Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47972186
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2603476 characters in sequence are not A, C, G, or T
File 23 of 145
Found at i:8854750 original size:44 final size:45
Alignment explanation
Indices: 8854702--8855379 Score: 550
Period size: 45 Copynumber: 15.2 Consensus size: 45
8854692 TCAGGGGGAT
* **
8854702 AAGATTTG-TATCTTCGATCTACTTCGCCACCAGTATGGGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTCGCCACCAGTACAGGAAGAC
* * * * **
8854746 AAGATCTGCTATCTTTGAGCCACTTCACTGCCAGTACAGGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTCGCCACCAGTACAGGAAGAC
* * * * **
8854791 AAGATCTGTTATCTTCGATCCACTTCACCACTAGTATGGGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTCGCCACCAGTACAGGAAGAC
* * * * **
8854836 AATATCTGCTATTTTTGATCTACTTCACTGCCAGTACAGGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTCGCCACCAGTACAGGAAGAC
* * * ** *
8854881 AAGGTCTGTTATCTTCGATCTACTTCACTGCCAATACAGGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTCGCCACCAGTACAGGAAGAC
* *
8854926 AAGATCTGCTATCTTTGATCTACTTCATGCCA--A-TACATGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTC--GCCACCAGTACAGGAAGAC
* * * *
8854970 AAGATCTGCTTTCTTCGATCTATTTTGCCACCAGTATAGGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTCGCCACCAGTACAGGAAGAC
* *
8855015 AAGATCTGCTATCTTTGATCTACTTCATGCCA--A-TACATGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTC--GCCACCAGTACAGGAAGAC
**
8855059 AAGATCTG-TCATCTTCGATCTACTTCATGCCA--A-TACATAAAGAC
1 AAGATCTGCT-ATCTTCGATCTACTTC--GCCACCAGTACAGGAAGAC
* * * * **
8855103 AAGATCTGCTTTTTTCGATCTACTTTGCCACTAGTATGGGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTCGCCACCAGTACAGGAAGAC
* **
8855148 AAGATCTGCTATCTTCAATCTACTTCATGCCA--A-TACATAAAGAC
1 AAGATCTGCTATCTTCGATCTACTTC--GCCACCAGTACAGGAAGAC
* * **
8855192 AAGATCTGCCATCTTCGATTTACTTCATGCCA--A-TACATAAAGAC
1 AAGATCTGCTATCTTCGATCTACTTC--GCCACCAGTACAGGAAGAC
* *
8855236 AAGATCTGCTATCTTCGATCTACTTCATGCCA--A-TACATGAAGAT
1 AAGATCTGCTATCTTCGATCTACTTC--GCCACCAGTACAGGAAGAC
* **
8855280 AAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTCGCCACCAGTACAGGAAGAC
* * * * *
8855325 AAGATCTGTTATCTTCGATCCACTTCGCTACCAATATAGGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTCGCCACCAGTACAGGAAGAC
*
8855370 AGGATCTGCT
1 AAGATCTGCT
8855380 GCTTTTCAAC
Statistics
Matches: 527, Mismatches: 89, Indels: 35
0.81 0.14 0.05
Matches are distributed among these distances:
42 12 0.02
43 1 0.00
44 225 0.43
45 280 0.53
47 9 0.02
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (45 bp):
AAGATCTGCTATCTTCGATCTACTTCGCCACCAGTACAGGAAGAC
Found at i:8855102 original size:133 final size:133
Alignment explanation
Indices: 8854712--8855350 Score: 729
Period size: 133 Copynumber: 4.8 Consensus size: 133
8854702 AAGATTTGTA
* * * * *
8854712 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATCTTTGAGCCACTTCACTGC
1 TCTTCGATCTACTTTGCCACCAGTATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCA-TGC
* * * * * * *
8854777 CAGTACAGGAAGACAAGATCTGTTATCTTCGATCCACTTCA--CCACTAGTATGGGAAGACAATA
65 CAATACAGGAAGACAAGATCTGTCATCTTCGATCTACTTCATGCCAATA-CAT--AAAGACAAGA
8854840 TCTGCTAT
127 TCTGCT-T
* ** ** * * *
8854848 T-TTTGATCTACTTCACTGCCAGTACAGGAAGACAAGGTCTGTTATCTTCGATCTACTTCACTGC
1 TCTTCGATCTACTTTGCCACCAGTATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCA-TGC
* *
8854912 CAATACAGGAAGACAAGATCTG-CTATCTTTGATCTACTTCATGCCAATACATGAAGACAAGATC
65 CAATACAGGAAGACAAGATCTGTC-ATCTTCGATCTACTTCATGCCAATACATAAAGACAAGATC
8854976 TGCTT
129 TGCTT
* *
8854981 TCTTCGATCTATTTTGCCACCAGTATAGGAAGACAAGATCTGCTATCTTTGATCTACTTCATGCC
1 TCTTCGATCTACTTTGCCACCAGTATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCATGCC
*
8855046 AATACATGAAGACAAGATCTGTCATCTTCGATCTACTTCATGCCAATACATAAAGACAAGATCTG
66 AATACAGGAAGACAAGATCTGTCATCTTCGATCTACTTCATGCCAATACATAAAGACAAGATCTG
8855111 CTT
131 CTT
* * * *
8855114 TTTTCGATCTACTTTGCCACTAGTATGGGAAGACAAGATCTGCTATCTTCAATCTACTTCATGCC
1 TCTTCGATCTACTTTGCCACCAGTATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCATGCC
** * *
8855179 AATACATAAAGACAAGATCTGCCATCTTCGATTTACTTCATGCCAATACATAAAGACAAGATCTG
66 AATACAGGAAGACAAGATCTGTCATCTTCGATCTACTTCATGCCAATACATAAAGACAAGATCTG
*
8855244 CTA
131 CTT
* * * *
8855247 TCTTCGATCTACTTCATGCCA--A-TACATGAAGATAAGATCTGCTTTCTTCGATCTACTTC--G
1 TCTTCGATCTACTT--TGCCACCAGTATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCATG
** * *
8855307 CCACCAGTATGGGAAGACAAGATCTGTTATCTTCGATCCACTTC
64 CCA--A-TACAGGAAGACAAGATCTGTCATCTTCGATCTACTTC
8855351 GCTACCAATA
Statistics
Matches: 437, Mismatches: 56, Indels: 23
0.85 0.11 0.04
Matches are distributed among these distances:
130 4 0.01
132 32 0.07
133 235 0.54
134 65 0.15
135 93 0.21
136 3 0.01
137 5 0.01
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (133 bp):
TCTTCGATCTACTTTGCCACCAGTATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCATGCC
AATACAGGAAGACAAGATCTGTCATCTTCGATCTACTTCATGCCAATACATAAAGACAAGATCTG
CTT
Found at i:8856680 original size:6 final size:6
Alignment explanation
Indices: 8856671--8856709 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
8856661 TGGCCTCTCA
*
8856671 TTTCTT TTTCTT TTTCTT TTTCTT TTTCCT TTTCTT TTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTT
8856710 TCATCATTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTCTT
Found at i:8857349 original size:18 final size:18
Alignment explanation
Indices: 8857323--8857365 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
8857313 TGGTTTGGCA
*
8857323 GAAAAAATCCAAAAGAAT
1 GAAAGAATCCAAAAGAAT
**
8857341 GAAAGAATCGTAAAGAAT
1 GAAAGAATCCAAAAGAAT
8857359 GAAAGAA
1 GAAAGAA
8857366 CATTTGCTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.63, C:0.07, G:0.19, T:0.12
Consensus pattern (18 bp):
GAAAGAATCCAAAAGAAT
Found at i:8859196 original size:19 final size:20
Alignment explanation
Indices: 8859172--8859217 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
8859162 TAACGGTGTT
* *
8859172 TAATGCATATG-ATGTAATG
1 TAATGCAAATGCATGAAATG
8859191 TAATGCAAATGCATGAAATG
1 TAATGCAAATGCATGAAATG
8859211 -AATGCAA
1 TAATGCAA
8859218 GAAAGAGACG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.43, C:0.09, G:0.20, T:0.28
Consensus pattern (20 bp):
TAATGCAAATGCATGAAATG
Found at i:8859264 original size:14 final size:14
Alignment explanation
Indices: 8859245--8859271 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8859235 TGGTTCAATT
8859245 CTTTACTAGAAAAA
1 CTTTACTAGAAAAA
8859259 CTTTACTAGAAAA
1 CTTTACTAGAAAA
8859272 CAAATCTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.15, G:0.07, T:0.30
Consensus pattern (14 bp):
CTTTACTAGAAAAA
Found at i:8859685 original size:16 final size:16
Alignment explanation
Indices: 8859664--8859697 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
8859654 TTCTATAATG
8859664 AAATGCCATGCAGTCA
1 AAATGCCATGCAGTCA
8859680 AAATGCCATGCAGTCA
1 AAATGCCATGCAGTCA
8859696 AA
1 AA
8859698 GTGAAACACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.41, C:0.24, G:0.18, T:0.18
