTTGAA
1 ACGTTTTGAA
22805780 TACGAATCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 7 0.28
18 17 0.68
19 1 0.04
ACGTcount: A:0.42, C:0.07, G:0.16, T:0.36
Consensus pattern (18 bp):
ACGTTTTGAAAATGAATA
Found at i:22808776 original size:85 final size:85
Alignment explanation
Indices: 22808669--22808836 Score: 257
Period size: 85 Copynumber: 2.0 Consensus size: 85
22808659 TTGTACCTTT
*
22808669 AATCTGATCCACTGCAACTTCAAAGAGATAAGATTTGTAGCTTTAATCTGCTCCACTGTAA-TAT
1 AATCTGATCCACTGCAACTTCAAAGAGATAAGATTTGTAGCTTCAATCTGCTCCACTGTAACT-T
**
22808733 CAGAGAGGTAAGATTCGCTTC
65 CAGAGAAATAAGATTCGCTTC
* * *
22808754 AATCTGCTCCACTGCAATTTCAAGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTGTAACTTC
1 AATCTGATCCACTGCAACTTCAAAGAGATAAGATTTGTAGCTTCAATCTGCTCCACTGTAACTTC
*
22808819 AGGGAAATAAGATTCGCT
66 AGAGAAATAAGATTCGCT
22808837 ATGGTAGATT
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
85 74 0.99
86 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (85 bp):
AATCTGATCCACTGCAACTTCAAAGAGATAAGATTTGTAGCTTCAATCTGCTCCACTGTAACTTC
AGAGAAATAAGATTCGCTTC
Found at i:22808829 original size:44 final size:44
Alignment explanation
Indices: 22808615--22808970 Score: 267
Period size: 44 Copynumber: 8.0 Consensus size: 44
22808605 GATATATTAG
* * * ** *
22808615 TTGTAGCCTC-ATCTTGCCCCACTACAACTTTTGGGAGATAAGGT
1 TTGTAGCTTCAATC-TGCTCCACTGCAACTTCAGGGAGATAAGAT
* * * **
22808659 TTGTACCTTTAATCTGATCCACTGCAACTTCAAAGAGATAAGAT
1 TTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
* * * *
22808703 TTGTAGCTTTAATCTGCTCCACTGTAA-TATCAGAGAGGTAAGA-
1 TTGTAGCTTCAATCTGCTCCACTGCAACT-TCAGGGAGATAAGAT
* * *
22808746 -T-TCGCTTCAATCTGCTCCACTGCAATTTCAAGGAGATAAGAT
1 TTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
* *
22808788 TTGTAGCTTCAATCTGCTCCACTGTAACTTCAGGGAAATAAGATT
1 TTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-T
* ** * * *
22808833 CGCTATGGTAGATTCAATCCAAC-CCACTACAACTTTAGGG-GTATATGAT
1 ---T-T-GTAGCTTCAAT-CTGCTCCACTGCAACTTCAGGGAG-ATAAGAT
* *
22808882 TTGTAGTTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGAT
1 TTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
** * * * *
22808926 TCATAGCTTCAATCTACTCCACTACAACCTCAGAGAGATAAGAT
1 TTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
22808970 T
1 T
22808971 CGCTATGGTA
Statistics
Matches: 250, Mismatches: 46, Indels: 32
0.76 0.14 0.10
Matches are distributed among these distances:
41 32 0.13
42 2 0.01
43 5 0.02
44 170 0.68
45 6 0.02
46 1 0.00
48 1 0.00
49 2 0.01
50 29 0.12
51 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (44 bp):
TTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
Found at i:22809021 original size:138 final size:138
Alignment explanation
Indices: 22808751--22809030 Score: 337
Period size: 138 Copynumber: 2.0 Consensus size: 138
22808741 TAAGATTCGC
* * ** * **
22808751 TTCAATCTGCTCCACTGCAATTTCAAGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTGTAAC
1 TTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATTCATAGCTTCAATCTACTCCACTACAAC
* * * * * * *
22808816 TTCAGGGAAATAAGATTCGCTATGGTAGATTCAATCCAACCCACTACAACTTTAGGGGTATATGA
66 CTCAGAGAAATAAGATTCGCTATGGTAGATTAAACCCAACCCACTACAACTTCAGAGGTATAAGA
22808881 TTTGTAGT
131 TTTGTAGT
*
22808889 TTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTCATAGCTTCAATCTACTCCACTACAAC
1 TTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATTCATAGCTTCAATCTACTCCACTACAAC
* ** * * *
22808954 CTCAGAGAGATAAGATTCGCTATGGTA-ATTTAAACCCGGCCTACTGCAACTTCAGAGGTGTAAG
66 CTCAGAGAAATAAGATTCGCTATGGTAGA-TTAAACCCAACCCACTACAACTTCAGAGGTATAAG
* *
22809018 ATTTTTGGT
130 ATTTGTAGT
22809027 TTCA
1 TTCA
22809031 CTAATCTGTT
Statistics
Matches: 118, Mismatches: 23, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
137 1 0.01
138 117 0.99
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (138 bp):
TTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATTCATAGCTTCAATCTACTCCACTACAAC
CTCAGAGAAATAAGATTCGCTATGGTAGATTAAACCCAACCCACTACAACTTCAGAGGTATAAGA
TTTGTAGT
Found at i:22825051 original size:52 final size:50
Alignment explanation
Indices: 22824970--22825073 Score: 163
Period size: 52 Copynumber: 2.0 Consensus size: 50
22824960 AGTATGCCCT
*
22824970 TTTTCATAAGAATCTCATATATAATGGATTACAATGCAATTAAAATCCGG
1 TTTTCATAAGAATCTCATATATAACGGATTACAATGCAATTAAAATCCGG
* *
22825020 TTTTCATAAGAATATCTCATATATAACGGATTACAGTGCATTTAAAATCCGG
1 TTTTCATAAG-A-ATCTCATATATAACGGATTACAATGCAATTAAAATCCGG
22825072 TT
1 TT
22825074 AAGTTCTTCA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
50 10 0.20
51 1 0.02
52 38 0.78
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (50 bp):
TTTTCATAAGAATCTCATATATAACGGATTACAATGCAATTAAAATCCGG
Found at i:22833673 original size:31 final size:31
Alignment explanation
Indices: 22833635--22833697 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
22833625 TAGAAACTTA
22833635 AACCAATTCCCAACGTTGAAGTTGTTGAAAT
1 AACCAATTCCCAACGTTGAAGTTGTTGAAAT
22833666 AACCAATTCCCAACGTTGAAGTTGTTGAAAT
1 AACCAATTCCCAACGTTGAAGTTGTTGAAAT
22833697 A
1 A
22833698 GCAATGTCAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.29
Consensus pattern (31 bp):
AACCAATTCCCAACGTTGAAGTTGTTGAAAT
Found at i:22838519 original size:387 final size:387
Alignment explanation
Indices: 22837805--22838580 Score: 1453
Period size: 387 Copynumber: 2.0 Consensus size: 387
22837795 AGTAAAGCAG
22837805 CTATTATACTTTTAGTTGTGTACGTTAATGATATTGTTATTACTGCTAGTAAGAATGAAGGTATC
1 CTATTATACTTTTAGTTGTGTACGTTAATGATATTGTTATTACTGCTAGTAAGAATGAAGGTATC
* *
22837870 TAAGCTCTCAGATCTGTTCTTCAGACATTTTCAGATGAAAGACTTGGGTATGTCAAAACATATTC
66 TAAGCTCTCAAATCTGTTCTTCAGACATTTTCAGATGAAAGACTTGGATATGTCAAAACATATTC
22837935 TTACTTCTGGACAAATACAAAACAGTTGGGTGCTAAATCTTGTAGTGTACCAGTGATAAGATCAC
131 TTACTTCTGGACAAATACAAAACAGTTGGGTGCTAAATCTTGTAGTGTACCAGTGATAAGATCAC
*
22838000 AAGCGAGTCAGAAAGTAAGCAAAAGATTTTAATAAGAACATAGATGGCTTTCAAGAACATGATTA
196 AAGCGAGTCAAAAAGTAAGCAAAAGATTTTAATAAGAACATAGATGGCTTTCAAGAACATGATTA
22838065 GATAAACAAATGCTAATAATCACACAAGATAAACCACCAAAGAAATACTTAAAGAACCACTAAGA
261 GATAAACAAATGCTAATAATCACACAAGATAAACCACCAAAGAAATACTTAAAGAACCACTAAGA
22838130 ACTATTATACCTACGAACACTTGATTCTTCTGTCTCAAAAAGCATTCTGAAACGCATCCCAA
326 ACTATTATACCTACGAACACTTGATTCTTCTGTCTCAAAAAGCATTCTGAAACGCATCCCAA
*
22838192 CTATTATACTTTTAGTTGTGTATGTTAATGATATTGTTATTACTGCTAGTAAGAATGAAGGTATC
1 CTATTATACTTTTAGTTGTGTACGTTAATGATATTGTTATTACTGCTAGTAAGAATGAAGGTATC
22838257 TAAGCTCTCAAATCTGTTCTTCAGACATTTTCAGATGAAAGACTTGGATATGTCAAAACATATTC
66 TAAGCTCTCAAATCTGTTCTTCAGACATTTTCAGATGAAAGACTTGGATATGTCAAAACATATTC
