Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2945

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 492

Length: 820
ACGTcount: A:0.35, C:0.21, G:0.11, T:0.33


Found at i:301 original size:41 final size:41

Alignment explanation


    Indices: 256--435  Score: 254
    Period size: 41  Copynumber: 4.4  Consensus size: 41

        246 GATTCACTAG

                       *                             
        256 CACTTAGCCTGTTAGGCTTAAAGCCTGATTCAGATCACCGA
          1 CACTTAGCCTGCTAGGCTTAAAGCCTGATTCAGATCACCGA

                                           *         *
        297 CACTTAGCCTGCTAGGCTTATAA-CCTGATTTAGATCACCGG
          1 CACTTAGCCTGCTAGGCTTA-AAGCCTGATTCAGATCACCGA

                      *         *            *      *
        338 CACTTAGCCTACTAGGCTTATAGCCTGATTCAGTTCACCGG
          1 CACTTAGCCTGCTAGGCTTAAAGCCTGATTCAGATCACCGA

                                *      *     *       
        379 CACTTAGCCTGCTAGGCTTATAGCCTGTTTCAGTTCACCGA
          1 CACTTAGCCTGCTAGGCTTAAAGCCTGATTCAGATCACCGA

                            
        420 CACTTAGCCTGCTAGG
          1 CACTTAGCCTGCTAGG

        436 TTTTAAAACC


Statistics
Matches: 127,  Mismatches: 10, Indels: 4
        0.90            0.07        0.03

Matches are distributed among these distances:
  40    1  0.01
  41  124  0.98
  42    2  0.02

ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29


Consensus pattern (41 bp):   
CACTTAGCCTGCTAGGCTTAAAGCCTGATTCAGATCACCGA

Done.