Consensus pattern (16 bp):
AAATGCCATGCAGTCA
Found at i:8861211 original size:49 final size:48
Alignment explanation
Indices: 8861149--8861241 Score: 150
Period size: 49 Copynumber: 1.9 Consensus size: 48
8861139 CATATACTAC
*
8861149 ATAAAAGATGCATATATATATTATAAAAAAACCATGCGAGTATGTTAT
1 ATAAAAGATGCATATATATATTATAAAAAAACAATGCGAGTATGTTAT
* *
8861197 ATAAAAGCATGCATATATATATTATATAAAAACAATGCGTGTATG
1 ATAAAAG-ATGCATATATATATTATAAAAAAACAATGCGAGTATG
8861242 AATATAGAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
48 7 0.17
49 34 0.83
ACGTcount: A:0.47, C:0.09, G:0.13, T:0.31
Consensus pattern (48 bp):
ATAAAAGATGCATATATATATTATAAAAAAACAATGCGAGTATGTTAT
Found at i:8870523 original size:22 final size:23
Alignment explanation
Indices: 8870497--8870555 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 23
8870487 GGATGGTGAT
* *
8870497 GTTAAATTCATTAAGCATGATTA
1 GTTAAATTAATTAAGCATAATTA
* *
8870520 -TTAAGTTAATTAAGTATAATTA
1 GTTAAATTAATTAAGCATAATTA
8870542 GTTAAATTAATTAA
1 GTTAAATTAATTAA
8870556 ATCTTAATTA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
22 18 0.60
23 12 0.40
ACGTcount: A:0.44, C:0.03, G:0.10, T:0.42
Consensus pattern (23 bp):
GTTAAATTAATTAAGCATAATTA
Found at i:8877461 original size:16 final size:16
Alignment explanation
Indices: 8877436--8877481 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
8877426 ATTCAGCTTG
*
8877436 TAGCTTGCACTTTTCA
1 TAGCTCGCACTTTTCA
8877452 TAGCTCGCACATTTATCA
1 TAGCTCGCAC-TTT-TCA
8877470 -A-CTCGCACTTTT
1 TAGCTCGCACTTTT
8877482 GTTGAGTTCG
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 1 0.04
15 3 0.11
16 16 0.59
17 4 0.15
18 3 0.11
ACGTcount: A:0.22, C:0.28, G:0.11, T:0.39
Consensus pattern (16 bp):
TAGCTCGCACTTTTCA
Found at i:8879514 original size:18 final size:17
Alignment explanation
Indices: 8879447--8879566 Score: 73
Period size: 17 Copynumber: 7.0 Consensus size: 17
8879437 GCAGCTTTAA
* *
8879447 TGAGCTCACACTATTGG
1 TGAGCTCACAATTTTGG
* * * *
8879464 AGAGCTCATAGTCTTGG
1 TGAGCTCACAATTTTGG
*
8879481 TGAGCTCAGAATTTTGGG
1 TGAGCTCACAATTTT-GG
8879499 TGAGCTCACACA-TTTGG
1 TGAGCTCACA-ATTTTGG
** * *
8879516 TGAGCTCGTAGTCTTGG
1 TGAGCTCACAATTTTGG
* *
8879533 TAAGCTCACAGA-TATGG
1 TGAGCTCACA-ATTTTGG
*
8879550 TGAGCTCACAAATTTGG
1 TGAGCTCACAATTTTGG
8879567 GTTAGCTTGC
Statistics
Matches: 77, Mismatches: 21, Indels: 10
0.71 0.19 0.09
Matches are distributed among these distances:
16 1 0.01
17 61 0.79
18 14 0.18
19 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (17 bp):
TGAGCTCACAATTTTGG
Found at i:8882205 original size:21 final size:20
Alignment explanation
Indices: 8882176--8882215 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
8882166 TAGGGTTGTT
* *
8882176 ATTTTATTTTTATTTTTTTTC
1 ATTTGATTTTT-TTTATTTTC
8882197 ATTTGATTTTTTTTATTTT
1 ATTTGATTTTTTTTATTTT
8882216 AGGTTGGGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.80
Consensus pattern (20 bp):
ATTTGATTTTTTTTATTTTC
Found at i:8884415 original size:24 final size:23
Alignment explanation
Indices: 8884388--8884463 Score: 73
Period size: 24 Copynumber: 3.2 Consensus size: 23
8884378 AGATATTTAT
*
8884388 ATTATTTATTTATATAATATATAA
1 ATTAATTATTTATATAATAT-TAA
** *
8884412 ATTAATTATAAAGTATATTATTAA
1 ATTAATTATTTA-TATAATATTAA
*
8884436 ATTAATTATATTATA-AATATTAT
1 ATTAATTAT-TTATATAATATTAA
8884459 ATTAA
1 ATTAA
8884464 GAAATAAATT
Statistics
Matches: 42, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
23 11 0.26
24 23 0.55
25 8 0.19
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (23 bp):
ATTAATTATTTATATAATATTAA
Found at i:8884431 original size:12 final size:11
Alignment explanation
Indices: 8884402--8884445 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 11
8884392 TTTATTTATA
8884402 TAATATATAAAT
1 TAAT-TATAAAT
*
8884414 TAATTATAAAG
1 TAATTATAAAT
8884425 TATATTATTAAAT
1 TA-ATTA-TAAAT
8884438 TAATTATA
1 TAATTATA
8884446 TTATAAATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
11 10 0.36
12 12 0.43
13 6 0.21
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (11 bp):
TAATTATAAAT
Found at i:8884457 original size:14 final size:17
Alignment explanation
Indices: 8884425--8884462 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 17
8884415 AATTATAAAG
8884425 TATATTATTAAATTAAT
1 TATATTATTAAATTAAT
8884442 TATATTA-TAAA-T-AT
1 TATATTATTAAATTAAT
8884456 TATATTA
1 TATATTA
8884463 AGAAATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 9 0.43
15 1 0.05
16 4 0.19
17 7 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TATATTATTAAATTAAT
Found at i:8884699 original size:15 final size:17
Alignment explanation
Indices: 8884681--8884712 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8884671 CAGAATAGAA
8884681 AGAA-CAAA-GAAACAG
1 AGAAGCAAACGAAACAG
8884696 AGAAGCAAACGAAACAG
1 AGAAGCAAACGAAACAG
8884713 GGGAAGAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.27
16 4 0.27
17 7 0.47
ACGTcount: A:0.62, C:0.16, G:0.22, T:0.00
Consensus pattern (17 bp):
AGAAGCAAACGAAACAG
Found at i:8890933 original size:12 final size:12
Alignment explanation
Indices: 8890916--8890958 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
8890906 ATGTGAAGTA
8890916 AGTATTAATATT
1 AGTATTAATATT
*
8890928 AGTATTAATATA
1 AGTATTAATATT
* *
8890940 ATTATTAGTATT
1 AGTATTAATATT
*
8890952 ATTATTA
1 AGTATTA
8890959 TTATGAGTGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (12 bp):
AGTATTAATATT
Found at i:8890947 original size:18 final size:18
Alignment explanation
Indices: 8890924--8890962 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
8890914 TAAGTATTAA
8890924 TATTAGTATTAATATAAT
1 TATTAGTATTAATATAAT
* *
8890942 TATTAGTATTATTATTAT
1 TATTAGTATTAATATAAT
8890960 TAT
1 TAT
8890963 GAGTGGGAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (18 bp):
TATTAGTATTAATATAAT
Found at i:8903546 original size:14 final size:15
Alignment explanation
Indices: 8903516--8903547 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
8903506 AACAAGCTGC
8903516 TTTTGACTGAAATTT
1 TTTTGACTGAAATTT
8903531 TTTTGACTGAAATTT
1 TTTTGACTGAAATTT
8903546 TT
1 TT
8903548 AACTTTTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.06, G:0.12, T:0.56
Consensus pattern (15 bp):
TTTTGACTGAAATTT
Found at i:8903999 original size:33 final size:35
Alignment explanation
Indices: 8903962--8904058 Score: 89
Period size: 33 Copynumber: 2.8 Consensus size: 35
8903952 ATGGTTATAT
8903962 TTAAATATTTAAAATATAATTTATATATT-C-TAA
1 TTAAATATTTAAAATATAATTTATATATTGCTTAA
* *
8903995 TTAAAT-TTTATAA-ATAATTAATATTTATTGCTTAA
1 TTAAATATTTAAAATATAATT--TATATATTGCTTAA
*
8904030 --AAATATTTAAAATTTATATTTTATATATT
1 TTAAATATTTAAAA--TATAATTTATATATT
8904059 AAAATATTAA
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
31 6 0.12
32 6 0.12
33 17 0.33
34 7 0.14
35 10 0.20
37 5 0.10
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.52
Consensus pattern (35 bp):
TTAAATATTTAAAATATAATTTATATATTGCTTAA
Found at i:8904245 original size:13 final size:13
