Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43060996
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2186021 characters in sequence are not A, C, G, or T
File 81 of 128
Found at i:26594269 original size:966 final size:966
Alignment explanation
Indices: 26592399--26594331 Score: 3866
Period size: 966 Copynumber: 2.0 Consensus size: 966
26592389 TAACTAATAA
26592399 TTTTTAAATTAAATTAAATTATAATAATTACAATTTTTTTATATTTTATGTTTACTGTTCTGTTC
1 TTTTTAAATTAAATTAAATTATAATAATTACAATTTTTTTATATTTTATGTTTACTGTTCTGTTC
26592464 GAATAATAACCCTATTTTAAAATTGGCACAATTTTTTTAACTAATAATTCTAAATTAAATTAAAA
66 GAATAATAACCCTATTTTAAAATTGGCACAATTTTTTTAACTAATAATTCTAAATTAAATTAAAA
26592529 TTATTTTTAAATTAGATTATAGATAGATATATTAGTTTTATATTTATATATTGCAATTTATATAT
131 TTATTTTTAAATTAGATTATAGATAGATATATTAGTTTTATATTTATATATTGCAATTTATATAT
26592594 AATATCAGTATAAACATGGAAATATTAAATTGTCCAAATTATTAAAGGTTAAAAACAATAATGTA
196 AATATCAGTATAAACATGGAAATATTAAATTGTCCAAATTATTAAAGGTTAAAAACAATAATGTA
26592659 TTTAAATTATTTATAGAAAAAAATTAATATATATATATATAATTAGACTATTTTCAAATAAGTGG
261 TTTAAATTATTTATAGAAAAAAATTAATATATATATATATAATTAGACTATTTTCAAATAAGTGG
26592724 ATTTGAACAAAATTTTAGACATATTTTAAATAATAATTTTATTTTTGACAAAAAGAGGATAGGCG
326 ATTTGAACAAAATTTTAGACATATTTTAAATAATAATTTTATTTTTGACAAAAAGAGGATAGGCG
26592789 AAATTCAAAATTCGAATCAGAAATTAGATGTCAACTAAAAATTTAATAAAAATATAAATTCTTTA
391 AAATTCAAAATTCGAATCAGAAATTAGATGTCAACTAAAAATTTAATAAAAATATAAATTCTTTA
26592854 CCATTACATCAATGATTTAATTTAAAGAATGGATTTAAAGTATATTGTATAAAAAATATAGATTG
456 CCATTACATCAATGATTTAATTTAAAGAATGGATTTAAAGTATATTGTATAAAAAATATAGATTG
26592919 TTATCCGGCAAAATTTAATTTCATCCATGACCATCTATATCACATGGGATATGATATGCATGTAT
521 TTATCCGGCAAAATTTAATTTCATCCATGACCATCTATATCACATGGGATATGATATGCATGTAT
26592984 ATAAACCATTGGTTAGTGGGTGGGTTGGATTTAGGTTTGTATTATTTTAGATAAAAAAAAGATTT
586 ATAAACCATTGGTTAGTGGGTGGGTTGGATTTAGGTTTGTATTATTTTAGATAAAAAAAAGATTT
26593049 ATATTATTTTGGGTTTGAATTTATAAATTTAAGCTGTTTATTATTTAGTTTTCGGTAATATTAAA
651 ATATTATTTTGGGTTTGAATTTATAAATTTAAGCTGTTTATTATTTAGTTTTCGGTAATATTAAA
26593114 TATAAAATTTTAATTTTTGGGTTAATGTACAAATTTGATACTATACTTTTGGTGAAAGTTTAAAC
716 TATAAAATTTTAATTTTTGGGTTAATGTACAAATTTGATACTATACTTTTGGTGAAAGTTTAAAC
26593179 TTGCTATTATAATTTATTTTGAAAGATATTTATCATTGTACTTTGTAACTAGAGATAAATTTATC
781 TTGCTATTATAATTTATTTTGAAAGATATTTATCATTGTACTTTGTAACTAGAGATAAATTTATC
26593244 ATTATATTTTATTTTGAATTTTGTGATTTTACTTTTATTTGATTGAAATTTATTACTCAAATTTA
846 ATTATATTTTATTTTGAATTTTGTGATTTTACTTTTATTTGATTGAAATTTATTACTCAAATTTA
26593309 ATTCAAAATAGCTTAAAACTTTTAATATTTTAATTTAATACTTAGAAATAATGAAT
911 ATTCAAAATAGCTTAAAACTTTTAATATTTTAATTTAATACTTAGAAATAATGAAT
26593365 TTTTTAAATTAAATTAAATTATAATAATTACAATTTTTTTATATTTTATGTTTACTGTTCTGTTC
1 TTTTTAAATTAAATTAAATTATAATAATTACAATTTTTTTATATTTTATGTTTACTGTTCTGTTC
26593430 GAATAATAACCCTATTTTAAAATTGGCACAATTTTTTTAACTAATAATTCTAAATTAAATTAAAA
66 GAATAATAACCCTATTTTAAAATTGGCACAATTTTTTTAACTAATAATTCTAAATTAAATTAAAA
26593495 TTATTTTTAAATTAGATTATAGATAGATATATTAGTTTTATATTTATATATTGCAATTTATATAT
131 TTATTTTTAAATTAGATTATAGATAGATATATTAGTTTTATATTTATATATTGCAATTTATATAT
26593560 AATATCAGTATAAACATGGAAATATTAAATTGTCCAAATTATTAAAGGTTAAAAACAATAATGTA
196 AATATCAGTATAAACATGGAAATATTAAATTGTCCAAATTATTAAAGGTTAAAAACAATAATGTA
26593625 TTTAAATTATTTATAGAAAAAAATTAATATATATATATATAATTAGACTATTTTCAAATAAGTGG
261 TTTAAATTATTTATAGAAAAAAATTAATATATATATATATAATTAGACTATTTTCAAATAAGTGG
26593690 ATTTGAACAAAATTTTAGACATATTTTAAATAATAATTTTATTTTTGACAAAAAGAGGATAGGCG
326 ATTTGAACAAAATTTTAGACATATTTTAAATAATAATTTTATTTTTGACAAAAAGAGGATAGGCG
26593755 AAATTCAAAATTCGAATCAGAAATTAGATGTCAACTAAAAATTTAATAAAAATATAAATTCTTTA
391 AAATTCAAAATTCGAATCAGAAATTAGATGTCAACTAAAAATTTAATAAAAATATAAATTCTTTA
26593820 CCATTACATCAATGATTTAATTTAAAGAATGGATTTAAAGTATATTGTATAAAAAATATAGATTG
456 CCATTACATCAATGATTTAATTTAAAGAATGGATTTAAAGTATATTGTATAAAAAATATAGATTG
26593885 TTATCCGGCAAAATTTAATTTCATCCATGACCATCTATATCACATGGGATATGATATGCATGTAT
521 TTATCCGGCAAAATTTAATTTCATCCATGACCATCTATATCACATGGGATATGATATGCATGTAT
26593950 ATAAACCATTGGTTAGTGGGTGGGTTGGATTTAGGTTTGTATTATTTTAGATAAAAAAAAGATTT
586 ATAAACCATTGGTTAGTGGGTGGGTTGGATTTAGGTTTGTATTATTTTAGATAAAAAAAAGATTT
26594015 ATATTATTTTGGGTTTGAATTTATAAATTTAAGCTGTTTATTATTTAGTTTTCGGTAATATTAAA
651 ATATTATTTTGGGTTTGAATTTATAAATTTAAGCTGTTTATTATTTAGTTTTCGGTAATATTAAA
26594080 TATAAAATTTTAATTTTTGGGTTAATGTACAAATTTGATACTATACTTTTGGTGAAAGTTTAAAC
716 TATAAAATTTTAATTTTTGGGTTAATGTACAAATTTGATACTATACTTTTGGTGAAAGTTTAAAC
26594145 TTGCTATTATAATTTATTTTGAAAGATATTTATCATTGTACTTTGTAACTAGAGATAAATTTATC
781 TTGCTATTATAATTTATTTTGAAAGATATTTATCATTGTACTTTGTAACTAGAGATAAATTTATC
26594210 ATTATATTTTATTTTGAATTTTGTGATTTTACTTTTATTTGATTGAAATTTATTACTCAAATTTA
846 ATTATATTTTATTTTGAATTTTGTGATTTTACTTTTATTTGATTGAAATTTATTACTCAAATTTA
26594275 ATTCAAAATAGCTTAAAACTTTTAATATTTTAATTTAATACTTAGAAATAATGAAT
911 ATTCAAAATAGCTTAAAACTTTTAATATTTTAATTTAATACTTAGAAATAATGAAT
26594331 T
1 T
26594332 AATATAATAC
Statistics
Matches: 967, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
966 967 1.00
ACGTcount: A:0.40, C:0.07, G:0.11, T:0.43
Consensus pattern (966 bp):
TTTTTAAATTAAATTAAATTATAATAATTACAATTTTTTTATATTTTATGTTTACTGTTCTGTTC
GAATAATAACCCTATTTTAAAATTGGCACAATTTTTTTAACTAATAATTCTAAATTAAATTAAAA
TTATTTTTAAATTAGATTATAGATAGATATATTAGTTTTATATTTATATATTGCAATTTATATAT
AATATCAGTATAAACATGGAAATATTAAATTGTCCAAATTATTAAAGGTTAAAAACAATAATGTA
TTTAAATTATTTATAGAAAAAAATTAATATATATATATATAATTAGACTATTTTCAAATAAGTGG
ATTTGAACAAAATTTTAGACATATTTTAAATAATAATTTTATTTTTGACAAAAAGAGGATAGGCG
AAATTCAAAATTCGAATCAGAAATTAGATGTCAACTAAAAATTTAATAAAAATATAAATTCTTTA
CCATTACATCAATGATTTAATTTAAAGAATGGATTTAAAGTATATTGTATAAAAAATATAGATTG
TTATCCGGCAAAATTTAATTTCATCCATGACCATCTATATCACATGGGATATGATATGCATGTAT
ATAAACCATTGGTTAGTGGGTGGGTTGGATTTAGGTTTGTATTATTTTAGATAAAAAAAAGATTT
ATATTATTTTGGGTTTGAATTTATAAATTTAAGCTGTTTATTATTTAGTTTTCGGTAATATTAAA
TATAAAATTTTAATTTTTGGGTTAATGTACAAATTTGATACTATACTTTTGGTGAAAGTTTAAAC
TTGCTATTATAATTTATTTTGAAAGATATTTATCATTGTACTTTGTAACTAGAGATAAATTTATC
ATTATATTTTATTTTGAATTTTGTGATTTTACTTTTATTTGATTGAAATTTATTACTCAAATTTA
ATTCAAAATAGCTTAAAACTTTTAATATTTTAATTTAATACTTAGAAATAATGAAT
Found at i:26595687 original size:22 final size:20
Alignment explanation
Indices: 26595662--26595708 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 20
26595652 ATATATTATG
*
26595662 TTATAAAAATTAATTACATTAA
1 TTATAAAAATTAAATA-A-TAA
*
26595684 TTATATAAATTAAATAATAA
1 TTATAAAAATTAAATAATAA
26595704 TTATA
1 TTATA
26595709 TATTTATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 8 0.35
21 1 0.04
22 14 0.61
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (20 bp):
TTATAAAAATTAAATAATAA
Found at i:26596643 original size:15 final size:16
Alignment explanation
Indices: 26596623--26596658 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
26596613 TTTTTTTGAG
*
26596623 TTTTTAA-AAAAATTA
1 TTTTTAATAAAAATGA
26596638 TTTTTAATAAAAATGA
1 TTTTTAATAAAAATGA
26596654 TTTTT
1 TTTTT
26596659 TTTATTTTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (16 bp):
TTTTTAATAAAAATGA
Found at i:26600041 original size:434 final size:433
Alignment explanation
Indices: 26598404--26601650 Score: 3754
Period size: 434 Copynumber: 7.6 Consensus size: 433
26598394 ACCAGCCTAA
* *
26598404 GGCTAAATGGGGTTTA-TTCGAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAATGGATTT
1 GGCTAAATGGGGTTTAGTT-AAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTT
* * * *
26598468 GAATGTAATGGTGATAAGTGAAAATGAGGAAGAACTTAAAAAGTAATTGAACCAAAAAATAAGGA
65 GAATGTAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAAGAAATTGAACC-AAAAATAAGGA
* ** ** * *
26598533 AATCGAAAAAAAAATGAAAGTAAACTTGAATAGCTACTGATGATTGAAA-AGAAAAGAATTATTA
129 AAT-GGAAAAAAAATGGCAGTAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGTTT
26598597 TTAATTCTATT-CAAGTGTGTTTTTTCCAAGCCACCATTACAAGGTATTTATACAT-TTTTCATA
193 TTAATTCTATTAC-AGTGTGTTTTTTCCAAGCCACCATTACAAGGTATTTATAC-TCTTTTCATA
* *
26598660 TGCCAAATTTAGCATGATTCCTTCTAAGATTATGCCTAACAACCAACTAAATTC-AATTTTTTTT
256 TGCCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCAAATTTTTTTT
* * * **
26598724 ATATTCTTAGAGTTTGACAAATTCACAATCTGATTTTTAATCAACCACTAATTCAACAACTTTTT
321 CTATTCATAGAGTTTGACAAATTCACAATCTGATTTTTAATCAGCCACTAATTCTGCAAC-TTTT
* * *
26598789 GATTTGGCCCCTTTTATTGCTTCTCGTTCCAATTTAG-CCAATTTGCTT
385 CAATTGGCCCATTTTATTGCTTCTCGTTCCAATTTAGCCCAATTTGCTT
* * * *
26598837 GACTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAATGGATTTC
1 GGCTAAATGGGGTTTAGTTAAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTTG
* * * **
26598902 AATGTAAAGATGATAGGTGAAAAGGAGAAAGGACTTAAAAAGAAATTGAATTAAAAATAAGGAAA
66 AATGTAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAAGAAATTGAACCAAAAATAAGGAAA
* *
26598967 TGGGAAAAAAAA-GGCAGTAAACTTGAATAGCTACTGATGCATG--A-A-AAAAGAATTGCTTTT
131 T-GGAAAAAAAATGGCAGTAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGTTTTT
* * * * *
26599027 AATTCTATTTCACTGTGTTTTTTCCAAGCCACCATTACAAGGTATTTACACACTTTTCATCTGCC
195 AATTCTATTACAGTGTGTTTTTTCCAAGCCACCATTACAAGGTATTTATACTCTTTTCATATGCC
* * * *
26599092 AAATTTAGCATGATTACTCATATGATTATGCCTAACAACCAACAAAAAT-AAGATTTTTTTTCTA
260 AAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCAA-ATTTTTTTTCTA
* * * * * * *
26599156 TTCATAGAGTTTGAAAAAATCATAATATGATTTTTTATCAGCCTCTAATTCTTCAACTTTTCAAT
324 TTCATAGAGTTTGACAAATTCACAATCTGATTTTTAATCAGCCACTAATTCTGCAACTTTTCAA-
* * * *
26599221 TTGACCTATTTTATTGTTTC-CTGTTCCAATTGAGCCCAATTTGCTT
388 TTGGCCCATTTTATTGCTTCTC-GTTCCAATTTAGCCCAATTTGCTT
* * * * *
26599267 GGCTAAATGGGTTTTAGTTTAGCATGAAATTAATCATACTCGATTGAGATTTAAAATTGGATTTG
1 GGCTAAATGGGGTTTAGTTAAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTTG
* * * * *
26599332 ATTGTAATGGTGATAAGTGAAGAGGCGAATA-GAATTAAAAAGAAATTTAACCAAAAATAAGGAA
66 AATGTAATGGTGATAAGTGAAAAGGAGAA-AGGACTTAAAAAGAAATTGAACCAAAAATAAGGAA
** *
26599396 ATGGAAAAAAAATTGGCAACAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAATAATTGTTTT
130 ATGGAAAAAAAA-TGGCAGTAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGTTTT
* * * * *
26599461 TAATTCTATTCCAGTGTGTTTTTTTTCCAAGTCACCATTACTAGGTATTTATACACTTTTCATCT
194 TAATTCTATTACAGTGTG--TTTTTTCCAAGCCACCATTACAAGGTATTTATACTCTTTTCATAT
* ** *
26599526 GCCAAATTTAGCATGATTCCTCCTAAGATTAGGCCTAACAATTAACTAAAATCAAATTTTCTTTC
257 GCCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCAAATTTTTTTTC
* * * * * *
26599591 TATTCATAGGGTTTGACAAATTCACAATTTGGTTTTTAATCAGTCACTAGTTCTCCAAC-TTTCA
322 TATTCATAGAGTTTGACAAATTCACAATCTGATTTTTAATCAGCCACTAATTCTGCAACTTTTCA
* * *
26599655 ATTCGCCCATTTTATTACTTCTCGTTCCAATTTAGCCCAATTTTCTT
387 ATTGGCCCATTTTATTGCTTCTCGTTCCAATTTAGCCCAATTTGCTT
* * * * * * * *
26599702 GACCAAATTGGATTTAGTTAAGCATGAAACTAATCACACTCCATTGGGGTTGAAAAGTGGATTTG
1 GGCTAAATGGGGTTTAGTTAAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTTG
** * *
26599767 AACATAATGGTGATAAGTGAAAGGGAGAAAGGACTTAAAAAGCAATTGAACCAAAAATAAGGAAA
66 AATGTAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAAGAAATTGAACCAAAAATAAGGAAA
* *
26599832 TGGAAAAAAAATGGCAGTAAACTTGAATAGCTACTAATACGTGAAAGAGAAAAGAATTGTTTTTA
131 TGGAAAAAAAATGGCAGTAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGTTTTTA
* * * * * *
26599897 ATTCTATTACAATGTGCTTTTTCGAAGCCACCCTTACAAGGTATTTGT-CTTTTTTTTTCATATG
196 ATTCTATTACAGTGTGTTTTTTCCAAGCCACCATTACAAGGTATTTATAC---TCTTTTCATATG
** *
26599961 TAAAATTTAGCATGATTCCTCCTAAGATTATGTCTAACAACCAACTAAAATCAAATTTTTTTTCT
258 CCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCAAATTTTTTTTCT
* * * * * *
26600026 TTTAATAGAGTTTGACAAATTCACAGTCTGGTTCTTAATCAACCACTAATTCTGCAACTTTTCAA
323 ATTCATAGAGTTTGACAAATTCACAATCTGATTTTTAATCAGCCACTAATTCTGCAACTTTTCAA
* * * *
26600091 TTTGACCTATTTTATTTCTT-TCCGTTTCAATTTAGCCCAATTTGCTT
388 -TTGGCCCATTTTATTGCTTCT-CGTTCCAATTTAGCCCAATTTGCTT
* * * *
26600138 GGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTTGATTAGGGTTTAAAAGTGGGTTTG
1 GGCTAAATGGGGTTTAGTTAAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTTG
* ** * *
26600203 AATGTAATGGTGATAGGTGAAAAGGAGAAAGGACTTAAAAATTAATTGAATCAAAAATAAAGAAA
66 AATGTAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAAGAAATTGAACCAAAAATAAGGAAA
* * * *
26600268 TGG--AAAAAATGGCAGTAAACTTGAATATCTATTGATGTGTGAAAGAGATAAGAATTGTTTTTA
131 TGGAAAAAAAATGGCAGTAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGTTTTTA
* ** *
26600331 ATTCTATTACAGTGTGTTTTTTCAAAGCCA-CAACACAAGATATTTATACTCTTTTCATATGCCA
196 ATTCTATTACAGTGTGTTTTTTCCAAGCCACCATTACAAGGTATTTATACTCTTTTCATATGCCA
* *
26600395 AATTTAGCATGA-T--TCC----A--A---CTAA-AATC-AGT----T----TTTTTTTTCTATT
261 AATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCAAATTTTTTTTCTATT
* * * * * * *
26600438 CATAGAATTTGACAAATTCACAATTTGATTTTTAATGAGTCATTAATTATGCAATTTTTCAATTT
326 CATAGAGTTTGACAAATTCACAATCTGATTTTTAATCAGCCACTAATTCTGCAACTTTTCAA-TT
* *
26600503 GGCCC-TTTTATTGTTTCTCG-TCCGAATTTATCCCAATTTGCTT
390 GGCCCATTTTATTGCTTCTCGTTCC-AATTTAGCCCAATTTGCTT
*
26600546 GGCTAAATGGGGTTTAGTTCAA-CATGAAATTAATCATACTCGATTGGGGTTTAAAAGTCGATTT
1 GGCTAAATGGGGTTTAGTT-AAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTT
* * * * * *
26600610 GAACGTAATTGTGATAGGTGAAAAAGAGAAAGGACTT-AAAAGGAATTGAACCAAAAATAAAGAA
65 GAATGTAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAAGAAATTGAACCAAAAATAAGGAA
* * * * * *
26600674 ACGG-AAAAAAATGCCAGTAAACTTGAATAGCTATTGATGTGTGAAAGAGAAAAGAATTATTATT
130 ATGGAAAAAAAATGGCAGTAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGTTTTT
* *
26600738 AATTCTATTATAGTGTGTTTTTTCAAAGCCACCA-TACAAGGTAGCTATTTATACTCTTTTCATA
195 AATTCTATTACAGTGTGTTTTTTCCAAGCCACCATTACAA-G--G-TATTTATACTCTTTTCATA
* * *
26600802 TGCCAAATTTAGCGTGATTCCTCCTTAGGTTATGCCTAACAACCAACTAAAATCAAA-TTTTTTT
256 TGCCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCAAATTTTTTTT
* ** * * *
26600866 CTATTCATAGAGTTTGACAAATTCACAATCTAATTAGTAATCAGTCATTCATTCTGCAACTTTTC
321 CTATTCATAGAGTTTGACAAATTCACAATCTGATTTTTAATCAGCCACTAATTCTGCAACTTTTC
* * *
26600931 ATTTTGGCCCTTTTTATTGCTTC-CTGTTCCAATTTAGCCCAATTAGCTT
386 A-ATTGGCCCATTTTATTGCTTCTC-GTTCCAATTTAGCCCAATTTGCTT
* ** * * * *
26600980 GGGTAAATGATGTTTAGTTAAGAATGAAATTAATCATACTCTATTGGGGATTAAAAGTGGATTTC
1 GGCTAAATGGGGTTTAGTTAAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTTG
* * ** * **
26601045 AATGTAATTGTGATAGGTGAAAAGGAGAAAAAAATTTTAAA-AAATTGAACCAAAAATAAGGAAA
66 AATGTAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAAGAAATTGAACCAAAAATAAGGAAA
* * *
26601109 TGG--AAAAAATGGCAGTAAACTTGAATAGCTGCTGATGCATGAAAGAGAAAAGAATTCTTTTTA
131 TGGAAAAAAAATGGCAGTAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGTTTTTA
* * * **
26601172 A-TCTATTCCAGTGTGTTTTTT-AAAGCCACCATT-CAAGGTATTTATACTATTTTCATATATCA
196 ATTCTATTACAGTGTGTTTTTTCCAAGCCACCATTACAAGGTATTTATACTCTTTTCATATGCCA
* * * *
26601234 AATTTAACATGATTCCTCCTAAGTTTATTCCTAACAACCAACTAAAATCAGAATTTTTATT-TAT
261 AATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCA-AATTTTTTTTCTAT
* * * * * * *
26601298 TTATAAAGTTTGA-AAGATTCACAATCTAATTTTTAATCAACCGA-TAATTTTGTAACTTTTTAA
325 TCATAGAGTTTGACAA-ATTCACAATCTGATTTTTAATCAGCC-ACTAATTCTGCAACTTTTCAA
* *
26601361 TTTGGCCCCTTTTATTGCTT-TCCATTCCAATTTAGCCCAATTTGCTT
388 -TTGGCCCATTTTATTGCTTCT-CGTTCCAATTTAGCCCAATTTGCTT
* * *
26601408 GGCTAAATGGGGTTTAGTTGAGTATGAAATTAATCATACTCGATTGAGGTTTAAAAGTGGATTTG
