Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3184

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 472

Length: 787
ACGTcount: A:0.38, C:0.07, G:0.19, T:0.36


Found at i:605 original size:24 final size:23

Alignment explanation


    Indices: 564--610  Score: 60
    Period size: 24  Copynumber: 2.0  Consensus size: 23

        554 TACTCATGGG

                                    
        564 ACATTTAAAGTAAGGTAAGTAATA
          1 ACATTTAAAGTAAGGTAAG-AATA

                      *             
        588 ACATTTGAAATTAA-GTAAGAATA
          1 ACATTT-AAAGTAAGGTAAGAATA

        611 TGTGTGAATA


Statistics
Matches: 21,  Mismatches: 1, Indels: 3
        0.84            0.04        0.12

Matches are distributed among these distances:
  23    4  0.19
  24   11  0.52
  25    6  0.29

ACGTcount: A:0.51, C:0.04, G:0.15, T:0.30


Consensus pattern (23 bp):   
ACATTTAAAGTAAGGTAAGAATA
Done.