Alignment explanation
Indices: 8904229--8904262 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
8904219 TTTAAACCAA
8904229 ATTTTTTAAAAAT
1 ATTTTTTAAAAAT
* *
8904242 ATTTCTCAAAAAT
1 ATTTTTTAAAAAT
8904255 ATTTTTTA
1 ATTTTTTA
8904263 CACCACTTTT
Statistics
Matches: 17, Mismatches: 4, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (13 bp):
ATTTTTTAAAAAT
Found at i:8905922 original size:3 final size:3
Alignment explanation
Indices: 8905914--8905940 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
8905904 ATATTTTTGC
8905914 CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT
8905941 TTTTCTACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:8908867 original size:26 final size:26
Alignment explanation
Indices: 8908837--8908886 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
8908827 TAAATATTTA
*
8908837 TTTTTAATTTTTTA-TTTTAAAATAC
1 TTTTTTATTTTTTATTTTTAAAATAC
8908862 TTTTTTATTTTTTATTTTTAAAATA
1 TTTTTTATTTTTTATTTTTAAAATA
8908887 AATTTTTGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (26 bp):
TTTTTTATTTTTTATTTTTAAAATAC
Found at i:8908892 original size:25 final size:26
Alignment explanation
Indices: 8908838--8908892 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
8908828 AAATATTTAT
*
8908838 TTTTAATTTTTTATTTTAAAATAC-T
1 TTTTAATTTTTTATTTTAAAATACAA
*
8908863 TTTTTATTTTTTATTTTTAAAATA-AA
1 TTTTAATTTTTTA-TTTTAAAATACAA
8908889 TTTT
1 TTTT
8908893 TGGTGTTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 12 0.46
26 14 0.54
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (26 bp):
TTTTAATTTTTTATTTTAAAATACAA
Found at i:8908892 original size:26 final size:26
Alignment explanation
Indices: 8908836--8908893 Score: 82
Period size: 25 Copynumber: 2.2 Consensus size: 26
8908826 ATAAATATTT
8908836 ATTTTTAATTTTTTATTTTAAAAT-A
1 ATTTTTAATTTTTTATTTTAAAATAA
* *
8908861 CTTTTTTATTTTTTATTTTTAAAATAA
1 ATTTTTAATTTTTTA-TTTTAAAATAA
8908888 ATTTTT
1 ATTTTT
8908894 GGTGTTTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 13 0.46
26 9 0.32
27 6 0.21
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (26 bp):
ATTTTTAATTTTTTATTTTAAAATAA
Found at i:8910953 original size:2 final size:2
Alignment explanation
Indices: 8910946--8910970 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8910936 ATTTTGTAAG
8910946 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
8910971 GTTGTTGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8914698 original size:24 final size:24
Alignment explanation
Indices: 8914647--8914708 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
8914637 TAGCTCGAAA
* * *
8914647 GAGCGTCCCATTATTAGCTCTCAT
1 GAGCATCCCGTTATTAGCCCTCAT
8914671 GAGCATCCCGTTATTAGCCCTC-T
1 GAGCATCCCGTTATTAGCCCTCAT
*
8914694 CGAGCTTCCCGTTAT
1 -GAGCATCCCGTTAT
8914709 ATAGTTCTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
23 1 0.03
24 32 0.97
ACGTcount: A:0.18, C:0.32, G:0.18, T:0.32
Consensus pattern (24 bp):
GAGCATCCCGTTATTAGCCCTCAT
Found at i:8914954 original size:73 final size:75
Alignment explanation
Indices: 8914810--8914965 Score: 185
Period size: 73 Copynumber: 2.1 Consensus size: 75
8914800 AGCGTCTCGT
* * * * * *
8914810 TATATGGCTCTTCGTGAGCTTCCTGATTAAAGGCTCTTTGTGAGCTTCCCGATATGGCTTGCCTA
1 TATATGGCTATCCGTGAGCTTCCTGATTAAAGGCTCTTCGTGAGCTACCCGATATGGCTCGCATA
8914875 AACTTCCCGA
66 AACTTCCCGA
* *
8914885 TATATGGCTATCCG-GAGCTTCCTG-TTAATGGCTCTTCG-GAGCTACCCGTTATAGGCTCGCAT
1 TATATGGCTATCCGTGAGCTTCCTGATTAAAGGCTCTTCGTGAGCTACCCGATAT-GGCTCGCAT
* *
8914947 GAGCTTCCCGA
65 AAACTTCCCGA
8914958 T-TATGGCT
1 TATATGGCT
8914966 CTTATGAACT
Statistics
Matches: 70, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
72 19 0.27
73 29 0.41
74 10 0.14
75 12 0.17
ACGTcount: A:0.18, C:0.26, G:0.23, T:0.33
Consensus pattern (75 bp):
TATATGGCTATCCGTGAGCTTCCTGATTAAAGGCTCTTCGTGAGCTACCCGATATGGCTCGCATA
AACTTCCCGA
Found at i:8914972 original size:24 final size:24
Alignment explanation
Indices: 8914791--8914977 Score: 78
Period size: 24 Copynumber: 7.6 Consensus size: 24
8914781 ACACACCGCA
* * *
8914791 GCTCTTATGAGCGTCTCGTTATATG
1 GCTCTTATGAGCTTCCCGAT-TATG
* * *
8914816 GCTCTTCGTGAGCTTCCTGATTAAAG
1 GCTCTT-ATGAGCTTCCCGATT-ATG
*
8914842 GCTCTTTGTGAGCTTCCCGA-TATG
1 GCTC-TTATGAGCTTCCCGATTATG
* *
8914866 GCTTGCCTA--AACTTCCCGATATATG
1 GC-T-CTTATGAGCTTCCCGAT-TATG
* *** *
8914891 GCTATCCGGAGCTTCCTG-TTAATG
1 GCTCTTATGAGCTTCCCGATT-ATG
** *
8914915 GCTCTTCGGAGCTACCCG-TTATAG
1 GCTCTTATGAGCTTCCCGATTAT-G
**
8914939 GCTCGCATGAGCTTCCCGATTATG
1 GCTCTTATGAGCTTCCCGATTATG
*
8914963 GCTCTTATGAACTTC
1 GCTCTTATGAGCTTC
8914978 TCGTATTACA
Statistics
Matches: 121, Mismatches: 29, Indels: 25
0.69 0.17 0.14
Matches are distributed among these distances:
23 12 0.10
24 52 0.43
25 27 0.22
26 28 0.23
27 2 0.02
ACGTcount: A:0.18, C:0.26, G:0.22, T:0.34
Consensus pattern (24 bp):
GCTCTTATGAGCTTCCCGATTATG
Found at i:8921616 original size:42 final size:42
Alignment explanation
Indices: 8921524--8921702 Score: 153
Period size: 42 Copynumber: 4.3 Consensus size: 42
8921514 CCGAAGGCTG
** * * * *
8921524 AACAGAAGCTCATGAGAGCTAAACAGAAACCCATAAGGGTTG
1 AACAGAAGCTCAAAAGAGCTGAACAAAAACCCATAAGAGTTA
* * ** *
8921566 ATCGGAAGCTCGCAAGAGCTGAACAAAAACCCATAAGGGTTA
1 AACAGAAGCTCAAAAGAGCTGAACAAAAACCCATAAGAGTTA
* * * * *
8921608 AACAGAAGCTCAATAGAGCTGAA-AGGAAACTCATATGAGTTG
1 AACAGAAGCTCAAAAGAGCTGAACA-AAAACCCATAAGAGTTA
* * * *
8921650 AACAGAAGCTCAAAAGTGCTGAACGAAAACTCATATGAGTTA
1 AACAGAAGCTCAAAAGAGCTGAACAAAAACCCATAAGAGTTA
*
8921692 AACTGAAGCTC
1 AACAGAAGCTC
8921703 GTGAGAGCTA
Statistics
Matches: 111, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
41 1 0.01
42 110 0.99
ACGTcount: A:0.42, C:0.18, G:0.22, T:0.17
Consensus pattern (42 bp):
AACAGAAGCTCAAAAGAGCTGAACAAAAACCCATAAGAGTTA
Found at i:8921661 original size:21 final size:21
Alignment explanation
Indices: 8921608--8921702 Score: 61
Period size: 21 Copynumber: 4.5 Consensus size: 21
8921598 ATAAGGGTTA
8921608 AACAGAAGCTCA-ATAGAGCTG
1 AACAGAAGCTCATAT-GAGCTG
* *
8921629 AA-AGGAAACTCATATGAGTTG
1 AACA-GAAGCTCATATGAGCTG
* * *
8921650 AACAGAAGCTCAAAAGTGCTG
1 AACAGAAGCTCATATGAGCTG
* * *
8921671 AAC-GAAAACTCATATGAGTTA
1 AACAG-AAGCTCATATGAGCTG
*
8921692 AACTGAAGCTC
1 AACAGAAGCTC
8921703 GTGAGAGCTA
Statistics
Matches: 55, Mismatches: 14, Indels: 10
0.70 0.18 0.13
Matches are distributed among these distances:
20 2 0.04
21 49 0.89
22 4 0.07
ACGTcount: A:0.43, C:0.17, G:0.21, T:0.19
Consensus pattern (21 bp):
AACAGAAGCTCATATGAGCTG
Found at i:8921671 original size:84 final size:84
Alignment explanation
Indices: 8921524--8921720 Score: 218
Period size: 84 Copynumber: 2.3 Consensus size: 84
8921514 CCGAAGGCTG
* * * **
8921524 AACAGAAGCTCATGAGAGCTAAACAGAAACCCATAAGGGTTGATCGGAAGCTCGCAAGAGCTGAA
1 AACAGAAGCTCATGAGAGCTAAACAGAAACCCATAAGAGTTGAACAGAAGCTCAAAAGAGCTGAA
*
8921589 CAAAAACCCATAAGGGTTA
66 CAAAAACCCATAAGAGTTA
* * * *
8921608 AACAGAAGCTCAAT-AGAGCTGAAA-GGAAACTCATATGAGTTGAACAGAAGCTCAAAAGTGCTG
