Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43060996
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2186021 characters in sequence are not A, C, G, or T
File 98 of 128
Found at i:32547815 original size:10 final size:10
Alignment explanation
Indices: 32547802--32547827 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
32547792 TTAATTTTTC
32547802 TTTTTTTTAT
1 TTTTTTTTAT
32547812 TTTTTTTTAT
1 TTTTTTTTAT
32547822 TTTTTT
1 TTTTTT
32547828 GGACTCAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTTTAT
Found at i:32547825 original size:16 final size:17
Alignment explanation
Indices: 32547788--32547825 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
32547778 TAGCCTCTCC
32547788 ATTTTTAATTTTTCTTT
1 ATTTTTAATTTTTCTTT
*
32547805 -TTTTT-ATTTTTTTTT
1 ATTTTTAATTTTTCTTT
32547820 ATTTTT
1 ATTTTT
32547826 TTGGACTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.84
Consensus pattern (17 bp):
ATTTTTAATTTTTCTTT
Found at i:32547872 original size:46 final size:46
Alignment explanation
Indices: 32547821--32547910 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
32547811 TTTTTTTTTA
* * *
32547821 TTTTTTT-GGACTCAAAGCGCCCTTTGCGGGTTTTTACCTTGGTCT
1 TTTTTTTAGGACTCAAAGCGCCCTTTACGAGTTTTCACCTTGGTCT
*
32547866 TTTTTTTAGGACTCAAAGTGCCCTTTACGAGTTTTCACCTTGGTC
1 TTTTTTTAGGACTCAAAGCGCCCTTTACGAGTTTTCACCTTGGTC
32547911 CCTTCTCCTT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
45 7 0.17
46 33 0.82
ACGTcount: A:0.14, C:0.22, G:0.20, T:0.43
Consensus pattern (46 bp):
TTTTTTTAGGACTCAAAGCGCCCTTTACGAGTTTTCACCTTGGTCT
Found at i:32548672 original size:22 final size:22
Alignment explanation
Indices: 32548644--32548685 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
32548634 ATTAATGATC
32548644 TAAAAAATGAAGCAATGCCCAT
1 TAAAAAATGAAGCAATGCCCAT
32548666 TAAAAAATGAAGCAATGCCC
1 TAAAAAATGAAGCAATGCCC
32548686 TTTGCTGGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.50, C:0.19, G:0.14, T:0.17
Consensus pattern (22 bp):
TAAAAAATGAAGCAATGCCCAT
Found at i:32548726 original size:11 final size:11
Alignment explanation
Indices: 32548712--32548751 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
32548702 TTGGCCTCTC
32548712 CTTTTTCTTTT
1 CTTTTTCTTTT
32548723 CTTTTAT-TTTT
1 CTTTT-TCTTTT
*
32548734 CCTTTTCTTTT
1 CTTTTTCTTTT
32548745 CTTTTTC
1 CTTTTTC
32548752 CATCATTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
10 1 0.04
11 23 0.92
12 1 0.04
ACGTcount: A:0.03, C:0.20, G:0.00, T:0.78
Consensus pattern (11 bp):
CTTTTTCTTTT
Found at i:32548738 original size:17 final size:17
Alignment explanation
Indices: 32548713--32548752 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
32548703 TGGCCTCTCC
32548713 TTTTT-CTTTTCTTTTA
1 TTTTTCCTTTTCTTTTA
*
32548729 TTTTTCCTTTTCTTTTC
1 TTTTTCCTTTTCTTTTA
32548746 TTTTTCC
1 TTTTTCC
32548753 ATCATTTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.03, C:0.20, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTTTCCTTTTCTTTTA
Found at i:32551437 original size:16 final size:16
Alignment explanation
Indices: 32551412--32551444 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
32551402 TTCTATGATG
32551412 AAATGCCATGCAGTCA
1 AAATGCCATGCAGTCA
*
32551428 AAATGTCATGCAGTCA
1 AAATGCCATGCAGTCA
32551444 A
1 A
32551445 GACAAAACAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.21
Consensus pattern (16 bp):
AAATGCCATGCAGTCA
Found at i:32552542 original size:24 final size:25
Alignment explanation
Indices: 32552515--32552572 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 25
32552505 GAAAATGAGC
*
32552515 TTAAAATAACTAATATA-AATTGA-T
1 TTAAAATAAATAATATAGAA-TGATT
* *
32552539 TTAAAGTAAATAGTATAGAATGATT
1 TTAAAATAAATAATATAGAATGATT
32552564 TTAAAATAA
1 TTAAAATAA
32552573 TTATTATATA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
24 17 0.61
25 11 0.39
ACGTcount: A:0.53, C:0.02, G:0.09, T:0.36
Consensus pattern (25 bp):
TTAAAATAAATAATATAGAATGATT
Found at i:32554273 original size:72 final size:72
Alignment explanation
Indices: 32554192--32554336 Score: 254
Period size: 72 Copynumber: 2.0 Consensus size: 72
32554182 TACATGCTCC
* *
32554192 TAACCAATCACTTGTATTTCTATAAGCTCAAGCACATAAAACACAAGAAAAATCAAAGAAAATGT
1 TAACCAATCACTTGTATTTCTACAAGCTCAAGCACACAAAACACAAGAAAAATCAAAGAAAATGT
32554257 AAAAATT
66 AAAAATT
* *
32554264 TAACCAATCACTTGTATTTCTACAAGCTCAAGCACACAAAAGACAAGAAAAATCAATGAAAATGT
1 TAACCAATCACTTGTATTTCTACAAGCTCAAGCACACAAAACACAAGAAAAATCAAAGAAAATGT
32554329 AAAAATT
66 AAAAATT
32554336 T
1 T
32554337 GAAGCAAATT
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
72 69 1.00
ACGTcount: A:0.50, C:0.17, G:0.09, T:0.23
Consensus pattern (72 bp):
TAACCAATCACTTGTATTTCTACAAGCTCAAGCACACAAAACACAAGAAAAATCAAAGAAAATGT
AAAAATT
Found at i:32560017 original size:129 final size:128
Alignment explanation
Indices: 32559780--32560020 Score: 313
Period size: 129 Copynumber: 1.9 Consensus size: 128
32559770 CTCAAAAATC
* *
32559780 TCGATATCAGAATTTACGACGTTTCAAAATATTATATCAAGAGGTTTTCTAAGAAAAAGTATCAA
1 TCGATATCAGAATTTACGAAGTTTCAAAATATTATATCAAAAGGTTTTCTAAGAAAAAGTATCAA
* * * *
32559845 ATTATTCATATATTTTAGTAAAAGAGCATTCTCATCAGAAAATCTCCATTGAGATAAAGAATT
66 ATTATTCATATAATTTAGTAAAAGAGAATTCCCACCAGAAAATCTCCATTGAGATAAAGAATT
** * * * * * *
32559908 TCGATATCAGAATTTGTGAAGTTTTAAAATGTTATA-CTAAAAGGTTTTTTGATAAATGAGTATC
1 TCGATATCAGAATTTACGAAGTTTCAAAATATTATATC-AAAAGGTTTTCTAAGAAA-AAGTATC
* *
32559972 AAATTATTCATATAATTTCGTAAAAGAGAATTCCCACCAGGAAATCTCC
64 AAATTATTCATATAATTTAGTAAAAGAGAATTCCCACCAGAAAATCTCC
32560021 TTTAGTTAGT
Statistics
Matches: 95, Mismatches: 16, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
127 1 0.01
128 45 0.47
129 49 0.52
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.34
Consensus pattern (128 bp):
TCGATATCAGAATTTACGAAGTTTCAAAATATTATATCAAAAGGTTTTCTAAGAAAAAGTATCAA
ATTATTCATATAATTTAGTAAAAGAGAATTCCCACCAGAAAATCTCCATTGAGATAAAGAATT
Found at i:32560205 original size:120 final size:120
Alignment explanation
Indices: 32560042--32560282 Score: 365
Period size: 120 Copynumber: 2.0 Consensus size: 120
32560032 GAGATGAAGG
* **
32560042 ATTTCATTAAATTAGGCTATAGACTATATTGCAAGAAAATTCAAATTGTGTGGTTAATTGTATAA
1 ATTTCATTAAATTAGGCTATAGACTATATTGAAAGAAAATTCAAATTAAGTGGTTAATTGTATAA
* * * *
32560107 AGTATTGATTTTTAGTAAGGAAAGAAGGAAAGGGTTTATGATGTTATTTTACCCA
66 AGTATTGATTTTTAGTAAGAAAAGAAAGAAAGGGTTTATGAGGTAATTTTACCCA
* * *
32560162 ATTTTATTAAATTAGGCTATGGACTATTTTGAAAGAAAATTCAAATTAAGTGGTTAATTGTATAA
1 ATTTCATTAAATTAGGCTATAGACTATATTGAAAGAAAATTCAAATTAAGTGGTTAATTGTATAA
* * *
32560227 AGTATTGGTTTTTTGTAAGAAAAGAAAGAAAGGGTTTATGGGGTAATTTTACCCA
66 AGTATTGATTTTTAGTAAGAAAAGAAAGAAAGGGTTTATGAGGTAATTTTACCCA
32560282 A
1 A
32560283 GGTCTATTGT
Statistics
Matches: 108, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
120 108 1.00
ACGTcount: A:0.37, C:0.06, G:0.20, T:0.37
Consensus pattern (120 bp):
ATTTCATTAAATTAGGCTATAGACTATATTGAAAGAAAATTCAAATTAAGTGGTTAATTGTATAA
AGTATTGATTTTTAGTAAGAAAAGAAAGAAAGGGTTTATGAGGTAATTTTACCCA
Found at i:32560315 original size:120 final size:118
Alignment explanation
Indices: 32560074--32560307 Score: 292
Period size: 120 Copynumber: 2.0 Consensus size: 118
32560064 ACTATATTGC
** * *
32560074 AAGAAAATTCAAATTGTGTGGTTAATTGTATAAAGTATTGATTTTTAGTAAGGAAAGAAGGAAAG
1 AAGAAAATTCAAATTAAGTGGTTAATTGTATAAAGTATTGATTTTTAGTAAGAAAAGAAAGAAAG
* * * * * * **
32560139 GGTTTATGATGTTATTTTACCCAATTTTATTAAATTAGGCTATGGACTATTTTGA
66 GGTTTATGAGGTAATTTTACCCAAGTCTATT--AGTAGGCTAGGGAAAATTTTGA
* *
32560194 AAGAAAATTCAAATTAAGTGGTTAATTGTATAAAGTATTGGTTTTTTGTAAGAAAAGAAAGAAAG
1 AAGAAAATTCAAATTAAGTGGTTAATTGTATAAAGTATTGATTTTTAGTAAGAAAAGAAAGAAAG
*
32560259 GGTTTATGGGGTAATTTTACCCAAGGTCTATT-GTA-GCTAGGGAAAATTT
66 GGTTTATGAGGTAATTTTACCCAA-GTCTATTAGTAGGCTAGGGAAAATTT
32560308 ATGTGAAAAA
Statistics
Matches: 98, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
117 11 0.11
118 2 0.02
120 80 0.82
121 5 0.05
ACGTcount: A:0.37, C:0.05, G:0.21, T:0.37
Consensus pattern (118 bp):
AAGAAAATTCAAATTAAGTGGTTAATTGTATAAAGTATTGATTTTTAGTAAGAAAAGAAAGAAAG
GGTTTATGAGGTAATTTTACCCAAGTCTATTAGTAGGCTAGGGAAAATTTTGA
Found at i:32566437 original size:13 final size:13
Alignment explanation
Indices: 32566399--32566440 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
32566389 TGGACATAGA
* *
32566399 TATATGAAACAGT
1 TATATGAAATATT
*
32566412 TATATGAAGTATT
1 TATATGAAATATT
32566425 TATATGAAATATT
1 TATATGAAATATT
32566438 TAT
1 TAT
32566441 TGGAATATAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.43, C:0.02, G:0.12, T:0.43
Consensus pattern (13 bp):
TATATGAAATATT
Found at i:32572669 original size:20 final size:21
Alignment explanation
Indices: 32572640--32572683 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
32572630 AAAATAAAGG
32572640 AAAAAAATTTTAA-AAT-TTAT
1 AAAAAAA-TTTAATAATATTAT
*
32572660 AAAAACATTTAATAATATTAT
1 AAAAAAATTTAATAATATTAT
32572681 AAA
1 AAA
32572684 CATTAATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 5 0.24
20 9 0.43
21 7 0.33
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (21 bp):
AAAAAAATTTAATAATATTAT
Found at i:32575522 original size:13 final size:12
Alignment explanation
Indices: 32575500--32575529 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
32575490 ATGTTAAGTT
32575500 ATTTGTGTGAAA
1 ATTTGTGTGAAA
32575512 ATTTCGTGTGAAA
1 ATTT-GTGTGAAA
32575525 ATTTG
1 ATTTG
32575530 ATCGTTTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.30, C:0.03, G:0.23, T:0.43
Consensus pattern (12 bp):
ATTTGTGTGAAA
Found at i:32577217 original size:41 final size:41
Alignment explanation
Indices: 32577160--32577243 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
32577150 TTTGTTTCTG
32577160 AATCTCTCAGGCTTTGTGCCTAGCAGGCTTAACGCCGGTGA
1 AATCTCTCAGGCTTTGTGCCTAGCAGGCTTAACGCCGGTGA
32577201 AATCTCTCAGGCTTTGTGCCTAGCAGGCTTAACGCCGGTGA
1 AATCTCTCAGGCTTTGTGCCTAGCAGGCTTAACGCCGGTGA
32577242 AA
1 AA
32577244 AATTTCGGAC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.26
Consensus pattern (41 bp):
AATCTCTCAGGCTTTGTGCCTAGCAGGCTTAACGCCGGTGA
Found at i:32577265 original size:41 final size:41
Alignment explanation
Indices: 32577164--32577273 Score: 132
Period size: 41 Copynumber: 2.7 Consensus size: 41
32577154 TTTCTGAATC
* * **
32577164 TCTCAGGCTTTGTGCCTAGCAGGCTTAACGCCGGTGAAATC
1 TCTCAGGCTATATGCCTAGCAGGCTTAACGCCGGTGAAAAA
* *
32577205 TCTCAGGCTTTGTGCCTAGCAGGCTTAACGCCGGTGAAAAA
1 TCTCAGGCTATATGCCTAGCAGGCTTAACGCCGGTGAAAAA
* *
32577246 TTTC-GGACTATATGTCTAGCAGGCTTAA
1 TCTCAGG-CTATATGCCTAGCAGGCTTAA
32577274 TGTCGGTGTT
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
40 2 0.03
41 60 0.97
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.28
Consensus pattern (41 bp):
TCTCAGGCTATATGCCTAGCAGGCTTAACGCCGGTGAAAAA
Found at i:32588400 original size:17 final size:17
Alignment explanation
Indices: 32588339--32588401 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
32588329 CGAGCAAGAT
32588339 AAAAAATAATATAAATGAA
1 AAAAAATAA-ATAAAT-AA
* *
32588358 AACACAAATTAATAAACAA