1 GGCTAAATGGGGTTTAGTTAAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTTG
* *** * * *
26601473 ATTGTAACAATGATAAGTGAAAATGAGAAAGGACTTAAAAAGCAATTGAA-CAGAAAATAATGAA
66 AATGTAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAAGAAATTGAACCA-AAAATAAGGAA
* *
26601537 ATGGAAAAAAAATTGGCTGTAAACTTGAATAGCTACAGATGCGTGAAAGAGAAAAGAATTGTTTT
130 ATGGAAAAAAAA-TGGCAGTAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGTTTT
*
26601602 TAATTCTATTATAGTGTGTTTTTTTCCAAGCCACCATTACAAGGTATTT
194 TAATTCTATTACAGTGTG-TTTTTTCCAAGCCACCATTACAAGGTATTT
26601651 GTAATAGGCC
Statistics
Matches: 2398, Mismatches: 335, Indels: 159
0.83 0.12 0.05
Matches are distributed among these distances:
407 29 0.01
408 208 0.09
409 73 0.03
412 35 0.01
413 2 0.00
415 3 0.00
417 2 0.00
418 3 0.00
419 4 0.00
421 1 0.00
422 1 0.00
424 5 0.00
425 3 0.00
426 2 0.00
427 68 0.03
428 304 0.13
429 127 0.05
430 126 0.05
431 100 0.04
432 118 0.05
433 256 0.11
434 407 0.17
435 207 0.09
436 168 0.07
437 144 0.06
438 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.35
Consensus pattern (433 bp):
GGCTAAATGGGGTTTAGTTAAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTTG
AATGTAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAAGAAATTGAACCAAAAATAAGGAAA
TGGAAAAAAAATGGCAGTAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGTTTTTA
ATTCTATTACAGTGTGTTTTTTCCAAGCCACCATTACAAGGTATTTATACTCTTTTCATATGCCA
AATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCAAATTTTTTTTCTATT
CATAGAGTTTGACAAATTCACAATCTGATTTTTAATCAGCCACTAATTCTGCAACTTTTCAATTG
GCCCATTTTATTGCTTCTCGTTCCAATTTAGCCCAATTTGCTT
Found at i:26603173 original size:23 final size:23
Alignment explanation
Indices: 26603136--26603182 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 23
26603126 CATTTCCCCC
26603136 TTATAATTTACATTTTTTTTATTT
1 TTATAATTTACA-TTTTTTTATTT
*
26603160 TTATACTTT-CATTTTTTTATTT
1 TTATAATTTACATTTTTTTATTT
26603182 T
1 T
26603183 CATTAAATAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 12 0.55
23 2 0.09
24 8 0.36
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.72
Consensus pattern (23 bp):
TTATAATTTACATTTTTTTATTT
Found at i:26611122 original size:94 final size:94
Alignment explanation
Indices: 26610961--26612003 Score: 1057
Period size: 94 Copynumber: 11.3 Consensus size: 94
26610951 GATTCCAGTC
* * * * *
26610961 CCCCTGAAGTTGTAGTGGGTTGGAATAAAGCTACAATGGCGAATCTTATCTCTCTGAAGTTACAG
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCAG
* *
26611026 TGGAGCAAGGTGAAGCTATAAATCCTATA
66 TGGAGCAAGATGAAGCTACAAATCCTATA
* * * * * *
26611055 CCCCTAAAGTTGCAGTGGGTTAGAACT-AAGCTACCATAGCGAATATTATGTCCTTGAAGTTGCA
1 CCCCTGAAGTTGCAGTGGGTTGGAA-TGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCA
26611119 GTGGAGCAAGATGAAGCTACAAATCCTATA
65 GTGGAGCAAGATGAAGCTACAAATCCTATA
* * ** * *
26611149 CTCCTGAAGTTGCAATGGGTTGGAATGAAATTACCATAGCG-ACCTTATCTCCCTGAAGTTGCAG
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCAG
* *
26611213 TGGAGTAAGATGAAGTTACAAATCCTATA
66 TGGAGCAAGATGAAGCTACAAATCCTATA
* * * * * *
26611242 CCCCTGAAGTTGCAAT-GGTTGGAATGAAACTACCATAGTGAATCTTATCTCCCTAAAGTTGCAA
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCAG
*
26611306 TGGAGCAAGATGAAGCTACAAATCCTAAA
66 TGGAGCAAGATGAAGCTACAAATCCTATA
* * * ** * * * * * * *
26611335 CCCCTAAAGTTGTAGTGGGTTTGAATGAAATTACCATAGTGAATCTTATCTTCTTTAAATTACAG
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCAG
*
26611400 T-GAACAAGATGAAGCTACAAATCCTATA
66 TGGAGCAAGATGAAGCTACAAATCCTATA
* * * * ** * * * **
26611428 CCCTTGAAGTTG-TGTGGGTTGGAATAAAGCTACCACGGTGAATCTTATCTCCTTAAAGTTATAG
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCAG
*
26611492 TGGAGAAAGATGAAGCTACAAATCCTATA
66 TGGAGCAAGATGAAGCTACAAATCCTATA
* * * * * * * *
26611521 CACCTGAAGTTACAATAGGTTGGAATGAAGCTATAATAGCAAATCTTATCTCCCTAAAGTTGTAG
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCAG
*
26611586 TGGAGCAAGATGAAGCTACAAATCCTACA
66 TGGAGCAAGATGAAGCTACAAATCCTATA
* * * * * * ** * *
26611615 CTCCTGAAGTAGCAGTAGGTTGGAATTAAGCTAAAATAGCAAATCTTAAGTCCCTGAAATTGTAG
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCAG
* *
26611680 TGGAGTAAGATGAAGCTACAAATCCTGTA
66 TGGAGCAAGATGAAGCTACAAATCCTATA
* * *
26611709 CCCCTGAAGTTGCAGTGGGTT-G--TAAAGCTACAATAGC-AACCTTATATCCCTGAAGTTGCAG
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCAG
* * * *
26611770 TGAAGCAACATAAAGCTTCAAATCCTAT-
66 TGGAGCAAGATGAAGCTACAAATCCTATA
*
26611798 CCCTCTG-A-----A----GTTGGAATGAAGCTACAATAGTGAATCTTATCTCCCTGAAGTTGCA
1 CCC-CTGAAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCA
* * *
26611853 GTGGAGCAAGATAAAGCTACAAATTCTATG
65 GTGGAGCAAGATGAAGCTACAAATCCTATA
* * * *
26611883 CCCCT-ACAATTGTAGTGGGTTGGAATGAAACTACAATAGCGAATTTTATCTCCCTGAAGTTGCA
1 CCCCTGA-AGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCA
*
26611947 ATGGAGCAAGATGAAGCTACAAATCCTATA
65 GTGGAGCAAGATGAAGCTACAAATCCTATA
** ***
26611977 CCATTGAAGTTTTTGTGGGTTGGAATG
1 CCCCTGAAGTTGCAGTGGGTTGGAATG
26612004 GAATTATAAC
Statistics
Matches: 798, Mismatches: 127, Indels: 48
0.82 0.13 0.05
Matches are distributed among these distances:
80 3 0.00
81 1 0.00
83 13 0.02
84 49 0.06
85 4 0.01
89 4 0.01
90 45 0.06
91 13 0.02
92 64 0.08
93 191 0.24
94 409 0.51
95 2 0.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (94 bp):
CCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCAG
TGGAGCAAGATGAAGCTACAAATCCTATA
Found at i:26611177 original size:44 final size:44
Alignment explanation
Indices: 26611129--26611274 Score: 120
Period size: 49 Copynumber: 3.2 Consensus size: 44
26611119 GTGGAGCAAG
*
26611129 ATGAAGCTACAAATCCTATACTCCTGAAGTTGCAATGGGTTGGA
1 ATGAAACTACAAATCCTATACTCCTGAAGTTGCAATGGGTTGGA
* * **
26611173 ATGAAATTACCATAGCGA-CCT-TATCTCCCTGAAGTTGCAGTGGAGTAAG-
1 ATGAAACTA-CA-A---ATCCTATA-CT-CCTGAAGTTGCAATGG-GTTGGA
** *
26611222 ATGAAGTTACAAATCCTATACCCCTGAAGTTGCAAT-GGTTGGA
1 ATGAAACTACAAATCCTATACTCCTGAAGTTGCAATGGGTTGGA
26611265 ATGAAACTAC
1 ATGAAACTAC
26611275 CATAGTGAAT
Statistics
Matches: 79, Mismatches: 12, Indels: 23
0.69 0.11 0.20
Matches are distributed among these distances:
42 3 0.04
43 9 0.11
44 21 0.27
45 6 0.08
46 3 0.04
47 3 0.04
48 7 0.09
49 24 0.30
50 3 0.04
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (44 bp):
ATGAAACTACAAATCCTATACTCCTGAAGTTGCAATGGGTTGGA
Found at i:26611208 original size:49 final size:48
Alignment explanation
Indices: 26611151--26611308 Score: 143
Period size: 49 Copynumber: 3.3 Consensus size: 48
26611141 ATCCTATACT
26611151 CCTGAAGTTGCAATGGGTTGGAATGAAATTACCATAGCGACCTTATCTC
1 CCTGAAGTTGCAATGGGTTGGAATGAAATTACCATAG-GACCTTATCTC
* ** *
26611200 CCTGAAGTTGCAGTGGAGTAAG-ATGAAGTTA-CA-A--ATCC-TATAC-C
1 CCTGAAGTTGCAATGG-GTTGGAATGAAATTACCATAGGA-CCTTAT-CTC
* *
26611244 CCTGAAGTTGCAAT-GGTTGGAATGAAACTACCATAGTGAATCTTATCTC
1 CCTGAAGTTGCAATGGGTTGGAATGAAATTACCATAG-G-ACCTTATCTC
*
26611293 CCTAAAGTTGCAATGG
1 CCTGAAGTTGCAATGG
26611309 AGCAAGATGA
Statistics
Matches: 85, Mismatches: 11, Indels: 25
0.70 0.09 0.21
Matches are distributed among these distances:
42 3 0.04
43 8 0.09
44 20 0.24
45 4 0.05
47 1 0.01
48 4 0.05
49 41 0.48
50 4 0.05
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (48 bp):
CCTGAAGTTGCAATGGGTTGGAATGAAATTACCATAGGACCTTATCTC
Found at i:26611363 original size:186 final size:187
Alignment explanation
Indices: 26610961--26612002 Score: 1059
Period size: 186 Copynumber: 5.6 Consensus size: 187
26610951 GATTCCAGTC
* * * *
26610961 CCCCTGAAGTTGTAGTGGGTTGGAAT-AAAGCTACAATGGCGAATCTTATCTCTCTGAAGTTACA
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAA-CTACAATAGCGAATCTTATCTCCCTGAAGTTGCA
* * * *
26611025 GTGGAGCAAGGTGAAGCTATAAATCCTATACCCCTAAAGTTGCAGTGGGTTAGAACTAAGCTACC
65 GTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTGGAA-TAAGCTACC
* * * * *
26611090 ATAGCGAATATTATGTCCTTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATA
129 ATAGTGAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATA
* * * * *
26611149 CTCCTGAAGTTGCAATGGGTTGGAATGAAATTACCATAGCG-ACCTTATCTCCCTGAAGTTGCAG
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAACTACAATAGCGAATCTTATCTCCCTGAAGTTGCAG
* * * *
26611213 TGGAGTAAGATGAAGTTACAAATCCTATACCCCTGAAGTTGCAAT-GGTTGGAATGAAACTACCA
66 TGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTGGAAT-AAGCTACCA
* *
26611277 TAGTGAATCTTATCTCCCTAAAGTTGCAATGGAGCAAGATGAAGCTACAAATCCTAAA
130 TAGTGAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATA
* * * * * * * * * * *
26611335 CCCCTAAAGTTGTAGTGGGTTTGAATGAAATTACCATAGTGAATCTTATCTTCTTTAAATTACAG
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAACTACAATAGCGAATCTTATCTCCCTGAAGTTGCAG
* * *
26611400 T-GAACAAGATGAAGCTACAAATCCTATACCCTTGAAGTTG-TGTGGGTTGGAATAAAGCTACCA
66 TGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTGGAAT-AAGCTACCA
** * ** *
26611463 CGGTGAATCTTATCTCCTTAAAGTTATAGTGGAGAAAGATGAAGCTACAAATCCTATA
130 TAGTGAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATA
* * * * * * * * *
26611521 CACCTGAAGTTACAATAGGTTGGAATGAAGCTATAATAGCAAATCTTATCTCCCTAAAGTTGTAG
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAACTACAATAGCGAATCTTATCTCCCTGAAGTTGCAG
* * * * **
26611586 TGGAGCAAGATGAAGCTACAAATCCTACACTCCTGAAGTAGCAGTAGGTTGGAATTAAGCTAAAA
66 TGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTGGAA-TAAGCTACCA
** ** * * *
26611651 TAGCAAATCTTAAGTCCCTGAAA-TTGTAGTGGAGTAAGATGAAGCTACAAATCCTGTA
130 TAGTGAATCTTATCTCCCT-AAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATA
* *
26611709 CCCCTGAAGTTGCAGTGGGTT-G--T-AAAGCTACAATAGC-AACCTTATATCCCTGAAGTTGCA
1 CCCCTGAAGTTGCAGTGGGTTGGAATGAAA-CTACAATAGCGAATCTTATCTCCCTGAAGTTGCA
* * * *
26611769 GTGAAGCAACATAAAGCTTCAAATCCTAT-CCCTCTG-A-----A----GTTGGAATGAAGCTAC
65 GTGGAGCAAGATGAAGCTACAAATCCTATACCC-CTGAAGTTGCAGTGGGTTGGAAT-AAGCTAC
* * * * *
26611823 AATAGTGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATAAAGCTACAAATTCTATG
128 CATAGTGAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATA
* * *
26611883 CCCCT-ACAATTGTAGTGGGTTGGAATGAAACTACAATAGCGAATTTTATCTCCCTGAAGTTGCA
1 CCCCTGA-AGTTGCAGTGGGTTGGAATGAAACTACAATAGCGAATCTTATCTCCCTGAAGTTGCA
* ** ***
26611947 ATGGAGCAAGATGAAGCTACAAATCCTATACCATTGAAGTTTTTGTGGGTTGGAAT
65 GTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTGGAAT
26612003 GGAATTATAA
Statistics
Matches: 694, Mismatches: 131, Indels: 58
0.79 0.15 0.07
Matches are distributed among these distances:
173 4 0.01
174 76 0.11
175 1 0.00
177 11 0.02
178 50 0.07
179 3 0.00
183 3 0.00
184 48 0.07
185 12 0.02
186 250 0.36
187 112 0.16
188 117 0.17
189 7 0.01
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (187 bp):
CCCCTGAAGTTGCAGTGGGTTGGAATGAAACTACAATAGCGAATCTTATCTCCCTGAAGTTGCAG
TGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTTGGAATAAGCTACCAT
AGTGAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATA
Found at i:26612028 original size:94 final size:94
Alignment explanation
Indices: 26611807--26612057 Score: 252
Period size: 94 Copynumber: 2.7 Consensus size: 94
26611797 TCCCTCTGAA
* * *** * *
26611807 GTTGGAATGAAGCTACAATAGTGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATAAAGCTA
1 GTTGGAATGAAACTACAACAACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAAGATGAAGCTA
* * *
26611872 CAAATTCTATGCCCCTACAATTGTAGTGG
66 CAAATCCTATACCACTACAATTGTAGTGG
* * * *
26611901 GTTGGAATGAAACTACAATAGCGAATTTTATCTCCCTGAAGTTGCAATGGAGCAAGATGAAGCTA
1 GTTGGAATGAAACTACAACAACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAAGATGAAGCTA
* * * *
26611966 CAAATCCTATACCATTGA-AGTTTTTGTGG
66 CAAATCCTATACCACT-ACAATTGTAGTGG
* * * * * * * *
26611995 GTTGGAATGGAATTATAACAACAAATCTCATCTCCTTAAAGTTGAAATTGAGCAAGATGAAGC
1 GTTGGAATGAAACTACAACAACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAAGATGAAGC
26612058 CATGATACTA
Statistics
Matches: 132, Mismatches: 24, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
94 131 0.99
95 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.28
Consensus pattern (94 bp):
GTTGGAATGAAACTACAACAACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAAGATGAAGCTA
CAAATCCTATACCACTACAATTGTAGTGG
Found at i:26612292 original size:5 final size:5
Alignment explanation
Indices: 26612282--26612311 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
26612272 TTTGTCCGAC
26612282 CCAAA CCAAA CCAAA CCAAA CCAAA CCAAA
1 CCAAA CCAAA CCAAA CCAAA CCAAA CCAAA
26612312 AAAACATAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.60, C:0.40, G:0.00, T:0.00
Consensus pattern (5 bp):
CCAAA
Found at i:26613705 original size:7 final size:8
Alignment explanation
Indices: 26613688--26613712 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
26613678 CCCTTCCTTC
26613688 TTTATTTT
1 TTTATTTT
26613696 TTTATTTT
1 TTTATTTT
26613704 TTTATTTT
1 TTTATTTT
26613712 T
1 T
26613713 CAACATTTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTATTTT
Found at i:26617007 original size:3 final size:3
Alignment explanation
Indices: 26616999--26617081 Score: 96
Period size: 3 Copynumber: 28.0 Consensus size: 3
26616989 AAACATAAAC
** * *
26616999 AAT AAT AAT AGC AAA AAT AGT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
26617047 AAT AAC AAT ACT AAT AAT AAT AAT AA- GAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
26617082 TAATTAAACA
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
2 1 0.02
3 65 0.98
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:26618678 original size:50 final size:50
Alignment explanation
Indices: 26618565--26618706 Score: 140
Period size: 50 Copynumber: 2.8 Consensus size: 50
26618555 ATGTTTAACT
* * **
26618565 ACAATGTCGGGGAAGTAAGATTCGCTGTCGTAGCTTCAATATATTCCATT
1 ACAATGTCGGGGAAGTAAGATTCGCTGTCGTAGCTTCAATCTATTCAACC
* * * * * * *
26618615 ATACTGCCAGGGAAGTAAGATTCACTGTTGTAGCTTCAATCTATTTAACC
1 ACAATGTCGGGGAAGTAAGATTCGCTGTCGTAGCTTCAATCTATTCAACC
* ** **
26618665 GCAATGTCGGGGAAGCGAGATTCGCCATCGTAGCTTCAATCT
1 ACAATGTCGGGGAAGTAAGATTCGCTGTCGTAGCTTCAATCT
26618707 GTTCCACTGC
Statistics
Matches: 70, Mismatches: 22, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
50 70 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (50 bp):
ACAATGTCGGGGAAGTAAGATTCGCTGTCGTAGCTTCAATCTATTCAACC
Found at i:26618852 original size:172 final size:172
Alignment explanation
Indices: 26618566--26618890 Score: 415
Period size: 172 Copynumber: 1.9 Consensus size: 172
26618556 TGTTTAACTA
* * *
26618566 CAATGTCGGGGAAGTAAGATTCGCTGTCGTAGCTTCAATATATTCCATTATACTGCCAGGGAAGT
1 CAATGTCGGGGAAGGAAGATTCGCCGTCGTAGCTTCAATATATTCCATCATACTGCCAGGGAAGT
* *
26618631 AAGATTCACTGTTGTAGCTTCAATCTATTTAACCGCAATGTCGGGGAAGCGAGATTCGCCATCGT
66 AAGATTCACTGTTGTAGCCTCAATATATTTAACCGCAATGTCGGGGAAGCGAGATTCGCCATCGT
*
26618696 AGCTTCAATCTGTTCCACTGCACCGCTAGGGAAATGAGATTG
131 AGCTTCAATCTATTCCACTGCACCGCTAGGGAAATGAGATTG
* * *
26618738 CAATGTCGGGGAAGGAAGATTCTCCGAT-GTAGCTTCAATCTATTCCACTGCAT-C-GCCTGGGA
1 CAATGTCGGGGAAGGAAGATTCGCCG-TCGTAGCTTCAATATATTCCA-T-CATACTGCCAGGGA
** * ** * **
26618800 AGGTAAGATTCGTTGTTGTGGCCTCAATAT-TTTAATTGCAATGTCGGGGAAGCGAGATTTGCTG
63 A-GTAAGATTCACTGTTGTAGCCTCAATATATTTAACCGCAATGTCGGGGAAGCGAGATTCGCCA
* *