1 AACAGAAGCTC-ATGAGAGCT-AAACAGAAACCCATAAGAGTTGAACAGAAGCTCAAAAGAGCTG
* * *
8921671 AACGAAAACTCATATGAGTTA
64 AACAAAAACCCATAAGAGTTA
* * *
8921692 AACTGAAGCTCGTGAGAGCTAAACGGAAA
1 AACAGAAGCTCATGAGAGCTAAACAGAAA
8921721 GTAAACATGA
Statistics
Matches: 94, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
83 4 0.04
84 85 0.90
85 5 0.05
ACGTcount: A:0.43, C:0.18, G:0.23, T:0.16
Consensus pattern (84 bp):
AACAGAAGCTCATGAGAGCTAAACAGAAACCCATAAGAGTTGAACAGAAGCTCAAAAGAGCTGAA
CAAAAACCCATAAGAGTTA
Found at i:8922343 original size:16 final size:16
Alignment explanation
Indices: 8922322--8922352 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8922312 ATTTGGTCCT
8922322 AAAATTAATATCTAAC
1 AAAATTAATATCTAAC
*
8922338 AAAATTATTATCTAA
1 AAAATTAATATCTAA
8922353 AATCATCAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.35
Consensus pattern (16 bp):
AAAATTAATATCTAAC
Found at i:8925265 original size:20 final size:21
Alignment explanation
Indices: 8925215--8925282 Score: 61
Period size: 21 Copynumber: 3.3 Consensus size: 21
8925205 TAAAAATATA
*
8925215 AATTCTGAAATTTTTATAAA-T
1 AATT-TGAAATTTTTAAAAACT
** *
8925236 -ATTTTTAA-TTTTAAAAATT
1 AATTTGAAATTTTTAAAAACT
*
8925255 AATTTGAAATTTTTGAAAACT
1 AATTTGAAATTTTTAAAAACT
8925276 AATTTGA
1 AATTTGA
8925283 TTTTTCTTCT
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
18 8 0.22
19 4 0.11
20 9 0.24
21 16 0.43
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.49
Consensus pattern (21 bp):
AATTTGAAATTTTTAAAAACT
Found at i:8931004 original size:2 final size:2
Alignment explanation
Indices: 8930997--8931035 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
8930987 ACAAATCTTT
8930997 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
8931036 TTTGTCTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:8940158 original size:3 final size:3
Alignment explanation
Indices: 8940150--8940181 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
8940140 ACAAATTATT
*
8940150 TAA TAA TAA CAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
8940182 CATAGAAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:8940616 original size:21 final size:21
Alignment explanation
Indices: 8940573--8940620 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
8940563 TAATAAAATA
*
8940573 TTAAAAAATAAATATTTTCTT
1 TTAAAAAATAAATATTATCTT
* *
8940594 TTAAAAAATACATATTAATTTT
1 TTAAAAAATAAATATT-ATCTT
8940616 TTAAA
1 TTAAA
8940621 GTTGTTTGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 15 0.65
22 8 0.35
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (21 bp):
TTAAAAAATAAATATTATCTT
Found at i:8942133 original size:13 final size:13
Alignment explanation
Indices: 8942117--8942141 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8942107 TTTAGTTATA
8942117 TTTTTTCTTTCTT
1 TTTTTTCTTTCTT
8942130 TTTTTTCTTTCT
1 TTTTTTCTTTCT
8942142 CCTCTCTATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTTTTCTTTCTT
Found at i:8945910 original size:17 final size:17
Alignment explanation
Indices: 8945888--8945921 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8945878 GAATGGTCTC
*
8945888 TGTTTCTTTTCTTCTTT
1 TGTTTCTTTTATTCTTT
8945905 TGTTTCTTTTATTCTTT
1 TGTTTCTTTTATTCTTT
8945922 CATTTTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.03, C:0.15, G:0.06, T:0.76
Consensus pattern (17 bp):
TGTTTCTTTTATTCTTT
Found at i:8950974 original size:13 final size:13
Alignment explanation
Indices: 8950958--8950995 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
8950948 AGTTCTTCAT
8950958 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
8950971 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
*
8950984 TACTTTTGAGAA
1 TGCTTTTGAGAA
8950996 ATTTGAGTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.26, C:0.08, G:0.26, T:0.39
Consensus pattern (13 bp):
TGCTTTTGAGAAG
Found at i:8952513 original size:14 final size:14
Alignment explanation
Indices: 8952494--8952524 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
8952484 TCGAAGAAGA
8952494 ATATGACATCAGGG
1 ATATGACATCAGGG
8952508 ATATGACATCAGGG
1 ATATGACATCAGGG
8952522 ATA
1 ATA
8952525 GAGAAGGGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.39, C:0.13, G:0.26, T:0.23
Consensus pattern (14 bp):
ATATGACATCAGGG
Found at i:8952925 original size:14 final size:13
Alignment explanation
Indices: 8952895--8952921 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8952885 AAATATAATT
8952895 ATAATCCCATTAA
1 ATAATCCCATTAA
8952908 ATAATCCCATTAA
1 ATAATCCCATTAA
8952921 A
1 A
8952922 ATAAGTAACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (13 bp):
ATAATCCCATTAA
Found at i:8955726 original size:17 final size:16
Alignment explanation
Indices: 8955695--8955738 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
8955685 GATTTATTTA
8955695 ATAATATAATATCATT
1 ATAATATAATATCATT
*
8955711 ATAATTTAATTATCATT
1 ATAATATAA-TATCATT
*
8955728 AATTATATAAT
1 -ATAATATAAT
8955739 TAAACTAACT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
16 8 0.35
17 8 0.35
18 7 0.30
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (16 bp):
ATAATATAATATCATT
Found at i:8965955 original size:21 final size:20
Alignment explanation
Indices: 8965931--8966021 Score: 76
Period size: 21 Copynumber: 4.3 Consensus size: 20
8965921 CACAAAAGCA
8965931 CATAAGTGCTGAACAGAAACC
1 CATAAG-GCTGAACAGAAACC
* *
8965952 CATAAAGGTTGAACGGAAACC
1 CAT-AAGGCTGAACAGAAACC
* * *
8965973 CATAAGGGTTAA-ACTAAACC
1 CATAAGGCTGAACA-GAAACC
*
8965993 TCAAAAGAGCTGAACAGAAACC
1 -CATAAG-GCTGAACAGAAACC
8966015 CATAAGG
1 CATAAGG
8966022 GTTAAACTGA
Statistics
Matches: 54, Mismatches: 11, Indels: 11
0.71 0.14 0.14
Matches are distributed among these distances:
20 13 0.24
21 28 0.52
22 12 0.22
23 1 0.02
ACGTcount: A:0.45, C:0.21, G:0.20, T:0.14
Consensus pattern (20 bp):
CATAAGGCTGAACAGAAACC
Found at i:8966007 original size:42 final size:42
Alignment explanation
Indices: 8965961--8966076 Score: 187
Period size: 42 Copynumber: 2.7 Consensus size: 42
8965951 CCATAAAGGT
8965961 TGAACGGAAACCCATAAGGGTTAAACTAAACCTCAAAAGAGC
1 TGAACGGAAACCCATAAGGGTTAAACTAAACCTCAAAAGAGC
* * *
8966003 TGAACAGAAACCCATAAGGGTTAAACTGAAGCTCAAAAGAGC
1 TGAACGGAAACCCATAAGGGTTAAACTAAACCTCAAAAGAGC
*
8966045 TGAACGAAAACCCATAAGGGTTAAACTGAAAC
1 TGAACGGAAACCCATAAGGGTTAAACT-AAAC
8966077 TCATATGAGT
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
42 64 0.97
43 2 0.03
ACGTcount: A:0.46, C:0.20, G:0.20, T:0.15
Consensus pattern (42 bp):
TGAACGGAAACCCATAAGGGTTAAACTAAACCTCAAAAGAGC
Found at i:8966081 original size:21 final size:21
Alignment explanation
Indices: 8965946--8966081 Score: 105
Period size: 21 Copynumber: 6.5 Consensus size: 21
8965936 GTGCTGAACA
* * *
8965946 GAAACCCATAAAGGTTGAACG
1 GAAACCCATAAGGGTTAAACT
8965967 GAAACCCATAAGGGTTAAACT
1 GAAACCCATAAGGGTTAAACT
* * * * *
8965988 -AAACCTCAAAAGAGCTGAACA
1 GAAACC-CATAAGGGTTAAACT
8966009 GAAACCCATAAGGGTTAAACT
1 GAAACCCATAAGGGTTAAACT
* * * * * *
8966030 GAAGCTCAAAAGAGCTGAAC-
1 GAAACCCATAAGGGTTAAACT
