genome.fa.s1226.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold564
Parameters: 2 7 7 80 10 50 1000
Length:  45506

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2056--2091	6	6.2	6	90	6	56	86	0	13	0	0.58
2057--2091	11	3.1	11	91	4	52	85	0	14	0	0.59
2057--2091	17	2.1	17	94	0	61	85	0	14	0	0.59
2346--2391	21	2.1	22	88	4	67	43	2	6	47	1.41
6668--6739	3	24.3	3	70	13	51	34	1	1	62	1.13
7254--7292	18	2.2	18	86	9	53	43	0	17	38	1.50
7412--7454	22	1.9	23	95	4	79	18	20	23	37	1.94
12165--12440	137	2.0	138	99	0	545	47	5	9	38	1.57
12767--12800	18	1.9	17	88	5	50	52	0	11	35	1.38
13415--13454	20	2.0	20	90	9	64	45	0	0	55	0.99
14417--14452	16	2.2	16	95	0	63	30	2	13	52	1.55
15089--15222	56	2.4	56	86	8	177	25	11	18	44	1.83
23184--23261	29	2.6	30	81	4	95	32	38	15	14	1.87
23837--24046	116	1.8	117	85	5	300	39	5	6	48	1.53
27858--27891	15	2.3	15	100	0	68	20	26	8	44	1.81
28118--28529	125	3.3	126	92	1	675	25	20	20	33	1.97
28576--28841	87	2.9	96	75	15	288	39	15	3	41	1.64
28576--28864	95	3.1	93	71	15	238	39	16	3	40	1.65
31409--31466	18	3.3	18	76	13	59	25	10	1	62	1.37
31487--31555	20	3.5	20	78	11	63	34	2	1	60	1.20
32084--32122	20	1.9	21	89	5	62	38	25	10	25	1.87
33299--33364	33	2.0	33	100	0	132	36	15	24	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36323--36395	19	3.7	20	73	8	69	63	2	4	30	1.27
36566--36734	9	17.9	9	66	24	55	29	4	4	61	1.35
36661--36823	9	17.5	10	67	21	54	29	3	1	65	1.20
36661--36725	17	3.8	17	81	6	69	27	4	1	66	1.20
36705--36806	20	5.3	18	75	16	89	31	1	1	64	1.15
36705--36807	39	2.7	38	76	11	102	31	1	1	65	1.15
36705--36804	18	5.2	19	70	20	64	31	2	2	65	1.15
36987--37163	91	2.0	91	86	3	250	25	11	21	41	1.86
37136--37308	88	1.9	92	80	10	205	41	11	12	34	1.79
40222--40263	16	2.4	19	81	18	56	38	21	9	30	1.85
40417--40450	14	2.4	14	100	0	68	61	38	0	0	0.96
41514--41550	19	1.9	19	94	0	65	13	2	0	83	0.74
42012--42112	30	3.4	31	80	10	97	35	19	3	40	1.71
42036--42136	29	3.4	30	79	10	84	31	18	4	44	1.71
42049--42136	30	2.9	30	83	8	90	32	20	4	42	1.72
42615--42679	12	5.2	12	70	18	53	64	0	35	0	0.94
42612--42675	21	2.9	22	86	9	85	67	0	32	0	0.91
42755--42804	20	2.5	20	87	3	66	74	0	26	0	0.83
42889--42945	24	2.2	26	87	9	82	43	36	15	3	1.64
42922--42959	18	2.2	18	90	9	62	52	26	13	7	1.67
43058--43116	32	1.9	30	82	6	73	22	42	28	6	1.79
43618--43708	37	2.5	37	87	3	123	36	13	10	39	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43654--44250	18	32.3	18	68	21	165	32	10	10	45	1.73
43653--43708	19	3.0	19	78	21	73	33	10	10	44	1.74
43655--44109	17	25.9	17	66	25	84	31	11	10	46	1.74
43680--43735	29	2.0	28	89	6	87	26	10	14	48	1.76
43653--43834	65	2.9	63	82	9	203	32	10	9	46	1.71
43660--43754	46	2.1	45	86	9	131	27	12	11	48	1.76
43742--43780	8	4.8	8	81	6	51	20	12	7	58	1.58
43771--43938	34	4.7	36	68	15	98	32	11	10	45	1.74
43748--44252	171	3.0	171	95	2	903	32	10	10	46	1.73
44210--44249	17	2.3	18	86	4	55	40	12	7	40	1.71

Tables:   1

The End!