26618864 TTGTGGCTTCAATCTATTCCACTGCAC
127 TCGTAGCTTCAATCTATTCCACTGCAC
26618891 TACCAGGGAA
Statistics
Matches: 130, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
172 102 0.78
173 26 0.20
174 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (172 bp):
CAATGTCGGGGAAGGAAGATTCGCCGTCGTAGCTTCAATATATTCCATCATACTGCCAGGGAAGT
AAGATTCACTGTTGTAGCCTCAATATATTTAACCGCAATGTCGGGGAAGCGAGATTCGCCATCGT
AGCTTCAATCTATTCCACTGCACCGCTAGGGAAATGAGATTG
Found at i:26618974 original size:44 final size:43
Alignment explanation
Indices: 26618926--26619257 Score: 184
Period size: 44 Copynumber: 7.6 Consensus size: 43
26618916 CTTCGATCTG
*
26618926 CTCCACTACTGCTTAGGGAGACAGGATCTGCAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGAGATAGGATCT-CAATCTTCAACCTA
* * *
26618970 CTCCACTACTGCCTAGGGAGATAGGA-CT-AATGGCTTAAACATGCTT
1 CTCCACTACTGCTTAGGGAGATAGGATCTCAAT--CTTCAAC---CTA
* * ** *
26619016 CTCCACTA-T-CTT-GGGAAGATAAGAT-TCACCATCTTCGATATG
1 CTCCACTACTGCTTAGGG-AGATAGGATCTCA--ATCTTCAACCTA
* * *
26619058 TTCCGCTACTGCTTAGGGAGACAGGATCTGCAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGAGATAGGATCT-CAATCTTCAACCTA
* * *
26619102 CTCCACTACTGC-TAGGGAGATAGGA-CT-AATGGCTTAAATCTG
1 CTCCACTACTGCTTAGGGAGATAGGATCTCAAT--CTTCAACCTA
* * * * * *
26619144 CTTCTCTACTGTCTT-GGGAAGATAAGAT-TCACCATCTTCGATCTG
1 CTCCACTACTG-CTTAGGG-AGATAGGATCTCA--ATCTTCAACCTA
* * * ** *
26619189 CTCCACTACTGCCTAGGGTGACAAAATCTGTAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGAGATAGGATCT-CAATCTTCAACCTA
26619233 CTCCACTACTGC-TAGGGAGATAGGA
1 CTCCACTACTGCTTAGGGAGATAGGA
26619258 CTAATGGCTT
Statistics
Matches: 217, Mismatches: 44, Indels: 55
0.69 0.14 0.17
Matches are distributed among these distances:
40 3 0.01
41 3 0.01
42 25 0.12
43 37 0.17
44 100 0.46
45 32 0.15
46 13 0.06
47 4 0.02
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.28
Consensus pattern (43 bp):
CTCCACTACTGCTTAGGGAGATAGGATCTCAATCTTCAACCTA
Found at i:26619178 original size:131 final size:131
Alignment explanation
Indices: 26618915--26619278 Score: 595
Period size: 131 Copynumber: 2.8 Consensus size: 131
26618905 AGATTTGTCG
26618915 TCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTGCAATCTTCAACCTACTCCACTACT
1 TCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTGCAATCTTCAACCTACTCCACTACT
26618980 GCCTAGGGAGATAGGACTAATGGCTTAAA-CATGCTTCTCCACTATCTTGGGAAGATAAGATTCA
66 G-CTAGGGAGATAGGACTAATGGCTTAAATC-TGCTTCTCCACTATCTTGGGAAGATAAGATTCA
26619044 CCA
129 CCA
* * *
26619047 TCTTCGATATGTTCCGCTACTGCTTAGGGAGACAGGATCTGCAATCTTCAACCTACTCCACTACT
1 TCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTGCAATCTTCAACCTACTCCACTACT
* *
26619112 GCTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCTACTGTCTTGGGAAGATAAGATTCACC
66 GCTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCACC
26619177 A
131 A
* * ** *
26619178 TCTTCGATCTGCTCCACTACTGCCTAGGGTGACAAAATCTGTAATCTTCAACCTACTCCACTACT
1 TCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTGCAATCTTCAACCTACTCCACTACT
**
26619243 GCTAGGGAGATAGGACTAATGGCTTTGATCTGCTTC
66 GCTAGGGAGATAGGACTAATGGCTTAAATCTGCTTC
26619279 GCTGTTAGTA
Statistics
Matches: 216, Mismatches: 15, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
131 152 0.70
132 64 0.30
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (131 bp):
TCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTGCAATCTTCAACCTACTCCACTACT
GCTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCACC
A
Found at i:26620657 original size:9 final size:9
Alignment explanation
Indices: 26620643--26620712 Score: 74
Period size: 9 Copynumber: 7.9 Consensus size: 9
26620633 GGCCTCTCCT
26620643 TTTTTTTTC
1 TTTTTTTTC
26620652 TTTTTTTTC
1 TTTTTTTTC
*
26620661 ---TTCTTC
1 TTTTTTTTC
*
26620667 TTTCTTTTC
1 TTTTTTTTC
*
26620676 TTCTTTTTC
1 TTTTTTTTC
26620685 TTTTTTTTC
1 TTTTTTTTC
26620694 TTCTTTTTTC
1 TT-TTTTTTC
26620704 TTCTTTTTT
1 TT-TTTTTT
26620713 TGTATTTTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
6 5 0.10
9 30 0.59
10 16 0.31
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:26620699 original size:18 final size:18
Alignment explanation
Indices: 26620646--26620712 Score: 86
Period size: 15 Copynumber: 3.8 Consensus size: 18
26620636 CTCTCCTTTT
26620646 TTTTTCTTTTTTTTCTTC
1 TTTTTCTTTTTTTTCTTC
*
26620664 ---TTCTTTCTTTTCTTC
1 TTTTTCTTTTTTTTCTTC
26620679 TTTTTCTTTTTTTTCTTC
1 TTTTTCTTTTTTTTCTTC
26620697 TTTTTTCTTCTTTTTT
1 -TTTTTCTT-TTTTTT
26620713 TGTATTTTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
15 14 0.33
18 14 0.33
19 8 0.19
20 6 0.14
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTTTCTTTTTTTTCTTC
Found at i:26620721 original size:19 final size:19
Alignment explanation
Indices: 26620643--26620712 Score: 83
Period size: 18 Copynumber: 3.8 Consensus size: 19
26620633 GGCCTCTCCT
*
26620643 TTTTTTTTCTTTTTT-TTC
1 TTTTTCTTCTTTTTTCTTC
* *
26620661 TTCTTCTT-TCTTTTCTTC
1 TTTTTCTTCTTTTTTCTTC
26620679 TTTTTCTT-TTTTTTCTTC
1 TTTTTCTTCTTTTTTCTTC
26620697 TTTTTTCTTCTTTTTT
1 -TTTTTCTTCTTTTTT
26620713 TGTATTTTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
17 5 0.11
18 25 0.57
19 8 0.18
20 6 0.14
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (19 bp):
TTTTTCTTCTTTTTTCTTC
Found at i:26620722 original size:33 final size:31
Alignment explanation
Indices: 26620644--26620722 Score: 90
Period size: 33 Copynumber: 2.5 Consensus size: 31
26620634 GCCTCTCCTT
26620644 TTTTTTTCTTTTTTTTCTTCTTCTTTCTTTTC
1 TTTTTTT-TTTTTTTTCTTCTTCTTTCTTTTC
*
26620676 TTCTTTTTCTTTTTTTTCTTCTT-TTT-TCTTC
1 TT-TTTTT-TTTTTTTTCTTCTTCTTTCTTTTC
*
26620707 TTTTTTTGTATTTTTT
1 TTTTTTT-TTTTTTTT
26620723 ATTGAATCTG
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
30 12 0.28
31 6 0.14
32 5 0.12
33 20 0.47
ACGTcount: A:0.01, C:0.15, G:0.01, T:0.82
Consensus pattern (31 bp):
TTTTTTTTTTTTTTTCTTCTTCTTTCTTTTC
Found at i:26623588 original size:19 final size:20
Alignment explanation
Indices: 26623559--26623610 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
26623549 CACTTTGTGA
* *
26623559 AAATCTAATGCATATG-ATG
1 AAATGTAATGCAAATGCATG
*
26623578 CAATGTAATGCAAATGCATG
1 AAATGTAATGCAAATGCATG
26623598 AAATG-AATGCAAA
1 AAATGTAATGCAAA
26623611 AAGATACGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 21 0.75
20 7 0.25
ACGTcount: A:0.46, C:0.12, G:0.17, T:0.25
Consensus pattern (20 bp):
AAATGTAATGCAAATGCATG
Found at i:26625804 original size:3 final size:3
Alignment explanation
Indices: 26625743--26625795 Score: 52
Period size: 3 Copynumber: 17.7 Consensus size: 3
26625733 AAACATAAAC
** * * * *
26625743 AAT AAT AAT AGC AAA AAT AGT ATT AAT GAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
26625791 AAT AA
1 AAT AA
26625796 GGTAATAATT
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.62, C:0.02, G:0.06, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:26629245 original size:434 final size:433
Alignment explanation
Indices: 26628238--26629975 Score: 2157
Period size: 434 Copynumber: 4.0 Consensus size: 433
26628228 CTTGGCTAAA
26628238 TGGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTT
1 TGGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTT
* * * * * *
26628303 GGAA-GTAAAGGTAATAAGTGAAAAGGAGAAAAGACTTAAAAAGAAATTGAACCAAAAGTAAGGA
66 -GAACATAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAGGAAATTGAACCAAAAATAAGGA
* * * *
26628367 AATGGTAAAAAAATGACAATAAGCTTGAATAGCTATTGATGCGTGAAAGAGAAAAGAATTGTTTT
130 AATGG-AAAAAAATGACAGTAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGCTTT
** * * * * * *
26628432 TAATTCTATTCCAGTGTGTGTTTTT-GAAGCCTCCATTACAAGGTATTAATAGACTTTTCATATG
194 TAATTCTATTTTAATGTGT-TTTTTCCAAGCCACCATTACAAGGTATTTATACACTTTTCATATA
* * * * *
26628496 CCATATTGAGCATGATTCCTCCTAAGATTATGCCTAATAATCAACTAAAATCAGATTTTTTTTTC
258 CCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCAGA-TTTGTTTTC
* * * * *
26628561 TATTCATAGAGTTTGACAAATTCACAATCTGATTTTTAATCAACCACTAATTATGA-AAATTTTT
322 TATTCATAGAGTTTGACAAATTCACAATCTAATTTTTAATCAGCCACTAATTCT-ACAACTTTTC
* ** * *
26628625 AACTTGGTCCCTTCTATTGCTT-TCCGTTCCAATTTAGCCCAAATTTGCT
386 AATTTGACCCCTTTTATTGCTTCT-CGTTCCAATTTAG-CCTAATTTGCT
** * * * **
26628674 TGGCTAAATACGATTTAGTTGAACATGAAATTAATCATACTCGATTGGGATTTAAAAGTAAATTT
1 TGGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTT
** * * **
26628739 GAATGTAATGGTGATAGGTGAAAAGGAGAGAGGACTTCGAA-GAAATTGAACCAAAAATAAGGAA
66 GAACATAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAGGAAATTGAACCAAAAATAAGGAA
*
26628803 ATGGAAAAAAATGGCAGTAAACTTGAATAGCTA-TAGATGCGTGAAAGAGAAAAGAATTGCTTTT
131 ATGGAAAAAAATGACAGTAAACTTGAATAGCTACT-GATGCGTGAAAGAGAAAAGAATTGCTTTT
* * * * *
26628867 AATTCTATTTTAATGTGTTTTTTCTAGGCCACCATTACAAGTTATTCATACACTTTTCATATGCC
195 AATTCTATTTTAATGTGTTTTTTCCAAGCCACCATTACAAGGTATTTATACACTTTTCATATACC
* *
26628932 AAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCATATTTGTTTGCTAT
260 AAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCAGATTTGTTTTCTAT
* ** * *
26628997 TTATAGAGTTTGACAAATTCTTAATCTAATTTTTAATCAGCCCCTATTTCTACAACTTTTCAATT
325 TCATAGAGTTTGACAAATTCACAATCTAATTTTTAATCAGCCACTAATTCTACAACTTTTCAATT
* *
26629062 TGACCCCTTTTATTTCTTC-CTGTTCCAATTTAGCCTAATTTGTT
390 TGACCCCTTTTATTGCTTCTC-GTTCCAATTTAGCCTAATTTGCT
* * *
26629106 TGGCTAAATGTGGTTTAGTTGAGCATGAAATTAATCATACTTGATTTGGGTTTAAAAGTGGATTT
1 TGGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTT
* * * * *
26629171 AAACATAATGGTGATATGTGAAAAGGAGAAATGACTTAAAAGGCAATCGAACCAAAAATAAGGAA
66 GAACATAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAGGAAATTGAACCAAAAATAAGGAA
* * * * * *
26629236 CTGGGAAAAATATGACAGTAAACTTGAATATCTACTGATGTGTGAAAGAGAAAAAAAATGCTTTT
131 AT-GGAAAAAAATGACAGTAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGCTTTT
* * *
26629301 AATTCTATTTCT-ATGTATTTTTTCCAAGTCAACATTACAAGGTATTTATATCA-TTTTCATATA
195 AATTCTATTT-TAATGTGTTTTTTCCAAGCCACCATTACAAGGTATTTATA-CACTTTTCATATA
* * *
26629364 CCAAATTTAGCATGATTCCTCCTAAGATTATTCCTAACTACCAACTAAAATCACATTTGTTTTCT
258 CCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCAGATTTGTTTTCT
* * * **
26629429 ATTCATAGAGTTTGACAAATTCAAAATCTAATTTTCAATCAGCCCCTAATTCTGTAACTTTTCAA
323 ATTCATAGAGTTTGACAAATTCACAATCTAATTTTTAATCAGCCACTAATTCTACAACTTTTCAA
* *
26629494 TTTGGCCCCTTTTATTGCTTCTCATTCCAA-TTAGCCTAATTTGCT
388 TTTGACCCCTTTTATTGCTTCTCGTTCCAATTTAGCCTAATTTGCT
* * *
26629539 TGGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTCAAATGGGGTTTAATAGTGGATTT
1 TGGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTT
* *
26629604 GAACATAATGATGATAAGTGAAAAGGAGAAAGGACTTGAAA-GACAATTGAACCAAAAATAAGGA
66 GAACATAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAGGA-AATTGAACCAAAAATAAGGA
* * * * * * *
26629668 ACTAGAAAAAAGTCGACAGTAAACTTGAATAACTACTGATGCATGATAGAGAAAAGAATTGTTTT
130 AATGGAAAAAAAT-GACAGTAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGCTTT
* *
26629733 TAATTCTATTTTAATATGTTTTTTTCCAAGCCACCATTGCAAGGTATTTATACACTTTTCATATA
194 TAATTCTATTTTAATGTG-TTTTTTCCAAGCCACCATTACAAGGTATTTATACACTTTTCATATA
** * * * ** ** *
26629798 TAAAATTTAGCATGATTCTTCATAAGATGATGCCTAATGATTAACTAAAATCAGATTTTTTTTCT
258 CCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCAGATTTGTTTTCT
* * * * * *
26629863 ATTCATAGAGTTTGATAAGTTCACAATTTGATTTTTAATCAGCCACTAATACTGCAACTTTTCAA
323 ATTCATAGAGTTTGACAAATTCACAATCTAATTTTTAATCAGCCACTAATTCTACAACTTTTCAA
* * * * *
26629928 TTTGACCCATTTTATTGCTTCTCGTTCCAGTTTTGCCCAATTTTCT
388 TTTGACCCCTTTTATTGCTTCTCGTTCCAATTTAGCCTAATTTGCT
26629974 TG
1 TG
26629976 TTTATTTGAA
Statistics
Matches: 1127, Mismatches: 157, Indels: 37
0.85 0.12 0.03
Matches are distributed among these distances:
432 109 0.10
433 307 0.27
434 575 0.51
435 48 0.04
436 88 0.08
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (433 bp):
TGGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTT
GAACATAATGGTGATAAGTGAAAAGGAGAAAGGACTTAAAAGGAAATTGAACCAAAAATAAGGAA
ATGGAAAAAAATGACAGTAAACTTGAATAGCTACTGATGCGTGAAAGAGAAAAGAATTGCTTTTA
ATTCTATTTTAATGTGTTTTTTCCAAGCCACCATTACAAGGTATTTATACACTTTTCATATACCA
AATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAACTAAAATCAGATTTGTTTTCTATT
CATAGAGTTTGACAAATTCACAATCTAATTTTTAATCAGCCACTAATTCTACAACTTTTCAATTT
GACCCCTTTTATTGCTTCTCGTTCCAATTTAGCCTAATTTGCT
Found at i:26635269 original size:32 final size:31
Alignment explanation
Indices: 26635209--26635270 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
26635199 TTTTCGTACA
*
26635209 TAATAAAAAAAAAGTGAGTCATTGTTATAAT
1 TAATAAAAAAAAAGTAAGTCATTGTTATAAT
* * *
26635240 TAATAAAAAAAAATTCAAGTTATTTTTATAA
1 TAATAAAAAAAAAGT-AAGTCATTGTTATAA
26635271 AAAAGCCAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
31 14 0.54
32 12 0.46
ACGTcount: A:0.53, C:0.03, G:0.08, T:0.35
Consensus pattern (31 bp):
TAATAAAAAAAAAGTAAGTCATTGTTATAAT
Found at i:26660118 original size:7 final size:7
Alignment explanation
Indices: 26660097--26660157 Score: 52
Period size: 7 Copynumber: 8.4 Consensus size: 7
26660087 AAAAATATTT
26660097 TTTAATA
1 TTTAATA
26660104 TTTAAATA
1 TTT-AATA
26660112 TTTAATA
1 TTTAATA
*
26660119 TTATAATT
1 TT-TAATA
* *
26660127 TTTTATT
1 TTTAATA
*
26660134 TTTAAAA
1 TTTAATA
26660141 TTTTAA-A
1 -TTTAATA
26660148 TTTAATA
1 TTTAATA
26660155 TTT
1 TTT
26660158 TTATTTTAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
6 5 0.11
7 22 0.49
8 18 0.40
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (7 bp):
TTTAATA
Found at i:26660138 original size:30 final size:29
Alignment explanation
Indices: 26660093--26660169 Score: 88
Period size: 30 Copynumber: 2.6 Consensus size: 29
26660083 ATTCAAAAAT
*
26660093 ATTTTTTAATATTTAAATA-TTTAATATTATA
1 ATTTTTT-ATTTTTAAATATTTTAA-ATT-TA
26660124 ATTTTTTATTTTTAAA-ATTTTAAATTTA
1 ATTTTTTATTTTTAAATATTTTAAATTTA
26660152 ATATTTTTA-TTTTAAATA
1 AT-TTTTTATTTTTAAATA
26660170 AATCTAATTG
Statistics
Matches: 42, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
28 11 0.26
29 11 0.26
30 13 0.31
31 7 0.17
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (29 bp):
ATTTTTTATTTTTAAATATTTTAAATTTA
Found at i:26660165 original size:14 final size:14
Alignment explanation
Indices: 26660102--26660166 Score: 51
Period size: 14 Copynumber: 4.6 Consensus size: 14
26660092 TATTTTTTAA
* *
26660102 TATTTAAATATTTAA
1 TATTTTAATATTT-T
*
26660117 TATTATAAT-TTTT
1 TATTTTAATATTTT
*
26660130 TATTTTTAAAATTTT
1 TA-TTTTAATATTTT
* *
26660145 AAATTTAATATTTT
1 TATTTTAATATTTT
26660159 TATTTTAA
1 TATTTTAA
26660167 ATAAATCTAA
Statistics
Matches: 38, Mismatches: 10, Indels: 5
0.72 0.19 0.09
Matches are distributed among these distances:
13 2 0.05
14 24 0.63
15 12 0.32
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (14 bp):
TATTTTAATATTTT
Found at i:26660169 original size:15 final size:15
Alignment explanation
Indices: 26660089--26660169 Score: 53
Period size: 15 Copynumber: 5.3 Consensus size: 15
26660079 TCAAATTCAA
26660089 AAATATTTTTTAATATTT
1 AAATA-TTTTT-AT-TTT
* *
26660107 AAATA-TTTAATATT
1 AAATATTTTTATTTT
26660121 ATAAT-TTTTTATTTTT
1 A-AATATTTTTA-TTTT
* *
26660137 AAA-ATTTTAAATTT
1 AAATATTTTTATTTT
26660151 -AATATTTTTATTTT
1 AAATATTTTTATTTT
26660165 AAATA
1 AAATA
26660170 AATCTAATTG
Statistics
