Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3050

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 483

Length: 805
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34

Warning! 4 characters in sequence are not A, C, G, or T


Found at i:619 original size:17 final size:16

Alignment explanation


    Indices: 595--637  Score: 61
    Period size: 16  Copynumber: 2.6  Consensus size: 16

        585 AACCGTATAT

                            
        595 AATTTTTTTTCTTTC-
          1 AATTTTTTTTCTTTCG

                             
        610 AAGTTTTTTTTCTTTCG
          1 AA-TTTTTTTTCTTTCG

                       
        627 AATTTTCTTTT
          1 AATTTT-TTTT

        638 TTTTTCTGAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 4
        0.86            0.00        0.14

Matches are distributed among these distances:
  15    2  0.08
  16   17  0.68
  17    6  0.24

ACGTcount: A:0.14, C:0.12, G:0.05, T:0.70


Consensus pattern (16 bp):   
AATTTTTTTTCTTTCG

Done.