1 AA-A-AAATAAATAAATAA
**
32588377 ATGAAATAAATAAATAA
1 AAAAAATAAATAAATAA
32588394 AAAAAATA
1 AAAAAATA
32588402 CAGAATAAAA
Statistics
Matches: 34, Mismatches: 8, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
17 18 0.53
19 5 0.15
20 6 0.18
21 5 0.15
ACGTcount: A:0.73, C:0.05, G:0.03, T:0.19
Consensus pattern (17 bp):
AAAAAATAAATAAATAA
Found at i:32590446 original size:44 final size:44
Alignment explanation
Indices: 32590389--32590506 Score: 132
Period size: 44 Copynumber: 2.7 Consensus size: 44
32590379 GATGTGATCT
* *
32590389 ACTCTACTGTAACTTCAGAGAGATAAGATCT-GTGGTTTTAATCC
1 ACTCCACTGTAACTTCAGAGAGATAAGAT-TAGTGGCTTTAATCC
* * *
32590433 ACTCCACTGTAACTTCA-AGGAGATAGGATTATTGGCTTTAATCT
1 ACTCCACTGTAACTTCAGA-GAGATAAGATTAGTGGCTTTAATCC
* * *
32590477 GCTCCACTGCAACTTCAGGGAGATAAGATT
1 ACTCCACTGTAACTTCAGAGAGATAAGATT
32590507 CGCCATCTTC
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
43 2 0.03
44 60 0.97
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.31
Consensus pattern (44 bp):
ACTCCACTGTAACTTCAGAGAGATAAGATTAGTGGCTTTAATCC
Found at i:32590690 original size:100 final size:100
Alignment explanation
Indices: 32590527--32590714 Score: 297
Period size: 100 Copynumber: 1.9 Consensus size: 100
32590517 AATCTTTCAT
* *
32590527 TGTTGGGGAAACGAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAGTAAA
1 TGTTGGGGAAACGAGATTCACAGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAGTAAA
*
32590592 ATTCACTATTGCGGCTTCAATCTTTTTAATTGCAA
66 ATTCACCATTGCGGCTTCAATCTTTTTAATTGCAA
32590627 TGTTGGGGAAACGAGATTCACAGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGAGG-AGTAA
1 TGTTGGGGAAACGAGATTCACAGTCGTAGCTTCAATCTGTTCCACTACACCGCCAG-GGAAGTAA
* * * *
32590691 GATTCGCCGTTGCGGCTTTAATCT
65 AATTCACCATTGCGGCTTCAATCT
32590715 ATTCCACTGA
Statistics
Matches: 80, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
100 78 0.98
101 2 0.03
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (100 bp):
TGTTGGGGAAACGAGATTCACAGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAGTAAA
ATTCACCATTGCGGCTTCAATCTTTTTAATTGCAA
Found at i:32590747 original size:100 final size:100
Alignment explanation
Indices: 32590534--32590737 Score: 239
Period size: 100 Copynumber: 2.0 Consensus size: 100
32590524 CATTGTTGGG
* * *
32590534 GAAACGAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAGTAAAATTCACT
1 GAAACGAGATTCACAGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAGTAAAATTCACC
* * * * ** *
32590599 ATTGCGGCTTCAATCTTTTTAATTGCAATGTTGGG
66 ATTGCGGCTTCAATCTATTCAACTGAAATGTAAGA
* *
32590634 GAAACGAGATTCACAGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGAGG-AGTAAGATTCGC
1 GAAACGAGATTCACAGTCGTAGCTTCAATCTGTTCCACTACACCGCCAG-GGAAGTAAAATTCAC
* * *
32590698 CGTTGCGGCTTTAATCTATTCCACTGAAATGCTAAAGA
65 CATTGCGGCTTCAATCTATTCAACTGAAATG-T-AAGA
32590736 GA
1 GA
32590738 TAGGATTCAC
Statistics
Matches: 86, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
100 80 0.93
101 3 0.03
102 3 0.03
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (100 bp):
GAAACGAGATTCACAGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAGTAAAATTCACC
ATTGCGGCTTCAATCTATTCAACTGAAATGTAAGA
Found at i:32601891 original size:170 final size:170
Alignment explanation
Indices: 32601609--32601954 Score: 692
Period size: 170 Copynumber: 2.0 Consensus size: 170
32601599 GTGCTAAATC
32601609 TCTCAATGAATTAATTTTGGTACGGCTCAATTGATTGTACCACTTGGATGCTGCCCTTGTGAGGC
1 TCTCAATGAATTAATTTTGGTACGGCTCAATTGATTGTACCACTTGGATGCTGCCCTTGTGAGGC
32601674 TATCCTGGAAGCAATGTATCAGCAGTTGGTCGTTGTTAACATACATAGTCATTCGTCTGCAAAAC
66 TATCCTGGAAGCAATGTATCAGCAGTTGGTCGTTGTTAACATACATAGTCATTCGTCTGCAAAAC
32601739 ATAGAAATATGAGCTTCGGGGCTACTAGTTCTGTTGTACT
131 ATAGAAATATGAGCTTCGGGGCTACTAGTTCTGTTGTACT
32601779 TCTCAATGAATTAATTTTGGTACGGCTCAATTGATTGTACCACTTGGATGCTGCCCTTGTGAGGC
1 TCTCAATGAATTAATTTTGGTACGGCTCAATTGATTGTACCACTTGGATGCTGCCCTTGTGAGGC
32601844 TATCCTGGAAGCAATGTATCAGCAGTTGGTCGTTGTTAACATACATAGTCATTCGTCTGCAAAAC
66 TATCCTGGAAGCAATGTATCAGCAGTTGGTCGTTGTTAACATACATAGTCATTCGTCTGCAAAAC
32601909 ATAGAAATATGAGCTTCGGGGCTACTAGTTCTGTTGTACT
131 ATAGAAATATGAGCTTCGGGGCTACTAGTTCTGTTGTACT
32601949 TCTCAA
1 TCTCAA
32601955 ACTCTGGCAT
Statistics
Matches: 176, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
170 176 1.00
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (170 bp):
TCTCAATGAATTAATTTTGGTACGGCTCAATTGATTGTACCACTTGGATGCTGCCCTTGTGAGGC
TATCCTGGAAGCAATGTATCAGCAGTTGGTCGTTGTTAACATACATAGTCATTCGTCTGCAAAAC
ATAGAAATATGAGCTTCGGGGCTACTAGTTCTGTTGTACT
Found at i:32606489 original size:29 final size:29
Alignment explanation
Indices: 32606457--32606513 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
32606447 GTATAAATAC
*
32606457 AAAAATATTTATTAAAAAATA-AAATATAG
1 AAAAATATTCA-TAAAAAATATAAATATAG
32606486 AAAAATATTCATAAAAAATATAAATATA
1 AAAAATATTCATAAAAAATATAAATATA
32606514 TATATGTAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 9 0.35
29 17 0.65
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (29 bp):
AAAAATATTCATAAAAAATATAAATATAG
Found at i:32607375 original size:20 final size:20
Alignment explanation
Indices: 32607350--32607388 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
32607340 TTCGTTTATA
32607350 AAAAATA-AAACAATAAATAG
1 AAAAATAGAAA-AATAAATAG
32607370 AAAAATAGAAAAATAAATA
1 AAAAATAGAAAAATAAATA
32607389 AATATTGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 15 0.83
21 3 0.17
ACGTcount: A:0.77, C:0.03, G:0.05, T:0.15
Consensus pattern (20 bp):
AAAAATAGAAAAATAAATAG
Found at i:32608809 original size:26 final size:27
Alignment explanation
Indices: 32608780--32608843 Score: 64
Period size: 26 Copynumber: 2.4 Consensus size: 27
32608770 TAATTTTTTA
32608780 TGAAAATTTTGTATTTTTTT-AAATTT
1 TGAAAATTTTGTATTTTTTTAAAATTT
* *
32608806 TG--AATTTGGAAATTTTTTTAAAATTT
1 TGAAAATTTTG-TATTTTTTTAAAATTT
32608832 T-AAAATATTTGT
1 TGAAAAT-TTTGT
32608844 TAACTTTAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 9
0.69 0.10 0.21
Matches are distributed among these distances:
24 6 0.21
25 8 0.28
26 9 0.31
27 3 0.10
28 3 0.10
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.56
Consensus pattern (27 bp):
TGAAAATTTTGTATTTTTTTAAAATTT
Found at i:32612114 original size:17 final size:17
Alignment explanation
Indices: 32612089--32612122 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
32612079 AATGTTTCAA
32612089 AAAAAGAAAAAAAAAAG
1 AAAAAGAAAAAAAAAAG
* *
32612106 AAAAGGAAAAAACAAAG
1 AAAAAGAAAAAAAAAAG
32612123 TTACAAGCAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.82, C:0.03, G:0.15, T:0.00
Consensus pattern (17 bp):
AAAAAGAAAAAAAAAAG
Found at i:32612115 original size:16 final size:17
Alignment explanation
Indices: 32612086--32612122 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
32612076 ATCAATGTTT
32612086 CAAA-AAAAGAAAAAAA
1 CAAAGAAAAGAAAAAAA
*
32612102 -AAAGAAAAGGAAAAAA
1 CAAAGAAAAGAAAAAAA
32612118 CAAAG
1 CAAAG
32612123 TTACAAGCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 3 0.17
16 11 0.61
17 4 0.22
ACGTcount: A:0.81, C:0.05, G:0.14, T:0.00
Consensus pattern (17 bp):
CAAAGAAAAGAAAAAAA
Found at i:32624501 original size:38 final size:37
Alignment explanation
Indices: 32624459--32624531 Score: 110
Period size: 37 Copynumber: 1.9 Consensus size: 37
32624449 ATGTGTGGAA
* *
32624459 TTGAATTGAATATTGACTTGAAAATGGAAAAGTGAATT
1 TTGAATTGAATAATGA-TTGAAAATGAAAAAGTGAATT
*
32624497 TTGAATTGAATAATGATTGAAAGTGAAAAAGTGAA
1 TTGAATTGAATAATGATTGAAAATGAAAAAGTGAA
32624532 ATTATGAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
37 17 0.53
38 15 0.47
ACGTcount: A:0.45, C:0.01, G:0.22, T:0.32
Consensus pattern (37 bp):
TTGAATTGAATAATGATTGAAAATGAAAAAGTGAATT
Found at i:32627535 original size:29 final size:29
Alignment explanation
Indices: 32627503--32627611 Score: 107
Period size: 29 Copynumber: 3.7 Consensus size: 29
32627493 ACTTTGACTA
32627503 TCGAATATGAAAAGGGATGGTGACAACCT
1 TCGAATATGAAAAGGGATGGTGACAACCT
* * **
32627532 TCGAATATGAAAAGGGATAGCT-TC-GGCT
1 TCGAATATGAAAAGGGAT-GGTGACAACCT
* *
32627560 ATCGATTATGAAAAGGGATGGTGACAACCA
1 -TCGAATATGAAAAGGGATGGTGACAACCT
32627590 TC-AATTAATGAAAAGGGATGGT
1 TCGAA-T-ATGAAAAGGGATGGT
32627612 TTCAGCCAGC
Statistics
Matches: 63, Mismatches: 11, Indels: 11
0.74 0.13 0.13
Matches are distributed among these distances:
28 5 0.08
29 40 0.63
30 18 0.29
ACGTcount: A:0.38, C:0.12, G:0.28, T:0.23
Consensus pattern (29 bp):
TCGAATATGAAAAGGGATGGTGACAACCT
Found at i:32627570 original size:58 final size:59
Alignment explanation
Indices: 32627479--32627608 Score: 183
Period size: 58 Copynumber: 2.2 Consensus size: 59
32627469 ATCATCGACC
* * *
32627479 AATGAAAAAGGATAACTTTGACTATCGAATATGAAAAGGGATGGTGACAACCTTCGAA-T
1 AATGAAAAGGGATAACTTCGACTATCGAATATGAAAAGGGATGGTGACAACCATC-AATT
* * *
32627538 -ATGAAAAGGGATAGCTTCGGCTATCGATTATGAAAAGGGATGGTGACAACCATCAATT
1 AATGAAAAGGGATAACTTCGACTATCGAATATGAAAAGGGATGGTGACAACCATCAATT
32627596 AATGAAAAGGGAT
1 AATGAAAAGGGAT
32627609 GGTTTCAGCC
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
57 2 0.03
58 49 0.78
59 12 0.19
ACGTcount: A:0.41, C:0.12, G:0.25, T:0.23
Consensus pattern (59 bp):
AATGAAAAGGGATAACTTCGACTATCGAATATGAAAAGGGATGGTGACAACCATCAATT
Found at i:32636791 original size:50 final size:50
Alignment explanation
Indices: 32636658--32636802 Score: 166
Period size: 50 Copynumber: 2.9 Consensus size: 50
32636648 CCGAATCACC
* * * *
32636658 ATTTGTGGACAAGCCACCACTGATTTGAAGATAAACTGCCA-TTGATAACA
1 ATTTGTGGACAAGCCACCACTGATATGCAGATATACTGCCACAT-ATAACA
* * * *
32636708 CTTTGCGGACAAGCCACAACTTATATGCAGATATACTGCCACATATAACA
1 ATTTGTGGACAAGCCACCACTGATATGCAGATATACTGCCACATATAACA
* * * *
32636758 ATTTGTGGTCTAGCCACCACTGATATGCAGATATATTGCTACATA
1 ATTTGTGGACAAGCCACCACTGATATGCAGATATACTGCCACATA
32636803 CTTCCACCTT
Statistics
Matches: 78, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
50 77 0.99
51 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.28
Consensus pattern (50 bp):
ATTTGTGGACAAGCCACCACTGATATGCAGATATACTGCCACATATAACA
Found at i:32638237 original size:92 final size:91
Alignment explanation
Indices: 32638110--32638319 Score: 312
Period size: 92 Copynumber: 2.3 Consensus size: 91
32638100 TTCAACAATA
* * *
32638110 TATATTCATATACGAATCAAATTTGACAACTTATCTTTATATACAAATCAATTTCGATAATGTAT
1 TATAATCATATACGAATC-AATTCGACAACTTATCTTCATATACAAATCAATTTCGATAA-GTAT
*
32638175 AACCATATGCAAATAAATTTCAGCAAAG
64 AACCATATACAAATAAATTTCAGCAAAG
*
32638203 TATAATCATATACGAATCAATTCGGCAACTTATCTTCATATACAAATCAATTTCGATAAGTATAA
1 TATAATCATATACGAATCAATTCGACAACTTATCTTCATATACAAATCAATTTCGATAAGTATAA
*
32638268 CCATATACAAATAAATTTCAGCAATG
66 CCATATACAAATAAATTTCAGCAAAG
* * *
32638294 TAATACTTATATACGAATTAATTCGA
1 T-ATAATCATATACGAATCAATTCGA
32638320 AAATGTATAA
Statistics
Matches: 106, Mismatches: 10, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
91 31 0.29
92 58 0.55
93 17 0.16
ACGTcount: A:0.43, C:0.16, G:0.08, T:0.34
Consensus pattern (91 bp):
TATAATCATATACGAATCAATTCGACAACTTATCTTCATATACAAATCAATTTCGATAAGTATAA
CCATATACAAATAAATTTCAGCAAAG