Matches: 49, Mismatches: 8, Indels: 15
0.68 0.11 0.21
Matches are distributed among these distances:
13 2 0.04
14 15 0.31
15 20 0.41
16 7 0.14
18 5 0.10
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
AAATATTTTTATTTT
Found at i:26661862 original size:36 final size:35
Alignment explanation
Indices: 26661799--26661870 Score: 92
Period size: 36 Copynumber: 2.0 Consensus size: 35
26661789 ATTAATTGAT
* *
26661799 TTTTTTAAAATTTAAAAAATTCAAAAAATGTATAAA
1 TTTTTTAAAAATTAAAAAATT-AAAAAAGGTATAAA
26661835 TTTTTTAAAAATT-AAAAATTATTAAAAAGGTATAAA
1 TTTTTTAAAAATTAAAAAATTA--AAAAAGGTATAAA
26661871 AATTATAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
34 1 0.03
35 7 0.22
36 24 0.75
ACGTcount: A:0.56, C:0.01, G:0.04, T:0.39
Consensus pattern (35 bp):
TTTTTTAAAAATTAAAAAATTAAAAAAGGTATAAA
Found at i:26661877 original size:9 final size:9
Alignment explanation
Indices: 26661804--26661887 Score: 50
Period size: 9 Copynumber: 9.2 Consensus size: 9
26661794 TTGATTTTTT
*
26661804 TAAAATTTA
1 TAAAAATTA
26661813 -AAAAATTCA
1 TAAAAATT-A
26661822 -AAAAATGTA
1 TAAAAAT-TA
** *
26661831 TAAATTTTT
1 TAAAAATTA
26661840 TAAAAA-T-
1 TAAAAATTA
26661847 TAAAAATTA
1 TAAAAATTA
*
26661856 TTAAAAAGGTA
1 -TAAAAA-TTA
26661867 TAAAAATTA
1 TAAAAATTA
26661876 TAAAAATATA
1 TAAAAAT-TA
26661886 TA
1 TA
26661888 TTTTATTATT
Statistics
Matches: 59, Mismatches: 8, Indels: 15
0.72 0.10 0.18
Matches are distributed among these distances:
7 6 0.10
8 8 0.14
9 22 0.37
10 21 0.36
11 2 0.03
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.35
Consensus pattern (9 bp):
TAAAAATTA
Found at i:26661885 original size:17 final size:18
Alignment explanation
Indices: 26661839--26661885 Score: 62
Period size: 17 Copynumber: 2.6 Consensus size: 18
26661829 TATAAATTTT
26661839 TTAAAAAT-TAAAAATTA
1 TTAAAAATATAAAAATTA
26661856 TTAAAAAGGTATAAAAATTA
1 TTAAAAA--TATAAAAATTA
26661876 -TAAAAATATA
1 TTAAAAATATA
26661886 TATTTTATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
17 11 0.41
19 7 0.26
20 9 0.33
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (18 bp):
TTAAAAATATAAAAATTA
Found at i:26667021 original size:32 final size:32
Alignment explanation
Indices: 26666985--26667050 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
26666975 ACATGGGAAG
26666985 ACTTAATTTTTTCTTAGGTGTTGAAGTTCAAC
1 ACTTAATTTTTTCTTAGGTGTTGAAGTTCAAC
26667017 ACTTAATTTTTTCTTAGGTGTTGAAGTTCAAC
1 ACTTAATTTTTTCTTAGGTGTTGAAGTTCAAC
26667049 AC
1 AC
26667051 ACACTTCAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.26, C:0.14, G:0.15, T:0.45
Consensus pattern (32 bp):
ACTTAATTTTTTCTTAGGTGTTGAAGTTCAAC
Found at i:26675114 original size:798 final size:798
Alignment explanation
Indices: 26673578--26675174 Score: 2915
Period size: 798 Copynumber: 2.0 Consensus size: 798
26673568 AAAACTAAAA
*
26673578 AGAGAAACAAATATGCCATCCACCATGATTCTAAAGTAAATGGTGCTTTAGTTGTTGAATCTGGG
1 AGAGAAACAAATATGCCATCCACCATGATTCTAAAGAAAATGGTGCTTTAGTTGTTGAATCTGGG
*
26673643 AAAGATGCATTGGATTCGGGCCGTGTACTTGAGGAAAATTTGATTCATAATGGACCAAGTTTGGC
66 AAAGATGCATTGGATTCAGGCCGTGTACTTGAGGAAAATTTGATTCATAATGGACCAAGTTTGGC
26673708 TTTGAATGACGCAAATCTGGGAAACCAAATTCATGTGGATGAAACCTCTCGGAGTTTGTCTTCTG
131 TTTGAATGACGCAAATCTGGGAAACCAAATTCATGTGGATGAAACCTCTCGGAGTTTGTCTTCTG
* * * *
26673773 ACAGAAATAAGAGGTCAACTGCTAGGAAAAGGATGGCTGTTGGGGGAATAAACGTTCCAGGAGAA
196 ACAGAAATAAAAGGTCAACTGCTAGGAAAAAGATGGCTGATGGGGGAATAAACCTTCCAGGAGAA
* *
26673838 CATTCTGAATTGGAAACTAATAAACATAAAGATGTTGCTCACAAGGACCAGGAACATGAGTCAAA
261 CATTCTGAATTGGAAACTAATAAACATAAAAATGTTGCTCACAAGAACCAGGAACATGAGTCAAA
*
26673903 AGAAGATTCCTTTCAATCTCAGCCTGCATCGAAGAAAAAGCGCAAAGCCGAGAAGAAAGATGTTA
326 AGAAGATTCCTTTCAATCTCAGCCTGCATCAAAGAAAAAGCGCAAAGCCGAGAAGAAAGATGTTA
*
26673968 ATGACAATTCTTTAATAGAAAATGGAGAACAAGTTACTGATCTCAATACTGCAACCTCTGAGTGC
391 ATGACAATTCTTTAATAGAAAATGGAGAACAAGCTACTGATCTCAATACTGCAACCTCTGAGTGC
* *
26674033 ACTTTAGGTCAGAAACTGGAAAATACGAGCGCTGTCGTAGACCCCTTGAATACTGAATCTGTAAA
456 ACTTTAGGTCAGAAACTGGAAAATACGAGCGCTGTCGTAGACCCCTTGAATACTAAATCGGTAAA
* *
26674098 ACAAAACCATTTGTCGACGGCCAATGCAAGCGGTGGGAAGAAGAACAGGAAAAGGCAAAAATCAA
521 ACAAAACCATTTGTCGACCGCCAATGCAAGCGGTGAGAAGAAGAACAGGAAAAGGCAAAAATCAA
*
26674163 ATCCTAGTCAAGTAGGTAGTGAAGTCTCTTCTGCAAAAGATGTTCATGTGGAAACTTTTCAGGCT
586 ATCCTAGTCAAGTAGGTAGTGAAGTCTCTGCTGCAAAAGATGTTCATGTGGAAACTTTTCAGGCT
26674228 GTAGAAGCCATTAAAGACAAAGATTTGGGCAGTAAAGGTGATCCAGTTTCTTTTCTTGGAAAACG
651 GTAGAAGCCATTAAAGACAAAGATTTGGGCAGTAAAGGTGATCCAGTTTCTTTTCTTGGAAAACG
*
26674293 TTCTGCAGGTGGAGAAATATCTGAACCTGGTCTGATCTCTTCAATGAAAATGCAGGAAGTTAGTG
716 TTCTGCAGGTGGAGAAATATCTGAACCTGGTCTGATCTCATCAATGAAAATGCAGGAAGTTAGTG
26674358 AAACAAATCAAGTGCCCC
781 AAACAAATCAAGTGCCCC
*
26674376 AGAGAAACAAATATGCCATCCACTATGATTCTAAAGAAAATGGTGCTTTAGTTGTTGAATCTGGG
1 AGAGAAACAAATATGCCATCCACCATGATTCTAAAGAAAATGGTGCTTTAGTTGTTGAATCTGGG
* *
26674441 AAAGATGCGTTGGATTCAGGCTGTGTACTTGAGGAAAATTTGATTCATAATGGACCAAGTTTGGC
66 AAAGATGCATTGGATTCAGGCCGTGTACTTGAGGAAAATTTGATTCATAATGGACCAAGTTTGGC
* *
26674506 TTTGAATGATGCAAATCTGGGAAGCCAAATTCATGTGGATGAAACCTCTCGGAGTTTGTCTTCTG
131 TTTGAATGACGCAAATCTGGGAAACCAAATTCATGTGGATGAAACCTCTCGGAGTTTGTCTTCTG
26674571 ACAGAAATAAAAGGTCAACTGCTAGGAAAAAGATGGCTGATGGGGGAATAAACCTTCCAGGAGAA
196 ACAGAAATAAAAGGTCAACTGCTAGGAAAAAGATGGCTGATGGGGGAATAAACCTTCCAGGAGAA
*
26674636 CATTCTGAATTGGAAACTAATAAACATAAAAATGTTGCTCACAAGAACCGGGAACATGAGTCAAA
261 CATTCTGAATTGGAAACTAATAAACATAAAAATGTTGCTCACAAGAACCAGGAACATGAGTCAAA
* *
26674701 AGAAGATTCCTTTCAATCTCGGCCTGTATCAAAGAAAAAGCGCAAAGCCGAGAAGAAAGATGTTA
326 AGAAGATTCCTTTCAATCTCAGCCTGCATCAAAGAAAAAGCGCAAAGCCGAGAAGAAAGATGTTA
* *
26674766 ATGACAATTCTTTAATAGAAAATGGAGAACACGCTACTGATCTCAATACTGCAACCTCTGAGTGT
391 ATGACAATTCTTTAATAGAAAATGGAGAACAAGCTACTGATCTCAATACTGCAACCTCTGAGTGC
* * *
26674831 ACTTTAGGTCAGAAATTGGAAAATACGAGGGCTGTCGTAGACCCCTTGAATGCTAAATCGGTAAA
456 ACTTTAGGTCAGAAACTGGAAAATACGAGCGCTGTCGTAGACCCCTTGAATACTAAATCGGTAAA
26674896 ACAAAACCATTTGTCGACCGCCAATGCAAGCGGTGAGAAGAAGAACAGGAAAAGGCAAAAATCAA
521 ACAAAACCATTTGTCGACCGCCAATGCAAGCGGTGAGAAGAAGAACAGGAAAAGGCAAAAATCAA
26674961 ATCCTAGTCAAGTAGGTAGTGAAGTCTCTGCTGCAAAAGATGTTCATGTGGAAACTTTTCAGGCT
586 ATCCTAGTCAAGTAGGTAGTGAAGTCTCTGCTGCAAAAGATGTTCATGTGGAAACTTTTCAGGCT
*
26675026 GTAGAAGCCATTGAAGACAAAGATTTGGGCAGTAAAGGTGATCCAGTTTCTTTTCTTGGAAAACG
651 GTAGAAGCCATTAAAGACAAAGATTTGGGCAGTAAAGGTGATCCAGTTTCTTTTCTTGGAAAACG
26675091 TTCTGCAGGTGGAGAAATATCTGAACCTGGTCTGATCTCATCAATGAAAATGCAGGAAGTTAGTG
716 TTCTGCAGGTGGAGAAATATCTGAACCTGGTCTGATCTCATCAATGAAAATGCAGGAAGTTAGTG
*
26675156 AAACCAATCAAGTGCCCC
781 AAACAAATCAAGTGCCCC
26675174 A
1 A
26675175 CTCGGGGGGT
Statistics
Matches: 768, Mismatches: 31, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
798 768 1.00
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (798 bp):
AGAGAAACAAATATGCCATCCACCATGATTCTAAAGAAAATGGTGCTTTAGTTGTTGAATCTGGG
AAAGATGCATTGGATTCAGGCCGTGTACTTGAGGAAAATTTGATTCATAATGGACCAAGTTTGGC
TTTGAATGACGCAAATCTGGGAAACCAAATTCATGTGGATGAAACCTCTCGGAGTTTGTCTTCTG
ACAGAAATAAAAGGTCAACTGCTAGGAAAAAGATGGCTGATGGGGGAATAAACCTTCCAGGAGAA
CATTCTGAATTGGAAACTAATAAACATAAAAATGTTGCTCACAAGAACCAGGAACATGAGTCAAA
AGAAGATTCCTTTCAATCTCAGCCTGCATCAAAGAAAAAGCGCAAAGCCGAGAAGAAAGATGTTA
ATGACAATTCTTTAATAGAAAATGGAGAACAAGCTACTGATCTCAATACTGCAACCTCTGAGTGC
ACTTTAGGTCAGAAACTGGAAAATACGAGCGCTGTCGTAGACCCCTTGAATACTAAATCGGTAAA
ACAAAACCATTTGTCGACCGCCAATGCAAGCGGTGAGAAGAAGAACAGGAAAAGGCAAAAATCAA
ATCCTAGTCAAGTAGGTAGTGAAGTCTCTGCTGCAAAAGATGTTCATGTGGAAACTTTTCAGGCT
GTAGAAGCCATTAAAGACAAAGATTTGGGCAGTAAAGGTGATCCAGTTTCTTTTCTTGGAAAACG
TTCTGCAGGTGGAGAAATATCTGAACCTGGTCTGATCTCATCAATGAAAATGCAGGAAGTTAGTG
AAACAAATCAAGTGCCCC
Found at i:26679730 original size:24 final size:24
Alignment explanation
Indices: 26679699--26679744 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
26679689 CCCTTGTATA
26679699 AAATAATCTTAAAGTCTATACATT
1 AAATAATCTTAAAGTCTATACATT
26679723 AAATAATCTTAAAGTCTATACA
1 AAATAATCTTAAAGTCTATACA
26679745 AACAATTCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.48, C:0.13, G:0.04, T:0.35
Consensus pattern (24 bp):
AAATAATCTTAAAGTCTATACATT
Found at i:26711618 original size:29 final size:29
Alignment explanation
Indices: 26711557--26711618 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
26711547 AAAATTATAT
** * *
26711557 TTAATAAAATAAAATATTTATTTGTTTTT
1 TTAATAAAATAAAATATTTATTTAATGTG
* *
26711586 TTAATATAATAAAATATTTTTTTAATGTG
1 TTAATAAAATAAAATATTTATTTAATGTG
26711615 TTAA
1 TTAA
26711619 AATTTTTTTA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (29 bp):
TTAATAAAATAAAATATTTATTTAATGTG
Found at i:26711619 original size:21 final size:20
Alignment explanation
Indices: 26711581--26711627 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
26711571 TATTTATTTG
26711581 TTTTTTTAATATAATAAAAT
1 TTTTTTTAATATAATAAAAT
* **
26711601 ATTTTTTTAATGTGTTAAAAT
1 -TTTTTTTAATATAATAAAAT
26711622 TTTTTT
1 TTTTTT
26711628 ATGTTAATCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 6 0.26
21 17 0.74
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (20 bp):
TTTTTTTAATATAATAAAAT
Found at i:26713213 original size:18 final size:17
Alignment explanation
Indices: 26713192--26713226 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26713182 TTATTATTAA
*
26713192 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
26713210 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
26713227 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:26713333 original size:18 final size:17
Alignment explanation
Indices: 26713310--26713346 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
26713300 AATTATTATT
26713310 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
26713326 AAATATATGATTTAATA
1 AAATATATGATTTAATA
26713343 AAAT
1 AAAT
26713347 TCTTAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:26713385 original size:120 final size:120
Alignment explanation
Indices: 26713172--26713737 Score: 1078
Period size: 120 Copynumber: 4.7 Consensus size: 120
26713162 TTAATCATAT
* *
26713172 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTTAAGATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
26713237 CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
66 CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
26713292 TTTAAGATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
1 TTTAAGATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
26713357 CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
66 CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
26713412 TTTAAGATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
1 TTTAAGATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
26713477 CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
66 CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
26713532 TTTAAGATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
1 TTTAAGATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
26713597 CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
66 CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
* *
26713652 TTTAAGATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAATTTCTTGATAAT
1 TTTAAGATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
* *
26713717 AAATTTTCTTATATGAATTTA
66 CAATATTCTTATATGAATTTA
26713738 TACAATTTAA
Statistics
Matches: 440, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 440 1.00
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.44
Consensus pattern (120 bp):
TTTAAGATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
Found at i:26713453 original size:18 final size:17
Alignment explanation
Indices: 26713430--26713466 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
26713420 AATTATTATT
26713430 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
26713446 AAATATATGATTTAATA
1 AAATATATGATTTAATA
26713463 AAAT
1 AAAT
26713467 TCTTAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:26713573 original size:18 final size:17
Alignment explanation
Indices: 26713550--26713586 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
26713540 AATTATTATT
26713550 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
26713566 AAATATATGATTTAATA
1 AAATATATGATTTAATA
26713583 AAAT
1 AAAT
26713587 TCTTAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:26713767 original size:91 final size:92
Alignment explanation
Indices: 26713650--26713829 Score: 256
Period size: 91 Copynumber: 2.0 Consensus size: 92
26713640 TATAAAATAT
* * * * * *
26713650 AATTTAAGATAATTATTATTAAATATATTTTAATTAA-AATATATGATTTAATAAATTTCTTGAT
1 AATTTAAAATAATTAATATTAAATATAATTTAA-TAATAATATATAATTTAATAAAATTCTTAAT
*
26713714 AAT-AAATTTTCTTATATGAATTTATAC
65 AATAAAATCTTCTTATATGAATTTATAC
* *
26713741 AATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATA
1 AATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTAATAAAATTCTTAATA
26713806 ATAAAATCTTCTTATATGAATTTA
66 ATAAAATCTTCTTATATGAATTTA
26713830 CTAAAATCAA
Statistics
Matches: 78, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
90 3 0.04
91 55 0.71
92 20 0.26
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (92 bp):
AATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTAATAAAATTCTTAATA
ATAAAATCTTCTTATATGAATTTATAC
Found at i:26719924 original size:22 final size:22
Alignment explanation
Indices: 26719872--26719935 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 22
26719862 TATTTGGGAA
* * *
26719872 TTGGTATGAAACGGTAAGGGAT
1 TTGGTACGAAATGGTAATGGAT
**
26719894 TTGAAACGAAATGGTAATGGAT
1 TTGGTACGAAATGGTAATGGAT
*
26719916 TTGGTACGAAAATGGAAATG
1 TTGGTACG-AAATGGTAATG
26719936 TTTCAAAAAG
Statistics
Matches: 33, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
22 23 0.70
23 10 0.30
ACGTcount: A:0.38, C:0.05, G:0.31, T:0.27
Consensus pattern (22 bp):
TTGGTACGAAATGGTAATGGAT
Found at i:26723297 original size:16 final size:16
Alignment explanation
Indices: 26723276--26723306 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
26723266 TTAAAAATAA
26723276 AAATAATAATTTATAG
1 AAATAATAATTTATAG
26723292 AAATAATAATTTATA
1 AAATAATAATTTATA
26723307 AAAGGGGGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (16 bp):
AAATAATAATTTATAG
Found at i:26723496 original size:10 final size:10
Alignment explanation
Indices: 26723465--26723541 Score: 70
Period size: 10 Copynumber: 8.0 Consensus size: 10
26723455 TAAATGACTT
26723465 TTTTTTATAA
1 TTTTTTATAA
*
26723475 TTTTTAAT-A
1 TTTTTTATAA
*
26723484 TTTTTTCTAA
1 TTTTTTATAA
* *
26723494 TTTATTAGAA
1 TTTTTTATAA
*
26723504 TTTATTAT-A
1 TTTTTTATAA
*
26723513 TTATTTATAA
1 TTTTTTATAA
*
26723523 -TTTTTATGA
1 TTTTTTATAA
26723532 TTTTTTATAA
1 TTTTTTATAA
26723542 NNNNNNNNNN
Statistics
Matches: 52, Mismatches: 12, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
9 21 0.40
10 31 0.60
ACGTcount: A:0.31, C:0.01, G:0.03, T:0.65
Consensus pattern (10 bp):
TTTTTTATAA
Found at i:26723538 original size:19 final size:19
Alignment explanation
Indices: 26723466--26723541 Score: 73
Period size: 19 Copynumber: 4.0 Consensus size: 19
26723456 AAATGACTTT
* *
26723466 TTTTTATAATTTTTAATAT
