genome.fa.s1270.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold507
Parameters: 2 7 7 80 10 50 1000
Length:  154747

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33611--33653	13	3.3	12	81	12	50	2	0	13	83	0.74
33611--33662	21	2.5	21	87	6	70	1	1	13	82	0.84
37509--37640	50	2.6	51	82	3	167	37	13	14	34	1.86
41463--41512	27	1.9	27	84	8	68	56	20	0	24	1.43
41693--41813	50	2.4	52	87	2	174	37	13	17	32	1.88
44237--44413	27	6.6	27	86	0	201	43	9	20	26	1.82
44238--44413	54	3.3	54	86	0	244	43	9	20	26	1.81
45803--45843	20	2.0	21	85	4	57	24	21	17	36	1.94
48472--48505	18	1.9	17	88	5	50	23	11	2	61	1.43
56832--57260	212	2.0	212	100	0	858	31	19	14	34	1.92
58968--59052	25	3.4	25	71	19	70	38	20	12	28	1.89
58985--59231	25	9.9	25	80	3	219	38	23	12	26	1.89
58987--59197	75	2.8	75	86	1	289	38	22	11	27	1.89
58987--59231	75	3.3	74	81	4	276	38	23	11	26	1.89
60959--61005	23	2.1	23	84	7	62	51	12	4	31	1.59
71055--71109	20	2.8	20	83	10	76	23	21	16	38	1.93
75688--75734	20	2.4	20	89	10	71	4	17	2	76	1.04
82203--82270	20	3.5	19	74	6	64	36	11	27	23	1.90
85114--85153	19	2.1	19	85	4	53	12	27	15	45	1.82
85157--85196	20	2.0	20	90	0	62	25	25	15	35	1.94
87465--87554	30	2.9	30	78	18	94	75	3	16	4	1.10
87478--87608	6	21.0	6	71	10	93	72	3	18	6	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88181--88290	34	3.2	33	92	6	184	37	10	11	40	1.75
99673--99724	18	2.9	18	88	5	70	73	0	19	7	1.07
99671--99753	24	3.5	24	75	14	73	68	2	19	9	1.28
99692--99756	30	2.2	30	85	0	85	69	3	18	9	1.29
99674--99772	48	2.1	48	82	0	117	68	2	20	9	1.27
99692--99729	6	6.3	6	87	0	58	78	0	15	5	0.91
101614--101689	34	2.2	34	95	0	134	35	6	14	43	1.71
105448--105494	25	1.9	24	82	4	58	55	10	12	21	1.67
110681--110727	25	1.9	24	82	4	58	53	10	17	19	1.72
115942--115983	10	4.2	10	78	9	50	40	14	23	21	1.90
115948--116003	20	2.8	19	87	12	78	33	14	26	25	1.94
115946--116012	20	3.4	19	78	13	73	35	13	26	23	1.92
129909--129965	11	4.8	12	81	14	57	15	7	7	70	1.32
129908--129953	12	3.6	14	77	16	55	15	6	6	71	1.27
129918--129963	11	4.0	11	83	10	65	17	4	8	69	1.31
131180--131272	47	2.0	45	82	12	109	46	7	13	32	1.72
134090--134121	16	2.0	16	93	0	55	25	15	0	59	1.36
134349--134691	51	6.8	51	80	7	378	31	27	17	23	1.97
134339--134689	101	3.5	101	82	5	388	31	28	17	23	1.97
134349--134691	152	2.3	152	94	0	587	31	27	17	23	1.97
137304--137396	47	2.0	47	84	2	123	32	27	16	23	1.96
151871--151902	16	2.0	16	93	0	55	25	15	0	59	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152120--152315	51	3.9	51	76	7	193	30	27	17	25	1.97

Tables:   1

The End!