* *
22838322 TTACTTTTGGACAAATACAAAACAGTTGGGTGCTAAATCTTGTAGTGTACCAGTGATAAGCTCAC
131 TTACTTCTGGACAAATACAAAACAGTTGGGTGCTAAATCTTGTAGTGTACCAGTGATAAGATCAC
*
22838387 AAGCGAGTCAAAAAGTAAGCAAAAGATTTTAATAAGAATATAGATGGCTTTCAAGAACATGATTA
196 AAGCGAGTCAAAAAGTAAGCAAAAGATTTTAATAAGAACATAGATGGCTTTCAAGAACATGATTA
* * * *
22838452 TATAAACAAATGCTAATAATCACACGAGATAAACCACCAAAGAAATACTTAATGAACCGCTAAGA
261 GATAAACAAATGCTAATAATCACACAAGATAAACCACCAAAGAAATACTTAAAGAACCACTAAGA
22838517 ACTATTATACCTACGAACACTTGATTCTTCTGTCTCAAAAAGCATTCTGAAACGCATCCCAA
326 ACTATTATACCTACGAACACTTGATTCTTCTGTCTCAAAAAGCATTCTGAAACGCATCCCAA
22838579 CT
1 CT
22838581 GAAACACGTG
Statistics
Matches: 378, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
387 378 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (387 bp):
CTATTATACTTTTAGTTGTGTACGTTAATGATATTGTTATTACTGCTAGTAAGAATGAAGGTATC
TAAGCTCTCAAATCTGTTCTTCAGACATTTTCAGATGAAAGACTTGGATATGTCAAAACATATTC
TTACTTCTGGACAAATACAAAACAGTTGGGTGCTAAATCTTGTAGTGTACCAGTGATAAGATCAC
AAGCGAGTCAAAAAGTAAGCAAAAGATTTTAATAAGAACATAGATGGCTTTCAAGAACATGATTA
GATAAACAAATGCTAATAATCACACAAGATAAACCACCAAAGAAATACTTAAAGAACCACTAAGA
ACTATTATACCTACGAACACTTGATTCTTCTGTCTCAAAAAGCATTCTGAAACGCATCCCAA
Found at i:22854893 original size:51 final size:50
Alignment explanation
Indices: 22854837--22854992 Score: 195
Period size: 51 Copynumber: 3.1 Consensus size: 50
22854827 CACACCCTTA
*
22854837 TGATCAATGCTATTCAGTACACATAGTAGCGTACACTTAGTACTACACATG
1 TGATCAATGCTATCCAGTACACATAGTAGC-TACACTTAGTACTACACATG
* * * *
22854888 TGATCAATACCATCCAGTACACATAGTAGCTAGCACATAGTACTACGCATG
1 TGATCAATGCTATCCAGTACACATAGTAGCTA-CACTTAGTACTACACATG
* * * * *
22854939 TGACCAAAGCTATCCGGTACACATAGTAGCCTGCACTTAGTACTACAAATG
1 TGATCAATGCTATCCAGTACACATAGTAG-CTACACTTAGTACTACACATG
22854990 TGA
1 TGA
22854993 CCATAACTAT
Statistics
Matches: 89, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
50 2 0.02
51 85 0.96
52 2 0.02
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.26
Consensus pattern (50 bp):
TGATCAATGCTATCCAGTACACATAGTAGCTACACTTAGTACTACACATG
Found at i:22855015 original size:51 final size:49
Alignment explanation
Indices: 22854854--22855038 Score: 167
Period size: 51 Copynumber: 3.7 Consensus size: 49
22854844 TGCTATTCAG
* * * *
22854854 TACACATAGTAGCGTACACTTAGTACTACACATGTGATCAATACCATCCA
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAA-ACTATCCA
* * *
22854904 GTACACATAGTAG-CTAGCACATAGTACTACGCATGTGACCAAAGCTATCCGG
1 -TACACATAGTAGCCT-GCACTTAGTACTACACATGTGACCAAA-CTATCC-A
* *
22854956 TACACATAGTAGCCTGCACTTAGTACTACAAATGTGACCATAACTATCTTA
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCA-AACTATC-CA
* * * *
22855007 TACTCATAGT-GCCATACACATAGTAATACACA
1 TACACATAGTAGCC-TGCACTTAGTACTACACA
22855039 CGAGTTCTCA
Statistics
Matches: 110, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
50 5 0.05
51 101 0.92
52 4 0.04
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.25
Consensus pattern (49 bp):
TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAAACTATCCA
Found at i:22856217 original size:23 final size:23
Alignment explanation
Indices: 22856191--22856265 Score: 96
Period size: 23 Copynumber: 3.2 Consensus size: 23
22856181 AAATATTAAA
22856191 ACTTAATTACAATAAATTTTTCT
1 ACTTAATTACAATAAATTTTTCT
* ***
22856214 ACTTAATTACACAGTAAATATTAAA
1 ACTTAATTACA-A-TAAATTTTTCT
22856239 ACTTAATTACAATAAATTTTTCT
1 ACTTAATTACAATAAATTTTTCT
22856262 ACTT
1 ACTT
22856266 CAGATTTTGG
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
23 22 0.52
24 2 0.05
25 18 0.43
ACGTcount: A:0.43, C:0.13, G:0.01, T:0.43
Consensus pattern (23 bp):
ACTTAATTACAATAAATTTTTCT
Found at i:22856227 original size:48 final size:48
Alignment explanation
Indices: 22856170--22856265 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
22856160 ACAGTCATTC
22856170 AATTACACAGTAAATATTAAAACTTAATTACAATAAATTTTTCTACTT
1 AATTACACAGTAAATATTAAAACTTAATTACAATAAATTTTTCTACTT
22856218 AATTACACAGTAAATATTAAAACTTAATTACAATAAATTTTTCTACTT
1 AATTACACAGTAAATATTAAAACTTAATTACAATAAATTTTTCTACTT
22856266 CAGATTTTGG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.46, C:0.12, G:0.02, T:0.40
Consensus pattern (48 bp):
AATTACACAGTAAATATTAAAACTTAATTACAATAAATTTTTCTACTT
Found at i:22856242 original size:25 final size:25
Alignment explanation
Indices: 22856170--22856249 Score: 110
Period size: 25 Copynumber: 3.3 Consensus size: 25
22856160 ACAGTCATTC
22856170 AATTACACAGTAAATATTAAAACTT
1 AATTACACAGTAAATATTAAAACTT
* ***
22856195 AATTACA-A-TAAATTTTTCTACTT
1 AATTACACAGTAAATATTAAAACTT
22856218 AATTACACAGTAAATATTAAAACTT
1 AATTACACAGTAAATATTAAAACTT
22856243 AATTACA
1 AATTACA
22856250 ATAAATTTTT
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
23 18 0.40
24 2 0.04
25 25 0.56
ACGTcount: A:0.49, C:0.12, G:0.03, T:0.36
Consensus pattern (25 bp):
AATTACACAGTAAATATTAAAACTT
Found at i:22859995 original size:143 final size:144
Alignment explanation
Indices: 22859835--22860121 Score: 567
Period size: 143 Copynumber: 2.0 Consensus size: 144
22859825 TTTTTTTTCA
22859835 ATTTAGTGGGAAACATTTATTTTAATATTTTTAGTGTATTTGATATATTATATCTTTAATTTATT
1 ATTTAGTGGGAAACATTTATTTTAATATTTTTAGTGTATTTGATATATTATATCTTTAATTTATT
22859900 TTTTATATAAAAATAATAATATAAAAAATTCTAATATATGCGGGTTGGACCGAGCTTAGGCAAAA
66 TTTTATATAAAAATAATAATATAAAAAATTCTAATATATGCGGGTTGGACCGAGCTTAGGCAAAA
22859965 TTTTAGGCCCATTT
131 TTTTAGGCCCATTT
22859979 ATTTAGTGGG-AACATTTATTTTAATATTTTTAGTGTATTTGATATATTATATCTTTAATTTATT
1 ATTTAGTGGGAAACATTTATTTTAATATTTTTAGTGTATTTGATATATTATATCTTTAATTTATT
22860043 TTTTATATAAAAATAATAATATAAAAAATTCTAATATATGCGGGTTGGACCGAGCTTAGGCAAAA
66 TTTTATATAAAAATAATAATATAAAAAATTCTAATATATGCGGGTTGGACCGAGCTTAGGCAAAA
22860108 TTTTAGGCCCATTT
131 TTTTAGGCCCATTT
22860122 TTTGGGTTGA
Statistics
Matches: 143, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
143 133 0.93
144 10 0.07
ACGTcount: A:0.35, C:0.08, G:0.13, T:0.44
Consensus pattern (144 bp):
ATTTAGTGGGAAACATTTATTTTAATATTTTTAGTGTATTTGATATATTATATCTTTAATTTATT
TTTTATATAAAAATAATAATATAAAAAATTCTAATATATGCGGGTTGGACCGAGCTTAGGCAAAA
TTTTAGGCCCATTT
Found at i:22862886 original size:42 final size:42
Alignment explanation
Indices: 22862835--22862934 Score: 130
Period size: 42 Copynumber: 2.4 Consensus size: 42
22862825 GTTTAACTTA
* *
22862835 TATGAGTTTCTGTTTAAATCTTT-CGAGCTTTTGTTTAACCCT
1 TATGGGTTTCTGTTTAAAT-TTTACGAGCTTTTGTTCAACCCT
* * **
22862877 TATGGGTTTCCGTTCAGCTTTTACGAGCTTTTGTTCAACCCT
1 TATGGGTTTCTGTTTAAATTTTACGAGCTTTTGTTCAACCCT
22862919 TATGGGTTTCTGTTTA