Found at i:32638273 original size:30 final size:30
Alignment explanation
Indices: 32638148--32638286 Score: 131
Period size: 31 Copynumber: 4.6 Consensus size: 30
32638138 ACTTATCTTT
32638148 ATATACAAATCAATTTCGATAATGTATAACC
1 ATATACAAATCAATTTCGATAA-GTATAACC
* * *
32638179 ATATGCAAATAAATTTCAGCA-AAGTATAATC
1 ATATACAAATCAATTTC-G-ATAAGTATAACC
* ** * *
32638210 ATATACGAATCAA-TTCGGCAACT-TATCTTC
1 ATATACAAATCAATTTCGATAAGTATAAC--C
32638240 ATATACAAATCAATTTCGATAAGTATAACC
1 ATATACAAATCAATTTCGATAAGTATAACC
*
32638270 ATATACAAATAAATTTC
1 ATATACAAATCAATTTC
32638287 AGCAATGTAA
Statistics
Matches: 85, Mismatches: 16, Indels: 15
0.73 0.14 0.13
Matches are distributed among these distances:
28 2 0.02
29 4 0.05
30 33 0.39
31 39 0.46
32 6 0.07
33 1 0.01
ACGTcount: A:0.45, C:0.17, G:0.07, T:0.32
Consensus pattern (30 bp):
ATATACAAATCAATTTCGATAAGTATAACC
Found at i:32642731 original size:20 final size:20
Alignment explanation
Indices: 32642706--32642745 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
32642696 TTAGAAACTA
32642706 AATTGAGCTCGAA-TGAGCTG
1 AATTGAGCTC-AAGTGAGCTG
32642726 AATTGAGCTCAAGTGAGCTG
1 AATTGAGCTCAAGTGAGCTG
32642746 GTTGGAGCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.11
20 17 0.89
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.25
Consensus pattern (20 bp):
AATTGAGCTCAAGTGAGCTG
Found at i:32642787 original size:20 final size:19
Alignment explanation
Indices: 32642749--32642787 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
32642739 TGAGCTGGTT
*
32642749 GGAGCTGAAACGAGGTAAA
1 GGAGCTGAAACGAGCTAAA
*
32642768 GGAGCTGGAATCGAGCTAAA
1 GGAGCT-GAAACGAGCTAAA
32642788 ATCAGCTTGC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.38, C:0.13, G:0.36, T:0.13
Consensus pattern (19 bp):
GGAGCTGAAACGAGCTAAA
Found at i:32644587 original size:23 final size:22
Alignment explanation
Indices: 32644534--32644592 Score: 57
Period size: 22 Copynumber: 2.6 Consensus size: 22
32644524 TAAATATTAG
*
32644534 TTTATTAATATTTTAATTTGAT
1 TTTATTAATATATTAATTTGAT
* *
32644556 TTTTTTAATGATATT-ATTTTAT
1 TTTATTAAT-ATATTAATTTGAT
*
32644578 TGTTATTAATTTATT
1 T-TTATTAATATATT
32644593 TAGTATATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
22 19 0.63
23 11 0.37
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (22 bp):
TTTATTAATATATTAATTTGAT
Found at i:32646354 original size:10 final size:10
Alignment explanation
Indices: 32646326--32646373 Score: 51
Period size: 10 Copynumber: 4.8 Consensus size: 10
32646316 TGAATGCTTG
*
32646326 ATGGAATGAA
1 ATGGAATGGA
**
32646336 ATGCTATGGA
1 ATGGAATGGA
* *
32646346 ATGAAATGGT
1 ATGGAATGGA
32646356 ATGGAATGGA
1 ATGGAATGGA
32646366 ATGGAATG
1 ATGGAATG
32646374 AAATAAAATA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
10 30 1.00
ACGTcount: A:0.40, C:0.02, G:0.33, T:0.25
Consensus pattern (10 bp):
ATGGAATGGA
Found at i:32646369 original size:15 final size:15
Alignment explanation
Indices: 32646326--32646369 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
32646316 TGAATGCTTG
*
32646326 ATGGAATGAAATGCT
1 ATGGAATGAAATGGT
32646341 ATGGAATGAAATGGT
1 ATGGAATGAAATGGT
*
32646356 ATGGAATGGAATGG
1 ATGGAATGAAATGG
32646370 AATGAAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.39, C:0.02, G:0.34, T:0.25
Consensus pattern (15 bp):
ATGGAATGAAATGGT
Found at i:32647264 original size:51 final size:50
Alignment explanation
Indices: 32647127--32647264 Score: 154
Period size: 50 Copynumber: 2.8 Consensus size: 50
32647117 AAAGTGAAAG
* *
32647127 TGAT-GATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACTAGAA
1 TGATCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTACCAGAA
* * * * * *
32647176 TGATGGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACC-GGA
1 TGATCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTACCAGAA
* *
32647225 TAGCTTCGATCACGTGTGTAGTACTATGTGCAAGCTACTA
1 T-G-ATCGATCACGTGTGTAGTACTATGTGCAGGCTACTA
32647265 GGTGTATCGG
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
49 7 0.10
50 36 0.49
51 30 0.41
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (50 bp):
TGATCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTACCAGAA
Found at i:32647294 original size:51 final size:49
Alignment explanation
Indices: 32647133--32647315 Score: 161
Period size: 51 Copynumber: 3.6 Consensus size: 49
32647123 AAAGTGATGA
* * * *
32647133 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACTAGAATGATGGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTA-TCGGATGATCGG
* * * * * *
32647183 TCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAT-G-ATCGG
* * *
32647234 TCACGTGTGTAGTACTATGTGCAAGCTACTAGGTGTATCGGATGGAAAT-GG
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAT-G--ATCGG
** *
32647285 TCACATGTGTAGTACTACATGTAGGCTACTA
1 TCACATGTGTAGTACTATGTGCAGGCTACTA
32647316 TGTGAACCGG
Statistics
Matches: 105, Mismatches: 25, Indels: 5
0.78 0.19 0.04
Matches are distributed among these distances:
49 3 0.03
50 34 0.32
51 67 0.64
52 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (49 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGATCGG
Found at i:32647410 original size:33 final size:33
Alignment explanation
Indices: 32647373--32647525 Score: 138
Period size: 33 Copynumber: 4.5 Consensus size: 33
32647363 TCCCCCAAGG
32647373 GGTTGCTAAGTGCTGATTTCCCGATTCATTGGT
1 GGTTGCTAAGTGCTGATTTCCCGATTCATTGGT
* * *
32647406 GGTTGCTAAGTGCTGATTCCACCGTAATTTAAATTTGAAGGG
1 GGTTGCTAAGTGCTGATTTC-CCG--A-TT-CA-TT---GGT
* *
32647448 GGTTGCTAAGTGCTGA-TTCCC---CCA-AGG-
1 GGTTGCTAAGTGCTGATTTCCCGATTCATTGGT
32647475 GGTTGCTAAGTGCTGATTTCCCGATTCATTGGT
1 GGTTGCTAAGTGCTGATTTCCCGATTCATTGGT
32647508 GGTTGCTAAGTGCTGATT
1 GGTTGCTAAGTGCTGATT
32647526 CCACCGTAAT
Statistics
Matches: 96, Mismatches: 9, Indels: 30
0.71 0.07 0.22
Matches are distributed among these distances:
27 16 0.17
28 7 0.07
31 2 0.02
32 2 0.02
33 38 0.40
34 3 0.03
36 1 0.01
37 2 0.02
38 1 0.01
39 2 0.02
40 2 0.02
41 2 0.02
42 18 0.19
ACGTcount: A:0.19, C:0.18, G:0.28, T:0.35
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTTCCCGATTCATTGGT
Found at i:32647517 original size:102 final size:102
Alignment explanation
Indices: 32647341--32647633 Score: 514
Period size: 102 Copynumber: 2.9 Consensus size: 102
32647331 ATTGAATATA
32647341 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTTCCCGATTCATTGGT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTTCCCGATTCATTGGT
*
32647406 GGTTGCTAAGTGCTGATTCCACCGTAATTTAAATTTG
66 GGTTGCTAAGTGCTGATTCCACCGTAATTTAAATGTG
32647443 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTTCCCGATTCATTGGT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTTCCCGATTCATTGGT
32647508 GGTTGCTAAGTGCTGATTCCACCGTAATTTAAATGTG
66 GGTTGCTAAGTGCTGATTCCACCGTAATTTAAATGTG
* * * * *
32647545 AAGGGGGTTGCTAAGTGCTGATTCCCCCGAGGGGTTGCTAAGTGTTGATTCCCCGAATCACTGGT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTTCCCGATTCATTGGT
* *
32647610 GGTTGCTAAGTGTTGAATCCACCG
66 GGTTGCTAAGTGCTGATTCCACCG
32647634 ATAACGGATG
Statistics
Matches: 183, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
102 183 1.00
ACGTcount: A:0.20, C:0.19, G:0.29, T:0.31
Consensus pattern (102 bp):
AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTTCCCGATTCATTGGT
GGTTGCTAAGTGCTGATTCCACCGTAATTTAAATGTG
Found at i:32650070 original size:48 final size:47
Alignment explanation
Indices: 32649992--32650082 Score: 128
Period size: 48 Copynumber: 1.9 Consensus size: 47
32649982 TTATCTATGA
* * * *
32649992 TTATATGGTCGTTATTGGCAATTATGTGGTGGTTTGTCCACAATGTG
1 TTATATGGTCGTTATCGACAATAATGTGGTGGCTTGTCCACAATGTG
*
32650039 TTATGTGGTCGTTTATCGACAATAATGTGGTGGCTTGTCCACAA
1 TTATATGGTCG-TTATCGACAATAATGTGGTGGCTTGTCCACAA
32650083 ATGGTGTGTT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
47 10 0.26
48 28 0.74
ACGTcount: A:0.21, C:0.13, G:0.26, T:0.40
Consensus pattern (47 bp):
TTATATGGTCGTTATCGACAATAATGTGGTGGCTTGTCCACAATGTG
Found at i:32657057 original size:26 final size:26
Alignment explanation
Indices: 32656977--32657059 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
32656967 GATGAACACG
**
32656977 TGTGTAGTACTGTGTGAAGGCTACTA
1 TGTGTAGTACTAAGTGAAGGCTACTA
* * *
32657003 CGTGTA-T-CGATAAAT-AATGGCCAC-A
1 TGTGTAGTAC--TAAGTGAA-GGCTACTA
32657028 TGTGTAGTACTAAGTGAAGGCTACTA
1 TGTGTAGTACTAAGTGAAGGCTACTA
32657054 TGTGTA
1 TGTGTA
32657060 NNNNNNNNNN
Statistics
Matches: 42, Mismatches: 8, Indels: 14
0.66 0.12 0.22
Matches are distributed among these distances:
24 1 0.02
25 18 0.43
26 22 0.52
27 1 0.02
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (26 bp):
TGTGTAGTACTAAGTGAAGGCTACTA
Found at i:32662574 original size:24 final size:24
Alignment explanation
Indices: 32662547--32662599 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
32662537 GGTCATTTTG
32662547 GTGGCTAATGTAATCTTTCATGAT
1 GTGGCTAATGTAATCTTTCATGAT
32662571 GTGGCTAATGTAATCTTTCATGAT
1 GTGGCTAATGTAATCTTTCATGAT
*
32662595 TTGGC
1 GTGGC
32662600 CATAACGTCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.23, C:0.13, G:0.23, T:0.42
Consensus pattern (24 bp):
GTGGCTAATGTAATCTTTCATGAT
Found at i:32672309 original size:40 final size:40
Alignment explanation
Indices: 32672236--32672312 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
32672226 ATACTAACAA
*
32672236 TTTATTTGCATTACTAGTGACTTGTCCACAATACTGGTAG
1 TTTATTTGCATTACTAGTGACTTGCCCACAATACTGGTAG
* * *
32672276 TTTATTTGCATTATTGGT-AGCTTGCCCATAATACTGG
1 TTTATTTGCATTACTAGTGA-CTTGCCCACAATACTGG
32672313 CAACTTGATT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.03
40 31 0.97
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.42
Consensus pattern (40 bp):
TTTATTTGCATTACTAGTGACTTGCCCACAATACTGGTAG
Found at i:32674973 original size:27 final size:27
Alignment explanation
Indices: 32674943--32675001 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
32674933 TGGCATCATA
* *
32674943 GGTAGCCCACCGGGACACTAAACACGG
1 GGTAGCCCACCGAGACAATAAACACGG
* * *
32674970 GGTAGTCTACCGAGATAATAAACACGG
1 GGTAGCCCACCGAGACAATAAACACGG
32674997 GGTAG
1 GGTAG
32675002 ATCGCTAGGA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.32, C:0.24, G:0.31, T:0.14
Consensus pattern (27 bp):
GGTAGCCCACCGAGACAATAAACACGG
Found at i:32678110 original size:18 final size:18
Alignment explanation
Indices: 32678087--32678121 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32678077 ATCCAATTAA
32678087 CATAGAGGTAGATGTAGT
1 CATAGAGGTAGATGTAGT
* *
32678105 CATAGATGTGGATGTAG
1 CATAGAGGTAGATGTAG
32678122 AAGTAGATCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.06, G:0.34, T:0.29
Consensus pattern (18 bp):
CATAGAGGTAGATGTAGT
Found at i:32680888 original size:26 final size:26
Alignment explanation
Indices: 32680839--32680893 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
32680829 CTTGTAAAAG
* *
32680839 AAACTCAAGAGAAATTCTTAAAAGGA
1 AAACTCAAGAGAAATTATTAAAAGCA
*
32680865 AAACTCAAAGAGAATTTATT-AAAGCA
1 AAACTC-AAGAGAAATTATTAAAAGCA
32680891 AAA
1 AAA