8966050 GAAAACCCATAAGGGTTAAACT
1 G-AAACCCATAAGGGTTAAACT
*
8966072 GAAACTCATA
1 GAAACCCATA
8966082 TGAGTTAATA
Statistics
Matches: 85, Mismatches: 26, Indels: 8
0.71 0.22 0.07
Matches are distributed among these distances:
20 6 0.07
21 73 0.86
22 6 0.07
ACGTcount: A:0.46, C:0.20, G:0.19, T:0.15
Consensus pattern (21 bp):
GAAACCCATAAGGGTTAAACT
Found at i:8974626 original size:50 final size:51
Alignment explanation
Indices: 8974482--8974629 Score: 174
Period size: 50 Copynumber: 2.9 Consensus size: 51
8974472 TAAATGATAC
* * **
8974482 CCGGTTCACATAGTAGCCTGCACATAGTACTACACACGTAATCGAAGCTATT
1 CCGGTACACATAGTAGCCTGCACATAGTACTACACACGTGA-CCTAGCTATT
* * *** *
8974534 -CGGTACGCATAGTAGCCTGCACATAGTACTATACATACGACCTATC-ATT
1 CCGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCTAGCTATT
*
8974583 CCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCTAGC
1 CCGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCTAGC
8974630 AACTTCACTC
Statistics
Matches: 78, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
49 3 0.04
50 42 0.54
51 33 0.42
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (51 bp):
CCGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCTAGCTATT
Found at i:8979043 original size:14 final size:14
Alignment explanation
Indices: 8979026--8979060 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
8979016 ATAAAATATA
*
8979026 AATTTATATTTAAT
1 AATTCATATTTAAT
*
8979040 AATTCATTTTTAAT
1 AATTCATATTTAAT
8979054 AATTCAT
1 AATTCAT
8979061 TAATAAATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (14 bp):
AATTCATATTTAAT
Found at i:8979061 original size:14 final size:14
Alignment explanation
Indices: 8979034--8979061 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8979024 TAAATTTATA
8979034 TTTAATAATTCATT
1 TTTAATAATTCATT
8979048 TTTAATAATTCATT
1 TTTAATAATTCATT
8979062 AATAAATTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTAATAATTCATT
Found at i:8979505 original size:19 final size:19
Alignment explanation
Indices: 8979483--8979520 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
8979473 TCCCTCATCC
8979483 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
8979502 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
8979521 ACTCTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:8981805 original size:43 final size:41
Alignment explanation
Indices: 8981696--8981821 Score: 107
Period size: 43 Copynumber: 3.0 Consensus size: 41
8981686 CGTACAATGC
* *
8981696 CAACGTCCCAGACGTGCTCTTACATGTAATCACATATCGATG
1 CAACGT-CCAGACGTGGTCTTACATGTAAACACATATCGATG
*
8981738 CCACTGTCCTAGACAG-GG-CTTTACATGTAAACACA-AGTCGATG
1 CAAC-GTCC-AGAC-GTGGTC-TTACATGTAAACACATA-TCGATG
*
8981781 TCAACGTCTCAGACGTGGTCTTACAAG-ATAACACATATCGA
1 -CAACGTC-CAGACGTGGTCTTACATGTA-AACACATATCGA
8981822 AAATCCTATG
Statistics
Matches: 68, Mismatches: 5, Indels: 21
0.72 0.05 0.22
Matches are distributed among these distances:
42 9 0.13
43 52 0.76
44 7 0.10
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (41 bp):
CAACGTCCAGACGTGGTCTTACATGTAAACACATATCGATG
Found at i:8986530 original size:17 final size:17
Alignment explanation
Indices: 8986508--8986549 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
8986498 GTTACAAAGG
8986508 ACACACGGTCGTGTGTC
1 ACACACGGTCGTGTGTC
8986525 ACACACGGTCGTGTGTC
1 ACACACGGTCGTGTGTC
8986542 ACACACGG
1 ACACACGG
8986550 CTGAGACACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (17 bp):
ACACACGGTCGTGTGTC
Found at i:8989194 original size:3 final size:3
Alignment explanation
Indices: 8989186--8989215 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
8989176 ATCATTTTTA
8989186 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8989216 ATTCACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:8989505 original size:20 final size:18
Alignment explanation
Indices: 8989464--8989507 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
8989454 GCTTTATTAT
* *
8989464 TATTGTCATTCATTGTTG
1 TATTGTCATTCATTATTC
8989482 TATTGTCATTCTCATTATTC
1 TATTGTCA-T-TCATTATTC
8989502 TATTGT
1 TATTGT
8989508 ATATATTAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 8 0.36
19 1 0.05
20 13 0.59
ACGTcount: A:0.18, C:0.14, G:0.11, T:0.57
Consensus pattern (18 bp):
TATTGTCATTCATTATTC
Found at i:8993437 original size:3 final size:3
Alignment explanation
Indices: 8993429--8993456 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
8993419 AATTAAAAAC
8993429 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
8993457 GGTAATAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:8994425 original size:17 final size:18
Alignment explanation
Indices: 8994403--8994437 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
8994393 TTGCCGCTTA
*
8994403 TTTCTCT-TTTTGTTTGT
1 TTTCTCTGTTGTGTTTGT
8994420 TTTCTCTGTTGTGTTTGT
1 TTTCTCTGTTGTGTTTGT
8994438 GGGTGTCTGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.00, C:0.11, G:0.17, T:0.71
Consensus pattern (18 bp):
TTTCTCTGTTGTGTTTGT
Found at i:9004402 original size:12 final size:12
Alignment explanation
Indices: 9004385--9004425 Score: 61
Period size: 12 Copynumber: 3.7 Consensus size: 12
9004375 TCAAATCCAA
9004385 TCAAAAAATATT
1 TCAAAAAATATT
9004397 TCAAAAAA-A--
1 TCAAAAAATATT
9004406 TCAAAAAATATT
1 TCAAAAAATATT
9004418 TCAAAAAA
1 TCAAAAAA
9004426 AATGAAAATG
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
9 8 0.31
10 1 0.04
11 1 0.04
12 16 0.62
ACGTcount: A:0.66, C:0.10, G:0.00, T:0.24
Consensus pattern (12 bp):
TCAAAAAATATT
Found at i:9004433 original size:21 final size:21
Alignment explanation
Indices: 9004383--9004426 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
9004373 GTTCAAATCC
9004383 AATCAAAAAATATTTCAAAAA
1 AATCAAAAAATATTTCAAAAA
9004404 AATCAAAAAATATTTCAAAAA
1 AATCAAAAAATATTTCAAAAA
9004425 AA
1 AA
9004427 ATGAAAATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.68, C:0.09, G:0.00, T:0.23
Consensus pattern (21 bp):
AATCAAAAAATATTTCAAAAA
Found at i:9004455 original size:6 final size:6
Alignment explanation
Indices: 9004446--9004491 Score: 51
Period size: 6 Copynumber: 8.0 Consensus size: 6
9004436 AAAATAATGA
* * *
9004446 AAAAAG -AAAAG AAAAAG AGAAGG AAAAAG -AAAAG GAAAAG AAAAAG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
9004492 GAGAGGCCAA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
5 10 0.30
6 23 0.70
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:9004460 original size:11 final size:11
Alignment explanation
Indices: 9004446--9004489 Score: 61
Period size: 11 Copynumber: 3.9 Consensus size: 11
9004436 AAAATAATGA
9004446 AAAAAGAAAAG
1 AAAAAGAAAAG
*
9004457 AAAAAGAGAAGG
1 AAAAAGA-AAAG
9004469 AAAAAGAAAAG
1 AAAAAGAAAAG
*
9004480 GAAAAGAAAA
1 AAAAAGAAAA
9004490 AGGAGAGGCC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
11 19 0.66
12 10 0.34
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:9004475 original size:18 final size:17
Alignment explanation
Indices: 9004447--9004491 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