1 TATGGGTTTCTGTTTA
22862935 GCTCCATGAG
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
41 3 0.06
42 46 0.94
ACGTcount: A:0.16, C:0.18, G:0.18, T:0.48
Consensus pattern (42 bp):
TATGGGTTTCTGTTTAAATTTTACGAGCTTTTGTTCAACCCT
Found at i:22862932 original size:21 final size:21
Alignment explanation
Indices: 22862866--22862932 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
22862856 TTCGAGCTTT
*
22862866 TGTTTAACCCTTATGGGTTTC
1 TGTTCAACCCTTATGGGTTTC
* * ** * *
22862887 CGTTCAGCTTTTACGAGCTTT-
1 TGTTCAACCCTTATG-GGTTTC
22862908 TGTTCAACCCTTATGGGTTTC
1 TGTTCAACCCTTATGGGTTTC
22862929 TGTT
1 TGTT
22862933 TAGCTCCATG
Statistics
Matches: 31, Mismatches: 13, Indels: 4
0.65 0.27 0.08
Matches are distributed among these distances:
20 4 0.13
21 23 0.74
22 4 0.13
ACGTcount: A:0.13, C:0.21, G:0.19, T:0.46
Consensus pattern (21 bp):
TGTTCAACCCTTATGGGTTTC
Found at i:22865940 original size:9 final size:9
Alignment explanation
Indices: 22865926--22865992 Score: 91
Period size: 9 Copynumber: 7.4 Consensus size: 9
22865916 TTTGGTTAAA
*
22865926 AATTAATCG
1 AATTAACCG
22865935 AATTAACCG
1 AATTAACCG
*
22865944 AATTACCCG
1 AATTAACCG
22865953 AATTAACCG
1 AATTAACCG
*
22865962 AATT-ACTCA
1 AATTAAC-CG
22865971 AATTAACCG
1 AATTAACCG
22865980 AATTAACCG
1 AATTAACCG
22865989 AATT
1 AATT
22865993 GAATCACTAC
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
8 2 0.04
9 47 0.92
10 2 0.04
ACGTcount: A:0.43, C:0.21, G:0.09, T:0.27
Consensus pattern (9 bp):
AATTAACCG
Found at i:22877563 original size:95 final size:95
Alignment explanation
Indices: 22877400--22877584 Score: 298
Period size: 95 Copynumber: 1.9 Consensus size: 95
22877390 TTATATGTTA
* * * * * *
22877400 TTATACCATGGCAGTATCAACCAATTCAAGTATATAGCCATTTAAACCAATCATTCAATATCATA
1 TTATACCATGCCAATATCAACCAATTCAAGCATATAACCATCTAAACCAACCATTCAATATCATA
*
22877465 CAATTCTGTCATTCATCATTCAAGCATGCT
66 CAATTCAGTCATTCATCATTCAAGCATGCT
*
22877495 TTATACCATGCCAATATCAACCTATTCAAGCATATAACCATCTAAACCAACCATTCAATATCATA
1 TTATACCATGCCAATATCAACCAATTCAAGCATATAACCATCTAAACCAACCATTCAATATCATA
22877560 CAATTCAGTCATTCATCATTCAAGC
66 CAATTCAGTCATTCATCATTCAAGC
22877585 TTGTTCAATT
Statistics
Matches: 82, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
95 82 1.00
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.31
Consensus pattern (95 bp):
TTATACCATGCCAATATCAACCAATTCAAGCATATAACCATCTAAACCAACCATTCAATATCATA
CAATTCAGTCATTCATCATTCAAGCATGCT
Found at i:22878457 original size:30 final size:30
Alignment explanation
Indices: 22878423--22878506 Score: 141
Period size: 30 Copynumber: 2.8 Consensus size: 30
22878413 GACTCAGATA
*
22878423 CACACAAGCTAAAATTATATCAAGGTTGCT
1 CACACAAGCTAAAATTATACCAAGGTTGCT
*
22878453 CACACAAGCTAAAATTATACCAGGGTTGCT
1 CACACAAGCTAAAATTATACCAAGGTTGCT
*
22878483 CACACAAGCTAAAATTACACCAAG
1 CACACAAGCTAAAATTATACCAAG
22878507 TTACTCATCT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.42, C:0.24, G:0.13, T:0.21
Consensus pattern (30 bp):
CACACAAGCTAAAATTATACCAAGGTTGCT
Found at i:22879147 original size:10 final size:10
Alignment explanation
Indices: 22879134--22879167 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
22879124 ATTAAACTAA
22879134 TTTAATTAAC
1 TTTAATTAAC
*
22879144 TTTATTTAAC
1 TTTAATTAAC
*
22879154 TTTAATTAGC
1 TTTAATTAAC
22879164 TTTA
1 TTTA
22879168 GTAGATTTGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.32, C:0.09, G:0.03, T:0.56
Consensus pattern (10 bp):
TTTAATTAAC
Found at i:22880070 original size:41 final size:41
Alignment explanation
Indices: 22880013--22880369 Score: 420
Period size: 41 Copynumber: 8.8 Consensus size: 41
22880003 TTTTGAGGCA
* *
22880013 TTTAGAGGCGTTTTTGAGAAAGCGCCGCTAATGCTTGGGGC
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCGGGGC
22880054 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCGGGGC
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCGGGGC
** **** * * * *
22880095 TTTAGCGGCGTTTTTCCGTTTTCAG-AG-T--T-TTTGAGGC
1 TTTAGCGGCGTTTTTGAGAAAGC-GCCGCTAATGCTCGGGGC
* *
22880132 ATTTAGAGGCGTTTTTGAGAAAGCGGCGCTAATGCT-GGGGCC
1 -TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCGGGG-C
22880174 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCGGGGC
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCGGGGC
** *
22880215 TTTAGCGTAGTTTTTGAGAAAGCGTCGCTAATGCTCGGGGC
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCGGGGC
* *
22880256 TTTAGCGGCGTTTTTGAGAAGGCGCTGCTAATGCTCGGGGC
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCGGGGC
* * * *
22880297 TTTAGCGGCATTTTTGAGAAAGCGCGGCTAATGCTCGTGTC
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCGGGGC
* *
22880338 TTTAGCGGCGTTTTTGAAAAAGTGCCGCTAAT
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAAT
22880370 AATAAAATCT
Statistics
Matches: 266, Mismatches: 41, Indels: 18
0.82 0.13 0.06
Matches are distributed among these distances:
37 6 0.02
38 18 0.07
39 1 0.00
40 1 0.00
41 233 0.88
42 7 0.03
ACGTcount: A:0.18, C:0.18, G:0.32, T:0.31
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCGGGGC
Found at i:22880148 original size:120 final size:120
Alignment explanation
Indices: 22879990--22880352 Score: 462
Period size: 120 Copynumber: 3.0 Consensus size: 120
22879980 CCGAACGACG
22879990 CCGTTTTCAGAGTTTTTGAGGCATTTAGAGGCGTTTTTGAGAAAGCGCCGCTAATGCTTGGGGCT
1 CCGTTTTCAGAGTTTTTGAGGCATTTAGAGGCGTTTTTGAGAAAGCGCCGCTAATGCTTGGGGCT
22880055 TTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTT
66 TTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTT
*
22880110 CCGTTTTCAGAGTTTTTGAGGCATTTAGAGGCGTTTTTGAGAAAGCGGCGCTAATGC-TGGGGCC
1 CCGTTTTCAGAGTTTTTGAGGCATTTAGAGGCGTTTTTGAGAAAGCGCCGCTAATGCTTGGGG-C
**
22880174 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCGGGGCTTTAGCGTAGTTTTT
65 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTT
** *** * ** * * * * * *
22880230 GAGAAAGCGTC-GCTAATGCTCGGGGC-TTTAGCGGCGTTTTTGAGAAGGCGCTGCTAATGCTCG
1 CCG---TTTTCAG--AGTTTTTGAGGCATTTAGAGGCGTTTTTGAGAAAGCGCCGCTAATGCTTG
* * * *
22880293 GGGCTTTAGCGGCATTTTTGAGAAAGCGCGGCTAATGCTCGTGTCTTTAGCGGCGTTTTT
61 GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTT
22880353 GAAAAAGTGC
Statistics
Matches: 212, Mismatches: 24, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
119 5 0.02
120 112 0.53
122 1 0.00
123 83 0.39
124 11 0.05
ACGTcount: A:0.17, C:0.18, G:0.32, T:0.32
Consensus pattern (120 bp):
CCGTTTTCAGAGTTTTTGAGGCATTTAGAGGCGTTTTTGAGAAAGCGCCGCTAATGCTTGGGGCT
TTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTT
Found at i:22881010 original size:29 final size:28
Alignment explanation
Indices: 22880954--22881011 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 28
22880944 GGGTTATAGG
*
22880954 AAAATATTATAAATATTGAAATTCGAAT
1 AAAATATTATAAATATTGAAATTAGAAT
*
22880982 AAAA-ATTATTAAATATTGAATTTTAGAAT
1 AAAATATTA-TAAATATTGAA-ATTAGAAT
22881011 A
1 A
22881012 TAATTAAGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
27 4 0.15
28 15 0.58
29 7 0.27
ACGTcount: A:0.53, C:0.02, G:0.07, T:0.38
Consensus pattern (28 bp):
AAAATATTATAAATATTGAAATTAGAAT
Found at i:22881461 original size:6 final size:7
Alignment explanation
Indices: 22881434--22881496 Score: 65
Period size: 7 Copynumber: 9.1 Consensus size: 7
22881424 TTTTGAGTTC
22881434 AGGGTTT
1 AGGGTTT
22881441 AGGGTTT
1 AGGGTTT
22881448 AGGGTTT
1 AGGGTTT
22881455 A-GGTTT
1 AGGGTTT
*
22881461 AGGGCTT
1 AGGGTTT
* *
22881468 GGGGATT
1 AGGGTTT
*
22881475 GGGGTTT
1 AGGGTTT
*
22881482 AAGGTTT
1 AGGGTTT
*
22881489 AGAGTTT
1 AGGGTTT
22881496 A
1 A
22881497 CATTTTAGTG
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
6 6 0.13
7 41 0.87
ACGTcount: A:0.17, C:0.02, G:0.41, T:0.40
Consensus pattern (7 bp):
AGGGTTT
Found at i:22881920 original size:10 final size:10
Alignment explanation
Indices: 22881893--22881953 Score: 59
Period size: 10 Copynumber: 5.8 Consensus size: 10
22881883 GTGATTTAAA
22881893 ATTTTAAAATG
1 ATTTTAAAA-G
22881904 AATTTTAAAAG
1 -ATTTTAAAAG
**
22881915 ATTTTAAATT
1 ATTTTAAAAG
* *
22881925 TTTTTAAAAA
1 ATTTTAAAAG
22881935 ATTTTAAAAAG
1 ATTTT-AAAAG
22881946 ATTTTAAA
1 ATTTTAAA
22881954 CTTTTATTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
10 22 0.54
11 10 0.24
12 9 0.22
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (10 bp):
ATTTTAAAAG
Found at i:22881948 original size:31 final size:31
Alignment explanation
Indices: 22881894--22881958 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
22881884 TGATTTAAAA
*
22881894 TTTTAAAATGAATTTTAAAAGATTTTAAATTT
1 TTTTAAAA-GAATTTTAAAAGATTTTAAACTT
22881926 TTTTAAAA-AATTTTAAAAAGATTTTAAACTT
1 TTTTAAAAGAATTTT-AAAAGATTTTAAACTT
22881957 TT
1 TT
22881959 ATTTTTATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
30 6 0.19
31 17 0.55
32 8 0.26
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.49
Consensus pattern (31 bp):
TTTTAAAAGAATTTTAAAAGATTTTAAACTT
Found at i:22882789 original size:13 final size:13
Alignment explanation
Indices: 22882773--22882797 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22882763 GTTTTGATTG
22882773 TTTATTTTCCTTC
1 TTTATTTTCCTTC
22882786 TTTATTTTCCTT
1 TTTATTTTCCTT
22882798 TCTGTAAGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.20, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTATTTTCCTTC
Found at i:22886087 original size:42 final size:42
Alignment explanation
Indices: 22886008--22886096 Score: 108
Period size: 42 Copynumber: 2.1 Consensus size: 42
22885998 TAAATTTTTT
* * * * *
22886008 TAAAGGTTATGTTTTTAGTGACGTTTTTGCGAGAAGCGCTGC
1 TAAAGGTTATGTTTTTAGCGACGTTTGTACGAAAAGCGCCGC
*
22886050 TAAAGGTT-TGTTCTTTAGCGACGTTTGTATGAAAAGCGCCGC
1 TAAAGGTTATGTT-TTTAGCGACGTTTGTACGAAAAGCGCCGC
22886092 TAAAG
1 TAAAG
22886097 ATATTATTTG
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
41 4 0.10
42 36 0.90
ACGTcount: A:0.25, C:0.13, G:0.27, T:0.35
Consensus pattern (42 bp):
TAAAGGTTATGTTTTTAGCGACGTTTGTACGAAAAGCGCCGC
Found at i:22886191 original size:116 final size:116
Alignment explanation
Indices: 22885985--22886211 Score: 339
Period size: 116 Copynumber: 2.0 Consensus size: 116
22885975 CATAATATAA
* * * *
22885985 TATTTGATTAAAATAAATTTTTTTAAAGGTTATGTTTTTAGTGACGTTTTTGCGAGAAGCGCTGC
1 TATTTGATTAAAATAAATTATTTTAAAAGTTATGTTTTTAGCGACGTTTTTGCGAGAAGCGCCGC
*
22886050 TAAAGGTTTGTTCTTTAGCGACGTTTGTATGAAAAGCGCCGCTAAAGATAT
66 TAAAGGTTTGTTCTTTAGCGACGTTTGTAGGAAAAGCGCCGCTAAAGATAT
* * * *
22886101 TATTTGATTAAAAT-AATTATTTTAAAATTTATGTTTTTAGCGGCATTTTTTGCGAGAATCGCCG
1 TATTTGATTAAAATAAATTATTTTAAAAGTTATGTTTTTAGCGAC-GTTTTTGCGAGAAGCGCCG
* *
22886165 CTAAAGGTTTGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAA
65 CTAAAGGTTTGTTCTTTAGCGACGTTTGTAGGAAAAGCGCCGCTAAA
22886212 AGTTGTGATC
Statistics
Matches: 99, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
115 25 0.25
116 74 0.75
ACGTcount: A:0.28, C:0.11, G:0.22, T:0.39
Consensus pattern (116 bp):
TATTTGATTAAAATAAATTATTTTAAAAGTTATGTTTTTAGCGACGTTTTTGCGAGAAGCGCCGC
TAAAGGTTTGTTCTTTAGCGACGTTTGTAGGAAAAGCGCCGCTAAAGATAT
Found at i:22886301 original size:43 final size:43
Alignment explanation
Indices: 22886160--22886315 Score: 208
Period size: 43 Copynumber: 3.7 Consensus size: 43
22886150 TTGCGAGAAT
* *
22886160 CGCCGCTAAAGGT-TTGTTCTTTAGCGGCGTTTGTGGGAAAAG
1 CGCCGCTAAAGGTCGTGGTCTTTAGCGGCGTTTGTGGGAAAAG
* * * * * *
22886202 CGCCGCTAAAAGTTGTGATCTATAGCGGCATTTGTCGGAAAAG
1 CGCCGCTAAAGGTCGTGGTCTTTAGCGGCGTTTGTGGGAAAAG
*
22886245 CGCCGCTAAAGGTCGTGGTCTTTAGCAGCGTTTGTGGGAAAAG
1 CGCCGCTAAAGGTCGTGGTCTTTAGCGGCGTTTGTGGGAAAAG
*
22886288 CGCCGCTAAAGGTCGTAGT-TTTAGCGGC
1 CGCCGCTAAAGGTCGTGGTCTTTAGCGGC
22886316 TTTTTTTTCT
Statistics
Matches: 98, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
42 20 0.20
43 78 0.80
ACGTcount: A:0.22, C:0.19, G:0.32, T:0.27
Consensus pattern (43 bp):
CGCCGCTAAAGGTCGTGGTCTTTAGCGGCGTTTGTGGGAAAAG
Found at i:22890810 original size:171 final size:171
Alignment explanation
Indices: 22890525--22890866 Score: 639
Period size: 171 Copynumber: 2.0 Consensus size: 171
22890515 CCTAGAGCTA
22890525 GCCAAATAGTTGGATGAATGAATATATAGTATGCATGATGAGAGGCGTATAAGTATGAAAATATA
1 GCCAAATAGTTGGATGAATGAATATATAGTATGCATGATGAGAGGCGTATAAGTATGAAAATATA
* * *
22890590 AAACTGAAAATGGAAAGGTATTCGCCAAAGAGAGATACATGAAAGTCCAATTTTTCAAGATGAAG
66 AAACTAAAAATGAAAAGGTATTCGCCAAAGAGAGATACATGAAAGTCCAATTTTCCAAGATGAAG
22890655 AATTTCATGAAAGTTAAAAAGGCAAGTTGTGTTCATAACTC
131 AATTTCATGAAAGTTAAAAAGGCAAGTTGTGTTCATAACTC
*
22890696 GCCAAATAGTTGGATGAATGAATATATAGTATGCATGATGAGAGGCGTATAAGTATGAAAGTATA
1 GCCAAATAGTTGGATGAATGAATATATAGTATGCATGATGAGAGGCGTATAAGTATGAAAATATA
*
22890761 CAACTAAAAATGAAAAGGTATTCGCCAAAGAGAGATACATGAAAGTCCAATTTTCCAAGATGAAG
66 AAACTAAAAATGAAAAGGTATTCGCCAAAGAGAGATACATGAAAGTCCAATTTTCCAAGATGAAG
22890826 AATTTCATGAAAGTTAAAAAGGCAAGTTGTGTTCATAACTC
131 AATTTCATGAAAGTTAAAAAGGCAAGTTGTGTTCATAACTC
22890867 ACTACGTTCC
Statistics
Matches: 166, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
171 166 1.00
ACGTcount: A:0.42, C:0.11, G:0.21, T:0.26
Consensus pattern (171 bp):
GCCAAATAGTTGGATGAATGAATATATAGTATGCATGATGAGAGGCGTATAAGTATGAAAATATA
