Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1191

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2415
ACGTcount: A:0.36, C:0.20, G:0.14, T:0.30


Found at i:1133 original size:21 final size:21

Alignment explanation


    Indices: 1107--1149  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1097 GTGAGATTCT

                                 
       1107 AACTTTTTATTCATTAAACTA
          1 AACTTTTTATTCATTAAACTA

                                 
       1128 AACTTTTTATTCATTAAACTA
          1 AACTTTTTATTCATTAAACTA

             
       1149 A
          1 A

       1150 GTGTGTTGTT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.40, C:0.14, G:0.00, T:0.47


Consensus pattern (21 bp):   
AACTTTTTATTCATTAAACTA
Done.