Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47972186
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2603476 characters in sequence are not A, C, G, or T
File 21 of 145
Found at i:8026225 original size:1 final size:1
Alignment explanation
Indices: 8026221--8026251 Score: 53
Period size: 1 Copynumber: 31.0 Consensus size: 1
8026211 AGAACTATGC
*
8026221 TTTTTTTTTTTTTTTTTTTTTTTATTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
8026252 CCTTTTACAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.03, C:0.00, G:0.00, T:0.97
Consensus pattern (1 bp):
T
Found at i:8026442 original size:120 final size:120
Alignment explanation
Indices: 8026229--8026470 Score: 457
Period size: 120 Copynumber: 2.0 Consensus size: 120
8026219 GCTTTTTTTT
** *
8026229 TTTTTTTTTTTTTTTATTTTTTTCCTTTTACATATGAACTTAAATTTTGCATTTTGTACGGGATC
1 TTTTTTTTTAGTTTAATTTTTTTCCTTTTACATATGAACTTAAATTTTGCATTTTGTACGGGATC
8026294 AATTGAAAATAGAAAAAAAAATAGGTAGCAAGAATTGCAACTGGGCATAGTTAAC
66 AATTGAAAATAGAAAAAAAAATAGGTAGCAAGAATTGCAACTGGGCATAGTTAAC
8026349 TTTTTTTTTAGTTTAATTTTTTTCCTTTTACATATGAACTTAAATTTTGCATTTTGTACGGGATC
1 TTTTTTTTTAGTTTAATTTTTTTCCTTTTACATATGAACTTAAATTTTGCATTTTGTACGGGATC
8026414 AATTGAAAATAGAAAAAAAAATAGGTAGCAAGAATTGCAACTGGGCATAGTTAAC
66 AATTGAAAATAGAAAAAAAAATAGGTAGCAAGAATTGCAACTGGGCATAGTTAAC
8026469 TT
1 TT
8026471 GAAAAGAATT
Statistics
Matches: 119, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 119 1.00
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.42
Consensus pattern (120 bp):
TTTTTTTTTAGTTTAATTTTTTTCCTTTTACATATGAACTTAAATTTTGCATTTTGTACGGGATC
AATTGAAAATAGAAAAAAAAATAGGTAGCAAGAATTGCAACTGGGCATAGTTAAC
Found at i:8036166 original size:28 final size:28
Alignment explanation
Indices: 8036126--8036192 Score: 118
Period size: 28 Copynumber: 2.4 Consensus size: 28
8036116 AACATAGGAG
8036126 ATACACTAATTAAGTTCAAGCTTATGGT
1 ATACACTAATTAAGTTCAAGCTTATGGT
8036154 ATACACTAATTAAGTTCAAGCTTATGGT
1 ATACACTAATTAAGTTCAAGCTTATGGT
*
8036182 -GACACTAATTA
1 ATACACTAATTA
8036193 TAGATTATCA
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
27 10 0.26
28 28 0.74
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.34
Consensus pattern (28 bp):
ATACACTAATTAAGTTCAAGCTTATGGT
Found at i:8039248 original size:3 final size:3
Alignment explanation
Indices: 8039240--8039268 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
8039230 ACCAAATCCC
8039240 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
8039269 AACTCTCTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:8042303 original size:2 final size:2
Alignment explanation
Indices: 8042296--8042329 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
8042286 TAATTTTGCA
*
8042296 AT AT AT AT AT AT CT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8042330 TTCAGCTTGC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8044498 original size:62 final size:62
Alignment explanation
Indices: 8044423--8044629 Score: 407
Period size: 62 Copynumber: 3.4 Consensus size: 62
8044413 TCACTTTAAT
8044423 ATTAAA-TTAATTTAATATTAAATCTTATTAAAATGATAGAATATTTATCTACAAGATAAAC
1 ATTAAATTTAATTTAATATTAAATCTTATTAAAATGATAGAATATTTATCTACAAGATAAAC
8044484 ATTAAATTTAATTTAATATTAAATCTTATTAAAATGATAGAATATTTATCTACAAGATAAAC
1 ATTAAATTTAATTTAATATTAAATCTTATTAAAATGATAGAATATTTATCTACAAGATAAAC
8044546 ATTAAATTTAATTTAATATTAAATCTTATTAAAATGATAGAATATTTATCTACAAGATAAAC
1 ATTAAATTTAATTTAATATTAAATCTTATTAAAATGATAGAATATTTATCTACAAGATAAAC
8044608 ATTAAATTTAATTTAATATTAA
1 ATTAAATTTAATTTAATATTAA
8044630 GATAATCATT
Statistics
Matches: 145, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
61 6 0.04
62 139 0.96
ACGTcount: A:0.49, C:0.06, G:0.04, T:0.41
Consensus pattern (62 bp):
ATTAAATTTAATTTAATATTAAATCTTATTAAAATGATAGAATATTTATCTACAAGATAAAC
Found at i:8048065 original size:9 final size:9
Alignment explanation
Indices: 8048053--8048088 Score: 63
Period size: 9 Copynumber: 4.0 Consensus size: 9
8048043 TAACTTAGCT
*
8048053 AACACTAAG
1 AACAATAAG
8048062 AACAATAAG
1 AACAATAAG
8048071 AACAATAAG
1 AACAATAAG
8048080 AACAATAAG
1 AACAATAAG
8048089 TAAAAGTAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.64, C:0.14, G:0.11, T:0.11
Consensus pattern (9 bp):
AACAATAAG
Found at i:8052459 original size:24 final size:24
Alignment explanation
Indices: 8052432--8052478 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
8052422 AAAGTCAAAT
*
8052432 ATATTATGCTAATAAATGCTAAAA
1 ATATTATACTAATAAATGCTAAAA
* **
8052456 ATATTGTACTCGTAAATGCTAAA
1 ATATTATACTAATAAATGCTAAA
8052479 TCTTCTAGAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.34
Consensus pattern (24 bp):
ATATTATACTAATAAATGCTAAAA
Found at i:8053101 original size:24 final size:24
Alignment explanation
Indices: 8053074--8053120 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
8053064 AAAGTCAAAT
*
8053074 ATATTATGCTAATAAATGCTAAAA
1 ATATTATACTAATAAATGCTAAAA
* **
8053098 ATATTGTACTCGTAAATGCTAAA
1 ATATTATACTAATAAATGCTAAA
8053121 TCTTCTAGAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.34
Consensus pattern (24 bp):
ATATTATACTAATAAATGCTAAAA
Found at i:8055009 original size:13 final size:13
Alignment explanation
Indices: 8054993--8055030 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
8054983 TGTTGTGGAA
8054993 AAGTACTTTTGAG
1 AAGTACTTTTGAG
8055006 AAGTGA-TTTTGAG
1 AAGT-ACTTTTGAG
*
8055019 AAGTGCTTTTGA
1 AAGTACTTTTGA
8055031 AAAATTTGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
13 21 0.95
14 1 0.05
ACGTcount: A:0.29, C:0.05, G:0.26, T:0.39
Consensus pattern (13 bp):
AAGTACTTTTGAG
Found at i:8073913 original size:21 final size:21
Alignment explanation
Indices: 8073877--8073928 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 21
8073867 GTGTATATTG
* *
8073877 ATATATAT-TAT-GAAAATGT
1 ATATATATATATAAAAAAAGT
*
8073896 ATATATGTATATAAAAAAAGT
1 ATATATATATATAAAAAAAGT
*
8073917 ATCTATATATAT
1 ATATATATATAT
8073929 TTATCTAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
19 7 0.27
20 3 0.12
21 16 0.62
ACGTcount: A:0.50, C:0.02, G:0.08, T:0.40
Consensus pattern (21 bp):
ATATATATATATAAAAAAAGT
Found at i:8075841 original size:44 final size:44
Alignment explanation
Indices: 8075746--8076018 Score: 173
Period size: 44 Copynumber: 6.2 Consensus size: 44
8075736 CTACAACTTC
** * * * *
8075746 AGGGAGATAAGATT-GGTGGCTTAAATCTGCTTT-CTACTATCTC
1 AGGGAGATAAGATTCGCAGTCTTCAATCTGCTTTACTACT-GCTT
* * *
8075789 AGGAAGATAAGATTCGCCGTCTTCGATCTGCTTTACTACTGCTT
1 AGGGAGATAAGATTCGCAGTCTTCAATCTGCTTTACTACTGCTT
* * * **
8075833 AGGGAGATAAGA-TCTGCAATCTTCAACCTACTCCACTACTGCTT
1 AGGGAGATAAGATTC-GCAGTCTTCAATCTGCTTTACTACTGCTT
* * * * *
8075877 AGGGAGATAGGATTGGTAG-CTTAAATCTACTTCCTACTAC--CTT
1 AGGGAGATAAGATTCGCAGTCTTCAATCTGCTT--TACTACTGCTT
* * * **
8075920 AGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTT
1 AGGGAGATAAGATTCGCAGTCTTCAATCTGCTTTACTACTGCTT
* * * * * **
8075964 AGGGAGATACGA-TCTGTAATCTTCAACCTACTCCACTACTGCTT
1 AGGGAGATAAGATTC-GCAGTCTTCAATCTGCTTTACTACTGCTT
8076008 AGGGAGATAAG
1 AGGGAGATAAG
8076019 GCTGGTGCTT
Statistics
Matches: 177, Mismatches: 43, Indels: 19
0.74 0.18 0.08
Matches are distributed among these distances:
42 5 0.03
43 44 0.25
44 117 0.66
45 11 0.06
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (44 bp):
AGGGAGATAAGATTCGCAGTCTTCAATCTGCTTTACTACTGCTT
Found at i:8075883 original size:131 final size:131
Alignment explanation
Indices: 8075730--8076018 Score: 461
Period size: 131 Copynumber: 2.2 Consensus size: 131
8075720 ATTTTAATCC
** * * * *
8075730 ACTCCACTACAACTTCAGGGAGATAAGATTGGTGGCTTAAATCTGCTTTCTACTATCTCAGGAAG
1 ACTCCACTACTGCTT-AGGGAGATAAGATTGGTAGCTTAAATCTACTTCCTACTACCTCAGGAAG
**
8075795 ATAAGATTCGCCGTCTTCGATCTGCTTTACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAAC
65 ATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAAC
8075860 CT
130 CT
* *
8075862 ACTCCACTACTGCTTAGGGAGATAGGATTGGTAGCTTAAATCTACTTCCTACTACCTTAGGAAGA
1 ACTCCACTACTGCTTAGGGAGATAAGATTGGTAGCTTAAATCTACTTCCTACTACCTCAGGAAGA
* *
8075927 TAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATACGATCTGTAATCTTCAACC
66 TAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAACC
8075992 T
131 T
8075993 ACTCCACTACTGCTTAGGGAGATAAG
1 ACTCCACTACTGCTTAGGGAGATAAG
8076019 GCTGGTGCTT
Statistics
Matches: 144, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
131 131 0.91
132 13 0.09
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (131 bp):
ACTCCACTACTGCTTAGGGAGATAAGATTGGTAGCTTAAATCTACTTCCTACTACCTCAGGAAGA
TAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAACC
T
Found at i:8076467 original size:24 final size:24
Alignment explanation
Indices: 8076435--8076492 Score: 82
Period size: 24 Copynumber: 2.4 Consensus size: 24
8076425 CGGATTGCCC
8076435 CCACTGTAATCTTCAAAGTTCAA-T
1 CCACTGTAATCTTCAAAGTT-AAGT
*
8076459 CCACTGTAATCTTCAAGGTTAAGT
1 CCACTGTAATCTTCAAAGTTAAGT
*
8076483 CTACTGTAAT
1 CCACTGTAAT
8076493 TTTGGGACAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
23 2 0.06
24 29 0.94
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.34
Consensus pattern (24 bp):
CCACTGTAATCTTCAAAGTTAAGT
Found at i:8077574 original size:17 final size:17
Alignment explanation
Indices: 8077536--8077590 Score: 69
Period size: 17 Copynumber: 3.4 Consensus size: 17
8077526 TGGGCTCTCC
*
8077536 TTTTTC-TTT-TTTTCG
1 TTTTTCTTTTCTTTTCT
*
8077551 TTCTTCTTTTCTTTTCT
1 TTTTTCTTTTCTTTTCT
*
8077568 TTTTTCTTTTCATTTCT
1 TTTTTCTTTTCTTTTCT
8077585 TTTTTC
1 TTTTTC
8077591 AAGTGAAGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
15 5 0.15
16 3 0.09
17 26 0.76
ACGTcount: A:0.02, C:0.18, G:0.02, T:0.78
Consensus pattern (17 bp):
TTTTTCTTTTCTTTTCT
Found at i:8077576 original size:12 final size:12
Alignment explanation
Indices: 8077537--8077578 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
8077527 GGGCTCTCCT
8077537 TTTTCTTTTTT-
1 TTTTCTTTTTTC
*
8077548 TCGTTCTTCTTTTC
1 T-TTTCTT-TTTTC
8077562 TTTTCTTTTTTC
1 TTTTCTTTTTTC
8077574 TTTTC
1 TTTTC
8077579 ATTTCTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
11 1 0.04
12 15 0.58
13 9 0.35
14 1 0.04
ACGTcount: A:0.00, C:0.19, G:0.02, T:0.79
Consensus pattern (12 bp):
TTTTCTTTTTTC
Found at i:8080586 original size:5 final size:5
Alignment explanation
Indices: 8080576--8080605 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
8080566 AAGCAATTAT
8080576 AAACA AAACA AAACA AAACA AAACA AAACA
1 AAACA AAACA AAACA AAACA AAACA AAACA
8080606 GGTTAGTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.80, C:0.20, G:0.00, T:0.00
Consensus pattern (5 bp):
AAACA
Found at i:8083027 original size:21 final size:21
Alignment explanation
Indices: 8082991--8083043 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
8082981 GTGTATATTG
* *
8082991 ATATATAT-TAT-GAAAATGT
1 ATATATATATATAAAAAAAGT
*
8083010 ATATATGTATATAAAAAAAGT
1 ATATATATATATAAAAAAAGT
*
8083031 ATCTATATATATA
1 ATATATATATATA
8083044 TTTATCTAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
19 7 0.26
20 3 0.11
21 17 0.63
ACGTcount: A:0.51, C:0.02, G:0.08, T:0.40
Consensus pattern (21 bp):
ATATATATATATAAAAAAAGT
Found at i:8091363 original size:101 final size:102
Alignment explanation
Indices: 8091239--8091443 Score: 403
Period size: 101 Copynumber: 2.0 Consensus size: 102
8091229 TTATATTTCA
8091239 TATTAAATGATAAAAGAAGATGGTATATTTTATTTATGTTAAATAATAAAAAATAAAATTTTATT
1 TATTAAATGATAAAAGAAGATGGTATATTTTATTTATGTTAAATAATAAAAAATAAAATTTTATT