32680894 GAGAAGTTGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.56, C:0.11, G:0.13, T:0.20
Consensus pattern (26 bp):
AAACTCAAGAGAAATTATTAAAAGCA
Found at i:32686412 original size:28 final size:28
Alignment explanation
Indices: 32686372--32686439 Score: 118
Period size: 28 Copynumber: 2.4 Consensus size: 28
32686362 GATTTTCTAG
*
32686372 AGCTCATGTAGCTTACATTCCAACCCAC
1 AGCTCGTGTAGCTTACATTCCAACCCAC
*
32686400 AGCTCGTGTAGCTTACATTCCAACCTAC
1 AGCTCGTGTAGCTTACATTCCAACCCAC
32686428 AGCTCGTGTAGC
1 AGCTCGTGTAGC
32686440 AGGCCCATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.26
Consensus pattern (28 bp):
AGCTCGTGTAGCTTACATTCCAACCCAC
Found at i:32687393 original size:127 final size:126
Alignment explanation
Indices: 32687168--32687423 Score: 476
Period size: 127 Copynumber: 2.0 Consensus size: 126
32687158 AAGGGCCCAA
*
32687168 ATTATTATTATCATCACTACTACTACTATTTTTAAATATTATTATCATTTTTTACAAATAAACAA
1 ATTATTATTATCATCACTACTACTACTATTATTAAATATTATTATCATTTTTTACAAATAAACAA
32687233 GATTAAAAAACAACATATATACATGAAATGAAATGAAAGAAAAAAAAAGGAAGGTTTTTCAT
66 GATTAAAAAACAACATATATACATGAAATGAAATGAAAG-AAAAAAAAGGAAGGTTTTTCAT
32687295 ATTATTATTATCATCACTACTACTACTATTATTAAATATTATTATCATTTTTTACAAATAAACAA
1 ATTATTATTATCATCACTACTACTACTATTATTAAATATTATTATCATTTTTTACAAATAAACAA
* *
32687360 GATTAAAAAACAATATATATACATGAAATGAAATGAAAGAAAAAAAAGGGAGGTTTTTCAT
66 GATTAAAAAACAACATATATACATGAAATGAAATGAAAGAAAAAAAAGGAAGGTTTTTCAT
32687421 ATT
1 ATT
32687424 TTGTTCTTAA
Statistics
Matches: 126, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
126 24 0.19
127 102 0.81
ACGTcount: A:0.48, C:0.10, G:0.07, T:0.35
Consensus pattern (126 bp):
ATTATTATTATCATCACTACTACTACTATTATTAAATATTATTATCATTTTTTACAAATAAACAA
GATTAAAAAACAACATATATACATGAAATGAAATGAAAGAAAAAAAAGGAAGGTTTTTCAT
Found at i:32687451 original size:3 final size:3
Alignment explanation
Indices: 32687443--32687468 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
32687433 AAAAAGGTAA
32687443 AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AA
32687469 ACATTCTAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:32687872 original size:23 final size:22
Alignment explanation
Indices: 32687846--32687894 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
32687836 AAAAATATGT
* **
32687846 TTTTTAATCATTTTAAAGGAAAA
1 TTTTAAAT-ATTTTAAAACAAAA
*
32687869 TTTTAAATTTTTTAAAACAAAA
1 TTTTAAATATTTTAAAACAAAA
32687891 TTTT
1 TTTT
32687895 GATCTCTTTC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 15 0.68
23 7 0.32
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49
Consensus pattern (22 bp):
TTTTAAATATTTTAAAACAAAA
Found at i:32687905 original size:142 final size:141
Alignment explanation
Indices: 32687678--32687971 Score: 425
Period size: 142 Copynumber: 2.1 Consensus size: 141
32687668 AAAAAAAGAT
*
32687678 AAAGTTTAGATTTCTAAAATAAAATTTTTTTTAGTCATATTAAAGGAAAAGTTTAAATTTTTAAA
1 AAAGTTTAGATTTCTAAAATAAAATTTTTTTTAATCATATTAAAGGAAAAGTTTAAATTTTTAAA
* * * * *
32687743 ATAAAGTTTTGATCTTTTTCAACTATTTTGAAATGAAGTTTTGATTTTTAAGAAAAATAGTGA-T
66 ACAAAATTTTGATCTCTTTCAACTATTTCGAAATAAAGTTTTGATTTTTAAGAAAAATAGTGATT
32687807 -TTTTAAAAAA
131 CTTTTAAAAAA
* *
32687817 AAAGTTTAGATTT-TAAAATAAAAATATGTTTTTTAATCATTTTAAAGGAAAATTTTAAATTTTT
1 AAAGTTTAGATTTCTAAAAT-AAAAT-T-TTTTTTAATCATATTAAAGGAAAAGTTTAAA-TTTT
*
32687881 TAAAACAAAATTTTGATCTCTTTCAACTATTTCGAAATAAAGTTTTGATTTTTAAGACAAATAGT
62 TAAAACAAAATTTTGATCTCTTTCAACTATTTCGAAATAAAGTTTTGATTTTTAAGAAAAATAGT
*
32687946 GATTCTTTTAAAAGA
127 GATTCTTTTAAAAAA
*
32687961 AAACTTT-GATT
1 AAAGTTTAGATT
32687972 CTACCAAAAA
Statistics
Matches: 138, Mismatches: 11, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
138 6 0.04
139 18 0.13
140 1 0.01
141 28 0.20
142 65 0.47
143 5 0.04
144 15 0.11
ACGTcount: A:0.41, C:0.05, G:0.10, T:0.44
Consensus pattern (141 bp):
AAAGTTTAGATTTCTAAAATAAAATTTTTTTTAATCATATTAAAGGAAAAGTTTAAATTTTTAAA
ACAAAATTTTGATCTCTTTCAACTATTTCGAAATAAAGTTTTGATTTTTAAGAAAAATAGTGATT
CTTTTAAAAAA
Found at i:32690275 original size:17 final size:19
Alignment explanation
Indices: 32690235--32690277 Score: 56
Period size: 16 Copynumber: 2.4 Consensus size: 19
32690225 TTAATTTCAC
*
32690235 ATTTTTTTCATTTGACTTT
1 ATTTTTTTCATTTGAATTT
32690254 A-TTTTTT-A-TTGAATTT
1 ATTTTTTTCATTTGAATTT
32690270 ATTTTTTT
1 ATTTTTTT
32690278 TGTGTCTGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 8 0.36
17 7 0.32
18 6 0.27
19 1 0.05
ACGTcount: A:0.19, C:0.05, G:0.05, T:0.72
Consensus pattern (19 bp):
ATTTTTTTCATTTGAATTT
Found at i:32692914 original size:27 final size:27
Alignment explanation
Indices: 32692885--32693270 Score: 425
Period size: 27 Copynumber: 14.4 Consensus size: 27
32692875 GGTATAACAA
* *
32692885 TCATTTTATCCTATGGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGG
* * * * *
32692912 TCATGTTACCTTATGAGGATATTTCTG
1 TCATTTTACCCTATGGGGGTATTTCGG
*
32692939 TCATTTTACCCTAT-GGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGG
* *
32692965 TCATTTTACCCTATGGAGGTATTTCAG
1 TCATTTTACCCTATGGGGGTATTTCGG
* ** * *
32692992 TTATTTTACCCTATAAGGGTTTTTTGG
1 TCATTTTACCCTATGGGGGTATTTCGG
* *
32693019 TCATTTTACCCTATGAGGGTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCGG
* *
32693046 TCATTTTACCCTATAGGGGTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCGG
* * *
32693073 T-AATTTACCCTATGGGGTTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCGG
* * *
32693099 TCATTATACCCTATGGCGGTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCGG
** *
32693126 TCATTTTACCCTATTAGGGTATTTCAG
1 TCATTTTACCCTATGGGGGTATTTCGG
*
32693153 TCATTTTACCCTATGGGGGTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCGG
**
32693180 TCATTTTACTGTATGGGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGG
* * *
32693207 TCATTTTACCTTATGGAGGTATTTCTG
1 TCATTTTACCCTATGGGGGTATTTCGG
* * *
32693234 TCATTTTATCCTATGGGGGTTTTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGG
32693261 TCATTTTACC
1 TCATTTTACC
32693271 TATTTTTGGG
Statistics
Matches: 298, Mismatches: 59, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
26 45 0.15
27 253 0.85
ACGTcount: A:0.19, C:0.16, G:0.21, T:0.45
Consensus pattern (27 bp):
TCATTTTACCCTATGGGGGTATTTCGG
Found at i:32694002 original size:24 final size:25
Alignment explanation
Indices: 32693958--32694004 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
32693948 CCCAAATCTC
*
32693958 AATATTCTCTCCTCAAATCTCTCCA
1 AATATTCTCTCATCAAATCTCTCCA
*
32693983 AATATTC-CTCATCAATTCTCTC
1 AATATTCTCTCATCAAATCTCTC
32694005 TATGACCAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.28, C:0.34, G:0.00, T:0.38
Consensus pattern (25 bp):
AATATTCTCTCATCAAATCTCTCCA
Found at i:32695045 original size:3 final size:3
Alignment explanation
Indices: 32695037--32695063 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
32695027 AAGCTCATAG
32695037 GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA
32695064 CAACGAGTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:32695248 original size:12 final size:12
Alignment explanation
Indices: 32695233--32695273 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
32695223 TTTCAATCAA
*
32695233 TCATTCATTCAT
1 TCATTCATTCGT
*
32695245 TCATCCATTCGT
1 TCATTCATTCGT
*
32695257 TCACTCATTCGT
1 TCATTCATTCGT
32695269 TCATT
1 TCATT
32695274 TGTTTATTCA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.20, C:0.29, G:0.05, T:0.46
Consensus pattern (12 bp):
TCATTCATTCGT
Found at i:32696774 original size:28 final size:28
Alignment explanation
Indices: 32696742--32696798 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
32696732 TTAAGAACTG
*
32696742 CTTAGCGTTAAAATACAAGGTACAAGAT
1 CTTAGCGTTAAAATACAAGGTAAAAGAT
32696770 CTTAGCGTTAAAATACAAGGTAAAAGAT
1 CTTAGCGTTAAAATACAAGGTAAAAGAT
32696798 C
1 C
32696799 ATACCATCGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.44, C:0.14, G:0.18, T:0.25
Consensus pattern (28 bp):
CTTAGCGTTAAAATACAAGGTAAAAGAT
Found at i:32699866 original size:14 final size:15
Alignment explanation
Indices: 32699837--32699868 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
32699827 AAAAACATCA
32699837 TAATTTTATCTATTT
1 TAATTTTATCTATTT
32699852 TAATTTTAT-TATTT
1 TAATTTTATCTATTT
32699866 TAA
1 TAA
32699869 CTATAACCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (15 bp):
TAATTTTATCTATTT
Found at i:32703542 original size:34 final size:34
Alignment explanation
Indices: 32703499--32703566 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
32703489 AAAGAAGAAA
*
32703499 ACCAGTTAGCATATGCATTAGCTACTCTAGCCAC
1 ACCAGTTAGCAGATGCATTAGCTACTCTAGCCAC
32703533 ACCAGTTAGCAGATGCATTAGCTACTCTAGCCAC
1 ACCAGTTAGCAGATGCATTAGCTACTCTAGCCAC
32703567 CATGTTCAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (34 bp):
ACCAGTTAGCAGATGCATTAGCTACTCTAGCCAC
Found at i:32705384 original size:42 final size:42
Alignment explanation
Indices: 32705324--32705836 Score: 627
Period size: 42 Copynumber: 12.3 Consensus size: 42
32705314 AATGAAATTA
* * * *
32705324 TTCATTCCATTTAGAGGCCCAGGTGTGTATGTCCATTCACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* *
32705366 TTCATTGCATTTAAAGGCCCAAGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * * *
32705408 TTCATTACATTTAGAGGCCTAAGTGT-G-GGTCCATTCACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * * *
32705448 TTTATTACATTTAAAGGACCAGGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* *
32705490 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCTATTTTCTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * *
32705532 TTCGTTGAATTTAGAGGCCCAGGTGTAGAGGTCCATTTACTAT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACT-T
* *
32705575 TT-ATTGCATTTAAAGGCCCAGGTGTGGAGGCCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * * *
32705616 TTCCTTGCATTTAGAGGCCCAAGTGTGGAGGCCCATTCACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * *
32705658 TTCATTGCATTTAGAGGCCTAGGTGTGAAGGTTCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * * * **
32705700 TTTATTGTATTTAGAGGCTCAAGTGTAAAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * * * *
32705742 TTCATTGCATCTAGAGGCCTAGGTGTGGTGGTTCATTCACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* *
32705784 TTCATTGCATTTAAAGGCCCAGGTGTGAAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
32705826 TTCATTGCATT
1 TTCATTGCATT
32705837 GTATATTAAG
Statistics
Matches: 399, Mismatches: 68, Indels: 8
0.84 0.14 0.02
Matches are distributed among these distances:
40 33 0.08
41 5 0.01
42 358 0.90
43 3 0.01
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.38
Consensus pattern (42 bp):
TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
Found at i:32706868 original size:22 final size:22
Alignment explanation
Indices: 32706813--32706869 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
32706803 AAAATATGTT
* * **
32706813 TTTTAGTCATTTTAAAGGAAAA
1 TTTTAATCTTTTTAAAACAAAA
32706835 TTTTAAAT-TTTTTAAAACAAAA
1 TTTT-AATCTTTTTAAAACAAAA
32706857 TTTTAATCTTTTT
1 TTTTAATCTTTTT
32706870 CAACTATTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
21 3 0.10
22 24 0.83