AAACTAAAAATGAAAAGGTATTCGCCAAAGAGAGATACATGAAAGTCCAATTTTCCAAGATGAAG
AATTTCATGAAAGTTAAAAAGGCAAGTTGTGTTCATAACTC
Found at i:22897052 original size:38 final size:38
Alignment explanation
Indices: 22896946--22897062 Score: 198
Period size: 39 Copynumber: 3.0 Consensus size: 38
22896936 ATCCAACTCA
22896946 ACCCAATTACACAACCCAATAAAACTAAAACTAAAGTCT
1 ACCCAATTAC-CAACCCAATAAAACTAAAACTAAAGTCT
22896985 ACCCAATTACCCAACCCAATAAAACTAAAACTAAAGTCT
1 ACCCAATTA-CCAACCCAATAAAACTAAAACTAAAGTCT
* *
22897024 ACCCAATTACCAGCCCAATAAAAATAAAACTAAAGTCT
1 ACCCAATTACCAACCCAATAAAACTAAAACTAAAGTCT
22897062 A
1 A
22897063 ACTCTAAGCC
Statistics
Matches: 75, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
38 28 0.37
39 46 0.61
40 1 0.01
ACGTcount: A:0.50, C:0.28, G:0.03, T:0.18
Consensus pattern (38 bp):
ACCCAATTACCAACCCAATAAAACTAAAACTAAAGTCT
Found at i:22900544 original size:163 final size:161
Alignment explanation
Indices: 22900253--22900579 Score: 503
Period size: 163 Copynumber: 2.0 Consensus size: 161
22900243 TCAAAACCCA
* *
22900253 AATTGGATGGAAATGCTAATGTCAGCAATAGCATTGTTAACTCCCATATGGCATTCAGTTAATGG
1 AATTGGATGGAAATGCTAATGTCAGCAATAGCATTCTTAACTCCCATATGGCATTCAGTTAATAG
* * *
22900318 TGTGGCAAATGCATACAAATATGATTTCCTAACATGTCACCTACAGTCACAAAAT-ATTTTTTTT
66 TGTGGCAAACGCATACAAAGATAATTTCCTAACATGTCACCTACAGTCACAAAATAATTTTTTTT
22900382 AAAATAATCATTTAACTTATTCAAGTTTTAATT
131 AAAATAATCATTTAACTT-TTCAAG-TTTAATT
* * *
22900415 AATTGGATGGAAAATGCTAATGTTAGCAATAGCATTCTTAACTCCTATATGGCATTCGGTTAATA
1 AATTGGATGG-AAATGCTAATGTCAGCAATAGCATTCTTAACTCCCATATGGCATTCAGTTAATA
** * *
22900480 GTGTGGCAAACGCATACAAAGATAATTTGTTAATATGTCACCTACAGTCAGAAAATAATTTTTTT
65 GTGTGGCAAACGCATACAAAGATAATTTCCTAACATGTCACCTACAGTCACAAAATAATTTTTTT
*
22900545 TTAAATAATCATTTAACTTTTCAAGTTTAATT
130 TAAAATAATCATTTAACTTTTCAAGTTTAATT
22900577 AAT
1 AAT
22900580 CAAACTTAGT
Statistics
Matches: 150, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
162 20 0.13
163 104 0.69
164 26 0.17
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (161 bp):
AATTGGATGGAAATGCTAATGTCAGCAATAGCATTCTTAACTCCCATATGGCATTCAGTTAATAG
TGTGGCAAACGCATACAAAGATAATTTCCTAACATGTCACCTACAGTCACAAAATAATTTTTTTT
AAAATAATCATTTAACTTTTCAAGTTTAATT
Found at i:22913133 original size:105 final size:105
Alignment explanation
Indices: 22912951--22913161 Score: 395
Period size: 105 Copynumber: 2.0 Consensus size: 105
22912941 NNNNNNNNNN
*
22912951 AAAAAGAGAGTATTTGTTTTCTTCCAAATTTGTGTGAGGCAAATTTTTGAGAGTAGAGTGATTCT
1 AAAAAGAGAGTATTTGTTTTATTCCAAATTTGTGTGAGGCAAATTTTTGAGAGTAGAGTGATTCT
*
22913016 TCTCTTGCTATTTAGTTTGGAGTTTGTTACTTTTGAGGGT
66 TCTCTTACTATTTAGTTTGGAGTTTGTTACTTTTGAGGGT
*
22913056 AAAAATAGAGTATTTGTTTTATTCCAAATTTGTGTGAGGCAAATTTTTGAGAGTAGAGTGATTCT
1 AAAAAGAGAGTATTTGTTTTATTCCAAATTTGTGTGAGGCAAATTTTTGAGAGTAGAGTGATTCT
22913121 TCTCTTACTATTTAGTTTGGAGTTTGTTACTTTTGAGGGT
66 TCTCTTACTATTTAGTTTGGAGTTTGTTACTTTTGAGGGT
22913161 A
1 A
22913162 TTTCGGAGTT
Statistics
Matches: 103, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
105 103 1.00
ACGTcount: A:0.25, C:0.08, G:0.23, T:0.44
Consensus pattern (105 bp):
AAAAAGAGAGTATTTGTTTTATTCCAAATTTGTGTGAGGCAAATTTTTGAGAGTAGAGTGATTCT
TCTCTTACTATTTAGTTTGGAGTTTGTTACTTTTGAGGGT
Found at i:22914043 original size:44 final size:45
Alignment explanation
Indices: 22913995--22914082 Score: 133
Period size: 45 Copynumber: 2.0 Consensus size: 45
22913985 CGACTTTAAC
* **
22913995 GTGGGTTCTTTAACATC-TTCATTAAAACTTCCAACTTTGCCATT
1 GTGGGTTCTTTAAAATCTTTCACGAAAACTTCCAACTTTGCCATT
*
22914039 GTGGGTTCTTTAAAATCTTTTACGAAAACTTCCAACTTTGCCAT
1 GTGGGTTCTTTAAAATCTTTCACGAAAACTTCCAACTTTGCCAT
22914083 GGGTTTCCCT
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
44 16 0.41
45 23 0.59
ACGTcount: A:0.26, C:0.22, G:0.12, T:0.40
Consensus pattern (45 bp):
GTGGGTTCTTTAAAATCTTTCACGAAAACTTCCAACTTTGCCATT
Found at i:22925436 original size:59 final size:59
Alignment explanation
Indices: 22925373--22925543 Score: 166
Period size: 59 Copynumber: 2.9 Consensus size: 59
22925363 CAACTTGTAT
* * *
22925373 TCAAACCCTATGCATTCATTCTATTCTAACACTTGTTCCCTAGTCCAAGCAACACAGGC
1 TCAAACTCTTTGCATTCATTCTATTCTAACACTTGTTCCCTAGTCCAAGCAACACAGAC
** * * * * * * *
22925432 TCAAACTCTTTGCCCTCATTTTTTTCTAGCACTTGTTCACAAGTCCTAGCAACACATAC
1 TCAAACTCTTTGCATTCATTCTATTCTAACACTTGTTCCCTAGTCCAAGCAACACAGAC
* * * *
22925491 TCAAACTCTTTGCATTTGA-TCTATTCCAAGACTTGTT-CCTAAGGCCAAGCAAC
1 TCAAACTCTTTGCA-TTCATTCTATTCTAACACTTGTTCCCT-AGTCCAAGCAAC
22925544 TAGAATGTCT
Statistics
Matches: 86, Mismatches: 24, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
58 1 0.01
59 83 0.97
60 2 0.02
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (59 bp):
TCAAACTCTTTGCATTCATTCTATTCTAACACTTGTTCCCTAGTCCAAGCAACACAGAC
Found at i:22931538 original size:45 final size:45
Alignment explanation
Indices: 22931488--22931582 Score: 131
Period size: 46 Copynumber: 2.1 Consensus size: 45
22931478 TTGTTGATCA
*
22931488 TACAAAATTCTTT-AAAAAA-TGTTAACTCTGTCACCTTGCTCATT
1 TACAAAATTCTTTCAAAAAACT-TTAACCCTGTCACCTTGCTCATT
* *
22931532 TCACAAAATTCTTTCAAAAAACTTTAACCCTTTGACCTTGCTCATT
1 T-ACAAAATTCTTTCAAAAAACTTTAACCCTGTCACCTTGCTCATT
22931578 TACAA
1 TACAA
22931583 CAAATTAGGT
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
44 1 0.02
45 16 0.36
46 27 0.60
47 1 0.02
ACGTcount: A:0.35, C:0.23, G:0.05, T:0.37
Consensus pattern (45 bp):
TACAAAATTCTTTCAAAAAACTTTAACCCTGTCACCTTGCTCATT
Found at i:22939973 original size:13 final size:13
Alignment explanation
Indices: 22939955--22939979 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22939945 TTTACTTGTG
22939955 TGAAAATTTTATA
1 TGAAAATTTTATA
22939968 TGAAAATTTTAT
1 TGAAAATTTTAT
22939980 CGTTTGTGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGAAAATTTTATA
Found at i:22941159 original size:41 final size:41
Alignment explanation
Indices: 22941039--22941175 Score: 157
Period size: 41 Copynumber: 3.3 Consensus size: 41
22941029 ATAAGTTCAA
* * *
22941039 GCTTTATGCTGGTGAATTATATCAGGCTTTAAGCCTAGCAG
1 GCTTTATGCCGGTGAATTATATCAGGCTTTATGCCTAGTAG
* * * *
22941080 GCTCTGTGCCGGTGAATTATATCAGACTTTATGTCTAGTAG
1 GCTTTATGCCGGTGAATTATATCAGGCTTTATGCCTAGTAG
* * * * * *
22941121 GCTTTGTGCCGGTGAAATGTATCGGGCTTTGTGCCTAGTAA
1 GCTTTATGCCGGTGAATTATATCAGGCTTTATGCCTAGTAG
22941162 GCTTTATGCCGGTG
1 GCTTTATGCCGGTG
22941176 TTTTATACAA
Statistics
Matches: 80, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 80 1.00
ACGTcount: A:0.20, C:0.18, G:0.28, T:0.35
Consensus pattern (41 bp):
GCTTTATGCCGGTGAATTATATCAGGCTTTATGCCTAGTAG