8091304 AATTAAATTTAAATTTATTTTTCATTATTCAGATATT
66 AATTAAATTTAAATTTATTTTTCATTATTCAGATATT
8091341 TATTAAATGA-AAAAGAAGATGGTATATTTTATTTATGTTAAATAATAAAAAATAAAATTTTATT
1 TATTAAATGATAAAAGAAGATGGTATATTTTATTTATGTTAAATAATAAAAAATAAAATTTTATT
8091405 AATTAAATTTAAATTTATTTTTCATTATTCAGATATT
66 AATTAAATTTAAATTTATTTTTCATTATTCAGATATT
8091442 TA
1 TA
8091444 CTTATTTATG
Statistics
Matches: 103, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
101 93 0.90
102 10 0.10
ACGTcount: A:0.45, C:0.02, G:0.07, T:0.46
Consensus pattern (102 bp):
TATTAAATGATAAAAGAAGATGGTATATTTTATTTATGTTAAATAATAAAAAATAAAATTTTATT
AATTAAATTTAAATTTATTTTTCATTATTCAGATATT
Found at i:8094597 original size:9 final size:9
Alignment explanation
Indices: 8094575--8094611 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
8094565 GGTTTTTGAA
8094575 TTTTAGGG-
1 TTTTAGGGT
8094583 -TTTAGGGT
1 TTTTAGGGT
*
8094591 TTTTAGGAT
1 TTTTAGGGT
8094600 TTTTAGGGT
1 TTTTAGGGT
8094609 TTT
1 TTT
8094612 GGAGAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
7 7 0.28
9 18 0.72
ACGTcount: A:0.14, C:0.00, G:0.30, T:0.57
Consensus pattern (9 bp):
TTTTAGGGT
Found at i:8098064 original size:21 final size:21
Alignment explanation
Indices: 8098031--8098086 Score: 87
Period size: 21 Copynumber: 2.6 Consensus size: 21
8098021 TTATGTGAAT
8098031 GTTTAGGGTTTAGGGTTTTTAA
1 GTTTAGGG-TTAGGGTTTTTAA
8098053 -TTTAAGGGTTAGGGTTTTTAA
1 GTTT-AGGGTTAGGGTTTTTAA
8098074 GTTTAGGGTTAGG
1 GTTTAGGGTTAGG
8098087 TTTAGGGTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
21 25 0.78
22 7 0.22
ACGTcount: A:0.20, C:0.00, G:0.34, T:0.46
Consensus pattern (21 bp):
GTTTAGGGTTAGGGTTTTTAA
Found at i:8098091 original size:12 final size:13
Alignment explanation
Indices: 8098073--8098102 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
8098063 AGGGTTTTTA
8098073 AGTTTAGGGTTAG
1 AGTTTAGGGTTAG
8098086 -GTTTAGGGTTAG
1 AGTTTAGGGTTAG
8098098 AGTTT
1 AGTTT
8098103 TTAAGTTAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.20, C:0.00, G:0.37, T:0.43
Consensus pattern (13 bp):
AGTTTAGGGTTAG
Found at i:8099123 original size:192 final size:191
Alignment explanation
Indices: 8098839--8099206 Score: 456
Period size: 192 Copynumber: 1.9 Consensus size: 191
8098829 CCCAAGCTTG
* * * *
8098839 GTCTATTATGTTCATTAACATCATAAAAAATCATCAATTACATCCTAATAACAATTTCAACTCCA
1 GTCTATTATATTCATTAACATCATAAAAAAACATCAATTACATCCTAATAACAATTCCAACCCCA
* * * * * * **
8098904 AAATTTACTAAAGAAGCTTTGCAGGATATGA-AAACACAAGTGCATTTCCATTCAAGTAAATTCT
66 AAATTAACTAAAGAAACATTACAGGATA-CACAAACACAAATGCATTTCCATTCAAGT-AATAAT
* * *
8098968 TGTGTTGTAATCACAAAG-TTCAAATGAAAACCATGACTTGAACCCATAAAAAATTCAACTTA
129 AGTGTTGTAATCACAAAGCTCCAAATGAAAACCATGACTTAAACCCATAAAAAATTCAACTTA
* * *
8099030 GTCTATTGTATTCATTAACATCA-ACATAAAAACATCAATTACTTTCTAATAACAATTCCAACCC
1 GTCTATTATATTCATTAACATCATA-A-AAAAACATCAATTACATCCTAATAACAATTCCAACCC
* * **
8099094 CAAAGTTCAATTAAA-AAACATTACAGGATACACAAATGCAAATGCATTTCCATTCAAGTAATAA
64 CAAAATT-AACTAAAGAAACATTACAGGATACACAAACACAAATGCATTTCCATTCAAGTAATAA
*
8099158 TAGTGTTTTAATCACAAAGCTCCAAATGAAAACCATGACTTAAACCCAT
128 TAGTGTTGTAATCACAAAGCTCCAAATGAAAACCATGACTTAAACCCAT
8099207 TATAGATTAC
Statistics
Matches: 149, Mismatches: 23, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
190 1 0.01
191 43 0.29
192 100 0.67
193 5 0.03
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.29
Consensus pattern (191 bp):
GTCTATTATATTCATTAACATCATAAAAAAACATCAATTACATCCTAATAACAATTCCAACCCCA
AAATTAACTAAAGAAACATTACAGGATACACAAACACAAATGCATTTCCATTCAAGTAATAATAG
TGTTGTAATCACAAAGCTCCAAATGAAAACCATGACTTAAACCCATAAAAAATTCAACTTA
Found at i:8100155 original size:7 final size:7
Alignment explanation
Indices: 8100145--8100170 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
8100135 TTATATACAC
8100145 AATACTA
1 AATACTA
8100152 AATACTA
1 AATACTA
8100159 AATACTA
1 AATACTA
8100166 AATAC
1 AATAC
8100171 CAATCGACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:8101362 original size:22 final size:22
Alignment explanation
Indices: 8101336--8101404 Score: 72
Period size: 22 Copynumber: 3.1 Consensus size: 22
8101326 GAATAAATAT
8101336 GAATTTTAGAGAAATTTG-GAAG
1 GAATTTTAGAGAAATTTGAG-AG
*
8101358 GAATTTGAGAGCAAA-TTGAGAG
1 GAATTTTAGAG-AAATTTGAGAG
*
8101380 GAAATTTAGAGGAAA-TTGAGAG
1 GAATTTTAGA-GAAATTTGAGAG
8101402 GAA
1 GAA
8101405 ATTTGGGAGA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
22 36 0.88
23 5 0.12
ACGTcount: A:0.43, C:0.01, G:0.30, T:0.25
Consensus pattern (22 bp):
GAATTTTAGAGAAATTTGAGAG
Found at i:8101376 original size:11 final size:11
Alignment explanation
Indices: 8101356--8101407 Score: 77
Period size: 11 Copynumber: 4.7 Consensus size: 11
8101346 GAAATTTGGA
*
8101356 AGGAATTTGAG
1 AGGAAATTGAG
*
8101367 AGCAAATTGAG
1 AGGAAATTGAG
*
8101378 AGGAAATTTAG
1 AGGAAATTGAG
8101389 AGGAAATTGAG
1 AGGAAATTGAG
8101400 AGGAAATT
1 AGGAAATT
8101408 TGGGAGAGGA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 36 1.00
ACGTcount: A:0.44, C:0.02, G:0.31, T:0.23
Consensus pattern (11 bp):
AGGAAATTGAG
Found at i:8101405 original size:22 final size:23
Alignment explanation
Indices: 8101359--8101409 Score: 86
Period size: 22 Copynumber: 2.3 Consensus size: 23
8101349 ATTTGGAAGG
8101359 AATTTGAGAGCAAATTGAGAGGA
1 AATTTGAGAGCAAATTGAGAGGA
*
8101382 AATTT-AGAGGAAATTGAGAGGA
1 AATTTGAGAGCAAATTGAGAGGA
8101404 AATTTG
1 AATTTG
8101410 GGAGAGGATT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 21 0.81
23 5 0.19
ACGTcount: A:0.43, C:0.02, G:0.29, T:0.25
Consensus pattern (23 bp):
AATTTGAGAGCAAATTGAGAGGA
Found at i:8105969 original size:31 final size:31
Alignment explanation
Indices: 8105934--8105995 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
8105924 TTGCTGACAA
*
8105934 TGCATCCTGGTTGAAACGTTTTTGACATTAT
1 TGCATCCTGCTTGAAACGTTTTTGACATTAT
*
8105965 TGCATCCTGCTTGAAGCGTTTTTGACATTAT
1 TGCATCCTGCTTGAAACGTTTTTGACATTAT
8105996 CTTTTTAGGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.21, C:0.18, G:0.19, T:0.42
Consensus pattern (31 bp):
TGCATCCTGCTTGAAACGTTTTTGACATTAT
Found at i:8106250 original size:34 final size:34
Alignment explanation
Indices: 8106134--8106242 Score: 159
Period size: 34 Copynumber: 3.2 Consensus size: 34
8106124 TTTTTTTAAA
8106134 CTAAACCCTAATTTAATTAATTTTCTT-AAAAACT
1 CTAAACCCTAATTTAATTAATTTT-TTAAAAAACT
**
8106168 CTAAACCCTAATTTAATTAATTTATTTAAAACCCT
1 CTAAACCCTAATTTAATTAATTT-TTTAAAAAACT
*
8106203 -TAAAACCTAATTTAATTAATTTTTTAAAAAACT
1 CTAAACCCTAATTTAATTAATTTTTTAAAAAACT
8106236 CTAAACC
1 CTAAACC
8106243 ATGATTTATT
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
33 9 0.14
34 51 0.77
35 6 0.09
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.39
Consensus pattern (34 bp):
CTAAACCCTAATTTAATTAATTTTTTAAAAAACT
Found at i:8107653 original size:12 final size:12
Alignment explanation
Indices: 8107621--8107653 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
8107611 AAGAATTAAT
*
8107621 AATAAATAAGTG
1 AATAAATATGTG
8107633 AATAAATATGTG
1 AATAAATATGTG
8107645 AATAAATAT
1 AATAAATAT
8107654 AAAATGGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.58, C:0.00, G:0.12, T:0.30
Consensus pattern (12 bp):
AATAAATATGTG
Found at i:8112899 original size:43 final size:44
Alignment explanation
Indices: 8112810--8112924 Score: 123
Period size: 43 Copynumber: 2.7 Consensus size: 44
8112800 AAATTGTACA
* * * *
8112810 ATGCCAACGTCCCAGACATGGTCTTACA-TGTAATCACATATTG
1 ATGCCAACGTCCCAGACAGGGTCTTACACTGCAAACACATATCG
8112853 ATGCC-ACTGTCCCAGACAGGGTCTTACACT-CAAACACA-AGTCG
1 ATGCCAAC-GTCCCAGACAGGGTCTTACACTGCAAACACATA-TCG
*
8112896 ATGCCAACGTCCAAGAC-GTGGTCTTACAC
1 ATGCCAACGTCCCAGACAG-GGTCTTACAC
8112925 GATAACGCAT
Statistics
Matches: 62, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
42 4 0.06
43 55 0.89
44 3 0.05
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.23
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACAGGGTCTTACACTGCAAACACATATCG
Found at i:8119375 original size:14 final size:15
Alignment explanation
Indices: 8119356--8119385 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
8119346 TCATGAAACT
8119356 TTCACACAT-ATAAA
1 TTCACACATAATAAA
8119370 TTCACACATAATAAA
1 TTCACACATAATAAA
8119385 T
1 T
8119386 ACATAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:8119709 original size:44 final size:44
Alignment explanation
Indices: 8119658--8119815 Score: 239
Period size: 44 Copynumber: 3.6 Consensus size: 44
8119648 GTGCTCAACA
*
8119658 GAAACCCATAAGGGTTAAACGGAAGCTCATAAAAGAGCTGAACG
1 GAAACCCATAAGGGTTAAACAGAAGCTCATAAAAGAGCTGAACG
* **
8119702 AAAACCCATAAGGGTTAAATGGAAGCTCATAAAAGAGCTGAACG
1 GAAACCCATAAGGGTTAAACAGAAGCTCATAAAAGAGCTGAACG
8119746 GAAACCCATAAGGGTTAAACAGAAGCTC--AAAAGAGCTGAACG
1 GAAACCCATAAGGGTTAAACAGAAGCTCATAAAAGAGCTGAACG
* * *
8119788 GAAACTCATATGAGTTAAACAGAAGCTC
1 GAAACCCATAAGGGTTAAACAGAAGCTC
8119816 GTGAGAGCTA
Statistics
Matches: 106, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
42 39 0.37
44 67 0.63
ACGTcount: A:0.44, C:0.18, G:0.23, T:0.15
Consensus pattern (44 bp):
GAAACCCATAAGGGTTAAACAGAAGCTCATAAAAGAGCTGAACG
Found at i:8119711 original size:23 final size:23
Alignment explanation
Indices: 8119675--8119756 Score: 69
Period size: 23 Copynumber: 3.7 Consensus size: 23
8119665 ATAAGGGTTA
* *
8119675 AACGGAAGCTCATAAAAGAGCTG
1 AACGGAAACCCATAAAAGAGCTG
* * * *
8119698 AACGAAAACCCAT--AAGGGTTA
1 AACGGAAACCCATAAAAGAGCTG
* * *
8119719 AATGGAAGCTCATAAAAGAGCTG
1 AACGGAAACCCATAAAAGAGCTG
8119742 AACGGAAACCCATAA
1 AACGGAAACCCATAA
8119757 GGGTTAAACA
Statistics
Matches: 41, Mismatches: 16, Indels: 4
0.67 0.26 0.07
Matches are distributed among these distances:
21 14 0.34
23 27 0.66
ACGTcount: A:0.46, C:0.18, G:0.22, T:0.13
Consensus pattern (23 bp):
AACGGAAACCCATAAAAGAGCTG
Found at i:8119823 original size:42 final size:42
Alignment explanation
Indices: 8119658--8119833 Score: 199
Period size: 44 Copynumber: 4.1 Consensus size: 42
8119648 GTGCTCAACA
* *
8119658 GAAACCCATAAGGGTTAAACGGAAGCTCATAAAAGAGCTGAACG
1 GAAACCCATAAGAGTTAAACAGAAGCTC--AAAAGAGCTGAACG
* * **
8119702 AAAACCCATAAGGGTTAAATGGAAGCTCATAAAAGAGCTGAACG
1 GAAACCCATAAGAGTTAAACAGAAGCTC--AAAAGAGCTGAACG
*
8119746 GAAACCCATAAGGGTTAAACAGAAGCTCAAAAGAGCTGAACG
1 GAAACCCATAAGAGTTAAACAGAAGCTCAAAAGAGCTGAACG
* * *** *
8119788 GAAACTCATATGAGTTAAACAGAAGCTCGTGAGAGCTAAACG
1 GAAACCCATAAGAGTTAAACAGAAGCTCAAAAGAGCTGAACG
8119830 GAAA
1 GAAA
8119834 GTAAACACGA
Statistics
Matches: 120, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
42 53 0.44
44 67 0.56
ACGTcount: A:0.44, C:0.17, G:0.24, T:0.15
Consensus pattern (42 bp):
GAAACCCATAAGAGTTAAACAGAAGCTCAAAAGAGCTGAACG
Found at i:8121579 original size:12 final size:12
Alignment explanation
Indices: 8121562--8121591 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
8121552 ACAAAATTCA
8121562 AATTTAATTTCC
1 AATTTAATTTCC
*
8121574 AATTTAATTTCT
1 AATTTAATTTCC
8121586 AATTTA
1 AATTTA
8121592 TTTAATTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.53
Consensus pattern (12 bp):
AATTTAATTTCC
Found at i:8130041 original size:39 final size:40
Alignment explanation
Indices: 8129998--8130102 Score: 113
Period size: 44 Copynumber: 2.5 Consensus size: 40
8129988 TTCCATTATG
8129998 CTATTACACCTCTATTCCATTCAACCAAACACAAGA-TTA
1 CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
* *** *
8130037 CTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATTTG
1 CTATTACACCTCTATT-C----CATTCAACCAAACACAAGATTTA
