Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1293

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2111
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.25

Warning! 221 characters in sequence are not A, C, G, or T


Found at i:301 original size:20 final size:20

Alignment explanation


    Indices: 276--320  Score: 65
    Period size: 19  Copynumber: 2.3  Consensus size: 20

        266 GCGAAAATAC

                            *   
        276 AAAAGAAAAGAAAAATGAAA
          1 AAAAGAAAAGAAAAATCAAA

                          *     
        296 AAAAG-AAAGAAAATTCAAA
          1 AAAAGAAAAGAAAAATCAAA

                  
        315 AAAAGA
          1 AAAAGA

        321 GAATGAAAAN


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  19   17  0.77
  20    5  0.23

ACGTcount: A:0.78, C:0.02, G:0.13, T:0.07


Consensus pattern (20 bp):   
AAAAGAAAAGAAAAATCAAA

Done.