Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold915

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4284
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29


Found at i:1630 original size:19 final size:19

Alignment explanation


    Indices: 1583--1645  Score: 99
    Period size: 19  Copynumber: 3.2  Consensus size: 19

       1573 ATTAATACTT

                                 
       1583 TTTAAGTACTTAGATGATTTA
          1 TTTAAGTACTTAGATGA--TA

             *                 
       1604 TATAAGTACTTAGATGATA
          1 TTTAAGTACTTAGATGATA

                               
       1623 TTTAAGTACTTAGATGATA
          1 TTTAAGTACTTAGATGATA

                
       1642 TTTA
          1 TTTA

       1646 GGATGTTTGG


Statistics
Matches: 40,  Mismatches: 2, Indels: 2
        0.91            0.05        0.05

Matches are distributed among these distances:
  19   24  0.60
  21   16  0.40

ACGTcount: A:0.37, C:0.05, G:0.14, T:0.44


Consensus pattern (19 bp):   
TTTAAGTACTTAGATGATA
Done.