8130082 CTATTACACCTCTATTCCATT
1 CTATTACACCTCTATTCCATT
8130103 ACACCTCTAA
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
39 15 0.28
40 5 0.09
44 17 0.31
45 17 0.31
ACGTcount: A:0.31, C:0.30, G:0.05, T:0.34
Consensus pattern (40 bp):
CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
Found at i:8130096 original size:45 final size:44
Alignment explanation
Indices: 8129996--8130105 Score: 131
Period size: 45 Copynumber: 2.6 Consensus size: 44
8129986 TTTTCCATTA
8129996 TGCTATTACACCTCTATT-C----CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
* * ***
8130035 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGA-T
8130080 TGCTATTACACCTCTATTCCATTACA
1 TGCTATTACACCTCTATTCCATTACA
8130106 CCTCTAATCC
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
44 16 0.28
45 25 0.43
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (44 bp):
TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
Found at i:8130105 original size:16 final size:16
Alignment explanation
Indices: 8130086--8130137 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
8130076 GATTTGCTAT
* *
8130086 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
8130102 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
8130118 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
8130134 TACA
1 TACA
8130138 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:8133917 original size:10 final size:10
Alignment explanation
Indices: 8133902--8133926 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
8133892 TTATTTTAAC
8133902 TTTTTATTTA
1 TTTTTATTTA
8133912 TTTTTATTTA
1 TTTTTATTTA
8133922 TTTTT
1 TTTTT
8133927 TTAGTCTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (10 bp):
TTTTTATTTA
Found at i:8142651 original size:45 final size:44
Alignment explanation
Indices: 8142570--8142660 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 44
8142560 NNNNNNATTC
*
8142570 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACACCTCTATTCCATTA
*** *
8142614 CATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCCATTA
1 CATTCAACCAAACACAAGA-TTACTATTACACCTCTATTCCATTA
8142659 CA
1 CA
8142661 CCTCTATTCC
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
44 16 0.39
45 25 0.61
ACGTcount: A:0.34, C:0.29, G:0.05, T:0.32
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACACCTCTATTCCATTA
Found at i:8142660 original size:16 final size:16
Alignment explanation
Indices: 8142639--8142708 Score: 104
Period size: 16 Copynumber: 4.4 Consensus size: 16
8142629 TTGATTTGCT
*
8142639 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
*
8142655 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
8142671 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
*
8142687 AATACACCTCTAATCC
1 ATTACACCTCTAATCC
*
8142703 AATACA
1 ATTACA
8142709 GCGAACCAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 52 1.00
ACGTcount: A:0.33, C:0.36, G:0.00, T:0.31
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:8143262 original size:22 final size:22
Alignment explanation
Indices: 8143234--8143278 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
8143224 AAATAAGTTG
*
8143234 TTTTGTTGTTATTTCGCTATTA
1 TTTTGTTGTCATTTCGCTATTA
*
8143256 TTTTGTTGTCATTTTGCTATTA
1 TTTTGTTGTCATTTCGCTATTA
8143278 T
1 T
8143279 ATTACTACTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.13, C:0.09, G:0.13, T:0.64
Consensus pattern (22 bp):
TTTTGTTGTCATTTCGCTATTA
Found at i:8143532 original size:30 final size:31
Alignment explanation
Indices: 8143498--8143555 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
8143488 TTATTTTATG
8143498 TAAAAATAA-TCTT-AAAAAATAATACAAATT
1 TAAAAATAACT-TTAAAAAAATAATACAAATT
8143528 TAAAAATAACTTTAAAAAAATAATACAA
1 TAAAAATAACTTTAAAAAAATAATACAA
8143556 GTGAGTCGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
30 11 0.42
31 15 0.58
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.28
Consensus pattern (31 bp):
TAAAAATAACTTTAAAAAAATAATACAAATT
Found at i:8145594 original size:21 final size:22
Alignment explanation
Indices: 8145523--8145596 Score: 80
Period size: 21 Copynumber: 3.4 Consensus size: 22
8145513 GATTGGATTT
* *
8145523 TTAATTTTTTTATTGCATTATA
1 TTAATTTTTTTATTGTAGTATA
*
8145545 TTAA-TTTGTTATTGTAGTTATA
1 TTAATTTTTTTATTGTAG-TATA
* *
8145567 TTGATTTTTTTACTGTAGT-TA
1 TTAATTTTTTTATTGTAGTATA
8145588 TTAATTTTT
1 TTAATTTTT
8145597 GTATGGTTAA
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
21 20 0.47
22 12 0.28
23 11 0.26
ACGTcount: A:0.24, C:0.03, G:0.09, T:0.64
Consensus pattern (22 bp):
TTAATTTTTTTATTGTAGTATA
Found at i:8152568 original size:28 final size:27
Alignment explanation
Indices: 8152511--8152569 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 27
8152501 AAACCCTTTT
* *
8152511 TTTTTTAAATTTACCGAAATAGGTCGG
1 TTTTTTAAATTTACCGAAATAGGGCCG
*
8152538 TTTTTTAATTATTTACCGGAAT-GGGCCG
1 TTTTTTAA--ATTTACCGAAATAGGGCCG
8152566 TTTT
1 TTTT
8152570 CCCCAAAATC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 8 0.30
28 8 0.30
29 11 0.41
ACGTcount: A:0.24, C:0.12, G:0.19, T:0.46
Consensus pattern (27 bp):
TTTTTTAAATTTACCGAAATAGGGCCG
Found at i:8154194 original size:3 final size:3
Alignment explanation
Indices: 8154181--8154241 Score: 115
Period size: 3 Copynumber: 20.7 Consensus size: 3
8154171 TTAGTAATTC
8154181 TAT TAT T-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8154228 TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TA
8154242 CTATATTTGT
Statistics
Matches: 57, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 2 0.04
3 55 0.96
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:8154257 original size:15 final size:15
Alignment explanation
Indices: 8154239--8154267 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8154229 ATTATTATTA
8154239 TTACTATATTTGTTC
1 TTACTATATTTGTTC
8154254 TTACTATATTTGTT
1 TTACTATATTTGTT
8154268 AGTATTATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.10, G:0.07, T:0.62
Consensus pattern (15 bp):
TTACTATATTTGTTC
Found at i:8154290 original size:15 final size:14
Alignment explanation
Indices: 8154270--8154301 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
8154260 TATTTGTTAG
8154270 TATTATTACTAATAT
1 TATTATTACTAAT-T
8154285 TATTATTACTAATT
1 TATTATTACTAATT
8154299 TAT
1 TAT
8154302 ATTTACACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (14 bp):
TATTATTACTAATT
Found at i:8165279 original size:122 final size:111
Alignment explanation
Indices: 8165063--8165390 Score: 394
Period size: 122 Copynumber: 2.9 Consensus size: 111
8165053 TTTTTTCTTC
* *
8165063 AAAATAAGGCAATATTTAGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGAT
1 AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGAT
*
8165128 TTTTCTCGCTTAACCAAATGGCTTAATATCCTTTAAAAAATTTTAAAATAATTTT
66 TTTTCTCGCTTAACCAAATGGCTAAATATCCTTT--AAAA----AAAA-AA--TT
8165183 AAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCG
1 -AAAATAAGGCAATGTTTTGCGTTT-GGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCG
*
8165248 ATTTTTCTCG-TTCAACCAAATGGCTAAATATCCTTTTAAAAAAAAATT
64 ATTTTTCTCGCTT-AACCAAATGGCTAAATATCCTTTAAAAAAAAAATT
* ** * * *
8165296 GAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAG-GGACGTGTCCTAAGGTGCTGGATTTCGA-
1 AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGAT
* * *
8165359 -TTTCTCGTTTAAACCAAATTGCCAAATATCCT
66 TTTTCTCGCTT-AACCAAATGGCTAAATATCCT
8165391 CTTGAATTTT
Statistics
Matches: 191, Mismatches: 13, Indels: 18
0.86 0.06 0.08
Matches are distributed among these distances:
108 7 0.04
109 21 0.11
110 23 0.12
111 11 0.06
112 23 0.12
113 2 0.01
115 2 0.01
116 4 0.02
120 3 0.02
121 24 0.13
122 71 0.37
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33
Consensus pattern (111 bp):
AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGAT
TTTTCTCGCTTAACCAAATGGCTAAATATCCTTTAAAAAAAAAATT
Found at i:8166456 original size:21 final size:21
Alignment explanation
Indices: 8166421--8166460 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
8166411 GTTTAGAGAT
*
8166421 TTTTTGAAGGAAATTGTGAGGA
1 TTTTGGAAGGAAATT-TGAGGA
8166443 TTTTGGAAGG-AATTTGAG
1 TTTTGGAAGGAAATTTGAG
8166461 AGTTTAAGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 4 0.24
22 9 0.53
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.38
Consensus pattern (21 bp):
TTTTGGAAGGAAATTTGAGGA
Found at i:8166835 original size:29 final size:26
Alignment explanation
Indices: 8166787--8166846 Score: 68
Period size: 29 Copynumber: 2.2 Consensus size: 26
8166777 CGATTTCGGG
8166787 AAAAACGGCCCATTCTGGTAAATAATTA
1 AAAAACGGCCCATTCTGGTAAAT--TTA
*
8166815 AAAAACCGGCCTATT-TCGGTAAATTTA
1 AAAAA-CGGCCCATTCT-GGTAAATTTA
8166842 AAAAA
1 AAAAA
8166847 AGGGCCTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
27 8 0.28
28 6 0.21
29 15 0.52
ACGTcount: A:0.45, C:0.17, G:0.13, T:0.25
Consensus pattern (26 bp):
AAAAACGGCCCATTCTGGTAAATTTA
Found at i:8167045 original size:21 final size:23
Alignment explanation
Indices: 8167021--8167068 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 23
8167011 TTAATAATTT
*
8167021 TATAAATT-TATTAA-TTAATAA
1 TATAAATTATATCAATTTAATAA
8167042 TAT--ATTATATCAATTTAATAA
1 TATAAATTATATCAATTTAATAA
8167063 TATAAA
1 TATAAA
8167069 GAATAATAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 6
0.76 0.03 0.21
Matches are distributed among these distances:
19 3 0.14
20 5 0.23
21 13 0.59
23 1 0.05
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (23 bp):
TATAAATTATATCAATTTAATAA
Found at i:8168007 original size:3 final size:3
Alignment explanation
Indices: 8167999--8168027 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
8167989 AATCCAAACA
8167999 GCT GCT GCT GCT GCT GCT GCT GCT GCT GC
1 GCT GCT GCT GCT GCT GCT GCT GCT GCT GC
8168028 ACTGCACAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.34, G:0.34, T:0.31
Consensus pattern (3 bp):
GCT
Found at i:8176606 original size:20 final size:20
Alignment explanation
Indices: 8176581--8176631 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
8176571 ATGTCAGTCC
* *
8176581 TATGAATAGTGGAGTCAAAT
1 TATGAACAGTGGAATCAAAT
*
8176601 TATGAACAGTGGAATCAAGT
1 TATGAACAGTGGAATCAAAT
*
8176621 TATAAACAGTG
1 TATGAACAGTG
8176632 ATAACATGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.41, C:0.08, G:0.24, T:0.27
Consensus pattern (20 bp):
TATGAACAGTGGAATCAAAT
Found at i:8177000 original size:54 final size:54
Alignment explanation
Indices: 8176940--8177104 Score: 156
Period size: 54 Copynumber: 3.3 Consensus size: 54
8176930 CACAGCTTGC
8176940 GACACGGTCGTGTGTCTTAAGTCAATATGTAACATGGTCTGGCAAACGGTCTAT
1 GACACGGTCGTGTGTCTTAAGTCAATATGTAACATGGTCTGGCAAACGGTCTAT
* ** * * * **
8176994 GACACGGTCGTGTGACCCAA--C-AT-CG--A-AT-G-C--ACACACGG-CTTGC
1 GACACGGTCGTGTGTCTTAAGTCAATATGTAACATGGTCTGGCAAACGGTC-TAT
8177037 GACACGGTCGTGTGTCTTAAGTCAATATGTAACATGGTCTGGCAAACGGTCTAT
1 GACACGGTCGTGTGTCTTAAGTCAATATGTAACATGGTCTGGCAAACGGTCTAT
*
8177091 GACACGGTCATGTG
1 GACACGGTCGTGTG
8177105 ACCCAACATC
Statistics
Matches: 81, Mismatches: 17, Indels: 26
0.65 0.14 0.21
Matches are distributed among these distances:
42 1 0.01
43 24 0.30
45 2 0.02
46 3 0.04
47 3 0.04
48 1 0.01
49 1 0.01
50 3 0.04
51 3 0.04
52 2 0.02
54 37 0.46
55 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (54 bp):
GACACGGTCGTGTGTCTTAAGTCAATATGTAACATGGTCTGGCAAACGGTCTAT
Found at i:8177105 original size:97 final size:97
Alignment explanation