23 2 0.07
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.51
Consensus pattern (22 bp):
TTTTAATCTTTTTAAAACAAAA
Found at i:32706885 original size:151 final size:149
Alignment explanation
Indices: 32706620--32706918 Score: 476
Period size: 151 Copynumber: 2.0 Consensus size: 149
32706610 ATTTTTAAAA
* *
32706620 AAAATAAAGATAAAGTTTAGGTTTTTAAAATAAAAATATGTTTTTTAGTCATATTAAAGGAAAAG
1 AAAATAAAGAAAAAGTTTAGATTTTTAAAATAAAAATATGTTTTTTAGTCATATTAAAGGAAAAG
* * *
32706685 TTTAAATTTTTAAAATAAAGTTTTAATCTTTTTCAACTATTTCGAAAATAAAGTTTTGATTTTCA
66 TTTAAATTTTTAAAACAAAATTTTAATCTTTTTCAACTATTTCGAAAATAAAATTTTGATTTTCA
32706750 AGAAAAAATAGTGATTTTTTTT
131 AG-AAAAATAGT--TTTTTTTT
* *
32706772 AAAA-AAAGAAAAAGTTTAGATTTTTAAAATAAAAATATGTTTTTTAGTCATTTTAAAGGAAAAT
1 AAAATAAAGAAAAAGTTTAGATTTTTAAAATAAAAATATGTTTTTTAGTCATATTAAAGGAAAAG
*
32706836 TTTAAATTTTTTAAAACAAAATTTTAATCTTTTTCAACTATTTCG-AAATAAAATTTTGATTTTT
66 TTTAAA-TTTTTAAAACAAAATTTTAATCTTTTTCAACTATTTCGAAAATAAAATTTTGATTTTC
32706900 AAGAAAAATAGTTTTTTTT
130 AAGAAAAATAGTTTTTTTT
32706919 AAGAAAACTT
Statistics
Matches: 138, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
148 7 0.05
150 9 0.07
151 82 0.59
152 40 0.29
ACGTcount: A:0.43, C:0.04, G:0.09, T:0.43
Consensus pattern (149 bp):
AAAATAAAGAAAAAGTTTAGATTTTTAAAATAAAAATATGTTTTTTAGTCATATTAAAGGAAAAG
TTTAAATTTTTAAAACAAAATTTTAATCTTTTTCAACTATTTCGAAAATAAAATTTTGATTTTCA
AGAAAAATAGTTTTTTTTT
Found at i:32706907 original size:19 final size:18
Alignment explanation
Indices: 32706885--32706935 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 18
32706875 ATTTCGAAAT
32706885 AAAATTTTGATTTTTAAG
1 AAAATTTTGATTTTTAAG
32706903 AAAAATAGTTT--TTTTTAAG
1 -AAAAT--TTTGATTTTTAAG
*
32706922 AAAACTTTGATTTT
1 AAAATTTTGATTTT
32706936 GCAAAAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 9
0.73 0.03 0.24
Matches are distributed among these distances:
16 3 0.11
18 8 0.30
19 13 0.48
21 3 0.11
ACGTcount: A:0.39, C:0.02, G:0.10, T:0.49
Consensus pattern (18 bp):
AAAATTTTGATTTTTAAG
Found at i:32707285 original size:21 final size:21
Alignment explanation
Indices: 32707261--32707302 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
32707251 ATTATTCACA
32707261 CTTATATAATTTTTATTTATT
1 CTTATATAATTTTTATTTATT
* **
32707282 CTTATTTTGTTTTTATTTATT
1 CTTATATAATTTTTATTTATT
32707303 TTCATGTCCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.05, G:0.02, T:0.71
Consensus pattern (21 bp):
CTTATATAATTTTTATTTATT
Found at i:32718463 original size:30 final size:30
Alignment explanation
Indices: 32718427--32718488 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
32718417 TATATAAAAG
32718427 TATGAAAAGATAAAAATGTCATAAAAATAA
1 TATGAAAAGATAAAAATGTCATAAAAATAA
32718457 TATGAAAAGATAAAAATGTCATAAAAATAA
1 TATGAAAAGATAAAAATGTCATAAAAATAA
32718487 TA
1 TA
32718489 ATAGTAATCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.63, C:0.03, G:0.10, T:0.24
Consensus pattern (30 bp):
TATGAAAAGATAAAAATGTCATAAAAATAA
Found at i:32722817 original size:28 final size:28
Alignment explanation
Indices: 32722786--32722872 Score: 83
Period size: 28 Copynumber: 3.1 Consensus size: 28
32722776 ATATTCCCAC
32722786 TTTTAGTTGTCCATGATTATATATTTTA
1 TTTTAGTTGTCCATGATTATATATTTTA
* * **
32722814 TTTTA-TTAT---TTATTACTATATTCCCA
1 TTTTAGTTGTCCATGATTA-TATATT-TTA
32722840 CTTTTAGTTGTCCATGATTATATATTTTA
1 -TTTTAGTTGTCCATGATTATATATTTTA
32722869 TTTT
1 TTTT
32722873 CTTTATGTTT
Statistics
Matches: 44, Mismatches: 8, Indels: 14
0.67 0.12 0.21
Matches are distributed among these distances:
24 5 0.11
25 6 0.14
26 1 0.02
27 8 0.18
28 12 0.27
29 1 0.02
30 6 0.14
31 5 0.11
ACGTcount: A:0.24, C:0.10, G:0.07, T:0.59
Consensus pattern (28 bp):
TTTTAGTTGTCCATGATTATATATTTTA
Found at i:32722845 original size:55 final size:55
Alignment explanation
Indices: 32722764--32722872 Score: 218
Period size: 55 Copynumber: 2.0 Consensus size: 55
32722754 CATTGTTCTC
32722764 TTATTTATTACTATATTCCCACTTTTAGTTGTCCATGATTATATATTTTATTTTA
1 TTATTTATTACTATATTCCCACTTTTAGTTGTCCATGATTATATATTTTATTTTA
32722819 TTATTTATTACTATATTCCCACTTTTAGTTGTCCATGATTATATATTTTATTTT
1 TTATTTATTACTATATTCCCACTTTTAGTTGTCCATGATTATATATTTTATTTT
32722873 CTTTATGTTT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.25, C:0.13, G:0.06, T:0.57
Consensus pattern (55 bp):
TTATTTATTACTATATTCCCACTTTTAGTTGTCCATGATTATATATTTTATTTTA
Found at i:32724502 original size:26 final size:27
Alignment explanation
Indices: 32724464--32724521 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
32724454 AATATTAAAT
* *
32724464 TATTTATATAATTT-TATTATATATTA
1 TATTTTTAAAATTTGTATTATATATTA
* *
32724490 TATTTTTAAAATTTGTATTTTCTATTA
1 TATTTTTAAAATTTGTATTATATATTA
32724517 T-TTTT
1 TATTTT
32724522 AATGATGTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 16 0.59
27 11 0.41
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (27 bp):
TATTTTTAAAATTTGTATTATATATTA
Found at i:32733026 original size:55 final size:55
Alignment explanation
Indices: 32732960--32733066 Score: 178
Period size: 55 Copynumber: 1.9 Consensus size: 55
32732950 GTAACAAACA
* *
32732960 GATTCTTAATGGTGTTGAAAAGTTCGGTTTTAGATCAAATTTATTGAGTTGATTT
1 GATTCTTAATGGTATTGAAAAATTCGGTTTTAGATCAAATTTATTGAGTTGATTT
* *
32733015 GATTCTTAATGGTATTGAAAAATTCGGTTTTCGATCAGATTTATTGAGTTGA
1 GATTCTTAATGGTATTGAAAAATTCGGTTTTAGATCAAATTTATTGAGTTGA
32733067 GTTAGTAAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 48 1.00
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.44
Consensus pattern (55 bp):
GATTCTTAATGGTATTGAAAAATTCGGTTTTAGATCAAATTTATTGAGTTGATTT
Found at i:32741308 original size:27 final size:26
Alignment explanation
Indices: 32741237--32741310 Score: 78
Period size: 27 Copynumber: 2.8 Consensus size: 26
32741227 GTAAATGGTA
* * * *
32741237 ATTTTACCCCTAGGGGTATTTTGGTC
1 ATTTTACCCTTTGGGGTATTTCGATC
32741263 ATTTTA-CCTTTCGGAGGTATTTCGATC
1 ATTTTACCCTTT-GG-GGTATTTCGATC
32741290 ATTTTACCCTTTGAGGGTATT
1 ATTTTACCCTTTG-GGGTATT
32741311 ACGGTAAATT
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 3 0.08
26 8 0.20
27 23 0.57
28 6 0.15
ACGTcount: A:0.18, C:0.18, G:0.20, T:0.45
Consensus pattern (26 bp):
ATTTTACCCTTTGGGGTATTTCGATC
Found at i:32741347 original size:53 final size:54
Alignment explanation
Indices: 32741232--32741363 Score: 126
Period size: 53 Copynumber: 2.5 Consensus size: 54
32741222 TAGGGGTAAA
* ** * * *
32741232 TGGTAATTTTACCCCTAG-GGGTATTTTGGTCATTTTACCTTTCGGAGGTATTT
1 TGGTAATTTTACCCTTAGAGGGTATTACGGTAAATTTACCTGTCGGAGGTATTT
* * * * *
32741285 CGATCATTTTACCCTTTGAGGGTATTACGGTAAATTTACCTGTC-GAGGTGTTT
1 TGGTAATTTTACCCTTAGAGGGTATTACGGTAAATTTACCTGTCGGAGGTATTT
*
32741338 TGGTAATTTTATCCTTCA-AGGGTATT
1 TGGTAATTTTACCCTT-AGAGGGTATT
32741364 TCGATAATTC
Statistics
Matches: 61, Mismatches: 16, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
53 41 0.67
54 20 0.33
ACGTcount: A:0.20, C:0.15, G:0.22, T:0.43
Consensus pattern (54 bp):
TGGTAATTTTACCCTTAGAGGGTATTACGGTAAATTTACCTGTCGGAGGTATTT
Found at i:32741371 original size:27 final size:26
Alignment explanation
Indices: 32741263--32741404 Score: 87
Period size: 27 Copynumber: 5.3 Consensus size: 26
32741253 TATTTTGGTC
*
32741263 ATTTTACCTTTCG-GAGGTATTTCGATC
1 ATTTTACC-TTCGAG-GGTATTTCGATA
* * *
32741290 ATTTTACCCTTTGAGGGTATTACGGTA
1 ATTTTA-CCTTCGAGGGTATTTCGATA
* *
32741317 AATTTACCTGTCGAGGTGT-TTT-GGTA
1 ATTTTACCT-TCGAGG-GTATTTCGATA
*
32741343 ATTTTATCCTTCAAGGGTATTTCGATA
1 ATTTTA-CCTTCGAGGGTATTTCGATA
* * *
32741370 ATTCTACTCTTAG-GGTGTATTTCGGTA
1 ATTTTAC-CTTCGAGG-GTATTTCGATA
32741397 A-TTTACCT
1 ATTTTACCT
32741405 ACGAATCGCA
Statistics
Matches: 91, Mismatches: 15, Indels: 20
0.72 0.12 0.16
Matches are distributed among these distances:
25 4 0.04
26 27 0.30
27 55 0.60
28 5 0.05
ACGTcount: A:0.21, C:0.15, G:0.20, T:0.44
Consensus pattern (26 bp):
ATTTTACCTTCGAGGGTATTTCGATA
Found at i:32745726 original size:24 final size:24
Alignment explanation
Indices: 32745699--32745755 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
32745689 GTGGGCATGT
**
32745699 CACTCAATAGTGTTGTGGTC-AAGC
1 CACTCAATAACGTTGTGG-CAAAGC
32745723 CACTCAATAACGTTGTGGCAAAGC
1 CACTCAATAACGTTGTGGCAAAGC
*
32745747 CACTTAATA
1 CACTCAATA
32745756 TTTTAGTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 1 0.03
24 28 0.97
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (24 bp):
CACTCAATAACGTTGTGGCAAAGC
Found at i:32748980 original size:50 final size:50
Alignment explanation
Indices: 32748839--32749030 Score: 260
Period size: 50 Copynumber: 3.8 Consensus size: 50
32748829 ATTTGGGTAA
*
32748839 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * *
32748889 AGAGGTCCCATGAAAG-CAATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * *
32748938 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * *
32748988 AGAACATCCCATGTAAGACCATGTCTGGGACATGACTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
32749031 TGTTATTATC
Statistics
Matches: 122, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
49 43 0.35
50 46 0.38
51 33 0.27
ACGTcount: A:0.27, C:0.22, G:0.31, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:32757327 original size:13 final size:14
Alignment explanation
Indices: 32757305--32757333 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
32757295 ATAATCTCTG
32757305 TTCATAATCATAAA
1 TTCATAATCATAAA
32757319 TTCAT-ATCATAAA
1 TTCATAATCATAAA
32757332 TT
1 TT
32757334 TATACACATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.45, C:0.14, G:0.00, T:0.41
Consensus pattern (14 bp):
TTCATAATCATAAA
Found at i:32760775 original size:23 final size:22
Alignment explanation
Indices: 32760732--32760775 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
32760722 TTCTAAGTCG
32760732 ATATTCAATTCAATTCCACACAT
1 ATATTCAATTCAATT-CACACAT
32760755 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
32760776 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACAT
Found at i:32760889 original size:45 final size:45
Alignment explanation
Indices: 32760821--32760913 Score: 134
Period size: 45 Copynumber: 2.1 Consensus size: 45
32760811 ACAGATACTC
* * *
32760821 GGTGGATTTAGCACATAGAAACCATCTTATTAATCAATGATGTCT
1 GGTGGAATTAGCACATAGAAACCACCTTACTAATCAATGATGTCT
*
32760866 GGTGGAATTAGCACATA-ACAACCACCTTACTAATCAATGATGTTT
1 GGTGGAATTAGCACATAGA-AACCACCTTACTAATCAATGATGTCT
32760911 GGT
1 GGT
32760914 TCACATAGTA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 1 0.02
45 42 0.98
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.31
Consensus pattern (45 bp):
GGTGGAATTAGCACATAGAAACCACCTTACTAATCAATGATGTCT
Found at i:32761086 original size:50 final size:48
Alignment explanation
Indices: 32760909--32761105 Score: 157
Period size: 50 Copynumber: 4.0 Consensus size: 48
32760899 TCAATGATGT
* * * * * * *
32760909 TTGGTTCACATAGTAGTCTGCATATAGTACTATACATTTGACCATTACCA
1 TTGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACC--TATCA
* * *
32760959 TCTGATACACGTAGTAGCCTGCACATAGTACTACACGTGATCGAAACTAT--
1 T-TGGTACACGTAGTAGCCTGCACATAGTACTACACATG-T-G-ACCTATCA