9004437 AAATAATGAA
9004447 AAAAG-AAAAGAAAAAG
1 AAAAGAAAAAGAAAAAG
* *
9004463 AGAAGGAAAAAGAAAAGG
1 A-AAAGAAAAAGAAAAAG
9004481 AAAAGAAAAAG
1 AAAAGAAAAAG
9004492 GAGAGGCCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
16 1 0.04
17 12 0.50
18 11 0.46
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (17 bp):
AAAAGAAAAAGAAAAAG
Found at i:9007819 original size:7 final size:7
Alignment explanation
Indices: 9007802--9007834 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
9007792 TTGAGTCCTA
9007802 AAAAAAGG
1 AAAAAA-G
9007810 AAAAAAG
1 AAAAAAG
9007817 AAAAAAG
1 AAAAAAG
9007824 -AAAAAG
1 AAAAAAG
9007830 AAAAA
1 AAAAA
9007835 GGAGAGGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 6 0.25
7 12 0.50
8 6 0.25
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:9008736 original size:24 final size:24
Alignment explanation
Indices: 9008704--9008756 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
9008694 CTAAAAGTAT
9008704 AGTGGATTGAACCTTGAAGATTAA
1 AGTGGATTGAACCTTGAAGATTAA
*
9008728 AGTGGATTGAACCTTGAAGATTAT
1 AGTGGATTGAACCTTGAAGATTAA
9008752 AGTGG
1 AGTGG
9008757 GGGAAATCTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (24 bp):
AGTGGATTGAACCTTGAAGATTAA
Found at i:9009146 original size:44 final size:43
Alignment explanation
Indices: 9009084--9009974 Score: 307
Period size: 44 Copynumber: 19.9 Consensus size: 43
9009074 GAATATGGCG
9009084 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAA
* * * **
9009127 TAATCCTATCTCCCTGAAGTTGCAATGGAGCGGATTAAAGTTACA
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCA-A
* * * * * * **
9009172 AGTTTTATCTCCCTGAAGTTACGGTGGAGCAGACTGAAGAAAA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAA
* * *
9009215 CAAGTCTTATC-CCTCTGAAGTTGCAGTGGGGCAGACTGAAGATGGC-A
1 -AA-TCTTATCTCC-CTGAAGTTGCAGTGGAGCAGA-TTAA-A-GCCAA
*
9009262 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCCAA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAA
* * * * **
9009305 CAATCCTATCTCCCTGAGGTTGCAGTGGAGCGGATTGAAGTTACA
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCA-A
* * * ** *
9009350 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCA--A
* * * *
9009395 AATCTTATCTCCCTAAAGTTGCAATGGAACAGATTAAAGCTATA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCA-A
** * * * * *
9009439 AATCACAGATTTTATCTCTTTGAAGTTACAGTAGAGCAGA-TCATGGC-A
1 AAT--C-----TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAA
* * * * * * * *
9009487 GATCTTATCTCTCTGAAGGTGTAATGGAGCAGATTAAAACGATG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCA-A
* * * * *
9009531 AATCCTATACAT--CTGATGTTGCAGTAGG-TCGGATTAAATCTACCATTA
1 AATCTTAT-C-TCCCTGAAGTTGCAGT-GGAGCAGATTAAA---GCCA--A
* * * * * * **
9009579 CAAGTCTTATCTTCTTGAAGTTGTAGTGGAGTAGACTGAAGATATCA
1 -AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCA--A
* * * **
9009626 AACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCA-A
* * * * *
9009670 AATCTTATCCCCCTAAAGTTGCAGTGGGGCAAATTAAAACTGC-A
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC--CAA
* * * * * * **
9009714 AGTCTTGTCTCCTTGAAGTTGCAGTGGAGTAGACTGAAGATATCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCA--A
* * * *
9009759 AATCTCAT-TCCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATTACA
1 AATCTTATCT-CCCTGAAGTTGCAGTGGAGCAGATTAAAGC-------CA-A
* * * * * *
9009810 AATCTTATCTCTCTAAAGTTGCAGTAGAGTAGATCATAG-C-A
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAA
* * * * * *
9009851 AACCCTACCTCCCTAAAGTTGCAGTGGAGCAAATTCAAGCCACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCA-A
* * * **
9009895 AACCTTATC-CTCCTGAAG-TGCAGTGGAGCAGGTTGAAG-TTA
1 AATCTTATCTC-CCTGAAGTTGCAGTGGAGCAGATTAAAGCCAA
* * * *
9009936 AGTCTTATCTCTCTGAAGTTGCAGTGGAGTATATTAAAG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG
9009975 ATAGCGAGTC
Statistics
Matches: 620, Mismatches: 173, Indels: 110
0.69 0.19 0.12
Matches are distributed among these distances:
41 67 0.11
42 22 0.04
43 21 0.03
44 248 0.40
45 155 0.25
46 10 0.02
47 8 0.01
48 6 0.01
49 5 0.01
50 23 0.04
51 52 0.08
52 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAA
Found at i:9009233 original size:45 final size:45
Alignment explanation
Indices: 9009086--9009797 Score: 341
Period size: 44 Copynumber: 15.8 Consensus size: 45
9009076 ATATGGCGAA
* * ** *
9009086 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAACAAG
* * * * * *
9009130 TCCTATCTCCCTGAAGTTGCAATGGAGCGGATTAAAG-TTACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAACAAG
* * * *
9009174 TTTTATCTCCCTGAAGTTACGGTGGAGCAGACTGAAGAAAACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAACAAG
* ** *
9009219 TCTTATC-CCTCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAA
1 TCTTATCTCC-CTGAAGTTGCAGTGGAGCAGACTGAAGATAACAAG
* * * **
9009264 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCCAACAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAACAAG
* * * * *
9009308 TCCTATCTCCCTGAGGTTGCAGTGGAGCGGATTGAAG-TTACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAACAAG
*
9009352 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAAC-AAG
* * * * *
9009397 TCTTATCTCCCTAAAGTTGCAATGGAACAGATTAAAGCTATAAATCACAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG--AT-AA-CA-AG
* ** * * * **
9009447 ATTTTATCTCTTTGAAGTTACAGTAGAGCAGA-T---CATGGC-AG
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAACAAG
* * * * * * *
9009488 ATCTTATCTCTCTGAAGGTGTAATGGAGCAGATTAAAACGAT--GAA-
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAA-GATAACAAG
* * ** * ** *
9009533 TCCTATACAT--CTGATGTTGCAGTAGGTCGGATTAAATCT-ACCATTACAAG
1 TCTTAT-C-TCCCTGAAGTTGC---A-GT-GGAGCAGA-CTGAAGATAACAAG
* * * * * *
9009583 TCTTATCTTCTTGAAGTTGTAGTGGAGTAGACTGAAGATATCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAACAAG
* ** *
9009628 CCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGAT-ACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAACAAG
* * * * * * *
9009672 TCTTATCCCCCTAAAGTTGCAGTGGGGCA-AATTAAAACT-GCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGA-TAACAAG
* * * * *
9009716 TCTTGTCTCCTTGAAGTTGCAGTGGAGTAGACTGAAGATATCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAACAAG
* * *
9009761 TCTCAT-TCCCCTGAAGTTGCAGTGGAACAGATTGAAG
1 TCTTATCT-CCCTGAAGTTGCAGTGGAGCAGACTGAAG
9009798 CTATAAATTA
Statistics
Matches: 500, Mismatches: 129, Indels: 77
0.71 0.18 0.11
Matches are distributed among these distances:
41 27 0.05
42 1 0.00
43 12 0.02
44 202 0.40
45 190 0.38
46 8 0.02
47 8 0.02
48 5 0.01
49 10 0.02
50 14 0.03
51 23 0.05
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.28
Consensus pattern (45 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAACAAG
Found at i:9009403 original size:178 final size:178
Alignment explanation
Indices: 9009078--9009417 Score: 540
Period size: 178 Copynumber: 1.9 Consensus size: 178
9009068 ATTGAAGAAT
* * *
9009078 ATGGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTG
1 ATGGCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCCAACAATCCTATCTCCCTG
* *
9009143 AAGTTGCAATGGAGCGGATTAAAGTTACAAGTTTTATCTCCCTGAAGTTACGGTGGAGCAGACTG
66 AAGTTGCAATGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTG
*
9009208 AAGAAAACAAGTCTTATC-CCTCTGAAGTTGCAGTGGGGCAGACTGAAG
131 AAGAAAACAAGTCTTATCTCC-CTAAAGTTGCAGTGGGGCAGACTGAAG
9009256 ATGGCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCCAACAATCCTATCTCCCTG
1 ATGGCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCCAACAATCCTATCTCCCTG
* * * *
9009321 AGGTTGCAGTGGAGCGGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTG
66 AAGTTGCAATGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTG
* *
9009386 AAGATAGCGAA-TCTTATCTCCCTAAAGTTGCA
131 AAGAAAAC-AAGTCTTATCTCCCTAAAGTTGCA
9009418 ATGGAACAGA
Statistics
Matches: 148, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
178 144 0.97
179 4 0.03
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (178 bp):
ATGGCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCCAACAATCCTATCTCCCTG
AAGTTGCAATGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTG
AAGAAAACAAGTCTTATCTCCCTAAAGTTGCAGTGGGGCAGACTGAAG
Found at i:9009408 original size:133 final size:135
Alignment explanation
Indices: 9009086--9009434 Score: 431
Period size: 133 Copynumber: 2.6 Consensus size: 135
9009076 ATATGGCGAA
* * ** * *
9009086 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCA--ATAATCCTATCTCCCTGAAGTTG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCA-AATCTTATCTCCCTAAAGTTG
* ** ** *
9009149 CAATGGAGCGGATTAAAG-TTACAAGTTTTATCTCCCTGAAGTTACGGTGGAGCAGACTGAAGAA
65 CAATGGAGCAGATTAAAGCCAACAAGTCCTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGAA
9009213 AACAAG
130 AACAAG
* *
9009219 TCTTATC-CCTCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAATCTTATCTCCCTAAAGTTG
1 TCTTATCTCC-CTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATCTCCCTAAAGTTG
* * * * * *
9009283 CAGTGGAGCAGATTAAAGCCAACAA-TCCTATCTCCCTGAGGTTGCAGTGGAGCGGATTGAAG-T
65 CAATGGAGCAGATTAAAGCCAACAAGTCCTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGAA
*
9009346 TACAAG
130 AACAAG
*
9009352 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATCTCCCTAAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATCTCCCTAAAGTTGC
*
9009417 AATGGAACAGATTAAAGC
66 AATGGAGCAGATTAAAGC
9009435 TATAAATCAC
Statistics
Matches: 185, Mismatches: 26, Indels: 10
0.84 0.12 0.05
Matches are distributed among these distances:
132 2 0.01
133 111 0.60
134 67 0.36
135 5 0.03
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (135 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATCTCCCTAAAGTTGC
AATGGAGCAGATTAAAGCCAACAAGTCCTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGAAA
ACAAG
Found at i:9021185 original size:11 final size:11
Alignment explanation
Indices: 9021124--9021207 Score: 50
Period size: 10 Copynumber: 7.5 Consensus size: 11
9021114 TATTTAAAAC
*
9021124 TATTTTATATGT
1 TATTTTAT-TAT
9021136 TATTTT-TATAT
1 TATTTTAT-TAT
9021147 TATTTATATTATT
1 TATTT-TATTA-T
*
9021160 TATTTTA-AAT
1 TATTTTATTAT
*
9021170 TATTTTATTGT
1 TATTTTATTAT
*
9021181 TA-TTTATTTT
1 TATTTTATTAT
*
9021191 TAGTTTTTTTA-
1 TA-TTTTATTAT
9021202 TATTTT
1 TATTTT
9021208 GTTTACTTGA
Statistics
Matches: 59, Mismatches: 7, Indels: 14
0.74 0.09 0.17
Matches are distributed among these distances:
10 21 0.36
11 15 0.25
12 16 0.27
13 7 0.12
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.71
Consensus pattern (11 bp):
TATTTTATTAT
Found at i:9021202 original size:25 final size:25
Alignment explanation
Indices: 9021114--9021190 Score: 74
Period size: 23 Copynumber: 3.2 Consensus size: 25
9021104 NNNNNATATA
* *
9021114 TATTTAAAACTATTTTATATGTTA--
1 TATTTTAAATTATTTTAT-TGTTATT
* *
9021138 T-TTTTATATTA-TTTA-TATTATT
1 TATTTTAAATTATTTTATTGTTATT
9021160 TATTTTAAATTATTTTATTGTTATT
1 TATTTTAAATTATTTTATTGTTATT
9021185 TATTTT
1 TATTTT
9021191 TAGTTTTTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 9
0.74 0.11 0.16
Matches are distributed among these distances:
20 4 0.10
22 5 0.12
23 16 0.38
24 5 0.12
25 12 0.29
ACGTcount: A:0.30, C:0.01, G:0.03, T:0.66
Consensus pattern (25 bp):
TATTTTAAATTATTTTATTGTTATT
Found at i:9023616 original size:22 final size:22
Alignment explanation
Indices: 9023581--9023634 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 22
9023571 GACCCTTTAC
** *
9023581 AAGCACGTGCTCCACTCCTCAA
1 AAGCACGTTTTCCACTCCTAAA
*
9023603 AAGCACGTTTTCCATTCCTAAA
1 AAGCACGTTTTCCACTCCTAAA
*
9023625 AAACACGTTT
1 AAGCACGTTT
9023635 ACATGACTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.31, C:0.31, G:0.11, T:0.26
Consensus pattern (22 bp):
AAGCACGTTTTCCACTCCTAAA
Found at i:9026991 original size:18 final size:18
Alignment explanation
Indices: 9026968--9027002 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
9026958 TTTTAAAGGC
*
9026968 TTGAAAGTTTGAAAATAT
1 TTGAAAATTTGAAAATAT
*
9026986 TTGAAAATTTTAAAATA
1 TTGAAAATTTGAAAATA
9027003 AATGTTAATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.40
Consensus pattern (18 bp):
TTGAAAATTTGAAAATAT
Found at i:9028466 original size:26 final size:26
Alignment explanation
Indices: 9028430--9028504 Score: 150
Period size: 26 Copynumber: 2.9 Consensus size: 26
9028420 ATCCTAGCCT
9028430 GTAAGGAGTGGCTCTTGTCTCGCCAC
1 GTAAGGAGTGGCTCTTGTCTCGCCAC
9028456 GTAAGGAGTGGCTCTTGTCTCGCCAC
1 GTAAGGAGTGGCTCTTGTCTCGCCAC
9028482 GTAAGGAGTGGCTCTTGTCTCGC
1 GTAAGGAGTGGCTCTTGTCTCGC
9028505 TGAGTGCTAC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.15, C:0.25, G:0.32, T:0.28
Consensus pattern (26 bp):
GTAAGGAGTGGCTCTTGTCTCGCCAC
Found at i:9028981 original size:29 final size:30
Alignment explanation
Indices: 9028938--9029001 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
9028928 AAATTGGGAC
*
9028938 TTTAGTCCTTATACTTTT-A-TTTTTAGAAA
1 TTTAGTCCTTATACTTTTCAGATTTTA-AAA
9028967 TTTAGTTCCTT-TACTTTTCAGATTTTAAAA
1 TTTAG-TCCTTATACTTTTCAGATTTTAAAA
9028997 TTTAG
1 TTTAG
9029002 ATCCAACTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
29 12 0.39
30 14 0.45
31 5 0.16
ACGTcount: A:0.27, C:0.11, G:0.08, T:0.55
Consensus pattern (30 bp):
TTTAGTCCTTATACTTTTCAGATTTTAAAA
Found at i:9030121 original size:21 final size:21
Alignment explanation
Indices: 9030087--9030129 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
9030077 TGTTACATAA
9030087 ATTTAATTTAAAAAT-TAAAT
1 ATTTAATTTAAAAATATAAAT
*
9030107 ATTTACATTTGAAAATATAAAT
1 ATTTA-ATTTAAAAATATAAAT
9030129 A
1 A
9030130 AAATTATTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 5 0.25
21 9 0.45
22 6 0.30
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (21 bp):
ATTTAATTTAAAAATATAAAT
Found at i:9034933 original size:20 final size:20
Alignment explanation
Indices: 9034897--9034934 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
9034887 AAATTATAAG
*
9034897 TAATTTTATTTAAGTTTAAA
1 TAATTTTATTAAAGTTTAAA
9034917 TAATTTT-TTAAATGTTTA
1 TAATTTTATTAAA-GTTTA
9034935 TTAGAAAACC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (20 bp):
TAATTTTATTAAAGTTTAAA