Indices: 8176929--8177147 Score: 393
Period size: 97 Copynumber: 2.3 Consensus size: 97
8176919 ATGGTCTAAG
*
8176929 ACACAGCTTGCGACACGGTCGTGTGTCTTAAGTCAATATGTAACATGGTCTGGCAAACGGTCTAT
1 ACACGGCTTGCGACACGGTCGTGTGTCTTAAGTCAATATGTAACATGGTCTGGCAAACGGTCTAT
*
8176994 GACACGGTCGTGTGACCCAACATCGAATGCAC
66 GACACGGTCATGTGACCCAACATCGAATGCAC
8177026 ACACGGCTTGCGACACGGTCGTGTGTCTTAAGTCAATATGTAACATGGTCTGGCAAACGGTCTAT
1 ACACGGCTTGCGACACGGTCGTGTGTCTTAAGTCAATATGTAACATGGTCTGGCAAACGGTCTAT
8177091 GACACGGTCATGTGACCCAACATCGAATGCAC
66 GACACGGTCATGTGACCCAACATCGAATGCAC
* * *
8177123 ATAGGGCTTGCGACACAGTCGTGTG
1 ACACGGCTTGCGACACGGTCGTGTG
8177148 ACCCTATTTT
Statistics
Matches: 117, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
97 117 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (97 bp):
ACACGGCTTGCGACACGGTCGTGTGTCTTAAGTCAATATGTAACATGGTCTGGCAAACGGTCTAT
GACACGGTCATGTGACCCAACATCGAATGCAC
Found at i:8197663 original size:98 final size:98
Alignment explanation
Indices: 8197539--8197719 Score: 317
Period size: 98 Copynumber: 1.8 Consensus size: 98
8197529 TCCGATTCTG
*
8197539 AGTTTGAGATTCTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTTAAATCTTGGATAAG
1 AGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTTAAATCTTGGATAAG
8197604 TGGATGTTCTTTTAAAGTAAAGGAAATATTCCA
66 TGGATGTTCTTTTAAAGTAAAGGAAATATTCCA
* * * *
8197637 AGTTTGGGATTCTAAAGGGATCGTGCCCTAACGTATTGGGTGTGGTTTCTTAAATCTTGGATGAG
1 AGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTTAAATCTTGGATAAG
8197702 TGGATGTTCTTTTAAAGT
66 TGGATGTTCTTTTAAAGT
8197720 TTTATTGTTT
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 78 1.00
ACGTcount: A:0.27, C:0.10, G:0.25, T:0.38
Consensus pattern (98 bp):
AGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTTAAATCTTGGATAAG
TGGATGTTCTTTTAAAGTAAAGGAAATATTCCA
Found at i:8199711 original size:25 final size:25
Alignment explanation
Indices: 8199663--8199711 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
8199653 TATATTTGAT
* *
8199663 AAATTGAAAAATTAAGTATTAAAAA
1 AAATTGAAAAAATAAGTATGAAAAA
*
8199688 AAATT-AAAAAATAAGTATGGAAAA
1 AAATTGAAAAAATAAGTATGAAAAA
8199712 TTAAGTGTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 16 0.76
25 5 0.24
ACGTcount: A:0.65, C:0.00, G:0.10, T:0.24
Consensus pattern (25 bp):
AAATTGAAAAAATAAGTATGAAAAA
Found at i:8204689 original size:27 final size:27
Alignment explanation
Indices: 8204668--8204742 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
8204658 CTTCATGCTT
* *
8204668 CACCACAAAGGCGTTCTTTTCATATTA
1 CACCACAAAGACGTTCATTTCATATTA
*
8204695 CGCCACAAAGACGTTCATTTCATAATT-
1 CACCACAAAGACGTTCATTTCAT-ATTA
** *
8204722 TGCCACAAAGACGTTCCTTTC
1 CACCACAAAGACGTTCATTTC
8204743 CTGACGTGTT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
27 39 0.93
28 3 0.07
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (27 bp):
CACCACAAAGACGTTCATTTCATATTA
Found at i:8210185 original size:2 final size:2
Alignment explanation
Indices: 8210178--8210205 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8210168 AATAACATGG
8210178 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8210206 TCTACATTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8213389 original size:21 final size:21
Alignment explanation
Indices: 8213364--8213407 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
8213354 AAAAGGCATG
*
8213364 GATGACGACAATGAAGATGAT
1 GATGACGACAACGAAGATGAT
*
8213385 GATGACGACGACGAAGATGAT
1 GATGACGACAACGAAGATGAT
8213406 GA
1 GA
8213408 CTTGCTTGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.41, C:0.11, G:0.32, T:0.16
Consensus pattern (21 bp):
GATGACGACAACGAAGATGAT
Found at i:8222203 original size:33 final size:31
Alignment explanation
Indices: 8222156--8222261 Score: 95
Period size: 34 Copynumber: 3.2 Consensus size: 31
8222146 CTAAACACAA
*
8222156 AATTATTTTAAAAAAACTAAACCATAATTTAATT
1 AATT-TTTT-AAAAACCTAAACC-TAATTTAATT
*
8222190 AATTTTCTTAAAAACCCTAATTCCTAATTTAATT
1 AATTTT-TTAAAAA-CCTAA-ACCTAATTTAATT
* * *
8222224 AATATATTTAAAACCCAAAAACCTAATTTAATT
1 AAT-TTTTTAAAAACC-TAAACCTAATTTAATT
8222257 AATTT
1 AATTT
8222262 AAAAAAACAA
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
32 1 0.02
33 24 0.40
34 31 0.52
35 4 0.07
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (31 bp):
AATTTTTTAAAAACCTAAACCTAATTTAATT
Found at i:8222218 original size:34 final size:32
Alignment explanation
Indices: 8222174--8222261 Score: 104
Period size: 33 Copynumber: 2.6 Consensus size: 32
8222164 TAAAAAAACT
*
8222174 AAACCATAATTTAATTAATTTTCTTAAAAACCCTA
1 AAACC-TAATTTAATTAATTTT-TT-AAAACCCAA
** *
8222209 ATTCCTAATTTAATTAATATATTTAAAACCCAA
1 AAACCTAATTTAATTAAT-TTTTTAAAACCCAA
8222242 AAACCTAATTTAATTAATTT
1 AAACCTAATTTAATTAATTT
8222262 AAAAAAACAA
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
32 1 0.02
33 24 0.53
34 15 0.33
35 5 0.11
ACGTcount: A:0.45, C:0.15, G:0.00, T:0.40
Consensus pattern (32 bp):
AAACCTAATTTAATTAATTTTTTAAAACCCAA
Found at i:8222310 original size:46 final size:45
Alignment explanation
Indices: 8222253--8222345 Score: 111
Period size: 46 Copynumber: 2.0 Consensus size: 45
8222243 AACCTAATTT
8222253 AATTAATTTAAA-AAAA-C-AATAAATCCTAAATCTACTAAAAACCCTA
1 AATTAATTTAAACAAAACCTAA-AAATCCTAAA-CTA--AAAAACCCTA
*
8222299 AATTATTTTAAACAAAACCCTAAAAATCCTAAACTAAAAAACCCTA
1 AATTAATTTAAACAAAA-CCTAAAAATCCTAAACTAAAAAACCCTA
8222345 A
1 A
8222346 GGACTAAACA
Statistics
Matches: 42, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
46 22 0.52
47 4 0.10
48 3 0.07
49 11 0.26
50 2 0.05
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.25
Consensus pattern (45 bp):
AATTAATTTAAACAAAACCTAAAAATCCTAAACTAAAAAACCCTA
Found at i:8229935 original size:25 final size:28
Alignment explanation
Indices: 8229882--8229938 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 28
8229872 ATGATTAAGC
8229882 TACAAAATAAAAGAGTGATTGTGAATTAT
1 TACAAAATAAAAGAGTGATTGTG-ATTAT
*
8229911 TACAAAATAAAAGAGTGATTGTTATTAT
1 TACAAAATAAAAGAGTGATTGTGATTAT
8229939 AACTAGCAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 5 0.19
29 22 0.81
ACGTcount: A:0.47, C:0.04, G:0.16, T:0.33
Consensus pattern (28 bp):
TACAAAATAAAAGAGTGATTGTGATTAT
Found at i:8249214 original size:96 final size:96
Alignment explanation
Indices: 8249042--8251295 Score: 4348
Period size: 96 Copynumber: 23.4 Consensus size: 96
8249032 GTAACCATAG
*
8249042 ATTGTAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
* * *
8249107 TTGAAGTTACAACAGCGAGTCTCACTTCCCT
66 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
8249138 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
8249203 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
66 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
8249234 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
8249299 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
66 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
8249330 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
8249395 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
66 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
8249426 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
8249491 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
66 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
8249522 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
8249587 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
66 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
8249618 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
8249683 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
66 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
8249714 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
8249779 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
66 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
8249810 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
8249875 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
66 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
8249906 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
8249971 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
66 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
8250002 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
8250067 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
66 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
8250098 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
8250163 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
66 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
8250194 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
8250259 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
66 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
8250290 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
8250355 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
66 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
8250386 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
8250451 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
66 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
8250482 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
8250547 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
66 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
8250578 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
8250643 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
66 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
8250674 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
8250739 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
66 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
8250770 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
8250835 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
66 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
8250866 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
8250931 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
66 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
8250962 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
8251027 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
66 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
8251058 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
8251123 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
66 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
8251154 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
* * *
8251219 TTGAAGCTACAACAGCG-GATCTTACTCCCCTAAC
66 TTGAAGCTACAACGGCGAG-TCTCACTTCCC---C
* * * * **
8251253 ATTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTT
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTT
8251296 CCCAGGTGAC
Statistics
Matches: 2141, Mismatches: 13, Indels: 5
0.99 0.01 0.00
Matches are distributed among these distances:
95 1 0.00
96 2102 0.98
99 38 0.02
ACGTcount: A:0.33, C:0.26, G:0.21, T:0.21
Consensus pattern (96 bp):
ATTGCAATTTAAAAGATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
TTGAAGCTACAACGGCGAGTCTCACTTCCCC
Found at i:8253528 original size:15 final size:15
Alignment explanation
Indices: 8253508--8253538 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8253498 GTGGCCCCAA
8253508 AACGGCGTCGCATGG
1 AACGGCGTCGCATGG
*
8253523 AACGGCGTCGTATGG
1 AACGGCGTCGCATGG
8253538 A
1 A
8253539 GGCTGACCCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.23, G:0.39, T:0.16