1 TTTTTATAATTTTTTATAA
* * *
26723485 TTTTTCTAATTTATTAGAA
1 TTTTTATAATTTTTTATAA
*
26723504 TTTATTAT-ATTATTTATAA
1 TTT-TTATAATTTTTTATAA
*
26723523 TTTTTATGATTTTTTATAA
1 TTTTTATAATTTTTTATAA
26723542 NNNNNNNNNN
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
18 4 0.09
19 38 0.84
20 3 0.07
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.64
Consensus pattern (19 bp):
TTTTTATAATTTTTTATAA
Found at i:26723717 original size:20 final size:19
Alignment explanation
Indices: 26723672--26723727 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
26723662 AAATTTTAAT
*
26723672 TTTTTTAAAAAATATTTTTA
1 TTTTTTAATAAAT-TTTTTA
**
26723692 AGTTTTAATAAATTTTCTTA
1 TTTTTTAATAAATTTT-TTA
*
26723712 TTTTTTAATCAATTTT
1 TTTTTTAATAAATTTT
26723728 ATGAGAAAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
19 3 0.10
20 26 0.90
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.61
Consensus pattern (19 bp):
TTTTTTAATAAATTTTTTA
Found at i:26726091 original size:2 final size:2
Alignment explanation
Indices: 26726084--26726110 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
26726074 ACATGTCTAT
26726084 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
26726111 TAAGGAATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26726627 original size:24 final size:24
Alignment explanation
Indices: 26726600--26726648 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
26726590 CGAAAATTAC
26726600 TAGTTTCAGGATTTTAATTCGAGT
1 TAGTTTCAGGATTTTAATTCGAGT
*
26726624 TAGTTTCATGATTTTAATTCGAGT
1 TAGTTTCAGGATTTTAATTCGAGT
26726648 T
1 T
26726649 TAAATCATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.24, C:0.08, G:0.18, T:0.49
Consensus pattern (24 bp):
TAGTTTCAGGATTTTAATTCGAGT
Found at i:26726656 original size:24 final size:24
Alignment explanation
Indices: 26726609--26726660 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
26726599 CTAGTTTCAG
**
26726609 GATTTTAATTCGAGTTAGTTTCAT
1 GATTTTAATTCGAGTTAGAATCAT
26726633 GATTTTAATTCGAGTTTA-AATCAT
1 GATTTTAATTCGAG-TTAGAATCAT
26726657 -ATTT
1 GATTT
26726661 GGTTTGGGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 4 0.16
24 18 0.72
25 3 0.12
ACGTcount: A:0.29, C:0.08, G:0.13, T:0.50
Consensus pattern (24 bp):
GATTTTAATTCGAGTTAGAATCAT
Found at i:26726781 original size:17 final size:18
Alignment explanation
Indices: 26726755--26726788 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
26726745 TTAATAATTA
26726755 TTAAGCAGTTTAAGTTAT
1 TTAAGCAGTTTAAGTTAT
*
26726773 TTAAG-AGTTTATGTTA
1 TTAAGCAGTTTAAGTTA
26726789 GCAAGAAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.32, C:0.03, G:0.18, T:0.47
Consensus pattern (18 bp):
TTAAGCAGTTTAAGTTAT
Found at i:26728615 original size:16 final size:16
Alignment explanation
Indices: 26728581--26728619 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 16
26728571 GACATTGGTG
26728581 ATATA-TGTTATTTAT
1 ATATATTGTTATTTAT
26728596 ATATATTGTTAATTTAAT
1 ATATATTGTT-ATTT-AT
26728614 ATATAT
1 ATATAT
26728620 ATGTATGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.24
16 4 0.19
17 4 0.19
18 8 0.38
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (16 bp):
ATATATTGTTATTTAT
Found at i:26732926 original size:14 final size:14
Alignment explanation
Indices: 26732903--26732929 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26732893 ACAAAAATAA
26732903 ATAAACAAATAAAT
1 ATAAACAAATAAAT
26732917 ATAAACAAATAAA
1 ATAAACAAATAAA
26732930 CTAAACTGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.07, G:0.00, T:0.19
Consensus pattern (14 bp):
ATAAACAAATAAAT
Found at i:26736033 original size:9 final size:10
Alignment explanation
Indices: 26736010--26736038 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
26736000 CCATAATTAT
26736010 TTTTTTAAAA
1 TTTTTTAAAA
26736020 TTTTTTAAAA
1 TTTTTTAAAA
26736030 TTTTTTAAA
1 TTTTTTAAA
26736039 GTCAGAACAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (10 bp):
TTTTTTAAAA
Found at i:26736377 original size:23 final size:22
Alignment explanation
Indices: 26736334--26736377 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
26736324 TTCTAAGTCG
26736334 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
26736357 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
26736378 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:26736486 original size:45 final size:45
Alignment explanation
Indices: 26736422--26736510 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
26736412 AACATATACT
* *
26736422 CGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
*
26736467 CGGTGGAATCAGCACATAGCGACCACCTTACTAATCAATGATGT
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
26736511 TCAGTTCACA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:26736615 original size:51 final size:50
Alignment explanation
Indices: 26736520--26736648 Score: 136
Period size: 51 Copynumber: 2.5 Consensus size: 50
26736510 TTCAGTTCAC
* *
26736520 ATAGTAGCCTGCACATAGTACTACACATGTAACCATTACCATCCGATCTACG
1 ATAGTAGCCTGCACATAGTACTACACACGTAACCATAACCATCCG--CTACG
*** * *
26736572 -TAGTAGCCTGCACATAGTACTACACACGTGATTGA-AACTATCCGGTACG
1 ATAGTAGCCTGCACATAGTACTACACACGT-AACCATAACCATCCGCTACG
*
26736621 CATAGTAGTCTGCACATAGTACTACACA
1 -ATAGTAGCCTGCACATAGTACTACACA
26736649 TGCGACTTAT
Statistics
Matches: 66, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
49 4 0.06
51 60 0.91
52 2 0.03
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (50 bp):
ATAGTAGCCTGCACATAGTACTACACACGTAACCATAACCATCCGCTACG
Found at i:26736703 original size:101 final size:102
Alignment explanation
Indices: 26736519--26736703 Score: 261
Period size: 101 Copynumber: 1.8 Consensus size: 102
26736509 GTTCAGTTCA
* *
26736519 CATAGTAGCCTGCACATAGTACTACACATGTAACCATTACCATCCGATCTACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCAACCATTACCATCCGATCTACGTAGTAGCCTACA
26736584 CATAGTACTACACACGTGATTGAAACTATCCGGTACG
66 CATAGTACTACACACGTGATTGAAACTATCCGGTACG
* * * *
26736621 CATAGTAGTCTGCACATAGTACTACACATGCGA-C-TTATCATTCTGATAC-ACGTAGTA-CCTT
1 CATAGTAGCCTGCACATAGTACTACACATGCAACCATTACCA-TCCGAT-CTACGTAGTAGCC-T
26736682 ACACATAGTACTACACACGTGA
63 ACACATAGTACTACACACGTGA
26736704 CCATCACTTT
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
100 7 0.09
101 36 0.49
102 31 0.42
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (102 bp):
CATAGTAGCCTGCACATAGTACTACACATGCAACCATTACCATCCGATCTACGTAGTAGCCTACA
CATAGTACTACACACGTGATTGAAACTATCCGGTACG
Found at i:26737164 original size:13 final size:13
Alignment explanation
Indices: 26737148--26737173 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26737138 ATCAGCTAGC
26737148 AAAAGTTGTTTAA
1 AAAAGTTGTTTAA
26737161 AAAAGTTGTTTAA
1 AAAAGTTGTTTAA
26737174 CATAATTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.38
Consensus pattern (13 bp):
AAAAGTTGTTTAA
Found at i:26750761 original size:23 final size:22
Alignment explanation
Indices: 26750735--26750801 Score: 80
Period size: 22 Copynumber: 2.9 Consensus size: 22
26750725 GTTCAGATTC
26750735 AATAAAAAAAACAAAAAAATCAA
1 AATAAAAAAAA-AAAAAAATCAA
*
26750758 AATAAAAAATAAAAAAAATCAA
1 AATAAAAAAAAAAAAAAATCAA
*
26750780 AATCAAAATTAAAAATAAAAAT
1 AAT-AAAA--AAAAAAAAAAAT
26750802 ATAAAAATGA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
22 14 0.37
23 14 0.37
25 10 0.26
ACGTcount: A:0.79, C:0.06, G:0.00, T:0.15
Consensus pattern (22 bp):
AATAAAAAAAAAAAAAAATCAA
Found at i:26750772 original size:22 final size:22
Alignment explanation
Indices: 26750735--26750794 Score: 84
Period size: 22 Copynumber: 2.7 Consensus size: 22
26750725 GTTCAGATTC
*
26750735 AATAAAAAAAACAAAAAAATCAA
1 AATAAAAAATA-AAAAAAATCAA
26750758 AATAAAAAATAAAAAAAATCAA
1 AATAAAAAATAAAAAAAATCAA
* *
26750780 AATCAAAATTAAAAA
1 AATAAAAAATAAAAA
26750795 TAAAAATATA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
22 24 0.71
23 10 0.29
ACGTcount: A:0.80, C:0.07, G:0.00, T:0.13
Consensus pattern (22 bp):
AATAAAAAATAAAAAAAATCAA
Found at i:26750798 original size:6 final size:6
Alignment explanation
Indices: 26750735--26750807 Score: 55
Period size: 6 Copynumber: 12.3 Consensus size: 6
26750725 GTTCAGATTC
* * *
26750735 AATAAA AA-AAA CAA-AAA AATCAA AATAAA AA-ATA AA-AAA AATCAA
1 AATAAA AATAAA -AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
*
26750780 AATCAAA ATTAAA AATAAA AATATAA AA
1 AAT-AAA AATAAA AATAAA AATA-AA AA
26750808 ATGAAAATGA
Statistics
Matches: 54, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
5 13 0.24
6 33 0.61
7 8 0.15
ACGTcount: A:0.79, C:0.05, G:0.00, T:0.15
Consensus pattern (6 bp):
AATAAA
Found at i:26750822 original size:28 final size:27
Alignment explanation
Indices: 26750739--26750837 Score: 85
Period size: 28 Copynumber: 3.5 Consensus size: 27
26750729 AGATTCAATA
*
26750739 AAAAAAACAAAAAAATCAAAATAAAAAAT
1 AAAAAAA-ATAAAAATCAAAAT-AAAAAT
*
26750768 AAAAAAAATCAAAATCAAAATTAAAAAT
1 AAAAAAAATAAAAATCAAAA-TAAAAAT
* *
26750796 -AAAAATATAAAAATGAAAATGATAAAA-
1 AAAAAAAATAAAAATCAAAAT-A-AAAAT
*
26750823 AAAGAAAAAGAAAAA
1 AAA-AAAAATAAAAA
26750838 AAAGGAAAGG
Statistics
Matches: 58, Mismatches: 7, Indels: 10
0.77 0.09 0.13
Matches are distributed among these distances:
26 1 0.02
27 17 0.29
28 23 0.40
29 17 0.29
ACGTcount: A:0.79, C:0.04, G:0.04, T:0.13
Consensus pattern (27 bp):
AAAAAAAATAAAAATCAAAATAAAAAT
Found at i:26750837 original size:23 final size:23
Alignment explanation
Indices: 26750794--26750836 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
26750784 AAAATTAAAA
* *
26750794 ATAAAAATATAAAAATGAAAATG
1 ATAAAAAAAGAAAAATGAAAATG
26750817 ATAAAAAAAGAAAAA-GAAAA
1 ATAAAAAAAGAAAAATGAAAA
26750837 AAAAGGAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.77, C:0.00, G:0.09, T:0.14
Consensus pattern (23 bp):
ATAAAAAAAGAAAAATGAAAATG
Found at i:26750845 original size:16 final size:16
Alignment explanation
Indices: 26750790--26750841 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 16
26750780 AATCAAAATT
* *
26750790 AAAAATAAAAATAT-A
1 AAAAAGAAAAAGATAA
* *
26750805 AAAATGAAAATGATAA
1 AAAAAGAAAAAGATAA
26750821 AAAAAGAAAAAGA-AA
1 AAAAAGAAAAAGATAA
26750836 AAAAAG
1 AAAAAG
26750842 GAAAGGCCAA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
15 18 0.60
16 12 0.40
ACGTcount: A:0.79, C:0.00, G:0.10, T:0.12
Consensus pattern (16 bp):
AAAAAGAAAAAGATAA
Found at i:26752469 original size:35 final size:35
Alignment explanation
Indices: 26752423--26752490 Score: 118
Period size: 35 Copynumber: 1.9 Consensus size: 35
26752413 AAAGGTTGGA
*
26752423 AATCTAAGAAGGAAGAGTCTAAATTAAGACTATAT
1 AATCTAAGAAGGAAGAGTCAAAATTAAGACTATAT
*
26752458 AATCTAAGAAGGAAGAGTCAAAATTAAGGCTAT
1 AATCTAAGAAGGAAGAGTCAAAATTAAGACTAT
26752491 CTCTTTGGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.49, C:0.09, G:0.19, T:0.24
Consensus pattern (35 bp):
AATCTAAGAAGGAAGAGTCAAAATTAAGACTATAT
Found at i:26753644 original size:44 final size:44
Alignment explanation
Indices: 26753066--26753737 Score: 167
Period size: 44 Copynumber: 15.3 Consensus size: 44
26753056 ACCACAAATC
** * * **
26753066 CTTGCCTCATTGGGTTGCAGCGGAGCAGGTTGAAAATAATAGAT
1 CTTGCCTCCCTGGGTTGCAGTGGAGCAGGTTGAAGATAGCAGAT
* **** * * * * * *
26753110 CTTGCCTTCCTGCACCGACAGTGAAGCAGATCGAAGACACCAG-C
1 CTTGCCTCCCTGGGTTG-CAGTGGAGCAGGTTGAAGATAGCAGAT
* * *
26753154 CTTGCCTTCCTGGGTTGCAGTGGAGCAAGTTGAAAATAGCAGAT
1 CTTGCCTCCCTGGGTTGCAGTGGAGCAGGTTGAAGATAGCAGAT
* * * ***** * * * * * * *
26753198 ATTGTCTTCCTGCACCAACAGCGAAGCAGATCGAAGACACCAG-C
1 CTTGCCTCCCTG-GGTTGCAGTGGAGCAGGTTGAAGATAGCAGAT
* * *
26753242 CTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTAAAAATAGCAGAT
1 CTTGCCTCCCTGGGTTGCAGTGGAGCAGGTTGAAGATAGCAGAT
* * **** * * * * * * *
26753286 CTTGTCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCA-AC
1 CTTGCCTCCCTGGGTTG-CAGTGGAGCAGGTTGAAGATAGCAGAT
* *
26753330 CTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAAAATAGCAGAT
1 CTTGCCTCCCTGGGTTGCAGTGGAGCAGGTTGAAGATAGCAGAT
* **** * * * * * * *
26753374 CTTGCCTTCCTGCACCGACAGCGAAACAGATCGAAGACA-CTAGCT
1 CTTGCCTCCCTGGGTTG-CAGTGGAGCAGGTTGAAGATAGC-AGAT
** *
26753419 -TTGCCTCTTTGGGTTGCAGTGGAGCAGGTTGAAAATAGCAGAT
1 CTTGCCTCCCTGGGTTGCAGTGGAGCAGGTTGAAGATAGCAGAT
* ***** * * * * * * *
26753462 CTTGCCTTCCTACACCGACAGCGAAGCAGATCGAAGACACCA-AC
1 CTTGCCTCCCTGGGTTG-CAGTGGAGCAGGTTGAAGATAGCAGAT
* * * * *
26753506 CTTGTCTCCTTAGGTTACAGTGGAGCAGGTTGAAAATAGCAGAT
1 CTTGCCTCCCTGGGTTGCAGTGGAGCAGGTTGAAGATAGCAGAT
* * * **** * * * * * *
26753550 CTAGCCTTCTTGCACCGACAGCGAAGCAGATCGAAGACA-CTAG-C
1 CTTGCCTCCCTGGGTTG-CAGTGGAGCAGGTTGAAGATAGC-AGAT
*
26753594 CTTGCCTCCCTGGGTTGCAGTGGAGTAGGTTGAAGATAGCAGAT
1 CTTGCCTCCCTGGGTTGCAGTGGAGCAGGTTGAAGATAGCAGAT
* * * * * * *
26753638 CTTGCCTTCCTGTGTTGGCAGTGAAGCAGATCGAAGACA-CTAG-C
1 CTTGCCTCCCTGGGTT-GCAGTGGAGCAGGTTGAAGATAGC-AGAT
* ** *
26753682 CTTGCCTCCCTAGGTTGCAGCAGAGCAGGTTGAAGATGGCAGAT
1 CTTGCCTCCCTGGGTTGCAGTGGAGCAGGTTGAAGATAGCAGAT
* *
26753726 ATTGCCTTCCTG
1 CTTGCCTCCCTG
26753738 TATTGGGAGC
Statistics
Matches: 402, Mismatches: 206, Indels: 40
0.62 0.32 0.06
Matches are distributed among these distances:
43 118 0.29
44 166 0.41
45 118 0.29
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (44 bp):
CTTGCCTCCCTGGGTTGCAGTGGAGCAGGTTGAAGATAGCAGAT
Found at i:26753674 original size:45 final size:43
Alignment explanation
Indices: 26753572--26753781 Score: 140
Period size: 44 Copynumber: 4.8 Consensus size: 43
26753562 CACCGACAGC
*
26753572 GAAGCAGATCGAAGACACTAGCCTTGCCTCCCTGGGTTGCAGT
1 GAAGCAGATCGAAGACACTAGCCTTGCCTCCCTGTGTTGCAGT
* * * * * * *
26753615 GGAGTAGGTTGAAGATAGC-AGATCTTGCCTTCCTGTGTTGGCAGT
1 GAAGCAGATCGAAGACA-CTAG-CCTTGCCTCCCTGTGTT-GCAGT
26753660 GAAGCAGATCGAAGACACTAGCCTTGCCTCCCTAG-GTTGCAG-
1 GAAGCAGATCGAAGACACTAGCCTTGCCTCCCT-GTGTTGCAGT
* * * ** ** * * * *
26753702 CAGAGCAGGTTGAAGATGGC-AGATATTGCCTTCCTGTATTGGGAGC
1 GA-AGCAGATCGAAGA-CACTAG-CCTTGCCTCCCTGTGTT-GCAGT
*
26753748 GAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
1 GAAGCAGATCGAAGACACTAGCCTTGCCTCCCTG
26753782 GGTTACAGCG
Statistics
Matches: 122, Mismatches: 33, Indels: 23
0.69 0.19 0.13
Matches are distributed among these distances:
42 1 0.01
43 32 0.26
44 52 0.43
45 36 0.30
46 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.23
Consensus pattern (43 bp):
GAAGCAGATCGAAGACACTAGCCTTGCCTCCCTGTGTTGCAGT
Found at i:26753828 original size:88 final size:88
Alignment explanation
Indices: 26753065--26753822 Score: 1012
Period size: 88 Copynumber: 8.6 Consensus size: 88
26753055 AACCACAAAT
** * **
26753065 CCTTGCCTCATTGGGTTGCAGCGGAGCAGGTTGAAAATAATAGATCTTGCCTTCCTGCACCGACA
1 CCTTGCCTCCCTGGGTTGCAGTGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTGCACCGACA
*
26753130 GTGAAGCAGATCGAAGACACCAG
66 GCGAAGCAGATCGAAGACACCAG
* * * * *
26753153 CCTTGCCTTCCTGGGTTGCAGTGGAGCAAGTTGAAAATAGCAGATATTGTCTTCCTGCACCAACA
1 CCTTGCCTCCCTGGGTTGCAGTGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTGCACCGACA
26753218 GCGAAGCAGATCGAAGACACCAG
66 GCGAAGCAGATCGAAGACACCAG
* * *
26753241 CCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTAAAAATAGCAGATCTTGTCTTCCTGCACCGACA