Found at i:22941973 original size:24 final size:23
Alignment explanation
Indices: 22941946--22942143 Score: 99
Period size: 24 Copynumber: 8.6 Consensus size: 23
22941936 GCCTATTTAC
22941946 TGTATATATGCTGTTAAATTTTAG
1 TGTATATATGCTGTTAAATTTT-G
*
22941970 TGTA-AAAGTGCTGTTAAA-TTTG
1 TGTATATA-TGCTGTTAAATTTTG
* * * **
22941992 -GTATGTAT-ATGCTACCTATTTG
1 TGTATATATGCTGTTAAAT-TTTG
*
22942014 TTGTATATATACTGTTAAATTTTGG
1 -TGTATATATGCTGTTAAATTTT-G
* *
22942039 TGTA-AAAGTGCTGTTAAATTTGG
1 TGTATATA-TGCTGTTAAATTTTG
* * *
22942062 TATGTATATGCTGCCT--A-TTTG
1 TGTATATATGCTG-TTAAATTTTG
22942083 TTGTATATATGCTGTTAAATTTTGG
1 -TGTATATATGCTGTTAAATTTT-G
* *
22942108 TGTA-AAAGTGCTGTTAAATTTGG
1 TGTATATA-TGCTGTTAAATTTTG
* *
22942131 TATGTATATGCTG
1 TGTATATATGCTG
22942144 CCCATTTGTT
Statistics
Matches: 128, Mismatches: 28, Indels: 37
0.66 0.15 0.19
Matches are distributed among these distances:
20 4 0.03
21 8 0.06
22 18 0.14
23 26 0.20
24 65 0.51
25 7 0.05
ACGTcount: A:0.27, C:0.07, G:0.21, T:0.46
Consensus pattern (23 bp):
TGTATATATGCTGTTAAATTTTG
Found at i:22942019 original size:69 final size:69
Alignment explanation
Indices: 22941936--22942160 Score: 396
Period size: 69 Copynumber: 3.3 Consensus size: 69
22941926 TTATATTTAA
** *
22941936 GCCTATTTACTGTATATATGCTGTTAAATTTTAGTGTAAAAGTGCTGTTAAATTTGGTATGTATA
1 GCCTATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATA
22942001 TGCT
66 TGCT
* *
22942005 ACCTATTTGTTGTATATATACTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATA
1 GCCTATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATA
22942070 TGCT
66 TGCT
22942074 GCCTATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATA
1 GCCTATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATA
22942139 TGCT
66 TGCT
*
22942143 GCCCATTTGTTGTATATA
1 GCCTATTTGTTGTATATA
22942161 AGAGTTGTCC
Statistics
Matches: 148, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
69 148 1.00
ACGTcount: A:0.26, C:0.08, G:0.20, T:0.46
Consensus pattern (69 bp):
GCCTATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATA
TGCT
Found at i:22945203 original size:37 final size:37
Alignment explanation
Indices: 22945153--22945227 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
22945143 TTACACGAAG
22945153 TCAGTTTCTTGGGCCATGTTATATAAGCATAACGTAT
1 TCAGTTTCTTGGGCCATGTTATATAAGCATAACGTAT
22945190 TCAGTTTCTTGGGCCATGTTATATAAGCATAACGTAT
1 TCAGTTTCTTGGGCCATGTTATATAAGCATAACGTAT
22945227 T
1 T
22945228 TGGGTTGATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.39
Consensus pattern (37 bp):
TCAGTTTCTTGGGCCATGTTATATAAGCATAACGTAT
Found at i:22948455 original size:28 final size:27
Alignment explanation
Indices: 22948422--22948520 Score: 119
Period size: 28 Copynumber: 3.6 Consensus size: 27
22948412 TAATGAGATT
22948422 AGCACTAAGTGTGCGAGTTTAATTGAA
1 AGCACTAAGTGTGCGAGTTTAATTGAA
* **
22948449 ATGCACTAAGTGTGCGAGTATAAGGGTAA
1 A-GCACTAAGTGTGCGAGTTTAATTG-AA
*
22948478 AGCACTAAGTGTGCGAGTTTGATT-ATTA
1 AGCACTAAGTGTGCGAGTTTAATTGA--A
22948506 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
22948521 TACTTATTAA
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
26 1 0.02
27 1 0.02
28 56 0.92
29 3 0.05
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.28
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTTAATTGAA
Found at i:22949367 original size:25 final size:25
Alignment explanation
Indices: 22949336--22949516 Score: 143
Period size: 24 Copynumber: 7.6 Consensus size: 25
22949326 ATTTAATGTA
*
22949336 TAATGCTGTCCAATTTTAAGTTTAT
1 TAATGCTGTCCAATTTTAAGTATAT
* *
22949361 TGATGCTGTCC-ATTTTAA-TTTA-
1 TAATGCTGTCCAATTTTAAGTATAT
* *
22949383 TAGTGCTGTCCAATTTTGAGTATAT
1 TAATGCTGTCCAATTTTAAGTATAT
*
22949408 TAATGCTGTCC-ATTTTAA-TGTA-
1 TAATGCTGTCCAATTTTAAGTATAT
*
22949430 TAATGCTGTCCAATTTTGAGTATATT
1 TAATGCTGTCCAATTTTAAGTATA-T
* ** *
22949456 TAA-GCTGTCTAA-TTCGA-TGTA-
1 TAATGCTGTCCAATTTTAAGTATAT
*
22949477 TAATGCTGTCC-A-TTTAGAGCATAT
1 TAATGCTGTCCAATTTTA-AGTATAT
*
22949501 TATTGCTGTCCAATTT
1 TAATGCTGTCCAATTT
22949517 GATGAATAAT
Statistics
Matches: 124, Mismatches: 19, Indels: 25
0.74 0.11 0.15
Matches are distributed among these distances:
21 6 0.05
22 27 0.22
23 24 0.19
24 33 0.27
25 29 0.23
26 5 0.04
ACGTcount: A:0.26, C:0.14, G:0.15, T:0.45
Consensus pattern (25 bp):
TAATGCTGTCCAATTTTAAGTATAT
Found at i:22949392 original size:22 final size:23
Alignment explanation
Indices: 22949327--22949446 Score: 136
Period size: 23 Copynumber: 5.1 Consensus size: 23
22949317 GTGTTATAAA
22949327 TTTAATGTATAATGCTGTCCAAT
1 TTTAATGTATAATGCTGTCCAAT
* *
22949350 TTTAAGTTTATTGATGCTGTCC-AT
1 TTTAA-TGTA-TAATGCTGTCCAAT
* *
22949374 TTTAATTTATAGTGCTGTCCAAT
1 TTTAATGTATAATGCTGTCCAAT
* *
22949397 TTTGAGTATATTAATGCTGTCC-AT
1 TTT-AATGTA-TAATGCTGTCCAAT
22949421 TTTAATGTATAATGCTGTCCAAT
1 TTTAATGTATAATGCTGTCCAAT
22949444 TTT
1 TTT
22949447 GAGTATATTT
Statistics
Matches: 82, Mismatches: 9, Indels: 12
0.80 0.09 0.12
Matches are distributed among these distances:
22 20 0.24
23 23 0.28
24 19 0.23
25 20 0.24
ACGTcount: A:0.26, C:0.12, G:0.14, T:0.47
Consensus pattern (23 bp):
TTTAATGTATAATGCTGTCCAAT
Found at i:22949396 original size:47 final size:47
Alignment explanation
Indices: 22949327--22949536 Score: 244
Period size: 47 Copynumber: 4.5 Consensus size: 47
22949317 GTGTTATAAA
* * *
22949327 TTTAATGTATAATGCTGTCCAATTTTAAGTTTATTGATGCTGTCCAT
1 TTTAATGTATAATGCTGTCCAATTTTGAGTATATTAATGCTGTCCAT
* *
22949374 TTTAATTTATAGTGCTGTCCAATTTTGAGTATATTAATGCTGTCCAT
1 TTTAATGTATAATGCTGTCCAATTTTGAGTATATTAATGCTGTCCAT
* *
22949421 TTTAATGTATAATGCTGTCCAATTTTGAGTATATTTAA-GCTGTCTAA
1 TTTAATGTATAATGCTGTCCAATTTTGAGTATA-TTAATGCTGTCCAT
** * * * *
22949468 TTCGATGTATAATGCTGTCC-ATTTAGAGCATATTATTGCTGTCCAA
1 TTTAATGTATAATGCTGTCCAATTTTGAGTATATTAATGCTGTCCAT
* * *
22949514 TTTGATGAATAATTGTTGTCCAA
1 TTTAATGTATAA-TGCTGTCCAA
22949537 AACAGGCTTG
Statistics
Matches: 141, Mismatches: 18, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
45 3 0.02
46 28 0.20
47 105 0.74
48 5 0.04
ACGTcount: A:0.27, C:0.13, G:0.16, T:0.44
Consensus pattern (47 bp):
TTTAATGTATAATGCTGTCCAATTTTGAGTATATTAATGCTGTCCAT
Found at i:22958218 original size:23 final size:23
Alignment explanation
Indices: 22958192--22958237 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
22958182 TGTTCAATAA
22958192 ATATACATGAAAGGGTATAATGT
1 ATATACATGAAAGGGTATAATGT
22958215 ATATACATGAAAGGGTATAATGT
1 ATATACATGAAAGGGTATAATGT
22958238 CTTTTGGTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.04, G:0.22, T:0.30