Consensus pattern (15 bp):
AACGGCGTCGCATGG
Found at i:8257935 original size:16 final size:16
Alignment explanation
Indices: 8257914--8257945 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8257904 TCTGGTAGAG
*
8257914 ACAAATTACGAAACAC
1 ACAAATTACCAAACAC
8257930 ACAAATTACCAAACAC
1 ACAAATTACCAAACAC
8257946 GCTTTCGGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.56, C:0.28, G:0.03, T:0.12
Consensus pattern (16 bp):
ACAAATTACCAAACAC
Found at i:8270635 original size:24 final size:24
Alignment explanation
Indices: 8270607--8270672 Score: 73
Period size: 26 Copynumber: 2.7 Consensus size: 24
8270597 TCCTCTTTTA
8270607 AGCCATAACAGGAAGCTCACAAAG
1 AGCCATAACAGGAAGCTCACAAAG
8270631 AGCCATTAATC-GGTAAGCTCACAAAG
1 AGCCA-TAA-CAGG-AAGCTCACAAAG
* *
8270657 AG-CGTACCAGGAAGCT
1 AGCCATAACAGGAAGCT
8270673 TATCCGGGCC
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
23 6 0.17
24 9 0.25
25 6 0.17
26 15 0.42
ACGTcount: A:0.39, C:0.24, G:0.23, T:0.14
Consensus pattern (24 bp):
AGCCATAACAGGAAGCTCACAAAG
Found at i:8271515 original size:20 final size:20
Alignment explanation
Indices: 8271482--8271527 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
8271472 AGCCCATGTA
* *
8271482 TTTC-ATAAAATTTAGAATT
1 TTTCAATAAAATTTACAACT
*
8271501 TTTCAATAAATTTTACAACT
1 TTTCAATAAAATTTACAACT
8271521 TTTCAAT
1 TTTCAAT
8271528 TTAGTCCCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.39, C:0.11, G:0.02, T:0.48
Consensus pattern (20 bp):
TTTCAATAAAATTTACAACT
Found at i:8272668 original size:18 final size:16
Alignment explanation
Indices: 8272645--8272731 Score: 63
Period size: 16 Copynumber: 5.5 Consensus size: 16
8272635 ATTATTTAGA
*
8272645 TTTTATTTAGTTTTATGT
1 TTTTATTTA-TTTT-TCT
8272663 TTTTATTTATTTTTCT
1 TTTTATTTATTTTTCT
* *
8272679 TTTTATTTCTATTTC-
1 TTTTATTTATTTTTCT
* *
8272694 TATT-TGTATTTTTCT
1 TTTTATTTATTTTTCT
* * *
8272709 TGTTATTTGTTTTT-A
1 TTTTATTTATTTTTCT
8272724 TTTTATTT
1 TTTTATTT
8272732 TTCAGACTTA
Statistics
Matches: 55, Mismatches: 12, Indels: 7
0.74 0.16 0.09
Matches are distributed among these distances:
14 7 0.13
15 13 0.24
16 22 0.40
17 4 0.07
18 9 0.16
ACGTcount: A:0.14, C:0.05, G:0.06, T:0.76
Consensus pattern (16 bp):
TTTTATTTATTTTTCT
Found at i:8272733 original size:6 final size:6
Alignment explanation
Indices: 8272650--8272733 Score: 50
Period size: 6 Copynumber: 14.5 Consensus size: 6
8272640 TTAGATTTTA
* * * * *
8272650 TTTAGT TTTATGT TTT-TA TTTATT TTTCTT TTTATT TCTATT TCTATT
1 TTTATT TTTAT-T TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
* * * *
8272698 TGTATT TTTCTT GTTA-- TTTGTT TTTA-T TTTATT TTT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTT
8272734 CAGACTTATA
Statistics
Matches: 59, Mismatches: 14, Indels: 10
0.71 0.17 0.12
Matches are distributed among these distances:
4 2 0.03
5 8 0.14
6 45 0.76
7 4 0.07
ACGTcount: A:0.13, C:0.05, G:0.06, T:0.76
Consensus pattern (6 bp):
TTTATT
Found at i:8275091 original size:42 final size:42
Alignment explanation
Indices: 8275039--8275133 Score: 163
Period size: 42 Copynumber: 2.3 Consensus size: 42
8275029 TGAACAGCAG
*
8275039 TAAGTGTGCGAAACTAAAATGACGATGTTGAATAATGGGCAC
1 TAAGTGTGCGAAACTAAAATGACGATGTTGAATAACGGGCAC
* *
8275081 TAAGTGTGCGAAATTAAAATGATGATGTTGAATAACGGGCAC
1 TAAGTGTGCGAAACTAAAATGACGATGTTGAATAACGGGCAC
8275123 TAAGTGTGCGA
1 TAAGTGTGCGA
8275134 TACTGAGAGC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.37, C:0.11, G:0.27, T:0.25
Consensus pattern (42 bp):
TAAGTGTGCGAAACTAAAATGACGATGTTGAATAACGGGCAC
Found at i:8277736 original size:15 final size:15
Alignment explanation
Indices: 8277718--8277750 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
8277708 TTTATTTGGT
8277718 TTAA-ATTTATATATA
1 TTAATATTT-TATATA
8277733 TTAATATTTTATATA
1 TTAATATTTTATATA
8277748 TTA
1 TTA
8277751 TTATCTATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TTAATATTTTATATA
Found at i:8277754 original size:27 final size:27
Alignment explanation
Indices: 8277724--8277780 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
8277714 TGGTTTAAAT
8277724 TTATATATATTAATA-T-TTTATATATTA
1 TTATATATATTAA-ACTGTTTA-ATATTA
* *
8277751 TTATCTATGTTAAACTGTTTAATATTA
1 TTATATATATTAAACTGTTTAATATTA
8277778 TTA
1 TTA
8277781 ATTTCAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
26 1 0.04
27 21 0.81
28 4 0.15
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.56
Consensus pattern (27 bp):
TTATATATATTAAACTGTTTAATATTA
Found at i:8299629 original size:15 final size:15
Alignment explanation
Indices: 8299600--8299628 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8299590 TACTGATGTG
8299600 CTTATCTTTCTTTTT
1 CTTATCTTTCTTTTT
8299615 CTTATCTTT-TTTTT
1 CTTATCTTTCTTTTT
8299629 TTTTTTTGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (15 bp):
CTTATCTTTCTTTTT
Found at i:8300212 original size:15 final size:17
Alignment explanation
Indices: 8300192--8300230 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
8300182 CATGTTTTCT
8300192 AAAAAAAAA-A-AGAAA
1 AAAAAAAAAGAGAGAAA
*
8300207 AAAAAAAAAGAGAGGAA
1 AAAAAAAAAGAGAGAAA
8300224 AAAAAAA
1 AAAAAAA
8300231 GGAGAAGTGC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.43
16 1 0.05
17 11 0.52
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAGAGAGAAA
Found at i:8300231 original size:15 final size:15
Alignment explanation
Indices: 8300192--8300236 Score: 56
Period size: 16 Copynumber: 3.0 Consensus size: 15
8300182 CATGTTTTCT
8300192 AAAAAAAAAA-AGAA
1 AAAAAAAAAAGAGAA
*
8300206 AAAAAAAAAAGAGAGG
1 AAAAAAAAAAGAGA-A
*
8300222 AAAAAAAAAGGAGAA
1 AAAAAAAAAAGAGAA
8300237 GTGCCAAACA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
14 10 0.38
15 3 0.12
16 13 0.50
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAGAGAA
Found at i:8304578 original size:22 final size:22
Alignment explanation
Indices: 8304548--8304630 Score: 78
Period size: 22 Copynumber: 3.7 Consensus size: 22
8304538 AGTATATTGT
*
8304548 TGCTGTCCAATTTGATGTATAA
1 TGCTATCCAATTTGATGTATAA
8304570 TGCTATCCAATTTGA-GCATATTAA
1 TGCTATCCAATTTGATG--TA-TAA
* *
8304594 AGCTATCCATTTTGATGTATAA
1 TGCTATCCAATTTGATGTATAA
* * *
8304616 TTCTTTCCATTTTGA
1 TGCTATCCAATTTGA
8304631 GCATATTGAT
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
21 1 0.02
22 29 0.57
23 4 0.08
24 16 0.31
25 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.13, T:0.43
Consensus pattern (22 bp):
TGCTATCCAATTTGATGTATAA
Found at i:8304584 original size:46 final size:46
Alignment explanation
Indices: 8304519--8304661 Score: 160
Period size: 46 Copynumber: 3.1 Consensus size: 46
8304509 TTTTATATGT
* * * * *
8304519 TATAATGTTGTCCATTTTGAGTATATTGTTGCTGTCCAATTTGATG
1 TATAATGCTATCCATTTTGAGCATATTGATGCTATCCAATTTGATG
* * * *
8304565 TATAATGCTATCCAATTTGAGCATATTAAAGCTATCCATTTTGATG
1 TATAATGCTATCCATTTTGAGCATATTGATGCTATCCAATTTGATG
* * * **
8304611 TATAATTCTTTCCATTTTGAGCATATTGATGCTTTCCAATTTTTTG
1 TATAATGCTATCCATTTTGAGCATATTGATGCTATCCAATTTGATG
8304657 TATAA
1 TATAA
8304662 ATGTTGTCCA
Statistics
Matches: 79, Mismatches: 18, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.27, C:0.13, G:0.14, T:0.46
Consensus pattern (46 bp):
TATAATGCTATCCATTTTGAGCATATTGATGCTATCCAATTTGATG
Found at i:8304607 original size:24 final size:24
Alignment explanation
Indices: 8304571--8304637 Score: 68
Period size: 22 Copynumber: 2.9 Consensus size: 24
8304561 GATGTATAAT
*
8304571 GCTATCCAATTTGAGCATATTAAA
1 GCTATCCATTTTGAGCATATTAAA
*
8304595 GCTATCCATTTTGATG--TA-TAAT
1 GCTATCCATTTTGA-GCATATTAAA
* *
8304617 TCTTTCCATTTTGAGCATATT
1 GCTATCCATTTTGAGCATATT
8304638 GATGCTTTCC
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
21 1 0.03
22 15 0.43
23 4 0.11
24 14 0.40
25 1 0.03
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.43
Consensus pattern (24 bp):
GCTATCCATTTTGAGCATATTAAA
Found at i:8314617 original size:16 final size:16
Alignment explanation
Indices: 8314598--8314648 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
8314588 AAATTTACAA
8314598 TCTAATCCTTTTAAAG
1 TCTAATCCTTTTAAAG
**
8314614 TCT-ATCAATTTAAAG
1 TCTAATCCTTTTAAAG
8314629 TCTAATCCTTTTAAAG
1 TCTAATCCTTTTAAAG
8314645 TCTA
1 TCTA
8314649 TTCCGTAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
15 13 0.43
16 17 0.57
ACGTcount: A:0.33, C:0.18, G:0.06, T:0.43
Consensus pattern (16 bp):
TCTAATCCTTTTAAAG
Found at i:8314633 original size:31 final size:31
Alignment explanation
Indices: 8314589--8314649 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
8314579 AGTTTAATTA
8314589 AATTTACAATCTAATCCTTTTAAAGTCTATC
1 AATTTACAATCTAATCCTTTTAAAGTCTATC
8314620 AATTTA-AAGTCTAATCCTTTTAAAGTCTAT
1 AATTTACAA-TCTAATCCTTTTAAAGTCTAT
8314650 TCCGTAATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 2 0.07
31 27 0.93
ACGTcount: A:0.36, C:0.16, G:0.05, T:0.43
Consensus pattern (31 bp):
AATTTACAATCTAATCCTTTTAAAGTCTATC
Found at i:8315844 original size:13 final size:13
Alignment explanation
Indices: 8315826--8315857 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
8315816 TAACTATTTT
*
8315826 TTGGGTACAAAAA
1 TTGGGTAAAAAAA
8315839 TTGGGTAAAAAAA
1 TTGGGTAAAAAAA
8315852 TTGGGT
1 TTGGGT
8315858 GGACAAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.41, C:0.03, G:0.28, T:0.28
Consensus pattern (13 bp):
TTGGGTAAAAAAA
Found at i:8319003 original size:201 final size:198
Alignment explanation
Indices: 8318620--8319017 Score: 444
Period size: 201 Copynumber: 2.0 Consensus size: 198
8318610 TATGCTATCT
* * *
8318620 AAATAAGTAATTTATTATTTATTTAAAATAAAATTAATTAATATTTAAAAATAGAATTTAAAATA
1 AAATAAGTAATTTATTATTTATTTAAAATAAAATTAACTAATATTGAAAAATAGAATTCAAAATA
* ** *
8318685 TATTAATCTACTTCAAAATTAATAAATTTAAATTTGAAAACTTAATTAGATTTTTCAAAATTCCA
66 TATTAATCTACTTCAAAATTAATAAATATAAATTAAAAAACTTAATCAGATTTTTCAAAATTCCA
* * ** *
8318750 ACCTAATAAAGTTTATCCATTTAAGTATTTAAAATTAAATTAGTTTAATTTAATTAAAATATAGT
131 ACCTAATAAAGTTTATCCATTTAAGTATTTAAAAATAAAATAAATCAATTTAATTAAAATATAGT
8318815 TCA
196 TCA
* * * * **
8318818 AAATAAGTAGTTTTATTATTTTATTTAAACTTAAATTAACTAATATTGAAAACTTAGAATTCGCA
1 AAATAAGTA-ATTTATTA-TTTATTTAAAATAAAATTAACTAATATTGAAAA-ATAGAATTCAAA
* * * *
8318883 TTATATTAGTCTACTTCAAAATTAATAAATATAAA-TAAAAAATTTTAATCA-ATTTATT-TAAA
63 ATATATTAATCTACTTCAAAATTAATAAATATAAATTAAAAAA-CTTAATCAGATTT-TTCAAAA
* * ** * * *
8318945 TT-TAACATTAATAATTTTTCTCTATTTAATTATATTAAAAATAAAATAAATCAATTTAATTAAA
126 TTCCAAC-CTAATAAAGTTTATCCATTTAAGTAT-TTAAAAATAAAATAAATCAATTTAATTAAA
8319009 ATATAGTTC
189 ATATAGTTC
8319018 GCCAATTTAT
Statistics
Matches: 164, Mismatches: 29, Indels: 11
0.80 0.14 0.05
Matches are distributed among these distances:
198 9 0.05
199 10 0.06
200 63 0.38
201 82 0.50
ACGTcount: A:0.47, C:0.07, G:0.04, T:0.42
Consensus pattern (198 bp):
AAATAAGTAATTTATTATTTATTTAAAATAAAATTAACTAATATTGAAAAATAGAATTCAAAATA
TATTAATCTACTTCAAAATTAATAAATATAAATTAAAAAACTTAATCAGATTTTTCAAAATTCCA
ACCTAATAAAGTTTATCCATTTAAGTATTTAAAAATAAAATAAATCAATTTAATTAAAATATAGT
TCA
Found at i:8327008 original size:1 final size:1
Alignment explanation
Indices: 8327002--8327030 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
8326992 NNNCCCAATT
8327002 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
8327031 CACCACCAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:8329008 original size:201 final size:198
Alignment explanation
Indices: 8328625--8329022 Score: 444
Period size: 201 Copynumber: 2.0 Consensus size: 198