1 CCTTGCCTCCCTGGGTTGCAGTGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTGCACCGACA
*
26753306 GCGAAGCAGATCGAAGACACCAA
66 GCGAAGCAGATCGAAGACACCAG
*
26753329 CCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTGCACCGACA
1 CCTTGCCTCCCTGGGTTGCAGTGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTGCACCGACA
* *
26753394 GCGAAACAGATCGAAGACACTAG
66 GCGAAGCAGATCGAAGACACCAG
* ** *
26753417 CTTTGCCTCTTTGGGTTGCAGTGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTACACCGACA
1 CCTTGCCTCCCTGGGTTGCAGTGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTGCACCGACA
*
26753482 GCGAAGCAGATCGAAGACACCAA
66 GCGAAGCAGATCGAAGACACCAG
* * * * * *
26753505 CCTTGTCTCCTTAGGTTACAGTGGAGCAGGTTGAAAATAGCAGATCTAGCCTTCTTGCACCGACA
1 CCTTGCCTCCCTGGGTTGCAGTGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTGCACCGACA
*
26753570 GCGAAGCAGATCGAAGACACTAG
66 GCGAAGCAGATCGAAGACACCAG
* * **** *
26753593 CCTTGCCTCCCTGGGTTGCAGTGGAGTAGGTTGAAGATAGCAGATCTTGCCTTCCTGTGTTGGCA
1 CCTTGCCTCCCTGGGTTGCAGTGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTGCACCGACA
* *
26753658 GTGAAGCAGATCGAAGACACTAG
66 GCGAAGCAGATCGAAGACACCAG
* ** * * * * ** **
26753681 CCTTGCCTCCCTAGGTTGCAGCAGAGCAGGTTGAAGATGGCAGATATTGCCTTCCTGTATTGGGA
1 CCTTGCCTCCCTGGGTTGCAGTGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTGCACCGACA
26753746 GCGAAGCAGATCGAAGACACCAG
66 GCGAAGCAGATCGAAGACACCAG
* * * ** *
26753769 CCTTGCCTCCCTGGGTTACAGCGGAGTAGGTTGAAAGCACCAGATCTTGCCTTC
1 CCTTGCCTCCCTGGGTTGCAGTGGAGCAGGTTGAAAATAGCAGATCTTGCCTTC
26753823 TTGTATAAGC
Statistics
Matches: 595, Mismatches: 75, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
88 595 1.00
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (88 bp):
CCTTGCCTCCCTGGGTTGCAGTGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTGCACCGACA
GCGAAGCAGATCGAAGACACCAG
Found at i:26753920 original size:44 final size:44
Alignment explanation
Indices: 26753855--26754151 Score: 317
Period size: 44 Copynumber: 6.8 Consensus size: 44
26753845 CGAAGCCAAT
* *
26753855 AATCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGAGTGTG
1 AATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTG
* *
26753899 AATCCTATCTCCCTGGTCAGCAGTAGAATA----GAAAATTGT-
1 AATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTG
*
26753938 AAGTCCTATCTCCCTGGCCAGCAGTGGAATAGGTTGAAGATTGTG
1 AA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTG
*
26753983 AGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTG
1 AATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTG
* * * * **
26754027 AGTCCTATCTCCCTAGACAGCAGAGGAATAGGTTGAAGATT-AC
1 AATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTG
* *
26754070 AAGTCCTATCTCCCTAGAT-AGCAGTGAAATAGGTTGAAGATTGT-
1 AA-TCCTATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGTG
* * *
26754114 AGA-CCTTATCTCCCTGAG-CAACAGCGGAGTAGGTTGAA
1 A-ATCC-TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAA
26754152 AATTACAGAT
Statistics
Matches: 214, Mismatches: 26, Indels: 26
0.80 0.10 0.10
Matches are distributed among these distances:
39 2 0.01
40 33 0.15
43 4 0.02
44 173 0.81
45 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.26
Consensus pattern (44 bp):
AATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTG
Found at i:26753963 original size:84 final size:85
Alignment explanation
Indices: 26753857--26754065 Score: 312
Period size: 84 Copynumber: 2.4 Consensus size: 85
26753847 AAGCCAATAA
26753857 TCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGAGTGTGAATCCTATCTCCCTGGTCAGCAG
1 TCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGAGTGTGAATCCTATCTCCCTGGTCAGCAG
26753922 TAGAATA-GAAAATTGTAAG
66 TAGAATAGGAAAATTGTAAG
* * *
26753941 TCCTATCTCCCTGGCCAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAGCAG
1 TCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGAGTGTGAATCCTATCTCCCTGGTCAGCAG
* * *
26754006 TGGAATAGGTTGAAGATTGTGAG
66 TAGAATA-G--GAAAATTGTAAG
* *
26754029 TCCTATCTCCCTAGACAGCAGAGGAATAGGTTGAAGA
1 TCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGA
26754066 TTACAAGTCC
Statistics
Matches: 112, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
84 68 0.61
88 44 0.39
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (85 bp):
TCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGAGTGTGAATCCTATCTCCCTGGTCAGCAG
TAGAATAGGAAAATTGTAAG
Found at i:26754061 original size:88 final size:87
Alignment explanation
Indices: 26753857--26754151 Score: 359
Period size: 88 Copynumber: 3.4 Consensus size: 87
26753847 AAGCCAATAA
* *
26753857 TCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGAGTGTGAATCCTATCTCCCTGGTCAGCAG
1 TCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAGCAG
* *
26753922 TAGAATA----GAAAATTGTAAG
66 TGGAATAGGTTGAAGATTGT-AG
*
26753941 TCCTATCTCCCTGGCCAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAGCAG
1 TCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAGCAG
26754006 TGGAATAGGTTGAAGATTGTGAG
66 TGGAATAGGTTGAAGATTGT-AG
* * *** *
26754029 TCCTATCTCCCTAGACAGCAGAGGAATAGGTTGAAGATTACAAGTCCTATCTCCCTAGAT-AGCA
1 TCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCT-GGTCAGCA
*
26754093 GTGAAATAGGTTGAAGATTGTAG
65 GTGGAATAGGTTGAAGATTGTAG
* * * *
26754116 ACCTTATCTCCCT-GAGCAACAGCGGAGTAGGTTGAA
1 TCC-TATCTCCCTGGA-CAGCAGTGGAATAGGTTGAA
26754152 AATTACAGAT
Statistics
Matches: 186, Mismatches: 18, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
84 68 0.37
87 6 0.03
88 110 0.59
89 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (87 bp):
TCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAGCAG
TGGAATAGGTTGAAGATTGTAG
Found at i:26754197 original size:132 final size:132
Alignment explanation
Indices: 26753938--26754197 Score: 276
Period size: 132 Copynumber: 2.0 Consensus size: 132
26753928 AGAAAATTGT
* * * * *
26753938 AAGTCCTATCTCCCTGGCCAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAG
1 AAGTCCTATCTCCCTAGACAGCAGTGAAATAGGTTGAAGATTGTGAGACCTATCTCCCTGGTCAA
* * ** * * * * *
26754003 CAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTAGACAGCAGAGGAATAGGTTGAAGATT
66 CAGCGGAATAGGTTGAAAATTCAGAGTCCTATCTCCATAGACAACAGAGGAACAGATCGAAGATT
26754068 AC
131 AC
*
26754070 AAGTCCTATCTCCCTAGATAGCAGTGAAATAGGTTGAAGATTGT-AGACCTTATCTCCCTGAG-C
1 AAGTCCTATCTCCCTAGACAGCAGTGAAATAGGTTGAAGATTGTGAGACC-TATCTCCCTG-GTC
* * * * *
26754133 AACAGCGGAGTAGGTTGAAAATTACAGA-TCTTATCTCCATA-AGCAATAGTGGAGCAGATCGAA
64 AACAGCGGAATAGGTTGAAAATT-CAGAGTCCTATCTCCATAGA-CAACAGAGGAACAGATCGAA
26754196 GA
127 GA
26754198 CGTGAATTTT
Statistics
Matches: 104, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
131 5 0.05
132 96 0.92
133 3 0.03
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (132 bp):
AAGTCCTATCTCCCTAGACAGCAGTGAAATAGGTTGAAGATTGTGAGACCTATCTCCCTGGTCAA
CAGCGGAATAGGTTGAAAATTCAGAGTCCTATCTCCATAGACAACAGAGGAACAGATCGAAGATT
AC
Found at i:26754332 original size:88 final size:88
Alignment explanation
Indices: 26754229--26754614 Score: 495
Period size: 88 Copynumber: 4.4 Consensus size: 88
26754219 CGAAGTAGAT
* * *
26754229 ACTAGCCTTGCCTCCCTAGGTTACAGCGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTGCAC
1 ACTAGCCTTGCCTCCTTGGGTTGCAGCGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTGCA-
26754294 CT-ACAGTGAAGCAGATCGAAGAC
65 CTGACAGTGAAGCAGATCGAAGAC
* * * * * ** *
26754317 ACTAGCATTGCCTCCCTGGGTTGTAGTGGAGCAGGCTGAAAATAGCAGATCTTATCTTCTTGCAC
1 ACTAGCCTTGCCTCCTTGGGTTGCAGCGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTGCAC
* *
26754382 CGACAGCGAAGCAGATCGAAGAC
66 TGACAGTGAAGCAGATCGAAGAC
* * * * *
26754405 ACTAGCCTTGCCTCTTTGGGTTGCAGCGGAGCAGGTTGAAGATAGCAAATCTTGCCTTCCTGTAT
1 ACTAGCCTTGCCTCCTTGGGTTGCAGCGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTGCAC
*
26754470 TGACAGTGAAGCAGATCGAAAAC
66 TGACAGTGAAGCAGATCGAAGAC
* * * * * *
26754493 ACTAGCCTTGCCTCCTTAGGTTGCAGCAGAGCAGGTTGAAGATGGCAGATCTTGCCTTCCTGTAT
1 ACTAGCCTTGCCTCCTTGGGTTGCAGCGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTGCAC
* *
26754558 TGGCAGTGAAACAGATCGAAGAC
66 TGACAGTGAAGCAGATCGAAGAC
* *
26754581 ACCAGCCTTGCCTCCTTGGGTTGTAGCGGAGCAG
1 ACTAGCCTTGCCTCCTTGGGTTGCAGCGGAGCAG
26754615 TTGCAATAGA
Statistics
Matches: 258, Mismatches: 39, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
87 1 0.00
88 257 1.00
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (88 bp):
ACTAGCCTTGCCTCCTTGGGTTGCAGCGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCCTGCAC
TGACAGTGAAGCAGATCGAAGAC
Found at i:26754591 original size:44 final size:44
Alignment explanation
Indices: 26754455--26754593 Score: 115
Period size: 44 Copynumber: 3.2 Consensus size: 44
26754445 GATAGCAAAT
* * *
26754455 CTTGCCTTCCTGTATTGACAGTGAAGCAGATCGAAAACACTAGC
1 CTTGCCTTCCTGTATTGGCAGTGAAGCAGATCGAAGACACCAGC
* * * *** *
26754499 CTTGCC-TCCT-TAGGTT-GCAG-CAGAGCAGGTTGAAGATGGCAGAT
1 CTTGCCTTCCTGTA--TTGGCAGTGA-AGCAGATCGAAGACACCAG-C
*
26754543 CTTGCCTTCCTGTATTGGCAGTGAAACAGATCGAAGACACCAGC
1 CTTGCCTTCCTGTATTGGCAGTGAAGCAGATCGAAGACACCAGC
26754587 CTTGCCT
1 CTTGCCT
26754594 CCTTGGGTTG
Statistics
Matches: 69, Mismatches: 18, Indels: 16
0.67 0.17 0.16
Matches are distributed among these distances:
42 3 0.04
43 19 0.28
44 23 0.33
45 21 0.30
46 3 0.04
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (44 bp):
CTTGCCTTCCTGTATTGGCAGTGAAGCAGATCGAAGACACCAGC
Found at i:26754700 original size:43 final size:44
Alignment explanation
Indices: 26754636--26754718 Score: 132
Period size: 43 Copynumber: 1.9 Consensus size: 44
26754626 TGGACCGCAT
* *
26754636 CAGGTCTTATCTCCCTGAAGTTGCAGCGGGGCAGACTGAATAAG
1 CAGGTCTTATCCCCCTAAAGTTGCAGCGGGGCAGACTGAATAAG
*
26754680 CAGGT-TTATCCCCCTAAAGTTGCAGTGGGGCAGACTGAA
1 CAGGTCTTATCCCCCTAAAGTTGCAGCGGGGCAGACTGAA
26754719 GATGGAAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
43 31 0.86
44 5 0.14
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (44 bp):
CAGGTCTTATCCCCCTAAAGTTGCAGCGGGGCAGACTGAATAAG
Found at i:26754823 original size:44 final size:44
Alignment explanation
Indices: 26754685--26755064 Score: 148
Period size: 44 Copynumber: 8.8 Consensus size: 44
26754675 ATAAGCAGGT
* * * * * *
26754685 TTATCCCCCTAAAGTTGCAGTGGGGCAGACTGAAGATGGAA-AATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGA--CAATAATC
*
26754730 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAATAATC
* ** *
26754774 CTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAATGAC-A-GATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAA-GACAATAATC
** * ** *
26754818 TTATCTCTTTGAGGTTGCA-AAGAGCAGA-T--CG-C-ATCAGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAAT-A-ATC
* * * * * *
26754858 TTATCTCTCTGAAGTTGCAG-AGAGCAGATCACA-TC-A-AGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAATAATC
* * * * * ** *
26754898 TTATCTCCCTAAAGTTGCAATGGAGCAGACTGAATA-AGCAGGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAATA-ATC
* * ****
26754942 TTATC-CTCCTGAAGTTGCAGTAGG-GCAGACTGAAGATGGCGAATC
1 TTATCTC-CCTGAAGTTGCAGT-GGAGCAGATTAAAGA-CAATAATC
*
26754987 TTATCTCCCT-AAGGTTGCAGTGGAGTAGATTAAAG-CAAATAATC
1 TTATCTCCCTGAA-GTTGCAGTGGAGCAGATTAAAGAC-AATAATC
* ** *
26755031 TTATCTCCTTGAAGTTGCAGCAGAACAGATTAAA
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA
26755065 ATGATCTTAT
Statistics
Matches: 254, Mismatches: 56, Indels: 51
0.70 0.16 0.14
Matches are distributed among these distances:
37 2 0.01
38 1 0.00
40 47 0.19
41 9 0.04
42 1 0.00
43 11 0.04
44 115 0.45
45 64 0.25
46 4 0.02
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (44 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAATAATC
Found at i:26754863 original size:40 final size:40
Alignment explanation
Indices: 26754812--26754926 Score: 142
Period size: 40 Copynumber: 2.9 Consensus size: 40
26754802 ATTAAAATGA
* * *
26754812 CAGATCTTATCTCTTTGAGGTTGCAAAGAGCAGATCGCAT
1 CAGATCTTATCTCTCTGAAGTTGCAAAGAGCAGATCACAT
*
26754852 CAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCACAT
1 CAGATCTTATCTCTCTGAAGTTGCAAAGAGCAGATCACAT
* * *
26754892 CA-AGTCTTATCTCCCTAAAGTTGCAATGGAGCAGA
1 CAGA-TCTTATCTCTCTGAAGTTGCAA-AGAGCAGA
26754927 CTGAATAAGC
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
39 1 0.02
40 57 0.88
41 7 0.11
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.28
Consensus pattern (40 bp):
CAGATCTTATCTCTCTGAAGTTGCAAAGAGCAGATCACAT
Found at i:26755004 original size:45 final size:43
Alignment explanation
Indices: 26754640--26755011 Score: 157
Period size: 44 Copynumber: 8.6 Consensus size: 43
26754630 CCGCATCAGG
* * * *
26754640 TCTTATCTCCCTGAAGTTGCAGCGGGGCAGACTGAATAAGCAGG
1 TCTTATCTCCCT-AAGTTGCAGTGGAGCAGACTGAAGAAGCAGA
* * * * *
26754684 T-TTATCCCCCTAAAGTTGCAGTGGGGCAGACTGAAGATGGAAAA
1 TCTTATCTCCCT-AAGTTGCAGTGGAGCAGACTGAAGA-AGCAGA
* * *
26754728 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAA-TA-A
1 TCTTATCTCCCT-AAGTTGCAGTGGAGCAGACTGAAG--AAGCAGA
* ** *
26754772 TCCTATCTCCCTGAAGTTGCAGTGGAGTGGA-TTAA-AATGACAGA
1 TCTTATCTCCCT-AAGTTGCAGTGGAGCAGACTGAAGAA-G-CAGA
** * ** * * *
26754816 TCTTATCTCTTTGAGGTTGCA-AAGAGCAGA-T--CGCATCAGA
1 TCTTATCTCCCT-AAGTTGCAGTGGAGCAGACTGAAGAAGCAGA
* * * * *
26754856 TCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CA-CATCA-A
1 TCTTATCTCCCT-AAGTTGCAGTGGAGCAGACTGAAGAAGCAGA
* * *
26754895 GTCTTATCTCCCTAAAGTTGCAATGGAGCAGACTGAATAAGCAGG
1 -TCTTATCTCCCT-AAGTTGCAGTGGAGCAGACTGAAGAAGCAGA
*
26754940 TCTTATC-CTCCTGAAGTTGCAGTAGG-GCAGACTGAAGATGGC-GAA
1 TCTTATCTC-CCT-AAGTTGCAGT-GGAGCAGACTGAAGA-AGCAG-A
26754985 TCTTATCTCCCTAAGGTTGCAGTGGAG
1 TCTTATCTCCCTAA-GTTGCAGTGGAG
26755012 TAGATTAAAG
Statistics
Matches: 257, Mismatches: 47, Indels: 47
0.73 0.13 0.13
Matches are distributed among these distances:
39 1 0.00
40 58 0.23
41 7 0.03
42 2 0.01
43 44 0.17
44 89 0.35
45 54 0.21
46 1 0.00
47 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (43 bp):
TCTTATCTCCCTAAGTTGCAGTGGAGCAGACTGAAGAAGCAGA
Found at i:26755006 original size:213 final size:213
Alignment explanation
Indices: 26754770--26755175 Score: 509
Period size: 213 Copynumber: 1.9 Consensus size: 213
26754760 TAAAGCCAAT
* * * * *
26754770 AATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAATG-ACA-GATCTTATCTCTTTGAGGT
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGTAGATT-AAA-GCAAATAATCTTATCTCCTTGAAGT
* ** * *
26754833 TGCA-AAGAGCAGATC-GCATCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCACATCAAG
64 TGCAGAAGAACAGATCAAAAT--GATCTTATCTCTCTAAAGTTGCAAAGAGCAGATCACATCAAG
* * *
26754896 TCTTATCTCCCTAAAGTTGCAATGGAGCAGACT-GAATAAGCAGGTCTTATCCTCCTGAAGTTGC
127 TCTTATCTCCCTAAAGTTGCAACGGAGCAGACTGGAA-AAGCAAGTCTTATCCTCCGGAAGTTGC
26754960 AGTAGGGCAGACTGAAGATGGCG
191 AGTAGGGCAGACTGAAGATGGCG
*
26754983 AATCTTATCTCCCT-AAGGTTGCAGTGGAGTAGATTAAAGCAAATAATCTTATCTCCTTGAAGTT
1 AATCCTATCTCCCTGAA-GTTGCAGTGGAGTAGATTAAAGCAAATAATCTTATCTCCTTGAAGTT
* * *
26755047 GCAGCAGAACAGATTAAAATGATCTTATCTCTCTAAAGTTGCAAAGAGCAGATCGCATCAAGTCT
65 GCAGAAGAACAGATCAAAATGATCTTATCTCTCTAAAGTTGCAAAGAGCAGATCACATCAAGTCT
* * * * * *
26755112 TATCTCTCTGAGGTTGCAGCGGAGCAGACTGGGAAAGCAAGTCTTATCCTTCGGAAGTTGCAGT
130 TATCTCCCTAAAGTTGCAACGGAGCAGACTGGAAAAGCAAGTCTTATCCTCCGGAAGTTGCAGT