Consensus pattern (23 bp):
ATATACATGAAAGGGTATAATGT
Found at i:22958904 original size:12 final size:12
Alignment explanation
Indices: 22958887--22958925 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
22958877 CGACTCGCCC
22958887 ATATTAATTTTT
1 ATATTAATTTTT
*
22958899 ATATTATTTTTT
1 ATATTAATTTTT
*
22958911 ATA-TAATTTTA
1 ATATTAATTTTT
22958922 ATAT
1 ATAT
22958926 ATATATATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
11 9 0.39
12 14 0.61
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:22959092 original size:30 final size:30
Alignment explanation
Indices: 22959048--22959108 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
22959038 ACTTAACAAG
22959048 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
* *
22959078 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
22959108 C
1 C
22959109 TATAAAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.56, C:0.15, G:0.03, T:0.26
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:22964725 original size:17 final size:17
Alignment explanation
Indices: 22964700--22964733 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
22964690 AAGAAAACTA
*
22964700 TTTAATTAATTTTTATT
1 TTTAATTAATTATTATT
*
22964717 TTTATTTAATTATTATT
1 TTTAATTAATTATTATT
22964734 GAATAAGAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTAATTAATTATTATT
Found at i:22969877 original size:21 final size:21
Alignment explanation
Indices: 22969851--22969900 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
22969841 TACACGTTTG
* *
22969851 GCCACATGGCCACGTTCTTGA
1 GCCACACGACCACGTTCTTGA
*
22969872 GCCACACGACCATGTTCTTGA
1 GCCACACGACCACGTTCTTGA
22969893 GCCACACG
1 GCCACACG
22969901 GGCTAAGCCC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.22, C:0.36, G:0.22, T:0.20
Consensus pattern (21 bp):
GCCACACGACCACGTTCTTGA
Found at i:22984620 original size:12 final size:10
Alignment explanation
Indices: 22984594--22984618 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
22984584 TAAAGGAAAC
22984594 TATATTTCAA
1 TATATTTCAA
22984604 TATATTTCAA
1 TATATTTCAA
22984614 TATAT
1 TATAT
22984619 ATATATGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (10 bp):
TATATTTCAA
Found at i:22985532 original size:5 final size:5
Alignment explanation
Indices: 22985516--22985563 Score: 69
Period size: 5 Copynumber: 9.2 Consensus size: 5
22985506 TAAAGAAAGA
*
22985516 AAAAT GAAAAT AAAAT AAAAT AAAAT AAAAT AAAAAC AAAAT AAAAT A
1 AAAAT -AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT AAAAT AAAAT A
22985564 TAAAAACTCA
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
5 30 0.77
6 9 0.23
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:22985551 original size:16 final size:16
Alignment explanation
Indices: 22985515--22985568 Score: 74
Period size: 16 Copynumber: 3.3 Consensus size: 16
22985505 CTAAAGAAAG
22985515 AAAAATGAAAATAAAAT
1 AAAAAT-AAAATAAAAT
22985532 -AAAATAAAATAAAAT
1 AAAAATAAAATAAAAT
*
22985547 AAAAACAAAATAAAAT
1 AAAAATAAAATAAAAT
22985563 ATAAAA
1 A-AAAA
22985569 ACTCACAGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
15 10 0.29
16 20 0.59
17 4 0.12
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.17
Consensus pattern (16 bp):
AAAAATAAAATAAAAT
Found at i:22989904 original size:43 final size:43
Alignment explanation
Indices: 22989737--22989930 Score: 169
Period size: 43 Copynumber: 4.5 Consensus size: 43
22989727 AGATACTGGT
* * * * *
22989737 CTAAAGAACATGATCTTTAGTGGCGCTTCCCATAAAAATGTCG
1 CTAAAGAACATGATCTTTAGCGACGCTTCACACAAAAATGCCG
* * * * * *
22989780 TTAAAGAACATGATCTTTAGCGGTAC-TTTTAC-TAAAAACGCCA
1 CTAAAGAACATGATCTTTAGC-G-ACGCTTCACACAAAAATGCCG
* * * * *
22989823 CTATAA-AAAATGATATTTCGCGGCGCTTCTCACAAAAATGCCG
1 CTA-AAGAACATGATCTTTAGCGACGCTTCACACAAAAATGCCG
*
22989866 CTATAGAACATGATCTTTAGCGACGCTTCACACAAAAATGCCG
1 CTAAAGAACATGATCTTTAGCGACGCTTCACACAAAAATGCCG
* *
22989909 CTAAAGATCATGTTCTTTAGCG
1 CTAAAGAACATGATCTTTAGCG
22989931 GCATTTGTAA
Statistics
Matches: 116, Mismatches: 29, Indels: 12
0.74 0.18 0.08
Matches are distributed among these distances:
41 1 0.01
42 5 0.04
43 103 0.89
44 6 0.05
45 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (43 bp):
CTAAAGAACATGATCTTTAGCGACGCTTCACACAAAAATGCCG
Found at i:22989932 original size:86 final size:86
Alignment explanation
Indices: 22989737--22989932 Score: 200
Period size: 86 Copynumber: 2.3 Consensus size: 86
22989727 AGATACTGGT
* * * *
22989737 CTAAAGAACATGATCTTTAGTGGCGCTTCCCATAAAAATGTCGTTAAAGAACATGATCTTTAGCG
1 CTAAAGAACATGATCTTTAGCGGCGCTTCCCACAAAAATGCCGCTAAAGAACATGATCTTTAGCG
* * *
22989802 GTACTTTTACTAAAAACGCCA
66 GTACCTTCACCAAAAACGCCA
* * * * *
22989823 CTATAA-AAAATGATATTTCGCGGCGCTTCTCACAAAAATGCCGCTATAGAACATGATCTTTAGC
1 CTA-AAGAACATGATCTTTAGCGGCGCTTCCCACAAAAATGCCGCTAAAGAACATGATCTTTAGC
* *
22989887 -G-ACGCTTCACACAAAAATGCCG
65 GGTAC-CTTCAC-CAAAAACGCCA
* *
22989909 CTAAAGATCATGTTCTTTAGCGGC
1 CTAAAGAACATGATCTTTAGCGGC
22989933 ATTTGTAAGA
Statistics
Matches: 87, Mismatches: 19, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
84 2 0.02
85 7 0.08
86 76 0.87
87 2 0.02
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.28
Consensus pattern (86 bp):
CTAAAGAACATGATCTTTAGCGGCGCTTCCCACAAAAATGCCGCTAAAGAACATGATCTTTAGCG
GTACCTTCACCAAAAACGCCA
Found at i:22996698 original size:23 final size:23
Alignment explanation
Indices: 22996672--22996715 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
22996662 AATCACTAAA
22996672 AAAACTAAAAGAAAT-ATATTAGT
1 AAAA-TAAAAGAAATCATATTAGT
* *
22996695 AAAATAATAGTAATCATATTA
1 AAAATAAAAGAAATCATATTA
22996716 TTTGTCAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.59, C:0.05, G:0.07, T:0.30
Consensus pattern (23 bp):
AAAATAAAAGAAATCATATTAGT
Found at i:23004261 original size:21 final size:22
Alignment explanation
Indices: 23004232--23004278 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
23004222 CAGAAGGAGT
*
23004232 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
23004254 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
23004275 GAGT
1 GAGT
23004279 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:23010963 original size:62 final size:60
Alignment explanation
Indices: 23010855--23010973 Score: 168
Period size: 62 Copynumber: 1.9 Consensus size: 60
23010845 TTTTAATATA
*
23010855 TTTGTACAAACTATTTTTATATTATTTCATTTAATAAAATAGAAGTTGTTTTGAATATTT
1 TTTGTACAAACTATTTTTATATTATTTCATTTAATAAAATAGAAGTTCTTTTGAATATTT
* * *
23010915 TTTGTATAAATTATTTTTATATT-TTGTCCTATTTAATAAAATATAAGTTCTTTTGAATA