***
32761009 TTGGTACGTATAGTAGCCTGCACATAGTACTACACATGTGACCTATCA
1 TTGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCTATCA
* * *
32761057 TTCCGGTACACGTAGTAGCTTGCACATAGTACTACAAACGTGACC-ATCA
1 TT--GGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCTATCA
32761106 CTTTCAGTTT
Statistics
Matches: 117, Mismatches: 22, Indels: 17
0.75 0.14 0.11
Matches are distributed among these distances:
46 5 0.04
47 1 0.01
48 3 0.03
49 36 0.31
50 37 0.32
51 29 0.25
52 3 0.03
53 1 0.01
54 2 0.02
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.29
Consensus pattern (48 bp):
TTGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCTATCA
Found at i:32764361 original size:50 final size:50
Alignment explanation
Indices: 32764248--32764414 Score: 167
Period size: 50 Copynumber: 3.3 Consensus size: 50
32764238 GATAATAACA
* * ** *
32764248 TGCCAA-AGCCATGTCTCA-AACATGGTCTTACATGGGATGTTCTCATATCGG
1 TGCCAACA-CCATGTCCCAGAA-ATGGTCTTACAGGGGA-CCTCTCATCTCGG
* ** *
32764299 TGCCCATTCCATGTCCCAGAAATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACACCATGTCCCAGAAATGGTCTTACAGGGGACCTCTCATCTCGG
* ** *
32764349 TGCCAACACCATGCCCCAGGCATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACACCATGTCCCAGAAATGGTCTTACAGGGGACCTCTCATCTCGG
*
32764399 TGCCAACGCCATGTCC
1 TGCCAACACCATGTCC
32764415 TAGACATCAA
Statistics
Matches: 96, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
50 66 0.69
51 28 0.29
52 2 0.02
ACGTcount: A:0.21, C:0.32, G:0.22, T:0.25
Consensus pattern (50 bp):
TGCCAACACCATGTCCCAGAAATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:32768889 original size:50 final size:50
Alignment explanation
Indices: 32768774--32769066 Score: 388
Period size: 50 Copynumber: 5.8 Consensus size: 50
32768764 GATAATAACA
* ** * *
32768774 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATTTTCTCATATCGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
** ** * **
32768825 TGCCCTTGCCATGTCTTAGGCATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
32768875 TACCAATGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
32768925 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * * *
32768975 TGCTAATGTCATGTCCCAAACATGGTCGTACATGGGACCTCTCATCTGGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
32769025 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
32769067 TTACCCAAAT
Statistics
Matches: 207, Mismatches: 35, Indels: 1
0.85 0.14 0.00
Matches are distributed among these distances:
50 178 0.86
51 29 0.14
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:32774219 original size:17 final size:17
Alignment explanation
Indices: 32774197--32774239 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
32774187 GAATGGGCCG
*
32774197 TGTGGGCTCAATGGGCT
1 TGTGGGCCCAATGGGCT
32774214 TGTGGGCCCAATGGGCT
1 TGTGGGCCCAATGGGCT
32774231 TGTGGGCCC
1 TGTGGGCCC
32774240 CACACGGATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.09, C:0.23, G:0.42, T:0.26
Consensus pattern (17 bp):
TGTGGGCCCAATGGGCT
Found at i:32774607 original size:27 final size:27
Alignment explanation
Indices: 32774486--32774607 Score: 140
Period size: 27 Copynumber: 4.5 Consensus size: 27
32774476 TATCTAAATG
* *
32774486 AAAATTACCGAAATACCCTCGAAGTGT
1 AAAATTACTGAAATACCCTCGAAGGGT
* * *
32774513 AAAATTACTGAAATACCTTTGAAGGAT
1 AAAATTACTGAAATACCCTCGAAGGGT
32774540 AAAATTACTGGAAA-ACCCTCGAAGGGT
1 AAAATTACT-GAAATACCCTCGAAGGGT
* *
32774567 AAAATTA-TCGAAATACTCTCAAAGGGT
1 AAAATTACT-GAAATACCCTCGAAGGGT
*
32774594 AAAATTACTAAAAT
1 AAAATTACTGAAAT
32774608 GCCCCTATAG
Statistics
Matches: 80, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
26 5 0.06
27 70 0.88
28 5 0.06
ACGTcount: A:0.45, C:0.16, G:0.15, T:0.25
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTCGAAGGGT
Found at i:32774623 original size:27 final size:27
Alignment explanation
Indices: 32774593--32774900 Score: 124
Period size: 27 Copynumber: 11.4 Consensus size: 27
32774583 TCTCAAAGGG
*
32774593 TAAAATTACTAAAATGCCCCTATAGGC
1 TAAAATGACTAAAATGCCCCTATAGGC
* * *
32774620 TAAAATGACTATAATGCCCCTGTAGGG
1 TAAAATGACTAAAATGCCCCTATAGGC
* *** * * *
32774647 TAAAATGGCCGCAACGCCCCTGTAGGG
1 TAAAATGACTAAAATGCCCCTATAGGC
* *** * *
32774674 TAAAATGGCCGTAATGCCCCTGTAGGG
1 TAAAATGACTAAAATGCCCCTATAGGC
* *** ** *
32774701 TAAAATGGCCGTAATGCCCCTGCAGGG
1 TAAAATGACTAAAATGCCCCTATAGGC
* *** * *
32774728 TAAAATAACCGTAATGCCCCTGTAGGG
1 TAAAATGACTAAAATGCCCCTATAGGC
* * * *
32774755 TAAAATGACCATAATGCCCTTATAGGG
1 TAAAATGACTAAAATGCCCCTATAGGC
* *
32774782 TAAAATGATCGT--AATGCCCCTGTAGGG
1 TAAAATGA-C-TAAAATGCCCCTATAGGC
** * *
32774809 TAAAATGACTGTAATGCCCCTGTAGGG
1 TAAAATGACTAAAATGCCCCTATAGGC
*
32774836 TAAAATGAACGT--AATGCCCCTATAGGG
1 TAAAATG-AC-TAAAATGCCCCTATAGGC
* * *
32774863 TAAAATGATCGT--AATGCTCCTGTAGGG
1 TAAAATGA-C-TAAAATGCCCCTATAGGC
32774890 TAAAATGACTA
1 TAAAATGACTA
32774901 TTTTACCACT
Statistics
Matches: 248, Mismatches: 25, Indels: 17
0.86 0.09 0.06
Matches are distributed among these distances:
25 2 0.01
26 3 0.01
27 239 0.96
28 3 0.01
29 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.24
Consensus pattern (27 bp):
TAAAATGACTAAAATGCCCCTATAGGC
Found at i:32774647 original size:54 final size:54
Alignment explanation
Indices: 32774605--32774898 Score: 408
Period size: 54 Copynumber: 5.4 Consensus size: 54
32774595 AAATTACTAA
* * ** * *
32774605 AATGCCCCTATAGGCTAAAATGACTATAATGCCCCTGTAGGGTAAAATGGCCGC
1 AATGCCCCTGTAGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACCGT
* * *
32774659 AACGCCCCTGTAGGGTAAAATGGCCGTAATGCCCCTGTAGGGTAAAATGGCCGT
1 AATGCCCCTGTAGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACCGT
* * *
32774713 AATGCCCCTGCAGGGTAAAATAACCGTAATGCCCCTGTAGGGTAAAATGACCAT
1 AATGCCCCTGTAGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACCGT
* * * *
32774767 AATGCCCTTATAGGGTAAAATGATCGTAATGCCCCTGTAGGGTAAAATGACTGT
1 AATGCCCCTGTAGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACCGT
* * *
32774821 AATGCCCCTGTAGGGTAAAATGAACGTAATGCCCCTATAGGGTAAAATGATCGT
1 AATGCCCCTGTAGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACCGT
*
32774875 AATGCTCCTGTAGGGTAAAATGAC
1 AATGCCCCTGTAGGGTAAAATGAC
32774899 TATTTTACCA
Statistics
Matches: 212, Mismatches: 28, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 212 1.00
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.23
Consensus pattern (54 bp):
AATGCCCCTGTAGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACCGT
Found at i:32774899 original size:81 final size:81
Alignment explanation
Indices: 32774605--32774898 Score: 428
Period size: 81 Copynumber: 3.6 Consensus size: 81
32774595 AAATTACTAA
* * * * *
32774605 AATGCCCCTATAGGCTAAAATGA-CTATAATGCCCCTGTAGGGTAAAATGGCCGCAACGCCCCTG
1 AATGCCCCTATAGGGTAAAATGATC-GTAATGCCCCTGTAGGGTAAAATGACCGTAATGCCCCTG
*
32774669 TAGGGTAAAATGGCCGT
65 TAGGGTAAAATGACCGT
* ** * *
32774686 AATGCCCCTGTAGGGTAAAATGGCCGTAATGCCCCTGCAGGGTAAAATAACCGTAATGCCCCTGT
1 AATGCCCCTATAGGGTAAAATGATCGTAATGCCCCTGTAGGGTAAAATGACCGTAATGCCCCTGT
*
32774751 AGGGTAAAATGACCAT
66 AGGGTAAAATGACCGT
* *
32774767 AATGCCCTTATAGGGTAAAATGATCGTAATGCCCCTGTAGGGTAAAATGACTGTAATGCCCCTGT
1 AATGCCCCTATAGGGTAAAATGATCGTAATGCCCCTGTAGGGTAAAATGACCGTAATGCCCCTGT
*
32774832 AGGGTAAAATGAACGT
66 AGGGTAAAATGACCGT
*
32774848 AATGCCCCTATAGGGTAAAATGATCGTAATGCTCCTGTAGGGTAAAATGAC
1 AATGCCCCTATAGGGTAAAATGATCGTAATGCCCCTGTAGGGTAAAATGAC
32774899 TATTTTACCA
Statistics
Matches: 190, Mismatches: 22, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
81 189 0.99
82 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.23
Consensus pattern (81 bp):
AATGCCCCTATAGGGTAAAATGATCGTAATGCCCCTGTAGGGTAAAATGACCGTAATGCCCCTGT
AGGGTAAAATGACCGT
Found at i:32774947 original size:24 final size:24
Alignment explanation
Indices: 32774917--32774980 Score: 76
Period size: 24 Copynumber: 2.7 Consensus size: 24
32774907 CACTCGGGGT
*
32774917 TAAATGATTAATTT-TCCTATGATG
1 TAAATGATTAATTTGTCCGA-GATG
*
32774941 TAAATGATTGATTTGTCCGAGATG
1 TAAATGATTAATTTGTCCGAGATG
* *
32774965 TAAATGACTGATTTGT
1 TAAATGATTAATTTGT
32774981 TGTGATTGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 32 0.89
25 4 0.11
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (24 bp):
TAAATGATTAATTTGTCCGAGATG
Found at i:32775016 original size:24 final size:24
Alignment explanation
Indices: 32774936--32775048 Score: 129
Period size: 24 Copynumber: 4.8 Consensus size: 24
32774926 AATTTTCCTA
* * *
32774936 TGATGTAAATGATTGATTTGTCCG
1 TGATTTAAATGACTGATTTGTCTG
* *
32774960 AGATGTAAATGACTGATTTGT-TG
1 TGATTTAAATGACTGATTTGTCTG
* *
32774983 TGATTGAAATGACTGATTTGTTTG
1 TGATTTAAATGACTGATTTGTCTG
*
32775007 TGATTTAAATGACTGATTTGTCTA
1 TGATTTAAATGACTGATTTGTCTG
**
32775031 TGATTTGTATGACTGATT
1 TGATTTAAATGACTGATT
32775049 CCGGGCATGG
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
23 19 0.25
24 58 0.75
ACGTcount: A:0.27, C:0.06, G:0.23, T:0.44
Consensus pattern (24 bp):
TGATTTAAATGACTGATTTGTCTG
Found at i:32775151 original size:27 final size:27
Alignment explanation
Indices: 32775113--32775177 Score: 82
Period size: 27 Copynumber: 2.4 Consensus size: 27
32775103 ATGGAGGAAG
32775113 TACTG-TACTGGTGGCTCT-GCCACA-A
1 TACTGTTACTGGTGGCT-TGGCCACATA
32775138 TCACTGTTACTGGTGGCTTGGCCACATA
1 T-ACTGTTACTGGTGGCTTGGCCACATA
*
32775166 TACTATTACTGG
1 TACTGTTACTGG
32775178 CAGCTTTGCT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
25 1 0.03
26 5 0.14
27 27 0.77
28 2 0.06
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (27 bp):
TACTGTTACTGGTGGCTTGGCCACATA
Found at i:32775183 original size:27 final size:26
Alignment explanation
Indices: 32775131--32775209 Score: 68
Period size: 27 Copynumber: 3.0 Consensus size: 26
32775121 TGGTGGCTCT
* **
32775131 GCCACAATCACTGTTACTGGTGGCTTG
1 GCCACAAT-ACTATTACTGGCAGCTTG
*
32775158 GCCACATATACTATTACTGGCAGCTTT
1 GCCACA-ATACTATTACTGGCAGCTTG
** * *
32775185 GCTGCGATACTATTGCTGGCAGCTT
1 GCCACAATACTATTACTGGCAGCTT
32775210 TGCTGCGATG
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
26 18 0.42
27 23 0.53
28 2 0.05
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (26 bp):
GCCACAATACTATTACTGGCAGCTTG
Found at i:32775202 original size:14 final size:14
Alignment explanation
Indices: 32775183--32775228 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
32775173 ACTGGCAGCT
*
32775183 TTGCTGCGATACTA
1 TTGCTGCGATGCTA
32775197 TTGCTG-GCA-GCT-
1 TTGCTGCG-ATGCTA
32775209 TTGCTGCGATGCTA
1 TTGCTGCGATGCTA
32775223 TTGCTG
1 TTGCTG
32775229 GATTTGTACT
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
12 7 0.26
13 7 0.26
14 13 0.48
ACGTcount: A:0.13, C:0.22, G:0.28, T:0.37
Consensus pattern (14 bp):
TTGCTGCGATGCTA
Found at i:32775203 original size:26 final size:26
Alignment explanation
Indices: 32775165--32775229 Score: 112
Period size: 26 Copynumber: 2.5 Consensus size: 26
32775155 TTGGCCACAT
*
32775165 ATACTATTACTGGCAGCTTTGCTGCG
1 ATACTATTGCTGGCAGCTTTGCTGCG
32775191 ATACTATTGCTGGCAGCTTTGCTGCG
1 ATACTATTGCTGGCAGCTTTGCTGCG
*
32775217 ATGCTATTGCTGG
1 ATACTATTGCTGG