26755176 GGAGGAAACT
Statistics
Matches: 164, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
211 1 0.01
212 7 0.04
213 144 0.88
214 10 0.06
215 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (213 bp):
AATCCTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCAAATAATCTTATCTCCTTGAAGTTG
CAGAAGAACAGATCAAAATGATCTTATCTCTCTAAAGTTGCAAAGAGCAGATCACATCAAGTCTT
ATCTCCCTAAAGTTGCAACGGAGCAGACTGGAAAAGCAAGTCTTATCCTCCGGAAGTTGCAGTAG
GGCAGACTGAAGATGGCG
Found at i:26755155 original size:257 final size:253
Alignment explanation
Indices: 26754639--26755159 Score: 697
Period size: 257 Copynumber: 2.0 Consensus size: 253
26754629 ACCGCATCAG
* * *
26754639 GTCTTATCTCCCTGAAGTTGCAGCGGGGCAGACTGAATAAGCAGGTTTATCCCCCTAAAGTTGCA
1 GTCTTATCTCCCTAAAGTTGCAACGGAGCAGACTGAATAAGCAGGTTTATCCCCCTAAAGTTGCA
* *
26754704 GTGGGGCAGACTGAAGATGGAAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAA
66 GTAGGGCAGACTGAAGATGGAAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAAA
** *** * * *
26754769 TAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAATGACAGATCTTATCTCTTTGAGGTT
131 TAATCCTATCTCCCTGAAGTTGCAGCAGAACAGATTAAAAT---AGATCTTATCTCTCTAAAGTT
* *
26754834 GCAAAGAGCAGATCGCATCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCACATCAA
193 GCAAAGAGCAGATCGCATCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCAAAGCAA
* * *
26754895 GTCTTATCTCCCTAAAGTTGCAATGGAGCAGACTGAATAAGCAGGTCTTATCCTCCTGAAGTTGC
1 GTCTTATCTCCCTAAAGTTGCAACGGAGCAGACTGAATAAGCAGGT-TTATCCCCCTAAAGTTGC
** *
26754960 AGTAGGGCAGACTGAAGATGGCGAATCTTATCTCCCT-AAGGTTGCAGTGGAGTAGATTAAAGCA
65 AGTAGGGCAGACTGAAGATGGAAAATCTTATCTCCCTGAA-GTTGCAGTGGAGCAGATTAAAGCA
* *
26755024 AATAATCTTATCTCCTTGAAGTTGCAGCAGAACAGATTAAAAT-GATCTTATCTCTCTAAAGTTG
129 AATAATCCTATCTCCCTGAAGTTGCAGCAGAACAGATTAAAATAGATCTTATCTCTCTAAAGTTG
* * *
26755088 CAAAGAGCAGATCGCATCA-AGTCTTATCTCTCTGAGGTTGCAGCGGAGCAGACTGGGAAAGCAA
194 CAAAGAGCAGATCGCATCAGA-TCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T--CAAAGCAA
26755152 GTCTTATC
1 GTCTTATC
26755160 CTTCGGAAGT
Statistics
Matches: 232, Mismatches: 26, Indels: 13
0.86 0.10 0.05
Matches are distributed among these distances:
252 1 0.00
253 58 0.25
254 7 0.03
255 1 0.00
256 44 0.19
257 121 0.52
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.27
Consensus pattern (253 bp):
GTCTTATCTCCCTAAAGTTGCAACGGAGCAGACTGAATAAGCAGGTTTATCCCCCTAAAGTTGCA
GTAGGGCAGACTGAAGATGGAAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAAA
TAATCCTATCTCCCTGAAGTTGCAGCAGAACAGATTAAAATAGATCTTATCTCTCTAAAGTTGCA
AAGAGCAGATCGCATCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCAAAGCAA
Found at i:26755172 original size:44 final size:45
Alignment explanation
Indices: 26755105--26755202 Score: 110
Period size: 44 Copynumber: 2.2 Consensus size: 45
26755095 CAGATCGCAT
* * * *
26755105 CAAGTCTTATCTCTCTGAGGTTGCAGCGGAGCAGACTGGGAA-AG
1 CAAGTCTTATCTCTCGGAAGTTGCAGCGGAGCAAACTGAGAATAG
* *
26755149 CAAGTCTTATC-CTTCGGAAGTTGCAGTGGAGGAAACTGAGAATAG
1 CAAGTCTTATCTC-TCGGAAGTTGCAGCGGAGCAAACTGAGAATAG
*
26755194 CAAATCTTA
1 CAAGTCTTA
26755203 CTTCCCTAGC
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
43 1 0.02
44 34 0.76
45 10 0.22
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (45 bp):
CAAGTCTTATCTCTCGGAAGTTGCAGCGGAGCAAACTGAGAATAG
Found at i:26756131 original size:13 final size:13
Alignment explanation
Indices: 26756113--26756137 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26756103 TTTTGATTGT
26756113 AAAGAAAAGGAGA
1 AAAGAAAAGGAGA
26756126 AAAGAAAAGGAG
1 AAAGAAAAGGAG
26756138 GAGTTAGAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (13 bp):
AAAGAAAAGGAGA
Found at i:26760304 original size:36 final size:38
Alignment explanation
Indices: 26760263--26760338 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 38
26760253 GGGCATTCCG
* *
26760263 TTTGTCAG--TTATACCAACTAGTGCTGGGCA-CATTTA
1 TTTGTCAGTCTTA-ACCAACCAGTGCAGGGCACCATTTA
*
26760299 TTTGTCAGTCTTAACCGACCAGTGCAGGGCACCATTTA
1 TTTGTCAGTCTTAACCAACCAGTGCAGGGCACCATTTA
26760337 TT
1 TT
26760339 ATTATGGATT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
36 8 0.24
37 15 0.44
38 11 0.32
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (38 bp):
TTTGTCAGTCTTAACCAACCAGTGCAGGGCACCATTTA
Found at i:26763982 original size:7 final size:7
Alignment explanation
Indices: 26763952--26763999 Score: 51
Period size: 8 Copynumber: 6.1 Consensus size: 7
26763942 TTTCAAAATT
26763952 ATTAAAA
1 ATTAAAA
26763959 ATTTTAAAA
1 A--TTAAAA
26763968 ATTCAAAA
1 ATT-AAAA
26763976 ATTAAAAA
1 ATT-AAAA
26763984 ATTAAAA
1 ATTAAAA
26763991 ATTATAAA
1 ATTA-AAA
26763999 A
1 A
26764000 ATATAAATAT
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
7 11 0.31
8 18 0.50
9 7 0.19
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (7 bp):
ATTAAAA
Found at i:26763982 original size:15 final size:14
Alignment explanation
Indices: 26763952--26763999 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 14
26763942 TTTCAAAATT
26763952 ATTAAAAATTTTAAAA
1 ATTAAAAA--TTAAAA
26763968 ATTCAAAAATTAAAAA
1 ATT-AAAAATT-AAAA
26763984 ATTAAAAATTATAAA
1 ATTAAAAATTA-AAA
26763999 A
1 A
26764000 ATATAAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
14 1 0.03
15 13 0.45
16 10 0.34
17 5 0.17
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (14 bp):
ATTAAAAATTAAAA
Found at i:26764006 original size:17 final size:16
Alignment explanation
Indices: 26763952--26764016 Score: 78
Period size: 16 Copynumber: 3.9 Consensus size: 16
26763942 TTTCAAAATT
*
26763952 ATTAAAAATTTTAAAA
1 ATTAAAAATTATAAAA
26763968 ATTCAAAAATTA-AAAA
1 ATT-AAAAATTATAAAA
26763984 ATTAAAAATTATAAAA
1 ATTAAAAATTATAAAA
*
26764000 ATATAAATATTACTAAA
1 AT-TAAAAATTA-TAAA
26764017 TTATTACAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
15 8 0.19
16 16 0.37
17 15 0.35
18 4 0.09
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (16 bp):
ATTAAAAATTATAAAA
Found at i:26769881 original size:14 final size:15
Alignment explanation
Indices: 26769862--26769902 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
26769852 GTTTGCCAGT
26769862 AAAATG-TTTACT-A
1 AAAATGATTTACTGA
26769875 GAAAATGATTT-CTGA
1 -AAAATGATTTACTGA
26769890 AAAATGATTTACT
1 AAAATGATTTACT
26769903 TTTTTGAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 18 0.75
15 6 0.25
ACGTcount: A:0.44, C:0.07, G:0.12, T:0.37
Consensus pattern (15 bp):
AAAATGATTTACTGA
Found at i:26781480 original size:19 final size:19
Alignment explanation
Indices: 26781440--26781482 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
26781430 AATTCCGTAG
*
26781440 AGAAATGAAAATAAATCTA
1 AGAAATGAAAATAAATCAA
*
26781459 AGAAATGAAGATAAAAT-AA
1 AGAAATGAAAAT-AAATCAA
26781478 AGAAA
1 AGAAA
26781483 GATGTAGATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.67, C:0.02, G:0.14, T:0.16
Consensus pattern (19 bp):
AGAAATGAAAATAAATCAA
Found at i:26786202 original size:45 final size:45
Alignment explanation
Indices: 26786143--26786239 Score: 140
Period size: 45 Copynumber: 2.2 Consensus size: 45
26786133 CTTTAGGGGG
* * *
26786143 ATAAGACTTGCTTTCTTGAGTGTGCTCCACTGCATCTTCAGGGAA
1 ATAAGACTCGCTTTCTTGAGTCTGCTCCACTACATCTTCAGGGAA
* * *
26786188 ATAATACTCGCTTTCTTGGGTCTGCTCCACTACATCTTCAGGGAG
1 ATAAGACTCGCTTTCTTGAGTCTGCTCCACTACATCTTCAGGGAA
26786233 ATAAGAC
1 ATAAGAC
26786240 CTGCTATGAT
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.32
Consensus pattern (45 bp):
ATAAGACTCGCTTTCTTGAGTCTGCTCCACTACATCTTCAGGGAA
Found at i:26786500 original size:217 final size:218
Alignment explanation
Indices: 26786247--26786670 Score: 618
Period size: 217 Copynumber: 1.9 Consensus size: 218
26786237 GACCTGCTAT
* ** *
26786247 GATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTATCACTTTAATCTTCTCCACTGTAACTTCA
1 GATCTGCTCTCGGCAACTTCAGAGAGATAAGATCTATCACTTTAATCCACTCCACTGCAACTTCA
*
26786312 AGGAGATAGGATTATTGGATTTAATCTGCTCCACTGCAACCTCAGGGAGATAAGATTCGCCATCT
66 AGGAGATAGAATTATTGGATTTAATCTGCTCCACTGCAACCTCAGGGAGATAAGATTCGCCATCT
* * * * * * *
26786377 TGGGTCTGCTCCACTACGACTTCA-GAAGGATAAAACTTGCTTACT-CAGTCTACTCCATTGCAA
131 TGAGTCTGCTCCACTACAACTTCAGGAA-AATAAAACCTGCTTACTCCAATCCACTCCACTGCAA
26786440 CTTCAAGGAGTTAAGACTAGGTGC
195 CTTCAAGGAGTTAAGACTAGGTGC
26786464 GATCTGCTCTCGGCAACTTCAGAGAGATAAGATCTATCACTTTAATCCACTCCACTGCAACTTCA
1 GATCTGCTCTCGGCAACTTCAGAGAGATAAGATCTATCACTTTAATCCACTCCACTGCAACTTCA
* * * * *
26786529 GGGAGATAGAATTATTTGCTTTAATCTGCTCCATTGCAACTTCAGGGAGATAAGATTCGCCATCT
66 AGGAGATAGAATTATTGGATTTAATCTGCTCCACTGCAACCTCAGGGAGATAAGATTCGCCATCT
* * * * *
26786594 TTAGTCTGCTCCACTGCAATTTCAGGAAAATAAGACCTGCTTACTCCAATCCACTCCACTGTAAC
131 TGAGTCTGCTCCACTACAACTTCAGGAAAATAAAACCTGCTTACTCCAATCCACTCCACTGCAAC
*
26786659 TTTAAGGAGTTA
196 TTCAAGGAGTTA
26786671 GGATTCATGC
Statistics
Matches: 182, Mismatches: 23, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
217 153 0.84
218 29 0.16
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.30
Consensus pattern (218 bp):
GATCTGCTCTCGGCAACTTCAGAGAGATAAGATCTATCACTTTAATCCACTCCACTGCAACTTCA
AGGAGATAGAATTATTGGATTTAATCTGCTCCACTGCAACCTCAGGGAGATAAGATTCGCCATCT
TGAGTCTGCTCCACTACAACTTCAGGAAAATAAAACCTGCTTACTCCAATCCACTCCACTGCAAC
TTCAAGGAGTTAAGACTAGGTGC
Found at i:26786612 original size:45 final size:45
Alignment explanation
Indices: 26786116--26786628 Score: 137
Period size: 44 Copynumber: 11.7 Consensus size: 45
26786106 GATAGGATTC
* * * * ** *
26786116 AGTCTGCCCCACTGTAACTTTAGGGGGATAAGACTT-GCTTTCTTG
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTCGCCATCTTT
* * * * * ** *
26786161 AGTGTGCTCCACTGCATCTTCAGGGAAATAATACTCGCTTTCTTG
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTT
* * * *
26786206 GGTCTGCTCCACTACATCTTCAGGGAGATAAGA----CC-TGCTAT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCAT-CTTT
* * **
26786247 -GATCTGCT-CTCTGCAACTTCAGAGAGATAAGA-TCTATCA-CTTT
1 AG-TCTGCTCCACTGCAACTTCAGGGAGATAAGATTC-GCCATCTTT
* * * * * * *
26786290 AATCTTCTCCACTGTAACTTCAAGGAGATAGGATTATTG-GA--TTT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGA-T-TCGCCATCTTT
* * *
26786334 AATCTGCTCCACTGCAACCTCAGGGAGATAAGATTCGCCATCTTG
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTT
* * * * * * *
26786379 GGTCTGCTCCACTACGACTTCA-GAAGGATAAAACTT-G-CTTAC-TC
1 AGTCTGCTCCACTGCAACTTCAGGGA-GATAAGA-TTCGCCAT-CTTT
* * * * * * * *
26786423 AGTCTACTCCATTGCAACTTCAAGGAGTTAAGACTAG--GTGC--G
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCAT-CTTT
* * * **
26786465 A-TCTGCT-CTCGGCAACTTCAGAGAGATAAGA-TCTATCA-CTTT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTC-GCCATCTTT
* ** ***
26786507 AATCCACTCCACTGCAACTTCAGGGAGAT-AGAATT--ATTTGCTTT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAG-ATTCGCCAT-CTTT
* *
26786551 AATCTGCTCCATTGCAACTTCAGGGAGATAAGATTCGCCATCTTT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTT
* * *
26786596 AGTCTGCTCCACTGCAATTTCAGGAAAATAAGA
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGA
26786629 CCTGCTTACT
Statistics
Matches: 341, Mismatches: 92, Indels: 70
0.68 0.18 0.14
Matches are distributed among these distances:
39 1 0.00
40 41 0.12
41 14 0.04
42 4 0.01
43 19 0.06
44 131 0.38
45 127 0.37
46 3 0.01
47 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (45 bp):
AGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTT
Found at i:26798540 original size:35 final size:35
Alignment explanation
Indices: 26798491--26798572 Score: 137
Period size: 35 Copynumber: 2.3 Consensus size: 35
26798481 TATTCATTAG
* * *
26798491 AAAATATATATAAATGTATTTACATGTACATATAT
1 AAAAAATAAATAAATATATTTACATGTACATATAT
26798526 AAAAAATAAATAAATATATTTACATGTACATATAT
1 AAAAAATAAATAAATATATTTACATGTACATATAT
26798561 AAAAAATAAATA
1 AAAAAATAAATA
26798573 TATACATATA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 44 1.00
ACGTcount: A:0.57, C:0.05, G:0.04, T:0.34
Consensus pattern (35 bp):
AAAAAATAAATAAATATATTTACATGTACATATAT
Found at i:26798608 original size:28 final size:27
Alignment explanation
Indices: 26798555--26798634 Score: 101
Period size: 28 Copynumber: 3.0 Consensus size: 27
26798545 TTACATGTAC
*
26798555 ATATATAAAAAATAAATAT-A-TACAT
1 ATATATAAAAAATAAAAATAATTACAT
**
26798580 ATATATAAATTATAAAAAATAATTACAT
1 ATATATAAAAAAT-AAAAATAATTACAT
*
26798608 ATATATAAAAAATAATAATAATTACAT
1 ATATATAAAAAATAAAAATAATTACAT
26798635 TCTTGAAATT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
25 11 0.24
26 5 0.11
27 14 0.30
28 16 0.35
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (27 bp):
ATATATAAAAAATAAAAATAATTACAT
Found at i:26801484 original size:23 final size:22
Alignment explanation
Indices: 26801441--26801498 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
26801431 AAAAGGTATC
* *
26801441 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
26801462 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
26801485 TGCATATCATATCT
1 TACAAATCATATCT
26801499 AAGATTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:26801501 original size:19 final size:19
Alignment explanation
Indices: 26801477--26801551 Score: 114
Period size: 19 Copynumber: 3.8 Consensus size: 19
26801467 AATCATATCT
26801477 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
26801496 TCTAAGATTGTATATATCATA
1 TCTAAGATTG--CATATCATA
*
26801517 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
26801536 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
26801552 CTTGAAGAGT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
19 33 0.66
21 17 0.34
ACGTcount: A:0.37, C:0.15, G:0.09, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:26801514 original size:21 final size:21
Alignment explanation
Indices: 26801488--26801550 Score: 94
Period size: 21 Copynumber: 3.1 Consensus size: 21
26801478 CTAAGATTGC
26801488 ATATCATATCTAAGATTGTAT
1 ATATCATATCTAAGATTGTAT
*
26801509 ATATCATATCTAAGA-T-TAC
1 ATATCATATCTAAGATTGTAT
*
26801528 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGTAT
26801549 AT
1 AT
26801551 CCTTGAAGAG
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
19 17 0.46
20 2 0.05
21 18 0.49
ACGTcount: A:0.40, C:0.13, G:0.08, T:0.40
Consensus pattern (21 bp):
ATATCATATCTAAGATTGTAT
Found at i:26804555 original size:180 final size:180
Alignment explanation
Indices: 26804253--26804614 Score: 724
Period size: 180 Copynumber: 2.0 Consensus size: 180
26804243 CCAAAGCAAT
26804253 TTGGTAATTAGCCTAACACATATAACCTCAACAAGCATGTTAGTCATGTATTTCATGTGAATAAC
1 TTGGTAATTAGCCTAACACATATAACCTCAACAAGCATGTTAGTCATGTATTTCATGTGAATAAC
26804318 AAGAATAAGGATGAGCTCATCAGGTATCGAGTTTCCAAGTATTTCATGCATATACAAATAATAGT
66 AAGAATAAGGATGAGCTCATCAGGTATCGAGTTTCCAAGTATTTCATGCATATACAAATAATAGT
26804383 TTCATTTTGATTTCACATGTTCTTATGTCAGAATTTCACCCGTTGAATCA
131 TTCATTTTGATTTCACATGTTCTTATGTCAGAATTTCACCCGTTGAATCA
26804433 TTGGTAATTAGCCTAACACATATAACCTCAACAAGCATGTTAGTCATGTATTTCATGTGAATAAC
1 TTGGTAATTAGCCTAACACATATAACCTCAACAAGCATGTTAGTCATGTATTTCATGTGAATAAC
26804498 AAGAATAAGGATGAGCTCATCAGGTATCGAGTTTCCAAGTATTTCATGCATATACAAATAATAGT
66 AAGAATAAGGATGAGCTCATCAGGTATCGAGTTTCCAAGTATTTCATGCATATACAAATAATAGT
26804563 TTCATTTTGATTTCACATGTTCTTATGTCAGAATTTCACCCGTTGAATCA
