genome.fa.s13.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  17  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6420695--6420728	18	1.9	18	88	5	52	73	2	2	20	1.09
6428205--6428238	7	4.9	7	96	0	59	38	32	0	29	1.58
6437298--6437344	25	1.9	25	86	4	69	14	25	21	38	1.92
6437429--6437546	25	4.9	25	71	14	86	20	29	20	29	1.97
6437503--6437563	24	2.6	23	82	7	68	19	26	19	34	1.96
6437428--6437562	48	2.8	47	77	6	119	21	28	19	31	1.97
6439177--6439208	13	2.5	13	100	0	64	0	28	40	31	1.57
6441226--6441541	51	6.4	51	89	8	483	31	23	13	31	1.93
6441230--6441541	94	3.2	94	90	6	507	31	24	13	31	1.94
6441226--6441536	101	3.1	101	88	7	494	30	23	13	31	1.93
6441615--6441647	17	1.9	17	88	11	50	45	21	0	33	1.52
6445428--6445462	9	3.9	9	85	14	54	45	11	11	31	1.76
6445499--6445540	21	2.0	21	81	9	50	21	35	0	42	1.53
6451175--6451212	20	2.0	20	84	5	51	39	0	5	55	1.23
6459187--6459409	86	2.6	86	90	2	353	42	8	13	36	1.74
6459801--6460332	265	2.0	266	99	0	1057	49	8	7	34	1.61
6467280--6467429	80	1.9	79	90	1	237	28	19	15	37	1.92
6484632--6484660	14	2.0	15	93	6	51	68	3	0	27	1.05
6487696--6487731	12	3.0	12	88	11	56	25	0	0	75	0.81
6497596--6497731	42	3.2	42	80	0	155	44	20	19	16	1.87
6497623--6497691	21	3.3	20	78	9	68	43	18	20	17	1.88
6499885--6499914	15	2.0	15	100	0	60	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6502716--6502751	2	18.0	2	100	0	72	50	0	0	50	1.00
6504109--6504142	2	17.0	2	100	0	68	50	0	0	50	1.00
6505599--6505626	3	9.3	3	100	0	56	32	0	0	67	0.91
6506696--6506739	22	2.0	22	81	4	52	38	4	2	54	1.33
6507832--6507869	18	2.2	18	85	4	51	13	23	2	60	1.45
6526440--6526678	119	2.0	119	99	0	469	28	15	18	36	1.92
6527599--6527628	15	2.1	15	93	6	53	23	20	3	53	1.60
6530433--6530505	24	3.0	24	81	0	92	23	28	16	31	1.96
6532861--6532896	2	18.0	2	88	0	54	50	0	2	47	1.15
6536640--6536683	24	1.9	23	86	9	63	61	2	6	29	1.34
6537947--6537979	12	2.9	12	86	13	52	75	9	6	9	1.18
6540598--6540657	21	2.9	21	79	0	66	15	28	16	40	1.89
6544476--6544511	18	2.1	18	94	5	65	41	16	19	22	1.90
6567841--6567881	2	20.5	2	94	0	73	46	0	2	51	1.14
6573343--6573472	45	2.9	44	85	3	170	39	10	23	26	1.86
6573480--6573616	27	5.1	27	72	0	112	37	20	25	16	1.93
6573594--6573752	27	5.9	27	82	0	156	42	13	19	25	1.87
6573482--6573635	54	2.9	54	80	0	182	38	20	24	17	1.93
6573548--6573747	81	2.5	81	78	0	211	42	14	20	23	1.88
6573597--6573744	54	2.7	54	86	0	197	43	13	18	25	1.86
6573516--6573763	54	4.6	54	77	3	185	39	16	21	22	1.91
6575809--6575836	6	4.7	6	100	0	56	28	0	0	71	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6581268--6581299	17	1.9	16	93	6	55	31	0	0	68	0.90
6582347--6582387	21	2.0	21	85	0	55	70	4	7	17	1.28
6591045--6591102	30	1.9	30	96	0	107	55	15	5	24	1.61
6596901--6597032	50	2.6	50	80	4	158	31	21	26	19	1.98
6599109--6599194	38	2.2	39	85	6	120	36	25	12	25	1.92
6599109--6599235	39	3.3	38	83	3	137	34	24	13	27	1.93
6599137--6599268	39	3.4	39	85	1	140	34	20	12	32	1.89
6601292--6601373	41	2.0	41	100	0	164	36	0	24	39	1.56
6609041--6609106	28	2.4	28	75	10	64	48	9	3	39	1.50
6610413--6610448	17	2.1	17	89	0	54	25	5	0	69	1.10
6615825--6615858	17	2.0	17	88	0	50	67	2	0	29	1.05
6617203--6617242	13	3.1	13	81	0	53	27	7	30	35	1.84
6619443--6619477	12	2.9	12	91	0	52	85	0	11	2	0.69
6627812--6627854	17	2.6	17	80	20	56	74	0	0	25	0.82
6627811--6627858	22	2.1	22	85	11	62	72	0	0	27	0.84