32775230 ATTTGTACTG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.17, C:0.22, G:0.26, T:0.35
Consensus pattern (26 bp):
ATACTATTGCTGGCAGCTTTGCTGCG
Found at i:32775275 original size:32 final size:32
Alignment explanation
Indices: 32775233--32775426 Score: 187
Period size: 32 Copynumber: 6.1 Consensus size: 32
32775223 TTGCTGGATT
* * *
32775233 TGTACTGATCATATTACCATTACTGATGGTTG
1 TGTACCGATCATATTACTATTACTGATGGCTG
*
32775265 TGTACCGATCATATTACCATTACTGATGGCTG
1 TGTACCGATCATATTACTATTACTGATGGCTG
* * * *
32775297 TGTGCCGATTATATTACTACTACTGATGGCTT
1 TGTACCGATCATATTACTATTACTGATGGCTG
* * *
32775329 TGTGCCGATCATACTATTATTACTGATGGCTG
1 TGTACCGATCATATTACTATTACTGATGGCTG
* * * *
32775361 TATACC-AGTCATATTACTACTACTGATGACTT
1 TGTACCGA-TCATATTACTATTACTGATGGCTG
* * * *
32775393 TGTGCCAATCATATTACT-GTACTTATGGCT-
1 TGTACCGATCATATTACTATTACTGATGGCTG
32775423 TGTA
1 TGTA
32775427 GTCATTCTGT
Statistics
Matches: 135, Mismatches: 25, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
30 3 0.02
31 10 0.07
32 121 0.90
33 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.39
Consensus pattern (32 bp):
TGTACCGATCATATTACTATTACTGATGGCTG
Found at i:32775397 original size:96 final size:95
Alignment explanation
Indices: 32775251--32775423 Score: 231
Period size: 96 Copynumber: 1.8 Consensus size: 95
32775241 TCATATTACC
* * * * * *
32775251 ATTACTGATGGTTGTGTACCGATCATATTACCATTACTGATGGCTGTGTGCCGATTATATTACTA
1 ATTACTGATGGCTGTATACCGATCATATTACCACTACTGATGACTGTGTGCCAATCATATTACT-
32775316 CTACTGATGGCTTTGTGCCGATCATACTATT
65 CTACTGATGGCTTTGTGCCGATCATACTATT
* *
32775347 ATTACTGATGGCTGTATACC-AGTCATATTACTACTACTGATGACTTTGTGCCAATCATATTACT
1 ATTACTGATGGCTGTATACCGA-TCATATTACCACTACTGATGACTGTGTGCCAATCATATTACT
* *
32775411 GTACTTATGGCTT
65 CTACTGATGGCTT
32775424 GTAGTCATTC
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
95 12 0.18
96 54 0.82
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.39
Consensus pattern (95 bp):
ATTACTGATGGCTGTATACCGATCATATTACCACTACTGATGACTGTGTGCCAATCATATTACTC
TACTGATGGCTTTGTGCCGATCATACTATT
Found at i:32778525 original size:14 final size:14
Alignment explanation
Indices: 32778502--32778531 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
32778492 CATCCCTCAT
*
32778502 TCACATCTCTTCTC
1 TCACAACTCTTCTC
32778516 TCACAACTCTTCTC
1 TCACAACTCTTCTC
32778530 TC
1 TC
32778532 CTCTCTCACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.43, G:0.00, T:0.40
Consensus pattern (14 bp):
TCACAACTCTTCTC
Found at i:32780414 original size:15 final size:15
Alignment explanation
Indices: 32780394--32780424 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
32780384 AATAACATGT
32780394 TTATCTTTATAAATA
1 TTATCTTTATAAATA
32780409 TTATCTTTATAAATA
1 TTATCTTTATAAATA
32780424 T
1 T
32780425 GTTTTATCGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (15 bp):
TTATCTTTATAAATA
Found at i:32785333 original size:50 final size:50
Alignment explanation
Indices: 32785253--32785389 Score: 211
Period size: 50 Copynumber: 2.7 Consensus size: 50
32785243 ATTTGGGTAA
* **
32785253 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
* *
32785303 AGAGGTCCCATGTAACACCATGTCTGGGACATGGCGTTGGCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
**
32785353 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCAT
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCAT
32785390 GGGAACCTAA
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 78 1.00
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
Found at i:32791259 original size:18 final size:20
Alignment explanation
Indices: 32791236--32791279 Score: 67
Period size: 18 Copynumber: 2.4 Consensus size: 20
32791226 AATTTTTGTC
32791236 ATAAAATAATT-AATT-TTT
1 ATAAAATAATTAAATTGTTT
32791254 ATAAAATAATTAAATTGTTT
1 ATAAAATAATTAAATTGTTT
32791274 -TAAAAT
1 ATAAAAT
32791280 TTTGAACATG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.46
19 10 0.42
20 3 0.12
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (20 bp):
ATAAAATAATTAAATTGTTT
Found at i:32791900 original size:14 final size:14
Alignment explanation
Indices: 32791877--32791906 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
32791867 CATCCCTCAT
*
32791877 TCACATCTCTTCTC
1 TCACAACTCTTCTC
32791891 TCACAACTCTTCTC
1 TCACAACTCTTCTC
32791905 TC
1 TC
32791907 CTCTCTCACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.43, G:0.00, T:0.40
Consensus pattern (14 bp):
TCACAACTCTTCTC
Found at i:32801483 original size:25 final size:25
Alignment explanation
Indices: 32801427--32801484 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
32801417 CTATTAAATT
*
32801427 TTAATTTAATTATCTAATTTTTCAA
1 TTAATTAAATTATCTAATTTTTCAA
*
32801452 TTTATTAAATTAT-TAATATTTT-ATA
1 TTAATTAAATTATCTAAT-TTTTCA-A
32801477 TTAATTAA
1 TTAATTAA
32801485 TTTTTTGAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
24 5 0.18
25 23 0.82
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (25 bp):
TTAATTAAATTATCTAATTTTTCAA
Found at i:32806954 original size:25 final size:25
Alignment explanation
Indices: 32806898--32806955 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
32806888 CTATTAAATT
*
32806898 TTAATTTAATTATCTAATTTTTCAA
1 TTAATTAAATTATCTAATTTTTCAA
*
32806923 TTTATTAAATTAT-TAATATTTT-ATA
1 TTAATTAAATTATCTAAT-TTTTCA-A
32806948 TTAATTAA
1 TTAATTAA
32806956 TTTTTTGAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
24 5 0.18
25 23 0.82
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (25 bp):
TTAATTAAATTATCTAATTTTTCAA
Found at i:32825655 original size:39 final size:41
Alignment explanation
Indices: 32825547--32825682 Score: 131
Period size: 40 Copynumber: 3.4 Consensus size: 41
32825537 TGTTTGGACA
* * * *
32825547 AAAAACGCCGA-TAAGAATCGAGCATTAGCTGCGCTTTA-TG
1 AAAAACGCC-ACTAAAAATCGAGCATTAGCGGCGTTTTACAG
* * * *
32825587 GAAATCGCCACTAAATATCGAGCATTAGCGGTGTTTTTA-A-
1 AAAAACGCCACTAAAAATCGAGCATTAGCGGCG-TTTTACAG
*
32825627 AAAAACGCCGCTAAAAAT-GAGCATTAGCGGCGTTTTACAG
1 AAAAACGCCACTAAAAATCGAGCATTAGCGGCGTTTTACAG
32825667 AAAAACGCCAC-AAAAA
1 AAAAACGCCACTAAAAA
32825683 CCAAAAGCCC
Statistics
Matches: 78, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
38 5 0.06
39 20 0.26
40 49 0.63
41 4 0.05
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (41 bp):
AAAAACGCCACTAAAAATCGAGCATTAGCGGCGTTTTACAG
Found at i:32826118 original size:15 final size:14
Alignment explanation
Indices: 32826099--32826147 Score: 71
Period size: 14 Copynumber: 3.4 Consensus size: 14
32826089 ACTATTTTAA
*
32826099 GGTTTAGGGAGTAT
1 GGTTTAGGGATTAT
32826113 GAGTTTAGGGATTAT
1 G-GTTTAGGGATTAT
*
32826128 GGATTAGGGATTAT
1 GGTTTAGGGATTAT
32826142 GGTTTA
1 GGTTTA
32826148 AGGTTTGAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
14 18 0.58
15 13 0.42
ACGTcount: A:0.24, C:0.00, G:0.37, T:0.39
Consensus pattern (14 bp):
GGTTTAGGGATTAT
Found at i:32826176 original size:7 final size:7
Alignment explanation
Indices: 32826166--32826224 Score: 55
Period size: 7 Copynumber: 8.1 Consensus size: 7
32826156 GATTTAAGGT
32826166 TTAGGGG
1 TTAGGGG
**
32826173 TTAGACG
1 TTAGGGG
32826180 TTAGGGG
1 TTAGGGG
* *
32826187 TTAAGAG
1 TTAGGGG
32826194 TTAGGGG
1 TTAGGGG
32826201 TTTAGGGG
1 -TTAGGGG
*
32826209 TTAGGGA
1 TTAGGGG
32826216 TTCAGGGG
1 TT-AGGGG
32826224 T
1 T
32826225 CGAGTTAGGA
Statistics
Matches: 40, Mismatches: 10, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
7 28 0.70
8 12 0.30
ACGTcount: A:0.20, C:0.03, G:0.46, T:0.31
Consensus pattern (7 bp):
TTAGGGG
Found at i:32826440 original size:21 final size:22
Alignment explanation
Indices: 32826403--32826470 Score: 79
Period size: 21 Copynumber: 3.2 Consensus size: 22
32826393 GGAGTATGGA
* *
32826403 TTAGGGA-TTATGGTTTAAGGG
1 TTAGGGATTTAAGGTTTAGGGG
32826424 TT-GGGATTTAAGGTTTAGGGG
1 TTAGGGATTTAAGGTTTAGGGG
*
32826445 TTAGGG-TTTATGGGTTTAGGGG
1 TTAGGGATTTA-AGGTTTAGGGG
32826467 TTAG
1 TTAG
32826471 ATGCGTTAGG
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
20 4 0.10
21 20 0.49
22 17 0.41
ACGTcount: A:0.19, C:0.00, G:0.41, T:0.40
Consensus pattern (22 bp):
TTAGGGATTTAAGGTTTAGGGG
Found at i:32826459 original size:8 final size:7
Alignment explanation
Indices: 32826403--32826470 Score: 50
Period size: 7 Copynumber: 9.6 Consensus size: 7
32826393 GGAGTATGGA
*
32826403 TTAGGGA
1 TTAGGGT
*
32826410 TTATGGT
1 TTAGGGT
32826417 TTAAGGG-
1 TT-AGGGT
32826424 TT-GGGAT
1 TTAGGG-T
*
32826431 TTAAGGT
1 TTAGGGT
*
32826438 TTAGGGG
1 TTAGGGT
32826445 TTAGGGT
1 TTAGGGT
32826452 TTATGGGT
1 TTA-GGGT
*
32826460 TTAGGGG
1 TTAGGGT
32826467 TTAG
1 TTAG
32826471 ATGCGTTAGG
Statistics
Matches: 48, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
5 3 0.06
7 33 0.69
8 12 0.25
ACGTcount: A:0.19, C:0.00, G:0.41, T:0.40
Consensus pattern (7 bp):
TTAGGGT
Found at i:32826703 original size:15 final size:14
Alignment explanation
Indices: 32826665--32826699 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
32826655 CATATTTTAA
32826665 GGTTTAGGGAGTAT
1 GGTTTAGGGAGTAT
*
32826679 GGATTTAGGGATTAT
1 GG-TTTAGGGAGTAT
32826694 GGTTTA
1 GGTTTA
32826700 AGGGTTGGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.23, C:0.00, G:0.37, T:0.40
Consensus pattern (14 bp):
GGTTTAGGGAGTAT
Found at i:32826720 original size:21 final size:20
Alignment explanation
Indices: 32826686--32826726 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
32826676 TATGGATTTA
*
32826686 GGGATTATGGTTTAAGGGTT
1 GGGATTAAGGTTTAAGGGTT
*
32826706 GGGATTTAAGGTTTAGGGGTT
1 GGGA-TTAAGGTTTAAGGGTT
32826727 AGACATTAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.20, C:0.00, G:0.41, T:0.39
Consensus pattern (20 bp):
GGGATTAAGGTTTAAGGGTT
Found at i:32826855 original size:272 final size:271
Alignment explanation
Indices: 32826115--32826865 Score: 1057
Period size: 272 Copynumber: 2.7 Consensus size: 271
32826105 GGGAGTATGA
* * * *
32826115 GTTTAGGGATTATGGATTAGGGATTATGGTTTAAGGTTTGAGATTTAAGGTTTAGGGGTTAGACG
1 GTTTAGGGAGTATGGATTAGGGATTATGGTTTAAGGGTTGGGATTTAAGGTTTAGGGGTTAGACA
* * *
32826180 TTAGGGGTTAAGAGTTAGGGGTTTAGGGGTTAGGGATTCAGGGGTCGAGTT-AGGATTTTGGGCA
66 TTAGGGGTTAAGAGTTAGGGGTTTA-AGGTTAGGGATTTA-GGGTCGGGTTAAGG-TTTTGGG--
32826244 TTTAGATT-A-T-TTTTTTAATTTATATTTTAAATATGTTCTTATATAATTGTAAAAGAGATAAT
126 TTTAGATTAATTATTTTTTAATTTATATTTTAAATATGTTCTTATATAATTGTAAAAGAGATAAT
* * *
32826306 AATAAATATGTTTAGGGTTTTTGGTTTAGGGTATATGATTTATTTAATATTTAAGACCGGTTTAA
191 AATAAATATGTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTTAAGATTTAAGACCGGTTTAA
32826371 GAGTTCATATTTTAAG
256 GAGTTCATATTTTAAG
*
32826387 ATTTAGGGAGTATGGATTAGGGATTATGGTTTAAGGGTTGGGATTTAAGGTTTAGGGGTTAGGGT
1 GTTTAGGGAGTATGGATTAGGGATTATGGTTTAAGGGTTGGGATTTAAGGTTTAGGGGTTA--G-
** * * * *
32826452 TTATGGGTTTAGGGGTTAGATGCGTTAGGGGTTAAAAGTTAGGGATTTAGTGGTCGGGTTAGGGT
63 --A---CATTAGGGGTTA-A-GAGTTAGGGGTTTAAGGTTAGGGATTTAG-GGTCGGGTTAAGGT
32826517 TTTGGGTTTAGA-TAATTATTTTTTAATTTATATTTTAAATATGTTCTTATATAATTGTAAAAGA
120 TTTGGGTTTAGATTAATTATTTTTTAATTTATATTTTAAATATGTTCTTATATAATTGTAAAAGA
* *
32826581 GATAATAATAAATTTGTTTAGGG-TTTTAGTTTAGGGTAT-TGATTAATTTAAGATTTAAGGCCG