131 TTCATTTTGATTTCACATGTTCTTATGTCAGAATTTCACCCGTTGAATCA
26804613 TT
1 TT
26804615 TGAAATCTCG
Statistics
Matches: 182, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
180 182 1.00
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (180 bp):
TTGGTAATTAGCCTAACACATATAACCTCAACAAGCATGTTAGTCATGTATTTCATGTGAATAAC
AAGAATAAGGATGAGCTCATCAGGTATCGAGTTTCCAAGTATTTCATGCATATACAAATAATAGT
TTCATTTTGATTTCACATGTTCTTATGTCAGAATTTCACCCGTTGAATCA
Found at i:26804808 original size:25 final size:25
Alignment explanation
Indices: 26804780--26804942 Score: 81
Period size: 24 Copynumber: 6.6 Consensus size: 25
26804770 ATCCGGGCAA
26804780 TATAATGGGAAGCTCACAAAGAGCC
1 TATAATGGGAAGCTCACAAAGAGCC
* *
26804805 TATAACGGGTAGCTC-CAAAGAG-C
1 TATAATGGGAAGCTCACAAAGAGCC
* * ** *
26804828 AATTAATGGGAAGCAC-CGGATAGCC
1 TA-TAATGGGAAGCTCACAAAGAGCC
* * **
26804853 ATATAATGGAAAGTTCA-AGCGAGCAC
1 -TATAATGGGAAGCTCACAAAGAGC-C
26804879 TA-ACA--GGAAGCTCACAAAGAGCC
1 TATA-ATGGGAAGCTCACAAAGAGCC
* * * *
26804902 TTTAATCGGAAAGCTCACGAAGAGTC
1 TATAAT-GGGAAGCTCACAAAGAGCC
*
26804928 -ATAATGGGATGCTCA
1 TATAATGGGAAGCTCA
26804943 TAAGAGCTGC
Statistics
Matches: 100, Mismatches: 27, Indels: 23
0.67 0.18 0.15
Matches are distributed among these distances:
23 12 0.12
24 36 0.36
25 35 0.35
26 17 0.17
ACGTcount: A:0.38, C:0.20, G:0.25, T:0.18
Consensus pattern (25 bp):
TATAATGGGAAGCTCACAAAGAGCC
Found at i:26815723 original size:20 final size:20
Alignment explanation
Indices: 26815685--26815724 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
26815675 TCTTTCTTTC
*
26815685 TTCTTTTATTTACTTAATTA
1 TTCTTTTATTTACTAAATTA
*
26815705 TTCTTTTATTTGCTAAATTA
1 TTCTTTTATTTACTAAATTA
26815725 CTACTTTGGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.25, C:0.10, G:0.03, T:0.62
Consensus pattern (20 bp):
TTCTTTTATTTACTAAATTA
Found at i:26817994 original size:13 final size:12
Alignment explanation
Indices: 26817971--26818004 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
26817961 ATTATTTGTG
26817971 AAAATATAAAAAT
1 AAAA-ATAAAAAT
26817984 ATAAAATAAAAAT
1 A-AAAATAAAAAT
26817997 AAAAATAA
1 AAAAATAA
26818005 TATATTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 7 0.35
13 10 0.50
14 3 0.15
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (12 bp):
AAAAATAAAAAT
Found at i:26817997 original size:6 final size:6
Alignment explanation
Indices: 26817971--26818004 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
26817961 ATTATTTGTG
26817971 AAAATAT AAAAAT ATAAAAT AAAAAT AAAAAT AA
1 AAAA-AT AAAAAT A-AAAAT AAAAAT AAAAAT AA
26818005 TATATTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 16 0.62
7 10 0.38
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (6 bp):
AAAAAT
Found at i:26818910 original size:3 final size:3
Alignment explanation
Indices: 26818902--26818930 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
26818892 AAATCTTATA
26818902 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
26818931 AACGATAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:26819319 original size:23 final size:23
Alignment explanation
Indices: 26819293--26819336 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
26819283 TAAGCTCCTC
*
26819293 CGATTTCGATCGTCGGCGATCGG
1 CGATTGCGATCGTCGGCGATCGG
* *
26819316 CGATTGGGATCGTTGGCGATC
1 CGATTGCGATCGTCGGCGATC
26819337 AAGCGGAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.14, C:0.23, G:0.36, T:0.27
Consensus pattern (23 bp):
CGATTGCGATCGTCGGCGATCGG
Found at i:26824854 original size:18 final size:19
Alignment explanation
Indices: 26824831--26824866 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
26824821 GGCCTGTATG
26824831 GCCCAAAACCAA-TAAACA
1 GCCCAAAACCAACTAAACA
*
26824849 GCCCAAACCCAACTAAAC
1 GCCCAAAACCAACTAAAC
26824867 CTAAACCCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.50, C:0.39, G:0.06, T:0.06
Consensus pattern (19 bp):
GCCCAAAACCAACTAAACA
Found at i:26825222 original size:14 final size:14
Alignment explanation
Indices: 26825196--26825239 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
26825186 AGTTGTGCCG
26825196 TTTTTATTT-TTTA
1 TTTTTATTTATTTA
26825209 TTTTTATTTATTTA
1 TTTTTATTTATTTA
**
26825223 TTTACATTTATTT-
1 TTTTTATTTATTTA
26825236 TTTT
1 TTTT
26825240 AAAAACAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
13 12 0.44
14 15 0.56
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTTTATTTATTTA
Found at i:26825232 original size:18 final size:18
Alignment explanation
Indices: 26825198--26825240 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
26825188 TTGTGCCGTT
**
26825198 TTTATTT-TTTATTTTTA
1 TTTATTTATTTACATTTA
26825215 TTTATTTATTTACATTTA
1 TTTATTTATTTACATTTA
*
26825233 TTTTTTTA
1 TTTATTTA
26825241 AAAACAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTATTTATTTACATTTA
Found at i:26838315 original size:51 final size:50
Alignment explanation
Indices: 26838260--26838677 Score: 341
Period size: 51 Copynumber: 8.5 Consensus size: 50
26838250 TATTTCCTTG
* *
26838260 GCGTTGTAATGGAACAGATTAAAGCTGAAGGCAGAGAATCTTTTTTCCCTA
1 GCGTTGTAGTGG-ACAGATTAAAGCTGAAGGCAGCGAATCTTTTTTCCCTA
** *
26838311 GCGTTACAGT----AGATTAAAGCTGAAGGCAGCGAATCTTTTTTTCCTTA
1 GCGTTGTAGTGGACAGATTAAAGCTGAAGGCAGCGAATC-TTTTTTCCCTA
* * * * *
26838358 GTGTTGCAGTAGGACAGATTAAAGTTGAAGGCAGCAAATC-TTTTTCCCTG
1 GCGTTGTAGT-GGACAGATTAAAGCTGAAGGCAGCGAATCTTTTTTCCCTA
*
26838408 GCGTTGTAGT----AGATTAAAGCTGAAGGCAGCGAATCTTACTTT-CCTA
1 GCGTTGTAGTGGACAGATTAAAGCTGAAGGCAGCGAATCTT-TTTTCCCTA
* * * *
26838454 GCGTCGCT-GTGGAACAGATTAATGCTGAAGGTAGCGAATCTTATTTCCCTA
1 GCGTTG-TAGTGG-ACAGATTAAAGCTGAAGGCAGCGAATCTTTTTTCCCTA
* ** * *
26838505 GCGTTGCAGTAGGACAGATTAAAATTGAAGGCAACGAATC-TTTTTCCCTG
1 GCGTTGTAGT-GGACAGATTAAAGCTGAAGGCAGCGAATCTTTTTTCCCTA
* * * *
26838555 GCGTTGCAGT----AGATTAAAGTTGAAGGCAGCGAATCTTACTTT-CTTA
1 GCGTTGTAGTGGACAGATTAAAGCTGAAGGCAGCGAATCTT-TTTTCCCTA
* * **
26838601 GCGTCGCT-GTGGAACAAATTAAAGCTGAAGGCAGCGAATCTAATTTCCCTA
1 GCGTTG-TAGTGG-ACAGATTAAAGCTGAAGGCAGCGAATCTTTTTTCCCTA
* *
26838652 GTGTTGTAGTGGAATAGATTAAAGCT
1 GCGTTGTAGTGG-ACAGATTAAAGCT
26838678 ACAAGTTACG
Statistics
Matches: 294, Mismatches: 46, Indels: 54
0.75 0.12 0.14
Matches are distributed among these distances:
45 46 0.16
46 45 0.15
47 25 0.09
50 41 0.14
51 112 0.38
52 25 0.09
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (50 bp):
GCGTTGTAGTGGACAGATTAAAGCTGAAGGCAGCGAATCTTTTTTCCCTA
Found at i:26838436 original size:97 final size:96
Alignment explanation
Indices: 26838269--26838516 Score: 329
Period size: 97 Copynumber: 2.6 Consensus size: 96
26838259 GGCGTTGTAA
*
26838269 TGGAACAGATTAAAGCTGAAGGCAG-AGAATCTTTTTTCCCTAGCGTTACAGTAGATTAAAGCTG
1 TGGAACAGATTAAAGCTGAAGGCAGCA-AATC-TTTTTCCCTAGCGTTGCAGTAGATTAAAGCTG
** * *
26838333 AAGGCAGCGAATCTTTTTTTCCTTAGTGTTGCAG
64 AAGGCAGCGAATCTTACTTTCC-TAGCGTCGCAG
* * *
26838367 TAGG-ACAGATTAAAGTTGAAGGCAGCAAATCTTTTTCCCTGGCGTTGTAGTAGATTAAAGCTGA
1 T-GGAACAGATTAAAGCTGAAGGCAGCAAATCTTTTTCCCTAGCGTTGCAGTAGATTAAAGCTGA
*
26838431 AGGCAGCGAATCTTACTTTCCTAGCGTCGCTG
65 AGGCAGCGAATCTTACTTTCCTAGCGTCGCAG
* * *
26838463 TGGAACAGATTAATGCTGAAGGTAGCGAATCTTATTTCCCTAGCGTTGCAGTAG
1 TGGAACAGATTAAAGCTGAAGGCAGCAAATCTT-TTTCCCTAGCGTTGCAGTAG
26838517 GACAGATTAA
Statistics
Matches: 131, Mismatches: 15, Indels: 9
0.85 0.10 0.06
Matches are distributed among these distances:
95 2 0.02
96 34 0.26
97 67 0.51
98 25 0.19
99 3 0.02
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (96 bp):
TGGAACAGATTAAAGCTGAAGGCAGCAAATCTTTTTCCCTAGCGTTGCAGTAGATTAAAGCTGAA
GGCAGCGAATCTTACTTTCCTAGCGTCGCAG
Found at i:26838545 original size:147 final size:147
Alignment explanation
Indices: 26838321--26838674 Score: 548
Period size: 147 Copynumber: 2.4 Consensus size: 147
26838311 GCGTTACAGT
* * *
26838321 AGATTAAAGCTGAAGGCAGCGAATCTTTTTTTCCTTAGTGTTGCAGTAGGACAGATTAAAGTTGA
1 AGATTAAAGCTGAAGGCAGCGAATC-TTATTTCCCTAGTGTTGCAGTAGGACAGATTAAAATTGA
* *
26838386 AGGCAGCAAATCTTTTTCCCTGGCGTTGTAGTAGATTAAAGCTGAAGGCAGCGAATCTTACTTTC
65 AGGCAACAAATCTTTTTCCCTGGCGTTGCAGTAGATTAAAGCTGAAGGCAGCGAATCTTACTTTC
26838451 CTAGCGTCGCTGTGGAAC
130 CTAGCGTCGCTGTGGAAC
* * *
26838469 AGATTAATGCTGAAGGTAGCGAATCTTATTTCCCTAGCGTTGCAGTAGGACAGATTAAAATTGAA
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTAGTGTTGCAGTAGGACAGATTAAAATTGAA
* * *
26838534 GGCAACGAATCTTTTTCCCTGGCGTTGCAGTAGATTAAAGTTGAAGGCAGCGAATCTTACTTTCT
66 GGCAACAAATCTTTTTCCCTGGCGTTGCAGTAGATTAAAGCTGAAGGCAGCGAATCTTACTTTCC
26838599 TAGCGTCGCTGTGGAAC
131 TAGCGTCGCTGTGGAAC
* * * *
26838616 AAATTAAAGCTGAAGGCAGCGAATCTAATTTCCCTAGTGTTGTAGT-GGAATAGATTAAA
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTAGTGTTGCAGTAGG-ACAGATTAAA
26838675 GCTACAAGTT
Statistics
Matches: 187, Mismatches: 18, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
146 2 0.01
147 162 0.87
148 23 0.12
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (147 bp):
AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTAGTGTTGCAGTAGGACAGATTAAAATTGAA
GGCAACAAATCTTTTTCCCTGGCGTTGCAGTAGATTAAAGCTGAAGGCAGCGAATCTTACTTTCC
TAGCGTCGCTGTGGAAC
Found at i:26838569 original size:96 final size:97
Alignment explanation
Indices: 26838469--26838650 Score: 226
Period size: 96 Copynumber: 1.9 Consensus size: 97
26838459 GCTGTGGAAC
* * * * *
26838469 AGATTAATGCTGAAGGTAGCGAATCTTA-TTTCCCTAGCGTTGCAGTAGG-ACAGATTAAAATTG
1 AGATTAAAGCTGAAGGCAGCGAATCTTACTTT-CCTAGCGTCGCAGT-GGAACAAATTAAAACTG
*
26838532 AAGGCAACGAATCT-TTTTCCCTGGCGTTGCAGT
64 AAGGCAACGAATCTAATTTCCCTGGCGTTGCAGT
* * * *
26838565 AGATTAAAGTTGAAGGCAGCGAATCTTACTTTCTTAGCGTCGCTGTGGAACAAATTAAAGCTGAA
1 AGATTAAAGCTGAAGGCAGCGAATCTTACTTTCCTAGCGTCGCAGTGGAACAAATTAAAACTGAA
*
26838630 GGCAGCGAATCTAATTTCCCT
66 GGCAACGAATCTAATTTCCCT
26838651 AGTGTTGTAG
Statistics
Matches: 72, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
95 2 0.03
96 60 0.83
97 10 0.14
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (97 bp):
AGATTAAAGCTGAAGGCAGCGAATCTTACTTTCCTAGCGTCGCAGTGGAACAAATTAAAACTGAA
GGCAACGAATCTAATTTCCCTGGCGTTGCAGT
Found at i:26839474 original size:14 final size:15
Alignment explanation
Indices: 26839450--26839486 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
26839440 GTGCCGTTTT
26839450 TATTT-TTTATTT-C
1 TATTTATTTATTTAC
26839463 TATTTATTTATTTAC
1 TATTTATTTATTTAC
26839478 -ATTTATTTA
1 TATTTATTTA
26839487 AAAAAACAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 5 0.23
14 16 0.73
15 1 0.05
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.70
Consensus pattern (15 bp):
TATTTATTTATTTAC
Found at i:26839545 original size:27 final size:26
Alignment explanation
Indices: 26839506--26839567 Score: 115
Period size: 26 Copynumber: 2.4 Consensus size: 26
26839496 AAAATGAGAA
26839506 GTAAAAGATAAAAATCGTACCTTTTT
1 GTAAAAGATAAAAATCGTACCTTTTT
26839532 GTAAAAGATAAAAATCGTACCTTTTT
1 GTAAAAGATAAAAATCGTACCTTTTT
*
26839558 GTGAAAGATA
1 GTAAAAGATA
26839568 TGTCGATTCT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.44, C:0.10, G:0.15, T:0.32
Consensus pattern (26 bp):
GTAAAAGATAAAAATCGTACCTTTTT
Found at i:26845289 original size:71 final size:71
Alignment explanation
Indices: 26845173--26845308 Score: 209
Period size: 71 Copynumber: 1.9 Consensus size: 71
26845163 GGTGAATGTT
* * * *
26845173 TAACCATGGTGAATAGCATTTCTAGGCGGACTCTAACATCAGACGCATGCCTTCTTCCTTAACCT
1 TAACCATGGCGAATAACATTTCTAGGCAGACTCTAACATCAGACGCATACCTTCTTCCTTAACCT
26845238 CGGGTG
66 CGGGTG
* * *
26845244 TAACCATGGCGGATAACATTTTTAGGCAGACTCTAACATCGGACGCATACCTTCTTCCTTAACCT
1 TAACCATGGCGAATAACATTTCTAGGCAGACTCTAACATCAGACGCATACCTTCTTCCTTAACCT
26845309 TAGGTGTATA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
71 58 1.00
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (71 bp):
TAACCATGGCGAATAACATTTCTAGGCAGACTCTAACATCAGACGCATACCTTCTTCCTTAACCT
CGGGTG
Found at i:26845626 original size:48 final size:48
Alignment explanation
Indices: 26845560--26845690 Score: 192
Period size: 48 Copynumber: 2.7 Consensus size: 48
26845550 TTATATATAA
* * *
26845560 CATATAACACACATAGAGTTCTATTAACTTACTTTTTTTGATACATAT
1 CATATATCACATATAGAGTTCTATTAACTTACTCTTTTTGATACATAT
* *
26845608 CATATATCACATACAGAGTCCTATTAACTTACTCTTTTTGATACATAT
1 CATATATCACATATAGAGTTCTATTAACTTACTCTTTTTGATACATAT
*
26845656 CATATATCACATATAGAG-TCATACTAACTTACTCT
1 CATATATCACATATAGAGTTC-TATTAACTTACTCT
26845691 ATTCGAATTC
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
47 1 0.01
48 73 0.99
ACGTcount: A:0.35, C:0.20, G:0.06, T:0.39
Consensus pattern (48 bp):
CATATATCACATATAGAGTTCTATTAACTTACTCTTTTTGATACATAT
Found at i:26846022 original size:49 final size:48
Alignment explanation
Indices: 26845942--26846065 Score: 126
Period size: 49 Copynumber: 2.5 Consensus size: 48
26845932 GGCTATCAAC
* * * * *
26845942 CTAGTTAACAACTAACATATCC-TACTAGTGGCCCAAT-AGACATGCCAAT
1 CTAGTTAGCAACTAACAT-GCCTTACCAGTGGCCC-ATCACAC-TACCAAT
* *
26845991 CTGGTTAGCAACTAACATGCCTTACCAGTGGCCCATCACATCTACCATT
1 CTAGTTAGCAACTAACATGCCTTACCAGTGGCCCATCACA-CTACCAAT
*
26846040 CTAGTTTGCAACTAACATGCCTTACC
1 CTAGTTAGCAACTAACATGCCTTACC
26846066 GGTGACTCTT
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
48 4 0.06
49 58 0.92
50 1 0.02
ACGTcount: A:0.31, C:0.30, G:0.13, T:0.27
Consensus pattern (48 bp):
CTAGTTAGCAACTAACATGCCTTACCAGTGGCCCATCACACTACCAAT
Found at i:26853302 original size:83 final size:84
Alignment explanation
Indices: 26853215--26853382 Score: 320
Period size: 83 Copynumber: 2.0 Consensus size: 84
26853205 TACACTATCC
26853215 ATTAGGGCAAAATTTTTATTAATTTTGATCTCCCATGGTTATACATTTTATTAATTTAGTTTATA
1 ATTAGGGCAAAATTTTTATTAATTTTGATCTCCCATGGTTATACATTTTATTAATTTAGTTTATA
26853280 AAGAAATT-CCTTTTACAT
66 AAGAAATTACCTTTTACAT
26853298 ATTAGGGCAAAATTTTTATTAATTTTGATCTCCCATGGTTATACATTTTATTAATTTAGTTTATA
1 ATTAGGGCAAAATTTTTATTAATTTTGATCTCCCATGGTTATACATTTTATTAATTTAGTTTATA
26853363 AAGAAATTCACCTTTTACAT
66 AAGAAATT-ACCTTTTACAT
26853383 TTATAAATTA
Statistics
Matches: 83, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
83 73 0.88
85 10 0.12
ACGTcount: A:0.33, C:0.11, G:0.10, T:0.46
Consensus pattern (84 bp):
ATTAGGGCAAAATTTTTATTAATTTTGATCTCCCATGGTTATACATTTTATTAATTTAGTTTATA
AAGAAATTACCTTTTACAT
Found at i:26862357 original size:19 final size:19
Alignment explanation
Indices: 26862333--26862372 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
26862323 GTCATGATTA
26862333 AATCTCAAATTAATAACTC
1 AATCTCAAATTAATAACTC
26862352 AATCTCAAATTAATAACTC
1 AATCTCAAATTAATAACTC
26862371 AA
1 AA
26862373 AAATATTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (19 bp):
AATCTCAAATTAATAACTC
Found at i:26864812 original size:24 final size:25
Alignment explanation
Indices: 26864757--26864817 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 25
26864747 TAATTGTATA
* *
26864757 TATATATTATTATATTTTTATAATT
1 TATAAATTATAATATTTTTATAATT
26864782 TATAAATTATAAT-TTTTTATATATT
1 TATAAATTATAATATTTTTATA-ATT
*
26864807 TA-AAATAATAA
1 TATAAATTATAA
26864818 CCTAAAAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 16 0.50
25 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (25 bp):
TATAAATTATAATATTTTTATAATT
Done.