8328615 TATGCTATCT
* * *
8328625 AAATAAGTAATTTATTATTTATTTAAAATAAAATTAATTAATATTTAAAAATAGAATTTAAAATA
1 AAATAAGTAATTTATTATTTATTTAAAATAAAATTAACTAATATTGAAAAATAGAATTCAAAATA
* ** *
8328690 TATTAATCTACTTCAAAATTAATAAATTTAAATTTGAAAACTTAATTAGATTTTTCAAAATTCCA
66 TATTAATCTACTTCAAAATTAATAAATATAAATTAAAAAACTTAATCAGATTTTTCAAAATTCCA
* * ** *
8328755 ACCTAATAAAGTTTATCCATTTAAGTATTTAAAATTAAATTAGTTTAATTTAATTAAAATATAGT
131 ACCTAATAAAGTTTATCCATTTAAGTATTTAAAAATAAAATAAATCAATTTAATTAAAATATAGT
8328820 TCA
196 TCA
* * * * **
8328823 AAATAAGTAGTTTTATTATTTTATTTAAACTTAAATTAACTAATATTGAAAACTTAGAATTCGCA
1 AAATAAGTA-ATTTATTA-TTTATTTAAAATAAAATTAACTAATATTGAAAA-ATAGAATTCAAA
* * * *
8328888 TTATATTAGTCTACTTCAAAATTAATAAATATAAA-TAAAAAATTTTAATCA-ATTTATT-TAAA
63 ATATATTAATCTACTTCAAAATTAATAAATATAAATTAAAAAA-CTTAATCAGATTT-TTCAAAA
* * ** * * *
8328950 TT-TAACATTAATAATTTTTCTCTATTTAATTATATTAAAAATAAAATAAATCAATTTAATTAAA
126 TTCCAAC-CTAATAAAGTTTATCCATTTAAGTAT-TTAAAAATAAAATAAATCAATTTAATTAAA
8329014 ATATAGTTC
189 ATATAGTTC
8329023 GCCAATTTAT
Statistics
Matches: 164, Mismatches: 29, Indels: 11
0.80 0.14 0.05
Matches are distributed among these distances:
198 9 0.05
199 10 0.06
200 63 0.38
201 82 0.50
ACGTcount: A:0.47, C:0.07, G:0.04, T:0.42
Consensus pattern (198 bp):
AAATAAGTAATTTATTATTTATTTAAAATAAAATTAACTAATATTGAAAAATAGAATTCAAAATA
TATTAATCTACTTCAAAATTAATAAATATAAATTAAAAAACTTAATCAGATTTTTCAAAATTCCA
ACCTAATAAAGTTTATCCATTTAAGTATTTAAAAATAAAATAAATCAATTTAATTAAAATATAGT
TCA
Found at i:8330837 original size:634 final size:625
Alignment explanation
Indices: 8329638--8331199 Score: 1942
Period size: 634 Copynumber: 2.5 Consensus size: 625
8329628 TATCCCCGTT
* * * * * * * * *
8329638 CATGGGAATGCAGCACATTTCATGGTCACCATTTACTTTTTTGAAGAGCACCCGAGACGAAGGGA
1 CATGGAAATGGAGCACATTTCATGGCCACCGTTTACTTTTTTTAACAGCACCCAAGACAAAGAGA
* *
8329703 TTAGTCATTACTATCGACAATGAACATCCTGATTTTGACAAAAAAATATTGATAATTGTGAATAA
66 GTAGTCATTGCTATCGACAATGAACA-CCTGATTTTGACAAAAAAATATTGATAATTGTGAATAA
* * * * *
8329768 TAATGCTATGAGTAATCAAATTTGAATATATTAGGCAACGTTGGGAGTGGGGGGACCTTTTGATA
130 TAATACTATGAGTAGTCAAATTTGAATATATTAGGCAGCGTTGGGAGT--GGGGACCATTTAATA
* * *
8329833 TTTGCTTTTACATTTGTCCATTACGAGTAGGGGACCCTTTGATATTTGCTTCTACATTTGT-TCA
193 TTTGCTTTTACATTTGTCCATTAGGAGTAGGGGATCC-ATGATATTTGCTTCTACATTTGTCT-A
* * * * * *
8329897 ACTGGGAGGTCAAATCAGAGTCATTGCTATCAGCAGTGGACACCCTTATTTTAACAAAAAATGGT
256 AGTTGGAGGTCAAATAAGAGTCATTGTTATCAACAGTGGACACCCTTATTTCAACAAAAAATGGT
* *
8329962 CGATAATTGTAAATAATAATAGTAATATCGTGAGTAATCAAATTTGAATATGAGTTTGGCAGCGT
321 CGATAATTGTAAATAATAATAGTAATATCATGAGTAATCAAATTTGAATATGAGTTTAGCAGCGT
* * *
8330027 CGGGAAATTTCATATTACTTTTACAACCTTCTATTATGAAAATTCCCAGATCGTTTAGCGATTTT
386 CGGGAAATTTCATATTACGTTTACAACCTTCTATTATGAAAATTCCAAGATCGTTTAGCCATTTT
* **
8330092 CATCTAACTACTCATTAAATCCCAAATTTCCCTTTTCTATTATAAAAAAAATATTTTTCGTGTTT
451 CATCTAACTACTCATTAAATCCCAAATTTCCCATTTCTATTATAAAAAAAATAGCTTTCGTGTTT
*
8330157 TTTTCTTTGTTTAGAAAAAAAACATAATGATAGCATCTTAACTGTGTTATTAATAATGGTGTGGT
516 TTTTCTTTATTTAG---AAAAACA-AATGA-AGCATCTTAACTGTGTTATTAATAATGGTGTGGT
* *
8330222 CGTTACTCACCTAAT-CTCTTAATTATGAGGTTTGGAGTTGGATCCCCGCC
576 CGTTACTCACCTAATCCT-TTAATTATGAGGTTAGGAGTTGGATCCCAGCC
* * * * *
8330272 TATGGAAATGGATCACATTTCATGGCTACCGTTTACTTTTTTTAACATCACCCACA-ATAAAGAG
1 CATGGAAATGGAGCACATTTCATGGCCACCGTTTACTTTTTTTAACAGCACCCA-AGACAAAGAG
* *
8330336 AGTAGTCATTGCTATCGACAATGAACACCATGATTTTGACAAAAAAATATTTATAATTATGAATA
65 AGTAGTCATTGCTATCGACAATGAACACC-TGATTTTGACAAAAAAATATTGATAATTGTGAATA
* * *
8330401 ATAATACTATGAGTAGT-AAATTTTGCATATATTAGGTAGCGTTGGGAGTGGTGACCATTTAATA
129 ATAATACTATGAGTAGTCAAA-TTTGAATATATTAGGCAGCGTTGGGAGTGGGGACCATTTAATA
* * *
8330465 TTTTCTTTTACATTTGTCCATTAGGAGTAGGGGATCCACTGATATTTGTTTCTACCTTTGTCTAA
193 TTTGCTTTTACATTTGTCCATTAGGAGTAGGGGATCCA-TGATATTTGCTTCTACATTTGTCTAA
*
8330530 GTTGGAGGTCAAATAAGAGTCATTGTTATCAACATTGGACA-CCTTGATTTCAACAAAAAAAATG
257 GTTGGAGGTCAAATAAGAGTCATTGTTATCAACAGTGGACACCCTT-ATTTCAAC--AAAAAATG
*
8330594 GTTGATAATTGTAAATAATAATAGTAATA-CTATGAGTAATCAAATTTGAATATGAGTTTAGCAG
319 GTCGATAATTGTAAATAATAATAGTAATATC-ATGAGTAATCAAATTTGAATATGAGTTTAGC--
* ** * * * *
8330658 AGACGGTAGTGAGGGGACCTTTCATAATTGCGTTTACAACCTTTTATTATGATAATTCCAATATC
381 AG-C----GT--CGGGAAATTTCAT-ATTACGTTTACAACCTTCTATTATGAAAATTCCAAGATC
* *
8330723 GTTTAGCCATTTTCATCTAACTACTCCTTAAATTCCAAATTTCCCATTTCTATTATAAAACAAAA
438 GTTTAGCCATTTTCATCTAACTACTCATTAAATCCCAAATTTCCCATTTCTATTATAAAA-AAAA
*
8330788 TAGCTTTCGTGTTTTTTTCTTTATTTAG-AAAAC-AA-G-A-C-TTTTAACTGTGTTATTAATAA
502 TAGCTTTCGTGTTTTTTTCTTTATTTAGAAAAACAAATGAAGCATCTTAACTGTGTTATTAATAA
* *
8330847 TGGTGTGGTCGTTGCTCACCTAATCCTTTAATTATGAGGTTAGGAGTTGGATCCTAGCC
567 TGGTGTGGTCGTTACTCACCTAATCCTTTAATTATGAGGTTAGGAGTTGGATCCCAGCC
* * * * *
8330906 CATGGGAATGGAGCACATTTCATGGCCACTGTTTACTTTTTTTAATAGCACCCAAGACGAAGGGA
1 CATGGAAATGGAGCACATTTCATGGCCACCGTTTACTTTTTTTAACAGCACCCAAGACAAAGAGA
* * * **
8330971 TTAGACATTGCTACCGACAATGAACAATGTGATTTTGACAAAAAAATATTGATAATTGTGAATAA
66 GTAGTCATTGCTATCGACAATGAAC-ACCTGATTTTGACAAAAAAATATTGATAATTGTG---AA
* *
8331036 TAATAATAATATTGTGAGTAGTCAAATTTGAATATATTAGGCAGCGTTGGGAGTGGGGACCCTTT
127 TAATAATACTA---TGAGTAGTCAAATTTGAATATATTAGGCAGCGTTGGGAGTGGGGACCATTT
* * * * *
8331101 CATATATGCTTTCATATTTGTCCATTAGGAGTAAGGGATCCATAGATATTTGCTTCTACATTTGT
189 AATATTTGCTTTTACATTTGTCCATTAGGAGTAGGGGATCCAT-GATATTTGCTTCTACATTTGT
* * * *
8331166 CCAAGTTGGACGTCTAATTAGAGTCATTGTTATC
253 CTAAGTTGGAGGTCAAATAAGAGTCATTGTTATC
8331200 TGTAATGCCC
Statistics
Matches: 800, Mismatches: 97, Indels: 56
0.84 0.10 0.06
Matches are distributed among these distances:
631 4 0.00
632 110 0.14
633 8 0.01
634 387 0.48
635 5 0.01
636 3 0.00
637 13 0.02
638 1 0.00
639 3 0.00
640 128 0.16
641 10 0.01
643 10 0.01
644 89 0.11
645 29 0.04
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.36
Consensus pattern (625 bp):
CATGGAAATGGAGCACATTTCATGGCCACCGTTTACTTTTTTTAACAGCACCCAAGACAAAGAGA
GTAGTCATTGCTATCGACAATGAACACCTGATTTTGACAAAAAAATATTGATAATTGTGAATAAT
AATACTATGAGTAGTCAAATTTGAATATATTAGGCAGCGTTGGGAGTGGGGACCATTTAATATTT
GCTTTTACATTTGTCCATTAGGAGTAGGGGATCCATGATATTTGCTTCTACATTTGTCTAAGTTG
GAGGTCAAATAAGAGTCATTGTTATCAACAGTGGACACCCTTATTTCAACAAAAAATGGTCGATA
ATTGTAAATAATAATAGTAATATCATGAGTAATCAAATTTGAATATGAGTTTAGCAGCGTCGGGA
AATTTCATATTACGTTTACAACCTTCTATTATGAAAATTCCAAGATCGTTTAGCCATTTTCATCT
AACTACTCATTAAATCCCAAATTTCCCATTTCTATTATAAAAAAAATAGCTTTCGTGTTTTTTTC
TTTATTTAGAAAAACAAATGAAGCATCTTAACTGTGTTATTAATAATGGTGTGGTCGTTACTCAC
CTAATCCTTTAATTATGAGGTTAGGAGTTGGATCCCAGCC
Found at i:8340072 original size:43 final size:42
Alignment explanation
Indices: 8339980--8340125 Score: 163
Period size: 43 Copynumber: 3.5 Consensus size: 42
8339970 GTTACTCGGT
* *
8339980 GGAATCAGCACTTAGCAACCACC-TTATATTC-AGTGATACGG
1 GGAATCAGCACTTAGCAACCACCTTTACAATCAAG-GATACGG
*
8340021 GGAATCAGCACATAGCAACC-CCTTTCACAATCAAGGATACGG
1 GGAATCAGCACTTAGCAACCACCTTT-ACAATCAAGGATACGG
* * * ** *
8340063 TGGAATCAGCACTTATCAACCACATTTAGAATCAATAATTCGG
1 -GGAATCAGCACTTAGCAACCACCTTTACAATCAAGGATACGG
8340106 GGAATCAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
8340126 CCTCGGGGAA
Statistics
Matches: 89, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
40 2 0.02
41 21 0.24
42 30 0.34
43 32 0.36
44 4 0.04
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.22
Consensus pattern (42 bp):
GGAATCAGCACTTAGCAACCACCTTTACAATCAAGGATACGG
Found at i:8340117 original size:42 final size:42
Alignment explanation
Indices: 8339976--8340125 Score: 169
Period size: 42 Copynumber: 3.6 Consensus size: 42
8339966 AACCGTTACT
* * * *
8339976 CGGTGGAATCAGCACTTAGCAACCACCTTATATTCAGTGATA
1 CGGTGGAATCAGCACTTAGCAACCACTTTACAATCAATGATA
* * *
8340018 CGG-GGAATCAGCACATAGCAACCCCTTTCACAATCAAGGATA
1 CGGTGGAATCAGCACTTAGCAACCACTTT-ACAATCAATGATA
* * * *
8340060 CGGTGGAATCAGCACTTATCAACCACATTTAGAATCAATAATT
1 CGGTGGAATCAGCACTTAGCAACCAC-TTTACAATCAATGATA
8340103 CGG-GGAATCAGCACTTAGCAACC
1 CGGTGGAATCAGCACTTAGCAACC
8340126 CCTCGGGGAA
Statistics
Matches: 90, Mismatches: 15, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
41 22 0.24
42 34 0.38
43 31 0.34
44 3 0.03
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (42 bp):
CGGTGGAATCAGCACTTAGCAACCACTTTACAATCAATGATA
Found at i:8340131 original size:26 final size:26
Alignment explanation
Indices: 8340102--8340154 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
8340092 AATCAATAAT
8340102 TCGGGGAATCAGCACTTAGCAACCCC
1 TCGGGGAATCAGCACTTAGCAACCCC
*
8340128 TCGGGGAATCTGCACTTAGCAACCCC
1 TCGGGGAATCAGCACTTAGCAACCCC
8340154 T
1 T
8340155 TTTTGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.34, G:0.23, T:0.19
Consensus pattern (26 bp):
TCGGGGAATCAGCACTTAGCAACCCC
Found at i:8340287 original size:19 final size:19
Alignment explanation
Indices: 8340244--8340288 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
8340234 CGGGAACCTT
*
8340244 ATTTTACAACATTTTACCA
1 ATTTTTCAACATTTTACCA
8340263 ACTTTTTCAA-ATTTTACCA
1 A-TTTTTCAACATTTTACCA
8340282 CATTTTT
1 -ATTTTT
8340289 GTAATCTACA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.31, C:0.20, G:0.00, T:0.49
Consensus pattern (19 bp):
ATTTTTCAACATTTTACCA
Found at i:8347281 original size:24 final size:25
Alignment explanation
Indices: 8347246--8347332 Score: 79
Period size: 25 Copynumber: 3.5 Consensus size: 25
8347236 GAATCAGTAT
** *
8347246 GCTCTTACGAGCTTTA-AATGGTAA
1 GCTCTTACGAGCTGAATAACGGTAA
8347270 GCTCTT-CTGAGCTGAATAACGGTAA
1 GCTCTTAC-GAGCTGAATAACGGTAA
* * *
8347295 GCTCTTTCGAGCAGAATAACGGGAA
1 GCTCTTACGAGCTGAATAACGGTAA
* *
8347320 GCTCATGCGAGCT
1 GCTCTTACGAGCT
8347333 AAGTATCAGT
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
23 1 0.02
24 12 0.23
25 38 0.73
26 1 0.02
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (25 bp):
GCTCTTACGAGCTGAATAACGGTAA
Found at i:8347299 original size:25 final size:25
Alignment explanation
Indices: 8347265--8347323 Score: 84
Period size: 25 Copynumber: 2.4 Consensus size: 25
8347255 AGCTTTAAAT
*
8347265 GGTAAGCTC-TTCTGAGCTGAATAAC
1 GGTAAGCTCTTTC-GAGCAGAATAAC
8347290 GGTAAGCTCTTTCGAGCAGAATAAC
1 GGTAAGCTCTTTCGAGCAGAATAAC
*
8347315 GGGAAGCTC
1 GGTAAGCTC
8347324 ATGCGAGCTA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
25 28 0.90
26 3 0.10
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (25 bp):
GGTAAGCTCTTTCGAGCAGAATAAC
Found at i:8350501 original size:639 final size:638
Alignment explanation
Indices: 8349182--8350520 Score: 1750
Period size: 639 Copynumber: 2.1 Consensus size: 638
8349172 TTCAATTTTA
* * * * * * **
8349182 GATATTTACTTCTACATTTGTCCAAGTTGGAGATCAAATCAGAGTCATTGTTATCAGAAGTGAAC
1 GATATTTGCTTCCACATTTGTCCAAGTTAGAGCTCAAATCAGAGTCATTGTTATCAGCAGCGGGC
* * * * * * * * ** * * *
8349247 ACCCTAATTTCAACAAAAAAAAGGTTGATAATTGT-AATAAATAATAGTAATACTATGAGTAATA
66 AACTTGATTT--A-ATAGAAATGGTTCATAATTGTAAAT-AATTATTTTAAAATTGTGAGTAATA
* * *
8349311 ACATTTGAATATGAGTTTGGCAGCGACGGGAGTGAGGGGACCTTTCATATTTCCTTTCACAACCT
127 ACATTTGAATATGAGTTTAGAAGCGACGGGAGTGAGGGAACCTTTCATATTTCCTTTCACAACCT
** * * *
8349376 TCTCTTATGATTATTCCCATATCGTTTAGCCATTTTGATCTACCTACTCCTTAAATACAAAATTT
192 TCTCTTATGAGAATTCCCATATCGTTTAGCCATTTTCATCAAACTACTCCTTAAATACAAAATTT
** * * *
8349441 CCCATTTCTATTATGAACCAAAAAGTTTTCCTGTTTTTTTCAATGTTTCTAAAAAAAATAATGAT
257 CCCATTTCTATTATGAAAAAAAAAATTTTCCTGTTCTTTTCAATGTTTCTAAAAAAAATAATAAT
* * * *
8349506 GGCATTTTAACTTTGATATTAAGAATGATGTGGACCTTGCTCAACTAATCCCTTACTTATGACGT
322 GCCATTTTAAATTTGATATTAAGAATGATGTGGACCATGCTCAACTAATCCCTTACTTATGACCT
