Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold576
Parameters: 2 7 7 80 10 50 1000
Length:  32587

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6789--6862
10
7.3
10
85
11
82
43
1
0
55
1.08
6792--6863
2
41.0
2
73
25
65
44
1
0
54
1.08
6792--6863
7
10.2
8
73
23
65
44
1
0
54
1.08
6911--6936
11
2.4
11
100
0
52
50
7
42
0
1.31
7959--8061
22
4.4
23
80
12
104
16
24
19
39
1.91
9640--9872
116
2.0
117
97
0
441
36
16
16
30
1.91
13602--13962
175
2.1
175
98
1
697
44
8
7
39
1.63
15627--15708
30
2.6
31
73
5
85
25
15
10
47
1.78
16345--16721
18
21.4
17
69
16
85
43
12
12
31
1.80
16345--16722
17
21.5
17
70
13
196
43
12
12
31
1.80
16342--16722
35
10.9
34
76
11
290
43
12
13
30
1.80
17040--17096
26
2.2
25
84
3
69
66
8
3
21
1.34
17183--17224
16
2.6
16
82
14
59
0
19
0
80
0.70
17181--17238
24
2.4
25
85
2
73
0
18
0
81
0.70
17453--17520
7
9.4
7
70
17
50
0
23
0
76
0.79
17452--17520
20
3.6
20
71
15
65
0
23
0
76
0.78
17463--17524
27
2.3
27
86
8
81
0
27
0
72
0.85
17605--17681
14
4.4
17
71
23
54
0
16
6
76
0.98
17606--17678
20
3.8
19
75
21
73
0
16
6
76
0.99
18019--18165
59
2.5
58
82
7
179
38
3
23
34
1.72
18019--18166
30
5.0
31
79
8
164
38
3
23
34
1.72
18348--18622
74
3.7
74
83
4
322
31
23
17
26
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18348--18622
149
1.8
150
83
4
369
31
23
17
26
1.97
27395--27429
18
1.9
18
88
0
52
48
5
2
42
1.41
27674--27725
16
3.2
16
78
10
61
48
11
9
30
1.72
27674--27762
17
5.2
17
73
14
58
43
13
10
32
1.77
27706--27746
20
2.0
21
90
9
68
39
12
7
41
1.70
27672--27787
52
2.3
51
79
10
130
46
12
7
32
1.71
27818--28101
18
16.1
18
71
16
202
42
11
14
31
1.81
27822--28101
35
8.0
35
77
9
241
43
11
13
31
1.81
27822--28101
17
15.9
17
70
15
151
43
11
13
31
1.81
28219--28262
21
2.2
20
87
4
61
40
9
9
40
1.68
28247--28286
19
2.0
20
85
4
55
60
10
10
20
1.57
28446--28495
6
8.7
6
80
10
52
66
0
2
32
1.03
28580--28635
28
2.0
28
96
0
103
48
21
12
17
1.80
28693--28723
13
2.5
12
90
10
53
0
16
0
83
0.64
28671--28724
15
3.7
14
80
11
56
0
18
0
81
0.69
28670--28724
16
3.7
15
76
16
60
0
18
0
81
0.68
28974--29011
7
5.3
7
87
6
58
0
18
0
81
0.69
28976--29014
11
3.5
11
86
13
62
0
20
0
79
0.73
29097--29173
14
4.4
17
71
23
54
0
16
6
76
0.98
29098--29170
20
3.8
19
75
21
73
0
16
6
76
0.99
29511--29660
30
5.0
30
81
6
180
39
2
23
35
1.66
29511--29660
59
2.5
58
82
6
174
39
2
23
35
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30158--30977
152
5.4
151
87
4
1032
38
19
14
27
1.91
30158--30977
227
3.6
224
86
5
1021
38
19
14
27
1.91
30158--30977
75
10.8
75
90
2
1044
38
19
14
27
1.91
30311--30977
302
2.2
302
90
2
1070
38
19
14
27
1.91
31834--31872
15
2.6
14
84
11
51
0
5
10
84
0.76

Tables:   1

The End!