Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2750

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 514

Length: 857
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:857 original size:133 final size:133

Alignment explanation


    Indices: 442--855  Score: 528
    Period size: 133  Copynumber: 3.1  Consensus size: 133

        432 CAGTAGTGGG

                                                   *                     *   
        442 GCAGATCAAAGATGGCAGATTTTACCTCCCT-ATGGTTATAGTGGAGTACATTGAAGCCAGTAAT
          1 GCAGATCAAAGATGGCAGATTTTACCTCCCTGA-GGTTACAGTGGAGTACATTGAAGCCAGAAAT

                             *              *      *        **  *     *** ** 
        506 TCTACTTCCCTGGGCANNCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTG-GGCAGTA
         65 TCTACTTCCCTGGGCA-ACAGTGGAATAGATTAAAGATTTCAGATCTTGCCTTCCTGCATAAACA

             *   
        570 GTGGA
        129 GCGGA

             * *   *                                 *                       
        575 GTATATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGGGGAGTACATTGAAGCCAGAAATT
          1 GCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGAAATT

                           *             *                        *          
        640 CTACTTCCCTGGGCAGCAGTGGAATAGATCAAAGATTTCAGATCTTGCCTTCCTACATAAACAGC
         66 CTACTTCCCTGGGCAACAGTGGAATAGATTAAAGATTTCAGATCTTGCCTTCCTGCATAAACAGC

               
        705 GGA
        131 GGA

                            *                 *   *          *               
        708 GCAGATCAAAGATGG-TGAATTTTACCTCCCTGAAGTTGCAGTGGAGTATATTGAAGCCAGAAAT
          1 GCAGATCAAAGATGGCAG-ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGAAAT

                         *                          *   *                    
        772 TCTACTTCCCTGGTCAACAGTGGAATAGATTAAAGATTTCGGATATTGCCTTCCTGCATAAACAG
         65 TCTACTTCCCTGGGCAACAGTGGAATAGATTAAAGATTTCAGATCTTGCCTTCCTGCATAAACAG

                
        837 CGGA
        130 CGGA

                           
        841 GCAGATCAAAGATGG
          1 GCAGATCAAAGATGG

        856 TG


Statistics
Matches: 244,  Mismatches: 34, Indels: 6
        0.86            0.12        0.02

Matches are distributed among these distances:
 132   33  0.14
 133  210  0.86
 134    1  0.00

ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27


Consensus pattern (133 bp):   
GCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGAAATT
CTACTTCCCTGGGCAACAGTGGAATAGATTAAAGATTTCAGATCTTGCCTTCCTGCATAAACAGC
GGA
Done.