* * * *
8349571 TGGGAGTTGGATCCCTACCCATGGGAATGGAGCACATTCCATGGCCAAGGTTTACTTCTTTGAAG
387 TAGGAGTTGGATCCCAACCCATAGGAATGGAACACATTCCATGGCCAAGGTTTACTTCTTTGAAG
* * * * *
8349636 AGAACCTATGACGAAGGGATTAGTCATTACTACCGACAATGAACACCGTGATTTTCTCAATAAAA
452 AGAACCTACGACGAAGGGAGTAGACATTACAACCGACAATGAACACCATGATTTTCTCAATAAAA
*****
8349701 TATTGATAATTGTGAATAATAATATTGTGAGTAGTCAAATTAGAATATATTAAATGGTGTTGGGA
517 TATTGATAATTGTGAATAATAATATTGTGAGTAGTCAAATTAGAATATATTAAACAACATTGGGA
8349766 GTAGGGACCCTTTCATATTTTCTATTACATTTGTCTATTAAGAGTAAGGGATCCATT
582 GTAGGGACCCTTTCATATTTTCTATTACATTTGTCTATTAAGAGTAAGGGATCCATT
* *
8349823 GATATTTGCTTCTACATTTGTCCAAGTTGGAGCTCAAATCAGAGTCATTGTTATCAGCAGCGGGC
1 GATATTTGCTTCCACATTTGTCCAAGTTAGAGCTCAAATCAGAGTCATTGTTATCAGCAGCGGGC
8349888 AACTTGATTTAATAGAAATGGTTCATAATTGTAAATAATTATTTTAAAATTGTGAGTAATCAA-A
66 AACTTGATTTAATAGAAATGGTTCATAATTGTAAATAATTATTTTAAAATTGTGAGTAAT-AACA
* **
8349952 TTTGAATATGAGTTTAGAAGCGACGGGAGTGAGGGAACCTTTCATATTTTCTTTCATGACCTTCT
130 TTTGAATATGAGTTTAGAAGCGACGGGAGTGAGGGAACCTTTCATATTTCCTTTCACAACCTTCT
*
8350017 CTTATGAGAATTCCCATATCGTTTAGCCATTTTCATCAAACTACTCCTTAAATACAAAATTTTCC
195 CTTATGAGAATTCCCATATCGTTTAGCCATTTTCATCAAACTACTCCTTAAATACAAAATTTCCC
* * ** * *
8350082 ATTTTTATTAT-AAAAATAAATAATTTTCTTGTTCTTTTCTTTGTTTGTAAAAATAATAATAATG
260 ATTTCTATTATGAAAAA-AAA-AATTTTCCTGTTCTTTTCAATGTTTCTAAAAAAAATAATAATG
* *
8350146 CCATTTTAAATTTGTTATTAAGAATGATGTGGCCCATGCTCAACTAATCCCTTAAC-TATGACCT
323 CCATTTTAAATTTGATATTAAGAATGATGTGGACCATGCTCAACTAATCCCTT-ACTTATGACCT
* * ** *
8350210 TAGGAGTTGGATTCCAACCCATAGGAATGGAATACATTCCATGGCCACTGTTTACTTCTTTGAGG
387 TAGGAGTTGGATCCCAACCCATAGGAATGGAACACATTCCATGGCCAAGGTTTACTTCTTTGAAG
* * * * *
8350275 AGCACCTGCGACGAAGGGAGTAGACATTGCAACTGACAATGAACACCATGATTTTGTCAATAAAA
452 AGAACCTACGACGAAGGGAGTAGACATTACAACCGACAATGAACACCATGATTTTCTCAATAAAA
* * **
8350340 TATTGATAATTGTGAATAATAATATTGTGAGTATTCAAATTTGAATATATTAGGCAACATTGGGA
517 TATTGATAATTGTGAATAATAATATTGTGAGTAGTCAAATTAGAATATATTAAACAACATTGGGA
* ** * * * * *
8350405 GTGGGGACTGTTTCATATTTTCTTTTGCATTTGTCTGTTACGAGTTAGGGATCCATT
582 GTAGGGACCCTTTCATATTTTCTATTACATTTGTCTATTAAGAGTAAGGGATCCATT
* * * *
8350462 GATATTTGCTTCCATATTTTTCCAAGTTAGTGGTCAAATCAGAGTCATTGTTATCAGCA
1 GATATTTGCTTCCACATTTGTCCAAGTTAGAGCTCAAATCAGAGTCATTGTTATCAGCA
8350521 AGGGACAACC
Statistics
Matches: 603, Mismatches: 90, Indels: 12
0.86 0.13 0.02
Matches are distributed among these distances:
637 3 0.00
638 167 0.28
639 365 0.61
640 2 0.00
641 66 0.11
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.36
Consensus pattern (638 bp):
GATATTTGCTTCCACATTTGTCCAAGTTAGAGCTCAAATCAGAGTCATTGTTATCAGCAGCGGGC
AACTTGATTTAATAGAAATGGTTCATAATTGTAAATAATTATTTTAAAATTGTGAGTAATAACAT
TTGAATATGAGTTTAGAAGCGACGGGAGTGAGGGAACCTTTCATATTTCCTTTCACAACCTTCTC
TTATGAGAATTCCCATATCGTTTAGCCATTTTCATCAAACTACTCCTTAAATACAAAATTTCCCA
TTTCTATTATGAAAAAAAAAATTTTCCTGTTCTTTTCAATGTTTCTAAAAAAAATAATAATGCCA
TTTTAAATTTGATATTAAGAATGATGTGGACCATGCTCAACTAATCCCTTACTTATGACCTTAGG
AGTTGGATCCCAACCCATAGGAATGGAACACATTCCATGGCCAAGGTTTACTTCTTTGAAGAGAA
CCTACGACGAAGGGAGTAGACATTACAACCGACAATGAACACCATGATTTTCTCAATAAAATATT
GATAATTGTGAATAATAATATTGTGAGTAGTCAAATTAGAATATATTAAACAACATTGGGAGTAG
GGACCCTTTCATATTTTCTATTACATTTGTCTATTAAGAGTAAGGGATCCATT
Found at i:8350910 original size:19 final size:19
Alignment explanation
Indices: 8350855--8350911 Score: 57
Period size: 18 Copynumber: 3.1 Consensus size: 19
8350845 ATCTGTTTCG
* *
8350855 TTCATTTTCAAAACATTT-
1 TTCAATTTCAAAACGTTTA
*
8350873 TTC-ATTTACAAATCG-TTA
1 TTCAATTT-CAAAACGTTTA
8350891 TTCAATTTCAAAACGTTTA
1 TTCAATTTCAAAACGTTTA
8350910 TT
1 TT
8350912 TTTATTTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
17 5 0.16
18 17 0.55
19 9 0.29
ACGTcount: A:0.33, C:0.16, G:0.04, T:0.47
Consensus pattern (19 bp):
TTCAATTTCAAAACGTTTA
Found at i:8359798 original size:16 final size:16
Alignment explanation
Indices: 8359773--8359806 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8359763 AAAACAAATG
*
8359773 AAATAAAAGAATAGAA
1 AAATAAAAGAACAGAA
*
8359789 AAATAGAAGAACAGAA
1 AAATAAAAGAACAGAA
8359805 AA
1 AA
8359807 GAAACAGAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.74, C:0.03, G:0.15, T:0.09
Consensus pattern (16 bp):
AAATAAAAGAACAGAA
Found at i:8360651 original size:20 final size:20
Alignment explanation
Indices: 8360626--8360665 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
8360616 CGTAAAATGA
*
8360626 TTTCTGAAAAATGTTTTACT
1 TTTCTGAAAAATGATTTACT
*
8360646 TTTCTGTAAAATGATTTACT
1 TTTCTGAAAAATGATTTACT
8360666 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.50
Consensus pattern (20 bp):
TTTCTGAAAAATGATTTACT
Found at i:8360655 original size:34 final size:34
Alignment explanation
Indices: 8360612--8360677 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 34
8360602 AGTAAAATAT
*
8360612 TTTTCGTAAAATGATTT-CTGAAAAATGTTTTAC
1 TTTTCGTAAAATGATTTACTGAAAAATATTTTAC
*
8360645 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTC-GTAAAATGATTTACTGAAAAATATTTT
8360678 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 5 0.17
34 12 0.41
35 12 0.41
ACGTcount: A:0.33, C:0.08, G:0.12, T:0.47
Consensus pattern (34 bp):
TTTTCGTAAAATGATTTACTGAAAAATATTTTAC
Found at i:8362039 original size:280 final size:280
Alignment explanation
Indices: 8361538--8362097 Score: 1021
Period size: 280 Copynumber: 2.0 Consensus size: 280
8361528 AAAATCTAAG
*
8361538 ATTTTTATGCTTATGCAGCCTCAAATTTGGCAATTGGCATAATTGCCCATTTGACTCATATTATT
1 ATTTTTATACTTATGCAGCCTCAAATTTGGCAATTGGCATAATTGCCCATTTGACTCATATTATT
8361603 TTCCTTTAATCTATAATGAAACTTTCACTTCTATTATAATTTAATCCTTTTTACTAATTACTCTT
66 TTCCTTTAATCTATAATGAAACTTTCACTTCTATTATAATTTAATCCTTTTTACTAATTACTCTT
*
8361668 AATTAGACTAAATTCACCTAATTAATACCTATTTAAGCACCAAACTAAATTCATAATTACTTCTA
131 AATTAGACTAAATTCACCTAATTAATACCTATTTAAGCACCAAACTAAATTCATAATTACGTCTA
* * * * *
8361733 ATAATTATTTTCGAACTCAATTTACTAAGACGGAGGCTCGATATTATATTTTTTCGATGCTCGTG
196 ATAATTATTTTCGAACTCAATTTACTAAAACGGAGGCCCGATATTATACTTTTCCGATGCCCGTG
8361798 AATTTTGGGTCATTACATTT
261 AATTTTGGGTCATTACATTT
*
8361818 ATTTTTATACTTATGCCGCCTCAAATTTGGCAATTGGCATAATTGCCCATTTGACTCATATTATT
1 ATTTTTATACTTATGCAGCCTCAAATTTGGCAATTGGCATAATTGCCCATTTGACTCATATTATT
8361883 TTCCTTTAATCTATAATGAAACTTTCACTTCTATTATAATTTAATCCTTTTTACTAATTACTCTT
66 TTCCTTTAATCTATAATGAAACTTTCACTTCTATTATAATTTAATCCTTTTTACTAATTACTCTT
8361948 AATTAGACTAAATTCACCTAATTAATACCTATTTAAGCACCAAACTAAATTCATAATTACGTCTA
131 AATTAGACTAAATTCACCTAATTAATACCTATTTAAGCACCAAACTAAATTCATAATTACGTCTA
* *
8362013 ATAATTATTTTTGAACTCAATTTACTAAAACGGAGGCCCGATGTTATACTTTTCCGATGCCCGTG
196 ATAATTATTTTCGAACTCAATTTACTAAAACGGAGGCCCGATATTATACTTTTCCGATGCCCGTG
*
8362078 AATTTTGGGTCATTATATTT
261 AATTTTGGGTCATTACATTT
8362098 TAATTTCCAA
Statistics
Matches: 269, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
280 269 1.00
ACGTcount: A:0.31, C:0.18, G:0.09, T:0.42
Consensus pattern (280 bp):
ATTTTTATACTTATGCAGCCTCAAATTTGGCAATTGGCATAATTGCCCATTTGACTCATATTATT
TTCCTTTAATCTATAATGAAACTTTCACTTCTATTATAATTTAATCCTTTTTACTAATTACTCTT
AATTAGACTAAATTCACCTAATTAATACCTATTTAAGCACCAAACTAAATTCATAATTACGTCTA
ATAATTATTTTCGAACTCAATTTACTAAAACGGAGGCCCGATATTATACTTTTCCGATGCCCGTG
AATTTTGGGTCATTACATTT
Found at i:8362284 original size:24 final size:23
Alignment explanation
Indices: 8362204--8362288 Score: 66
Period size: 24 Copynumber: 3.7 Consensus size: 23
8362194 TGATTTGTAC
*
8362204 AAAAATGGACAGCATAATATCCTT
1 AAAAATGGACAGCATAATATAC-T
* * *
8362228 AAAAATGGATAGCAT-TTAAAC-
1 AAAAATGGACAGCATAATATACT
* * *
8362249 AACATTCGGACAGCATAATATGCT
1 AAAAAT-GGACAGCATAATATACT
8362273 AAAAAATGGACAGCAT
1 -AAAAATGGACAGCAT
8362289 TTTGTTATCA
Statistics
Matches: 45, Mismatches: 12, Indels: 8
0.69 0.18 0.12
Matches are distributed among these distances:
21 4 0.09
22 8 0.18
23 6 0.13
24 23 0.51
25 4 0.09
ACGTcount: A:0.47, C:0.15, G:0.15, T:0.22
Consensus pattern (23 bp):
AAAAATGGACAGCATAATATACT
Found at i:8373696 original size:26 final size:26
Alignment explanation
Indices: 8373666--8373754 Score: 126
Period size: 26 Copynumber: 3.4 Consensus size: 26
8373656 GCAACTCTTA
* * *
8373666 TGAGCGTCCCG-TTATATGGCTCTTCG
1 TGAGCTTCCCGATTA-AAGGCTCTTTG
8373692 TGAGCTTCCCGATTAAAGGCTCTTTG
1 TGAGCTTCCCGATTAAAGGCTCTTTG
*
8373718 TGAGCTTCTCGATTAAAGGCTCTTTG
1 TGAGCTTCCCGATTAAAGGCTCTTTG
8373744 TGAGCTTCCCG
1 TGAGCTTCCCG
8373755 TTAGTGCTCG
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
26 54 0.95
27 3 0.05
ACGTcount: A:0.16, C:0.25, G:0.25, T:0.35
Consensus pattern (26 bp):
TGAGCTTCCCGATTAAAGGCTCTTTG
Found at i:8373837 original size:24 final size:24
Alignment explanation
Indices: 8373801--8373849 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
8373791 TGGTGCTTCT
*
8373801 CGTTAATTACTCTTCGGAGCTACC
1 CGTTAATTACTCTTCGAAGCTACC
* *
8373825 CGTTAATTGCTCTTTGAAGCTACC
1 CGTTAATTACTCTTCGAAGCTACC
8373849 C
1 C
8373850 ATTATAGGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.20, C:0.29, G:0.16, T:0.35
Consensus pattern (24 bp):
CGTTAATTACTCTTCGAAGCTACC
Found at i:8373895 original size:25 final size:25
Alignment explanation
Indices: 8373867--8373924 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
8373857 GCTCTTTGTG
*
8373867 AGCTTCCCGTTATATTACCCGGATA
1 AGCTTCCCGTTATATTACCCAGATA
* **
8373892 AGCTTTCCGTTATATTGTCCAGATA
1 AGCTTCCCGTTATATTACCCAGATA
8373917 AGCTTCCC
1 AGCTTCCC
8373925 ATTACAAGGC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34
Consensus pattern (25 bp):
AGCTTCCCGTTATATTACCCAGATA
Found at i:8380785 original size:21 final size:21
Alignment explanation
Indices: 8380759--8380814 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
8380749 AACAACGGTG
*
8380759 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGTA
8380780 GCGGTGAGATTAGATACTGTA
1 GCGGTGAGATTAGATACTGTA
*
8380801 GCAGTGAGATTAGA
1 GCGGTGAGATTAGA
8380815 AACAGCGGTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.29, C:0.09, G:0.34, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:8384970 original size:6 final size:6
Alignment explanation
Indices: 8384959--8385002 Score: 70
Period size: 6 Copynumber: 7.2 Consensus size: 6
8384949 TTTGCAACCC
*
8384959 AAGGGG AAGGGG AAAGGG AAGGGG AAGGGG AAGGGG AAAGGGG A
1 AAGGGG AAGGGG AAGGGG AAGGGG AAGGGG AAGGGG -AAGGGG A
8385003 GAAGAAGGTA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
6 29 0.83
7 6 0.17
ACGTcount: A:0.39, C:0.00, G:0.61, T:0.00
Consensus pattern (6 bp):
AAGGGG
Found at i:8387363 original size:20 final size:20
Alignment explanation
Indices: 8387340--8387401 Score: 65
Period size: 18 Copynumber: 3.1 Consensus size: 20
8387330 TATAAAATTA
*
8387340 TAAAAAAAATTAATTATTTT
1 TAAAAAAAATTAAATATTTT
**
8387360 TAAAGTAAA-TAAAT-TTTT
1 TAAAAAAAATTAAATATTTT
*
8387378 TATAAAAAATTAAATATATTT
1 TAAAAAAAATTAAATAT-TTT
8387399 TAA
1 TAA
8387402 TAATTTCATA
Statistics
Matches: 32, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
18 10 0.31
19 9 0.28
20 8 0.25
21 5 0.16
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.44
Consensus pattern (20 bp):
TAAAAAAAATTAAATATTTT
Found at i:8387391 original size:19 final size:19
Alignment explanation
Indices: 8387343--8387399 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 19
8387333 AAAATTATAA
8387343 AAAAAATT-AATTATTTTT
1 AAAAAATTAAATTATTTTT
8387361 AAAGTAAA-TAAATT-TTTTAT
1 AAA--AAATTAAATTATTTT-T
8387381 AAAAAATTAAATATATTTT
1 AAAAAATTAAAT-TATTTT
8387400 AATAATTTCA
Statistics