185 GATAATAATAAATATGTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTTAAGATTTAAGACCG
*
32826644 GTTTAGGAGTTCATATTTTAAG
250 GTTTAAGAGTTCATATTTTAAG
32826666 GTTTAGGGAGTATGGATTTAGGGATTATGGTTTAAGGGTTGGGATTTAAGGTTTAGGGGTTAGAC
1 GTTTAGGGAGTATGGA-TTAGGGATTATGGTTTAAGGGTTGGGATTTAAGGTTTAGGGGTTAGAC
* * * *
32826731 ATTAGGGGTTAAAAGTTAGGGATTTAAGGTTTAGGGATTTAGGCGCCGGGTTAAGGTTTTGAGTT
65 ATTAGGGGTTAAGAGTTAGGGGTTTAAGG-TTAGGGATTTAGG-GTCGGGTTAAGGTTTTGGGTT
*
32826796 TAGATTAATTATTTTTTAATTTATATTTTAAATATGTTCTTGTATAATTGTAAAAGAGATAATAA
128 TAGATTAATTATTTTTTAATTTATATTTTAAATATGTTCTTATATAATTGTAAAAGAGATAATAA
32826861 TAAAT
193 TAAAT
32826866 CAAATATATT
Statistics
Matches: 429, Mismatches: 31, Indels: 38
0.86 0.06 0.08
Matches are distributed among these distances:
270 13 0.03
271 35 0.08
272 131 0.31
274 1 0.00
275 1 0.00
277 1 0.00
278 2 0.00
279 64 0.15
280 72 0.17
281 95 0.22
282 14 0.03
ACGTcount: A:0.28, C:0.03, G:0.27, T:0.42
Consensus pattern (271 bp):
GTTTAGGGAGTATGGATTAGGGATTATGGTTTAAGGGTTGGGATTTAAGGTTTAGGGGTTAGACA
TTAGGGGTTAAGAGTTAGGGGTTTAAGGTTAGGGATTTAGGGTCGGGTTAAGGTTTTGGGTTTAG
ATTAATTATTTTTTAATTTATATTTTAAATATGTTCTTATATAATTGTAAAAGAGATAATAATAA
ATATGTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTTAAGATTTAAGACCGGTTTAAGAGTT
CATATTTTAAG
Found at i:32827463 original size:103 final size:102
Alignment explanation
Indices: 32827348--32827550 Score: 311
Period size: 104 Copynumber: 2.0 Consensus size: 102
32827338 AAAACGCTGC
*
32827348 AAAAATAAATCAATTAAT-AAAATACAAAATAAAAAATTTTTAGCATAAG-AAAACGACGTCATT
1 AAAAATAAATCAATTAATAAAAAAACAAAATAAAAAATTTTTAGCAT-AGCAAAACGACGTCATT
32827411 TTGTTCAAAATGAAATAATTTCATAAAAACGCCGCAAACA
65 TTGTTCAAAATGAAATAATTT--TAAAAACGCCGCAAACA
* * * * *
32827451 AAAAATAAATCAATTTATAAAAAAATAAAATAAAAATTTTTTAGCATAGCAAAATGGCGTCATTT
1 AAAAATAAATCAATTAATAAAAAAACAAAATAAAAAATTTTTAGCATAGCAAAACGACGTCATTT
32827516 TGTTCAAAATGAAATAATTTTAAAAACGCCGCAAA
66 TGTTCAAAATGAAATAATTTTAAAAACGCCGCAAA
32827551 AGATAAGCAA
Statistics
Matches: 92, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
102 15 0.16
103 19 0.21
104 58 0.63
ACGTcount: A:0.53, C:0.11, G:0.08, T:0.27
Consensus pattern (102 bp):
AAAAATAAATCAATTAATAAAAAAACAAAATAAAAAATTTTTAGCATAGCAAAACGACGTCATTT
TGTTCAAAATGAAATAATTTTAAAAACGCCGCAAACA
Found at i:32827668 original size:240 final size:233
Alignment explanation
Indices: 32827224--32827671 Score: 614
Period size: 240 Copynumber: 1.9 Consensus size: 233
32827214 ATTTTATAAA
*** **
32827224 AAATCAATTTATAAAAAACAAAATAATTTTTTTTTAGTGTAGCAAAACGGCGTCATTTTGTTCAA
1 AAATCAATTTATAAAAAACAAAATAAAAATTTTTTAGCATAGCAAAACGGCGTCATTTTGTTCAA
** * * * *
32827289 AATAAAATAATTTTTTGCTGAAAATAAAGCAATAGCGGCGTTTTTATAAAAAACGCTGCAAAAAT
66 AATAAAATAATTTTACGCCGAAAAGAAAGCAATAGCGGCGTTTTTATAAAAAACACCGCAAAAAT
32827354 AAATCAATTAATAAAATACAAAATAAAAAATTTTTAGCATAAGAAAACGACGTCATTTTGTTCAA
131 AAATCAATTAATAAAATACAAAATAAAAAATTTTTAGCATAAGAAAACGACGTCATTTTGTTCAA
32827419 AATGAAATAATTTCATAAAAACGCCGCAAACAAAAAAT
196 AATGAAATAATTTCATAAAAACGCCGCAAACAAAAAAT
* *
32827457 AAATCAATTTATAAAAAAATAAAATAAAAATTTTTTAGCATAGCAAAATGGCGTCATTTTGTTCA
1 AAATCAATTTAT-AAAAAACAAAATAAAAATTTTTTAGCATAGCAAAACGGCGTCATTTTGTTCA
* *
32827522 AAATGAAATAATTTTAAAAACGCCGCAAAAGATAAGCAATAGCGGCGTTTTTATGAAAAACACCG
65 AAATAAAATAATTTT----ACGCCG-AAAAGA-AAGCAATAGCGGCGTTTTTATAAAAAACACCG
* * * *
32827587 CAAAAAATAAATCAATTTATAAAA-ATCAAAAT-AAAATTTTTTTG-ATAAGAAGAACGGCGTCA
124 C-AAAAATAAATCAATTAATAAAATA-CAAAATAAAAAATTTTTAGCATAAGAA-AACGACGTCA
32827649 TTTTGTTCAAAATGAAATAATTT
186 TTTTGTTCAAAATGAAATAATTT
32827672 TTTACGGCGT
Statistics
Matches: 186, Mismatches: 19, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
233 12 0.06
234 59 0.32
238 3 0.02
239 12 0.06
240 73 0.39
241 27 0.15
ACGTcount: A:0.48, C:0.11, G:0.11, T:0.30
Consensus pattern (233 bp):
AAATCAATTTATAAAAAACAAAATAAAAATTTTTTAGCATAGCAAAACGGCGTCATTTTGTTCAA
AATAAAATAATTTTACGCCGAAAAGAAAGCAATAGCGGCGTTTTTATAAAAAACACCGCAAAAAT
AAATCAATTAATAAAATACAAAATAAAAAATTTTTAGCATAAGAAAACGACGTCATTTTGTTCAA
AATGAAATAATTTCATAAAAACGCCGCAAACAAAAAAT
Found at i:32831899 original size:15 final size:14
Alignment explanation
Indices: 32831866--32831892 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32831856 TATCATAGAA
32831866 ATAAAAATTATTTG
1 ATAAAAATTATTTG
32831880 ATAAAAATTATTT
1 ATAAAAATTATTT
32831893 TTTTAAAGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (14 bp):
ATAAAAATTATTTG
Found at i:32832005 original size:43 final size:43
Alignment explanation
Indices: 32831910--32832218 Score: 320
Period size: 43 Copynumber: 7.3 Consensus size: 43
32831900 GATATGTTTT
* *
32831910 TAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGT-TTGATCTA
1 TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCTTGATCTA
* * * *
32831952 CAGTGGCGTTTGTGGAAAATGCGCCGCTAAAGGTCTTGATTTA
1 TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCTTGATCTA
* * * *
32831995 TAGCGGCGTTTGTGG-GAAATCGCCGCTAAAGATCTTGAGCTA
1 TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCTTGATCTA
* * * * * *
32832037 TAGCGGTGTTTTTGTAAAAAGTGTCGTTAAAGGTTCTT-ATCTA
1 TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGG-TCTTGATCTA
* *
32832080 TAGTGGCGTTTGT-GAAAAAGCGCCGCTAAAGGTCCTGATCTA
1 TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCTTGATCTA
* * * **
32832122 CAGCGGCGTTTGTTGAAAAAGTGCCGCTAAAGGTCCCGATCTA
1 TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCTTGATCTA
* * * * * *
32832165 TAGCGGCGTTTGTTGTATAAGCGACGCTAAAGGTCATGACCTA
1 TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCTTGATCTA
32832208 TAGCGGCGTTT
1 TAGCGGCGTTT
32832219 TTAGAAATAA
Statistics
Matches: 218, Mismatches: 44, Indels: 9
0.80 0.16 0.03
Matches are distributed among these distances:
41 3 0.01
42 93 0.43
43 118 0.54
44 4 0.02
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (43 bp):
TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCTTGATCTA
Found at i:32832068 original size:85 final size:84
Alignment explanation
Indices: 32831910--32832225 Score: 330
Period size: 85 Copynumber: 3.7 Consensus size: 84
32831900 GATATGTTTT
* * * * *
32831910 TAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGT-TTGATCTACAGTGGCGTTTGTGGAAAATGC
1 TAGCGGCGTTTGTGGG-AAAGCGCCGCTAAAGGTCTTGATCTACAGCGGCGTTT-TTGAAAAAGT
*
32831974 GCCGCTAAAGGTCTTGATTTA
64 GCCGCTAAAGGTCTTGATCTA
* * * * *
32831995 TAGCGGCGTTTGTGGGAAATCGCCGCTAAAGATCTTGAGCTATAGCGGTGTTTTTGTAAAAAGTG
1 TAGCGGCGTTTGTGGGAAAGCGCCGCTAAAGGTCTTGATCTACAGCGGCGTTTTTG-AAAAAGTG
* *
32832060 TCGTTAAAGGTTCTT-ATCTA
65 CCGCTAAAGG-TCTTGATCTA
* ** *
32832080 TAGTGGCGTTTGTGAAAAAGCGCCGCTAAAGGTCCTGATCTACAGCGGCGTTTGTTGAAAAAGTG
1 TAGCGGCGTTTGTGGGAAAGCGCCGCTAAAGGTCTTGATCTACAGCGGCGTTT-TTGAAAAAGTG
**
32832145 CCGCTAAAGGTCCCGATCTA
65 CCGCTAAAGGTCTTGATCTA
* * * * * *
32832165 TAGCGGCGTTTGTTGTATAAGCGACGCTAAAGGTCATGACCTATAGCGGCGTTTTTAGAAA
1 TAGCGGCGTTTGTGGGA-AAGCGCCGCTAAAGGTCTTGATCTACAGCGGCGTTTTT-GAAA
32832226 TAAACGCCGC
Statistics
Matches: 190, Mismatches: 34, Indels: 13
0.80 0.14 0.05
Matches are distributed among these distances:
84 18 0.09
85 129 0.68
86 43 0.23
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (84 bp):
TAGCGGCGTTTGTGGGAAAGCGCCGCTAAAGGTCTTGATCTACAGCGGCGTTTTTGAAAAAGTGC
CGCTAAAGGTCTTGATCTA
Found at i:32838815 original size:36 final size:37
Alignment explanation
Indices: 32838775--32838847 Score: 87
Period size: 37 Copynumber: 2.0 Consensus size: 37
32838765 TCAAAAACCT
32838775 GCAAAACAAACAC-TCAA-CACTCAAAAAGAAAAATTA
1 GCAAAACAAAC-CGTCAATCACTCAAAAAGAAAAATTA
* ** *
32838811 GCAAACCTCACCGTTAATCACTCAAAAAGAAAAATTA
1 GCAAAACAAACCGTCAATCACTCAAAAAGAAAAATTA
32838848 AATTCTCAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
35 1 0.03
36 11 0.35
37 19 0.61
ACGTcount: A:0.55, C:0.23, G:0.07, T:0.15
Consensus pattern (37 bp):
GCAAAACAAACCGTCAATCACTCAAAAAGAAAAATTA
Found at i:32842236 original size:5 final size:5
Alignment explanation
Indices: 32842226--32842261 Score: 63
Period size: 5 Copynumber: 7.0 Consensus size: 5
32842216 AAAAAGATAG
32842226 AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA ATAGAA
1 AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA A-AGAA
32842262 TGCTTGTGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 26 0.87
6 4 0.13
ACGTcount: A:0.78, C:0.00, G:0.19, T:0.03
Consensus pattern (5 bp):
AAGAA
Found at i:32842939 original size:42 final size:42
Alignment explanation
Indices: 32842883--32843224 Score: 450
Period size: 42 Copynumber: 8.1 Consensus size: 42
32842873 ATATACAATA
* * *
32842883 CAATGAAAAGTAAATGGACCTCCACACCCGTGCCTTTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* * *
32842925 TAATGAAAAATAAATGGACCTCCACACCTAGGCCTCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* * *
32842967 CAATGAAAAGTAAATGGACCTTCAGACCTGGGTCTCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
*
32843009 CAATGAAAAGTAAATGGACCTCCACACTTGGGCCTCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* * * **
32843051 CAATGAAAAGTTAATGGACCTCCACACTTAGGTTTCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* * *
32843093 CAATGAAAAATGAATGGACCTCCACACCTGGGACTCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* * * *
32843135 CAATGAAAAGTGAATAGACCTCCACACATGGGCCTTTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* * **
32843177 CAATAAAAAGTTAATGGACCTCCACACCTAAGCCTCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
32843219 CAATGA
1 CAATGA
32843225 TTGCTTTCCT
Statistics
Matches: 261, Mismatches: 39, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 261 1.00
ACGTcount: A:0.38, C:0.23, G:0.17, T:0.22
Consensus pattern (42 bp):
CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
Found at i:32843109 original size:126 final size:126
Alignment explanation
Indices: 32842883--32843224 Score: 504
Period size: 126 Copynumber: 2.7 Consensus size: 126
32842873 ATATACAATA
** * * * *
32842883 CAATGAAAAGTAAATGGACCTCCACACCCGTGCCTTTAAATGTAATGAAAAATAAATGGACCTCC
1 CAATGAAAAGTAAATGGACCTCCACACATGGGCCTTTAAATGCAATGAAAAGTTAATGGACCTCC
* * * *
32842948 ACACCTAGGCCTCTAAATGCAATGAAAAGTAAATGGACCTTCAGACCTGGGTCTCTAAATG
66 ACACCTAGGCCTCTAAATGCAATGAAAAATAAATGGACCTCCACACCTGGGACTCTAAATG
* *
32843009 CAATGAAAAGTAAATGGACCTCCACACTTGGGCCTCTAAATGCAATGAAAAGTTAATGGACCTCC
1 CAATGAAAAGTAAATGGACCTCCACACATGGGCCTTTAAATGCAATGAAAAGTTAATGGACCTCC
* ** *
32843074 ACACTTAGGTTTCTAAATGCAATGAAAAATGAATGGACCTCCACACCTGGGACTCTAAATG
66 ACACCTAGGCCTCTAAATGCAATGAAAAATAAATGGACCTCCACACCTGGGACTCTAAATG
* * *
32843135 CAATGAAAAGTGAATAGACCTCCACACATGGGCCTTTAAATGCAATAAAAAGTTAATGGACCTCC
1 CAATGAAAAGTAAATGGACCTCCACACATGGGCCTTTAAATGCAATGAAAAGTTAATGGACCTCC
*
32843200 ACACCTAAGCCTCTAAATGCAATGA
66 ACACCTAGGCCTCTAAATGCAATGA
32843225 TTGCTTTCCT
Statistics
Matches: 192, Mismatches: 24, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
126 192 1.00
ACGTcount: A:0.38, C:0.23, G:0.17, T:0.22
Consensus pattern (126 bp):
CAATGAAAAGTAAATGGACCTCCACACATGGGCCTTTAAATGCAATGAAAAGTTAATGGACCTCC
ACACCTAGGCCTCTAAATGCAATGAAAAATAAATGGACCTCCACACCTGGGACTCTAAATG
Done.