6645917--6645957	22	1.9	22	85	5	57	43	21	7	26	1.79
6651543--6651618	9	8.4	9	73	5	73	30	7	18	43	1.78
6651551--6651618	27	2.5	27	85	0	91	30	7	17	44	1.76
6653675--6653741	5	12.6	5	75	17	55	22	1	0	76	0.87
6653675--6653743	23	3.1	22	84	10	88	21	1	0	76	0.86
6653681--6653755	21	3.4	21	82	12	89	22	4	0	73	1.00
6653851--6653925	12	6.4	11	72	13	51	12	6	4	77	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6658573--6658653	10	8.4	10	75	15	64	58	2	3	35	1.29
6658618--6658670	18	2.9	17	80	8	61	62	0	0	37	0.96
6659228--6659277	20	2.5	20	87	9	66	38	4	2	56	1.30
6659228--6659286	21	2.8	21	85	12	68	38	3	1	55	1.26
6659246--6659325	30	2.7	29	83	9	99	37	1	2	58	1.19
6659228--6659294	21	3.3	20	83	6	64	40	2	1	55	1.24
6659242--6659324	10	8.6	9	69	18	51	36	1	2	60	1.18
6659302--6659372	30	2.4	29	86	11	92	26	8	2	61	1.38
6661838--6661916	37	2.2	37	84	11	101	49	0	8	41	1.34
6673482--6673528	14	3.4	14	77	11	51	23	0	6	70	1.10
6675990--6676123	23	6.0	23	89	2	184	38	23	20	17	1.93
6682113--6682260	45	3.2	46	79	5	172	52	18	4	24	1.63
6682122--6682262	48	3.0	47	83	3	196	50	19	4	25	1.67
6683510--6683548	13	2.9	14	81	11	55	25	17	0	56	1.41
6683653--6683787	37	3.4	40	72	13	118	31	25	17	25	1.97
6684616--6684657	2	21.5	2	86	13	61	50	0	2	47	1.14
6684641--6684709	34	2.0	34	81	10	79	44	7	2	44	1.46
6685825--6685853	6	4.8	6	100	0	58	86	0	13	0	0.58
6687602--6687646	18	2.4	19	92	3	74	37	13	0	48	1.42
6688935--6688969	2	17.5	2	93	0	52	48	5	0	45	1.26
6692606--6692661	27	2.0	28	93	3	96	41	8	0	50	1.34
6692713--6692770	27	2.1	27	96	0	107	22	29	31	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6692713--6692783	27	2.6	26	87	12	99	21	26	32	19	1.97
6692868--6692908	10	3.9	11	78	9	50	68	0	31	0	0.90
6693026--6693061	3	11.7	3	88	5	54	30	0	5	63	1.17
6702240--6702275	3	12.0	3	93	0	54	66	5	0	27	1.13
6704377--6704450	20	3.8	20	87	7	98	35	0	4	60	1.15
6704379--6704450	9	7.6	9	71	11	54	34	0	4	61	1.16
6720653--6720690	18	2.1	18	90	0	58	44	34	13	7	1.72
6720650--6720702	27	2.0	27	85	7	72	43	33	13	9	1.76
6720626--6720690	15	4.1	15	73	11	58	43	36	15	4	1.67
6725175--6725286	31	3.2	37	63	29	98	41	8	7	43	1.61
6725175--6725315	69	2.1	68	98	1	273	43	7	6	43	1.57
6729083--6729115	3	11.0	3	100	0	66	33	0	33	33	1.58
6733511--6733574	29	2.1	30	83	11	78	57	3	4	34	1.35
6734449--6734794	171	2.0	172	99	0	685	40	12	9	38	1.75
6739922--6739975	3	19.3	3	74	14	53	29	3	1	64	1.21
6739913--6739972	11	5.5	11	76	4	59	26	5	1	66	1.21
6741448--6741484	17	2.1	18	90	5	58	32	16	10	40	1.83
6743688--6743715	5	5.6	5	100	0	56	39	0	0	60	0.97
6744665--6744701	18	2.1	18	100	0	74	45	16	32	5	1.70
6748118--6748314	98	2.0	99	95	1	360	31	33	6	28	1.82
6749946--6749970	13	1.9	13	100	0	50	64	0	0	36	0.94
6750139--6750168	9	3.3	9	95	0	51	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6750140--6750176	17	2.1	18	90	5	58	51	0	0	48	1.00
6751245--6751310	27	2.4	27	89	5	105	39	10	1	48	1.47
6752055--6752123	27	2.6	27	92	0	111	17	31	23	27	1.97
6752173--6752245	28	2.6	28	91	2	112	42	0	9	47	1.36
6767926--6767987	30	2.1	30	84	6	81	30	33	11	24	1.90
6768125--6768158	3	11.3	3	100	0	68	0	32	0	67	0.91
6771399--6771445	24	1.9	25	83	12	62	57	2	4	36	1.30
6772449--6772502	12	4.5	12	85	0	72	0	11	22	66	1.22
6772449--6772502	24	2.2	24	93	0	90	0	11	22	66	1.22
6772449--6772502	6	9.0	6	76	8	56	0	11	22	66	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145