Matches: 32, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
18 6 0.19
19 10 0.31
20 12 0.38
21 4 0.12
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.46
Consensus pattern (19 bp):
AAAAAATTAAATTATTTTT
Found at i:8392842 original size:140 final size:138
Alignment explanation
Indices: 8392584--8392863 Score: 366
Period size: 140 Copynumber: 2.0 Consensus size: 138
8392574 TATAACAAAA
* * * *
8392584 GTCGACATAGTGTTGGACAAAACTGACTTTTATTTAAGCGTTGCCTTAAGCATGCATATCCCGAC
1 GTCGACATAGTGTTGGACAAAACAGACTCTTATTTAAGCGTTGCCTCAAGCATGCATATCCCAAC
* * * * *
8392649 CCTTATACAAAGAGTTGGCTAAAGCATATATTGACAATTCTATCTCAAAACTTAGGAAAGTTTTG
66 CCTTATACAAAGAGTTGGCCAAAGCATACATCGACAATTCTATCCCAAAACTTA--AAAGTGTTG
8392714 GCCCAAAAGT
129 GCCCAAAAGT
* *
8392724 GTCGGCATAGTGTTGGACAAAACAGACTCTTATTTAA-CGGTTGCCTCAAGCATGGATATCCCAA
1 GTCGACATAGTGTTGGACAAAACAGACTCTTATTTAAGC-GTTGCCTCAAGCATGCATATCCCAA
* * * * *
8392788 CTCTTATACAAAGAGTTTGCCAAAGCGTACATCGGCAAGTT-TATCCCAACACTTAAAAGTGTTG
65 CCCTTATACAAAGAGTTGGCCAAAGCATACATCGACAA-TTCTATCCCAAAACTTAAAAGTGTTG
8392852 GCCCAAAAGT
129 GCCCAAAAGT
8392862 GT
1 GT
8392864 TGTCTTAGGA
Statistics
Matches: 122, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
138 20 0.16
139 1 0.01
140 99 0.81
141 2 0.02
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (138 bp):
GTCGACATAGTGTTGGACAAAACAGACTCTTATTTAAGCGTTGCCTCAAGCATGCATATCCCAAC
CCTTATACAAAGAGTTGGCCAAAGCATACATCGACAATTCTATCCCAAAACTTAAAAGTGTTGGC
CCAAAAGT
Found at i:8402953 original size:21 final size:21
Alignment explanation
Indices: 8402929--8402968 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
8402919 AAGTTTATAG
8402929 ATTTTCAGGGAAGGACATAAA
1 ATTTTCAGGGAAGGACATAAA
8402950 ATTTTCAGGGAAGGACATA
1 ATTTTCAGGGAAGGACATA
8402969 GGATCTGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.10, G:0.25, T:0.25
Consensus pattern (21 bp):
ATTTTCAGGGAAGGACATAAA
Found at i:8409496 original size:23 final size:23
Alignment explanation
Indices: 8409470--8409608 Score: 176
Period size: 23 Copynumber: 6.2 Consensus size: 23
8409460 GTTATTTATT
*
8409470 AGTGGTAACTACGGCTACATATC
1 AGTGGTAGCTACGGCTACATATC
* *
8409493 AGTGGTAGCTTCGGCTACATTTC
1 AGTGGTAGCTACGGCTACATATC
*
8409516 AGTAGTAGCTACGGCTACATATC
1 AGTGGTAGCTACGGCTACATATC
* * *
8409539 AGTGGAAGCTTCGG---CATTTC
1 AGTGGTAGCTACGGCTACATATC
*
8409559 AGTGGTAGCTACGGCTACGTATC
1 AGTGGTAGCTACGGCTACATATC
*
8409582 AGTGGTAGCTTCGGCTACATATC
1 AGTGGTAGCTACGGCTACATATC
8409605 AGTG
1 AGTG
8409609 TGGCACTTAT
Statistics
Matches: 97, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
20 17 0.18
23 80 0.82
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.29
Consensus pattern (23 bp):
AGTGGTAGCTACGGCTACATATC
Found at i:8409571 original size:43 final size:43
Alignment explanation
Indices: 8409470--8409596 Score: 191
Period size: 43 Copynumber: 2.9 Consensus size: 43
8409460 GTTATTTATT
*
8409470 AGTGGTAACTACGGCTACATATCAGTGGTAGCTTCGGCTACATTTC
1 AGTGGTAGCTACGGCTACATATCAGTGGTAGCTTCGG---CATTTC
* *
8409516 AGTAGTAGCTACGGCTACATATCAGTGGAAGCTTCGGCATTTC
1 AGTGGTAGCTACGGCTACATATCAGTGGTAGCTTCGGCATTTC
*
8409559 AGTGGTAGCTACGGCTACGTATCAGTGGTAGCTTCGGC
1 AGTGGTAGCTACGGCTACATATCAGTGGTAGCTTCGGC
8409597 TACATATCAG
Statistics
Matches: 75, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
43 41 0.55
46 34 0.45
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (43 bp):
AGTGGTAGCTACGGCTACATATCAGTGGTAGCTTCGGCATTTC
Found at i:8410756 original size:53 final size:53
Alignment explanation
Indices: 8410676--8410780 Score: 210
Period size: 53 Copynumber: 2.0 Consensus size: 53
8410666 GACCAATATT
8410676 TAGTTAGTGGGTGGTATATGCCAACATTGCCCTTAAGTTATGTGATTTATAAA
1 TAGTTAGTGGGTGGTATATGCCAACATTGCCCTTAAGTTATGTGATTTATAAA
8410729 TAGTTAGTGGGTGGTATATGCCAACATTGCCCTTAAGTTATGTGATTTATAA
1 TAGTTAGTGGGTGGTATATGCCAACATTGCCCTTAAGTTATGTGATTTATAA
8410781 TTTATTTAAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.28, C:0.11, G:0.23, T:0.38
Consensus pattern (53 bp):
TAGTTAGTGGGTGGTATATGCCAACATTGCCCTTAAGTTATGTGATTTATAAA
Found at i:8420691 original size:23 final size:23
Alignment explanation
Indices: 8420639--8420726 Score: 128
Period size: 23 Copynumber: 4.0 Consensus size: 23
8420629 CTTGATCAAT
*
8420639 ATACGACACAT-AAGTGCTTG-A
1 ATACGACACATAAAGTGCCTGAA
*
8420660 A-ACGACACATGAAGTGCCTGAA
1 ATACGACACATAAAGTGCCTGAA
8420682 ATACGACACATAAAGTGCCTGAA
1 ATACGACACATAAAGTGCCTGAA
*
8420705 ATACAACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
8420727 TCGGTAAAGC
Statistics
Matches: 61, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
20 9 0.15
21 9 0.15
22 2 0.03
23 41 0.67
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.18
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAA
Found at i:8421434 original size:28 final size:30
Alignment explanation
Indices: 8421398--8421465 Score: 88
Period size: 28 Copynumber: 2.3 Consensus size: 30
8421388 ATTATTTAAT
*
8421398 TAATAAATATCT-TTTACTT-AATAATAAA-
1 TAATAAATATCTATTTAATTAAATAA-AAAG
8421426 TAATAAATATCTATTTAATTAAATAAAAAG
1 TAATAAATATCTATTTAATTAAATAAAAAG
8421456 TAATTAAATA
1 TAA-TAAATA
8421466 AATCTATTAC
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
28 12 0.34
29 9 0.26
30 8 0.23
31 6 0.17
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.40
Consensus pattern (30 bp):
TAATAAATATCTATTTAATTAAATAAAAAG
Found at i:8448347 original size:43 final size:44
Alignment explanation
Indices: 8448284--8448369 Score: 129
Period size: 43 Copynumber: 2.0 Consensus size: 44
8448274 TTTTGTGGCG
* *
8448284 TTTGTAAAGAAAAGCGCCGCTAAATATCATGTTCTATAACGGCA
1 TTTGTAAAGAAAAGCACCGCTAAAGATCATGTTCTATAACGGCA
* *
8448328 TTTGT-AATAAAAGCACCGCTAAAGATCATGTTCTATAGCGGC
1 TTTGTAAAGAAAAGCACCGCTAAAGATCATGTTCTATAACGGC
8448370 GTTTTCTCAC
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
43 33 0.87
44 5 0.13
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.28
Consensus pattern (44 bp):
TTTGTAAAGAAAAGCACCGCTAAAGATCATGTTCTATAACGGCA
Found at i:8451328 original size:15 final size:15
Alignment explanation
Indices: 8451310--8451338 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8451300 TAAATAAAAA
8451310 AAATATTAAATTATT
1 AAATATTAAATTATT
8451325 AAATATTAAATTAT
1 AAATATTAAATTAT
8451339 AATAATATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
AAATATTAAATTATT
Found at i:8465944 original size:89 final size:89
Alignment explanation
Indices: 8465832--8466470 Score: 794
Period size: 89 Copynumber: 7.2 Consensus size: 89
8465822 AAGACTTGTA
* * *
8465832 TCTTCGATCTACTTCGCCACCAGTATGGGCAA-ACAAGATCTGTTCTCTTTTATCTACTTCATGC
1 TCTTCGATCTACTTCGCCACCAGTATGGG-AAGACAAGATCTGTTATCTTTGATCTACTTCACGC
*
8465896 CAATACATGAAGACAAGATCTGCTT
65 CAGTACATGAAGACAAGATCTGCTT
* *
8465921 TCTTCGATCTACTTCGCCACCAGTATGAGAAGACAAGATCTGGTATCTTTGATCTACTTCACGCC
1 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTATCTTTGATCTACTTCACGCC
8465986 AGTACATGAAGACAAGATCTGCTT
66 AGTACATGAAGACAAGATCTGCTT
* * *
8466010 TTTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGGTACCTTTGATCTACTTCACGCC
1 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTATCTTTGATCTACTTCACGCC
* *
8466075 AGTACATGAAGACAAGATTTGTTT
66 AGTACATGAAGACAAGATCTGCTT
* * *
8466099 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAAATCTGTTATTTTTTATCTACTTCACGCC
1 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTATCTTTGATCTACTTCACGCC
* *
8466164 GGTACATGAAGACAAGATCTACTT
66 AGTACATGAAGACAAGATCTGCTT
* * *
8466188 TTTTCGATCTACTTCGCCATCAGTATGGGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCC
1 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTATCTTTGATCTACTTCACGCC
* *
8466253 AGTACATGAAGACAAGATTTGTTT
66 AGTACATGAAGACAAGATCTGCTT
* * *
8466277 TCTTCGATCTACTTCGCCATCAGTATGGGAAGACAAGATCTGCTT-TCTTCGATCTACTTCACCA
1 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTG-TTATCTTTGATCTACTTCA-CG
*
8466341 CCAGT--ATGGCAAGACAAGATATG-TT
64 CCAGTACAT-G-AAGACAAGATCTGCTT
* * * *** *
8466366 ATCTTTGATCTACTTC-ACGCCAGTACATGAAGACAAGATCTGCTT-TCTTCGATCTACTT--CG
1 -TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTG-TTATCTTTGATCTACTTCACG
**
8466427 CCACCAGCATGGCAAGACAAGATCTG-TT
64 CCAGTA-CAT-G-AAGACAAGATCTGCTT
*
8466455 ATCTTTGATCTACTTC
1 -TCTTCGATCTACTTC
8466471 ACGCCAGTAC
Statistics
Matches: 494, Mismatches: 47, Indels: 18
0.88 0.08 0.03
Matches are distributed among these distances:
86 4 0.01
88 4 0.01
89 453 0.92
90 33 0.07
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (89 bp):
TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTATCTTTGATCTACTTCACGCC
AGTACATGAAGACAAGATCTGCTT
Found at i:8466307 original size:267 final size:268
Alignment explanation
Indices: 8465830--8466648 Score: 848
Period size: 267 Copynumber: 3.1 Consensus size: 268
8465820 ATAAGACTTG
* * *
8465830 TATCTTCGATCTACTTCGCCACCAGTATGGGCAAACAAGATCTGTTCTCTTTTATCTACTTCATG
1 TATCTTCGATCTACTTCGCCACCAGTATGGGCAAACAAAATCTGTTATCTTTTATCTACTTCACG
*
8465895 CCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGAGAAGACAAGAT
66 CCAATACATGAAGACAAGATCTACTTTCTTCGATCTACTTCGCCACCAGTATGAGAAGACAAGAT
*
8465960 CTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTTTTCGATCTACTTC
131 CTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTTTTCGATCTACTTC
* * *
8466025 GCCACCAGTATGGGAAGACAAGATCTGGTACCTTTGATCTACTTCA-CGCCAGTACAT-G-AAGA
196 GCCACCAGTATGGGAAGACAAGATCTGCTACCTTCGATCTACTTCACCACCAGT--ATGGCAAGA
*
8466087 CAAGATTTGT
259 CAAGATATGT
* *
8466097 TTTCTTCGATCTACTTCGCCACCAGTATGGG-AAGACAAAATCTGTTATTTTTTATCTACTTCAC
1 TATCTTCGATCTACTTCGCCACCAGTATGGGCAA-ACAAAATCTGTTATCTTTTATCTACTTCAC
** * * *
8466161 GCCGGTACATGAAGACAAGATCTACTTTTTTCGATCTACTTCGCCATCAGTATGGGAAGACAAGA
65 GCCAATACATGAAGACAAGATCTACTTTCTTCGATCTACTTCGCCACCAGTATGAGAAGACAAGA
*
8466226 TCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATTTG-TTTTCTTCGATCTACT
130 TCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTT-TTCGATCTACT
* **
8466290 TCGCCATCAGTATGGGAAGACAAGATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGCAAGA
194 TCGCCACCAGTATGGGAAGACAAGATCTGCTACCTTCGATCTACTTCACCACCAGTATGGCAAGA
8466355 CAAGATATGT
259 CAAGATATGT
* * * *** * **
8466365 TATCTTTGATCTACTTC-ACGCCAGTACATG-AAGACAAGATCTGCTT-TCTTCGATCTACTT--
1 TATCTTCGATCTACTTCGCCACCAGTATGGGCAA-ACAAAATCTG-TTATCTTTTATCTACTTCA
** * * * * *
8466425 CGCCACCAGCATGGCAAGACAAGATCT-GTTATCTTTGATCTACTTC-ACGCCAGTA-CATGAAG
64 CGCCAATA-CAT-G-AAGACAAGATCTACTT-TCTTCGATCTACTTCGCCACCAGTATGA-GAAG
** * * * * *
8466487 ACGCGGTCCGCT-TCCTTCGATCTACTTCGCCACCAGT--ATGGCAAGACAAGATCTG-TTATCT
124 ACAAGATCTGCTAT-CTTTGATCTACTTC-ACGCCAGTACAT-G-AAGACAAGATCTGCTT-T-T
* * *** ** * * * *
8466548 TT-GATCTACTTC-ACGCCAGTACATGAAGACGCGGTCCGCTTCCTTCGATCTACTTCGCCACCA
183 TTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTACCTTCGATCTACTTCACCACCA
*
8466611 GTATGGCAAGACAAGATCTGT
248 GTATGGCAAGACAAGATATGT
*
8466632 TATCTTTGATCTACTTC
1 TATCTTCGATCTACTTC
8466649 ACGCCAGTAC
Statistics
Matches: 472, Mismatches: 63, Indels: 34
0.83 0.11 0.06
Matches are distributed among these distances:
265 5 0.01
266 14 0.03
267 358 0.76
268 91 0.19
269 3 0.01
270 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.31
Consensus pattern (268 bp):
TATCTTCGATCTACTTCGCCACCAGTATGGGCAAACAAAATCTGTTATCTTTTATCTACTTCACG
CCAATACATGAAGACAAGATCTACTTTCTTCGATCTACTTCGCCACCAGTATGAGAAGACAAGAT
CTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTTTTCGATCTACTTC
GCCACCAGTATGGGAAGACAAGATCTGCTACCTTCGATCTACTTCACCACCAGTATGGCAAGACA
AGATATGT
Done.