1 TTTGTACAAACTATTTTTATATTATT-T-C-ATTTAATAAAATAGAAGTTCTTTTGAATA
23010974 AGGCAATGGA
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
59 2 0.04
60 22 0.42
61 1 0.02
62 27 0.52
ACGTcount: A:0.34, C:0.05, G:0.08, T:0.53
Consensus pattern (60 bp):
TTTGTACAAACTATTTTTATATTATTTCATTTAATAAAATAGAAGTTCTTTTGAATATTT
Found at i:23012152 original size:43 final size:42
Alignment explanation
Indices: 23012103--23012183 Score: 126
Period size: 43 Copynumber: 1.9 Consensus size: 42
23012093 ATTTCATTTG
*
23012103 TCATCTCATAATCATTTTTCATATTTGCCATTTCAATATTTTC
1 TCATCTCATAATCATTTCTCATATTTGCCATTT-AATATTTTC
* *
23012146 TCATCTCATATTCATTTCTCATATTTTCCATTTAATAT
1 TCATCTCATAATCATTTCTCATATTTGCCATTTAATAT
23012184 CAATCACATA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
42 5 0.14
43 30 0.86
ACGTcount: A:0.26, C:0.21, G:0.01, T:0.52
Consensus pattern (42 bp):
TCATCTCATAATCATTTCTCATATTTGCCATTTAATATTTTC
Found at i:23019046 original size:126 final size:125
Alignment explanation
Indices: 23018815--23019298 Score: 528
Period size: 126 Copynumber: 3.9 Consensus size: 125
23018805 TAAGCAGGAG
* * * *
23018815 CATCTTCTCAAAATTA-TTTTGCAGAAACTATTGTAGAAAAAGAGCATCCAGCTGGGAGCTTTTT
1 CATCTTCTCAAAATTATTTTTTCAGAAACTATTATAGAAAAAGAGCGTCCAGCTGAGAGCTTTTT
* * * ** * ** *
23018879 TTAGTACTTTTGCTGACAATGTGTCCTGGTTGAAGTGTTTTTTACCTTATTTTTTCAGAA
66 TCAGTACTTTTACTGACAGTGCATCCTGCTTGAAGCATTTTTTACCTTATTTTTTTAGAA
* * * * *
23018939 TCATCTT-TCCAAAATTATATTTCCAGAAATTACTT-TAGAAAAAGAGCGTCTAG-TTAGGAGCT
1 -CATCTTCT-CAAAATTATTTTTTCAGAAACTA-TTATAGAAAAAGAGCGTCCAGCTGA-GAGCT
* * * *
23019001 GTTTTCAGTACTTTTACTGACAGTGCATCCTGTTTGAAGCGTTTTTTACCTAATTTTTTTAGAA
62 TTTTTCAGTACTTTTACTGACAGTGCATCCTGCTTGAAGCATTTTTTACCTTATTTTTTTAGAA
* * * * * * * *
23019065 CCATCTTTTTAAAATTATTTTTTAAGAAACTACTGTAGAAAAAGAACGTCTAGCTGAGAACTTTT
1 -CATCTTCTCAAAATTATTTTTTCAGAAACTATTATAGAAAAAGAGCGTCCAGCTGAGAGCTTTT
* *
23019130 TTCAGTACTTTTACTGATAGTGCATCCTGCTTGAAGCATTTTTTACCATATTTTTTTAGAA
65 TTCAGTACTTTTACTGACAGTGCATCCTGCTTGAAGCATTTTTTACCTTATTTTTTTAGAA
* * * *
23019191 CTATCTTCTTAAAATTATTTTTTC-GAAAACTATTATAGAAAAATAGCGTCCAACTGTGAGCTTT
1 C-ATCTTCTCAAAATTATTTTTTCAG-AAACTATTATAGAAAAAGAGCGTCCAGCTGAGAGCTTT
* *
23019255 TTTCAGTACTTTTGCTGACAGTGCATCCTACTTGAAGCATTTTT
64 TTTCAGTACTTTTACTGACAGTGCATCCTGCTTGAAGCATTTTT
23019299 GAACACAAGT
Statistics
Matches: 304, Mismatches: 46, Indels: 17
0.83 0.13 0.05
Matches are distributed among these distances:
124 1 0.00
125 18 0.06
126 280 0.92
127 5 0.02
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.41
Consensus pattern (125 bp):
CATCTTCTCAAAATTATTTTTTCAGAAACTATTATAGAAAAAGAGCGTCCAGCTGAGAGCTTTTT
TCAGTACTTTTACTGACAGTGCATCCTGCTTGAAGCATTTTTTACCTTATTTTTTTAGAA
Found at i:23025039 original size:18 final size:18
Alignment explanation
Indices: 23025016--23025056 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
23025006 AAAATATATC
23025016 AACTAAAAATCAAATTTA
1 AACTAAAAATCAAATTTA
*
23025034 AACTAAAAATTAAATTTA
1 AACTAAAAATCAAATTTA
23025052 AACTA
1 AACTA
23025057 TTTATAGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.61, C:0.10, G:0.00, T:0.29
Consensus pattern (18 bp):
AACTAAAAATCAAATTTA
Found at i:23026127 original size:17 final size:17
Alignment explanation
Indices: 23026105--23026148 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
23026095 TTAAATTATC
23026105 CATTAAATATTTAAATT
1 CATTAAATATTTAAATT
*
23026122 CATTAAATATTTATATT
1 CATTAAATATTTAAATT
* *
23026139 TAGTAAATAT
1 CATTAAATAT
23026149 AAAATATTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (17 bp):
CATTAAATATTTAAATT
Found at i:23037506 original size:3 final size:3
Alignment explanation
Indices: 23037486--23037580 Score: 91
Period size: 3 Copynumber: 31.7 Consensus size: 3
23037476 TTAATTTTAA
* * * * * * * * *
23037486 TAT TTT TAT TAT TGT TAT TAT TAT TAA TAC CAT CAT CAT CAT CAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
23037534 TAT TAT TAA TAT CAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
23037581 AATTGTTTTA
Statistics
Matches: 79, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 79 1.00
ACGTcount: A:0.34, C:0.07, G:0.01, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:23041185 original size:14 final size:14
Alignment explanation
Indices: 23041166--23041198 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
23041156 GCCATGTTTG
23041166 TTTGGGCCACTGAA
1 TTTGGGCCACTGAA
23041180 TTTGGGCCACTGAA
1 TTTGGGCCACTGAA
23041194 TTTGG
1 TTTGG
23041199 TTTTGGGCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.18, C:0.18, G:0.30, T:0.33
Consensus pattern (14 bp):
TTTGGGCCACTGAA
Found at i:23041629 original size:44 final size:44
Alignment explanation
Indices: 23041516--23041629 Score: 104
Period size: 44 Copynumber: 2.6 Consensus size: 44
23041506 TGTCGGCTTT
* * * * * *
23041516 AATCTGTTCCATTACAACTTCAGGGAGATAAGATTTGCCATCTTC
1 AATCTGCTCCACTACTAC-TCAGGGAGATAAGATCTACAATCTTC
* * *
23041561 GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTC
1 AATCTGCTCCACTACTACTCAGGGAGATAAGATCTACAATCTTC
* *
23041605 AA-CTTTCTCCACTGCTACTCAGGGA
1 AATC-TGCTCCACTACTACTCAGGGA
23041630 AACAAGGCTT
Statistics
Matches: 54, Mismatches: 14, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
43 1 0.02
44 40 0.74
45 13 0.24
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (44 bp):
AATCTGCTCCACTACTACTCAGGGAGATAAGATCTACAATCTTC
Found at i:23041677 original size:132 final size:132
Alignment explanation
Indices: 23041541--23041778 Score: 379
Period size: 132 Copynumber: 1.8 Consensus size: 132
23041531 AACTTCAGGG
*
23041541 AGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTT-C
1 AGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTACAAT-TTCC
23041605 AACTTTCTCCACTGCTACTCAGGGAAACAAGGCTTGGTGGCTCAAATCTGCTTCCCACTATCTTG
65 AACTTTCTCCACTGCTACTCAGGGAAACAAGGCTTGGTGGCTCAAATCTGCTTCCCACTATCTTG
23041670 GAA
130 GAA
* * *
23041673 AGATAAGATTTTCCGTCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTATAATTTCCA
1 AGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTACAATTTCCA
* ** * *
23041738 ATTTTCTCCGTTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
66 ACTTTCTCCACTGCTACTCAGGGAAACAAGGCTTGGTGGCT
23041779 TAANNNNNNN
Statistics
Matches: 96, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
131 2 0.02
132 94 0.98
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (132 bp):
AGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTACAATTTCCA
ACTTTCTCCACTGCTACTCAGGGAAACAAGGCTTGGTGGCTCAAATCTGCTTCCCACTATCTTGG
AA
Done.