Found at i:9039266 original size:12 final size:12
Alignment explanation
Indices: 9039249--9039330 Score: 62
Period size: 12 Copynumber: 7.0 Consensus size: 12
9039239 TAACCATTTA
9039249 ATTATTTTTATT
1 ATTATTTTTATT
**
9039261 ATTATTGCTATT
1 ATTATTTTTATT
*
9039273 ATTATTTTTATC
1 ATTATTTTTATT
*
9039285 ACTA--TTTATT
1 ATTATTTTTATT
* *
9039295 ATTGTTCTTATT
1 ATTATTTTTATT
*
9039307 ATTATATTTGATT
1 ATTAT-TTTTATT
*
9039320 A-TATTTCTATT
1 ATTATTTTTATT
9039331 TACCTATATG
Statistics
Matches: 52, Mismatches: 15, Indels: 7
0.70 0.20 0.09
Matches are distributed among these distances:
10 7 0.13
11 5 0.10
12 34 0.65
13 6 0.12
ACGTcount: A:0.26, C:0.06, G:0.04, T:0.65
Consensus pattern (12 bp):
ATTATTTTTATT
Found at i:9039325 original size:34 final size:34
Alignment explanation
Indices: 9039244--9039325 Score: 87
Period size: 34 Copynumber: 2.4 Consensus size: 34
9039234 TTTTTTAACC
*
9039244 ATTTAATTATTTTTATTATTATTGCTATTATTAT
1 ATTTAATTATATTTATTATTATTGCTATTATTAT
* * *
9039278 -TTTTATCACTATTTATTATTGTT-CTTATTATTAT
1 ATTTAATTA-TATTTATTATTATTGC-TATTATTAT
*
9039312 ATTTGATTATATTT
1 ATTTAATTATATTT
9039326 CTATTTACCT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
33 7 0.18
34 26 0.67
35 6 0.15
ACGTcount: A:0.27, C:0.05, G:0.04, T:0.65
Consensus pattern (34 bp):
ATTTAATTATATTTATTATTATTGCTATTATTAT
Found at i:9046277 original size:25 final size:24
Alignment explanation
Indices: 9046232--9046315 Score: 89
Period size: 25 Copynumber: 3.4 Consensus size: 24
9046222 TCCGACCCAC
*
9046232 AGAGCATACCGATTTATAGCTCGTG
1 AGAGCATACCGA-TTACAGCTCGTG
* *
9046257 AGAGCATACTGATCTACAGCTCGAG
1 AGAGCATACCGAT-TACAGCTCGTG
*
9046282 TGAGCATACCGATTCACAGCTCGT-
1 AGAGCATACCGATT-ACAGCTCGTG
9046306 ATGAGCATAC
1 A-GAGCATAC
9046316 ATGTACATGA
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
24 2 0.04
25 47 0.96
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.24
Consensus pattern (24 bp):
AGAGCATACCGATTACAGCTCGTG
Found at i:9056038 original size:78 final size:78
Alignment explanation
Indices: 9055909--9056054 Score: 256
Period size: 78 Copynumber: 1.9 Consensus size: 78
9055899 TCCTCCTAAG
*
9055909 CTTCCCAAGAGCCTTGTTATCCATATTGATGTTCTTTCCATACTTTTTCTTAATTAATTTAATGA
1 CTTCCCAAGAGCCTTGTTATCCATATTGATGTCCTTTCCATACTTTTTCTTAATTAATTTAATGA
9055974 AGTGCTCTAAAAC
66 AGTGCTCTAAAAC
* **
9055987 CTTCCCAAGAGTCTTGTTATCCATATTGATGTCCTTTCCATGTTTTTTCTTAATTAATTTAATGA
1 CTTCCCAAGAGCCTTGTTATCCATATTGATGTCCTTTCCATACTTTTTCTTAATTAATTTAATGA
9056052 AGT
66 AGT
9056055 CAAACTCTCT
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
78 64 1.00
ACGTcount: A:0.25, C:0.19, G:0.11, T:0.45
Consensus pattern (78 bp):
CTTCCCAAGAGCCTTGTTATCCATATTGATGTCCTTTCCATACTTTTTCTTAATTAATTTAATGA
AGTGCTCTAAAAC
Found at i:9057677 original size:30 final size:31
Alignment explanation
Indices: 9057641--9057700 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
9057631 AAACCATTTA
*
9057641 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
* *
9057671 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCA
9057701 TCCCACCTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.20, C:0.40, G:0.00, T:0.40
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:9058217 original size:5 final size:5
Alignment explanation
Indices: 9058207--9058232 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
9058197 CTCGAAAATT
9058207 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
9058233 CGAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:9063823 original size:14 final size:14
Alignment explanation
Indices: 9063804--9063834 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
9063794 ATTGAGGAAT
9063804 TGTGTATTGAAGAG
1 TGTGTATTGAAGAG
9063818 TGTGTATTGAAGAG
1 TGTGTATTGAAGAG
9063832 TGT
1 TGT
9063835 TATCTCCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.26, C:0.00, G:0.35, T:0.39
Consensus pattern (14 bp):
TGTGTATTGAAGAG
Found at i:9066031 original size:20 final size:19
Alignment explanation
Indices: 9066008--9066050 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
9065998 TTAGGATTTT
*
9066008 TTTTGCAGTTTTTAATGAAA
1 TTTTACAGTTTTTAA-GAAA
* *
9066028 TTTTATATTTTTTAAGAAA
1 TTTTACAGTTTTTAAGAAA
9066047 TTTT
1 TTTT
9066051 TACATTAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.30, C:0.02, G:0.09, T:0.58
Consensus pattern (19 bp):
TTTTACAGTTTTTAAGAAA
Found at i:9066081 original size:16 final size:17
Alignment explanation
Indices: 9066055--9066089 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
9066045 AATTTTTACA
*
9066055 TTAATTTTTTTACTAAT
1 TTAATTTTTTTAATAAT
9066072 TTAA-TTTTTTAATAAT
1 TTAATTTTTTTAATAAT
9066088 TT
1 TT
9066090 CATAATAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (17 bp):
TTAATTTTTTTAATAAT
Found at i:9066127 original size:18 final size:17
Alignment explanation
Indices: 9066099--9066145 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 17
9066089 TCATAATAGA
9066099 TTATGAATTTTTT-AGTTT
1 TTAT-AATTTTTTAAG-TT
9066117 TTATAATTTTTTAAGTT
1 TTATAATTTTTTAAGTT
*
9066134 TTATGATTTTTT
1 TTATAATTTTTT
9066146 GAAGGATTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 21 0.78
18 6 0.22
ACGTcount: A:0.23, C:0.00, G:0.09, T:0.68
Consensus pattern (17 bp):
TTATAATTTTTTAAGTT
Found at i:9066222 original size:18 final size:17
Alignment explanation
Indices: 9066170--9066222 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 17
9066160 TTTAATGATT
*
9066170 TTTTTAAAACTTTTAATG
1 TTTTTAAAA-TTTTAATA
**
9066188 TTTTTAATTTTTCTAATA
1 TTTTTAAAATTT-TAATA
9066206 TTTTTAAAATTTATAAT
1 TTTTTAAAATTT-TAAT
9066223 TTCTTTTTTA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
17 3 0.11
18 25 0.89
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.60
Consensus pattern (17 bp):
TTTTTAAAATTTTAATA
Found at i:9066445 original size:18 final size:17
Alignment explanation
Indices: 9066394--9066445 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
9066384 ATAGTTGATT
* *
9066394 TTTTTAAACTTTTAATG
1 TTTTTAAAATTTTAATA
**
9066411 TTTTTAATTTTTCTAATA
1 TTTTTAAAATTT-TAATA
9066429 TTTTTAAAATTTATAAT
1 TTTTTAAAATTT-TAAT
9066446 TTCTTTTTTA
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
17 10 0.36
18 18 0.64
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.62
Consensus pattern (17 bp):
TTTTTAAAATTTTAATA
Found at i:9066564 original size:223 final size:224
Alignment explanation
Indices: 9066165--9066611 Score: 887
Period size: 223 Copynumber: 2.0 Consensus size: 224
9066155 GGATTTTTAA
9066165 TGATTTTTTTAAAACTTTTAATGTTTTTAATTTTTCTAATATTTTTAAAATTTATAATTTCTTTT
1 TGATTTTTTTAAAACTTTTAATGTTTTTAATTTTTCTAATATTTTTAAAATTTATAATTTCTTTT
9066230 TTACTTTCGTTTGACACATGGCAATATGTCATTAGTTAAGCTAACCTTTTTTTTAATGAAAAATA
66 TTACTTTCGTTTGACACATGGCAATATGTCATTAGTTAAGCTAACCTTTTTTTTAATGAAAAATA
9066295 TAGGTGTTGTAACATGGATTACAGAATGAAACTACATGGGACAAATTGATAAAAAAAAATAGTAC
131 TAGGTGTTGTAACATGGATTACAGAATGAAACTACATGGGACAAATTGATAAAAAAAAATAGTAC
9066360 AAGTGCAGAAATGATAGTTTAACTATAGT
196 AAGTGCAGAAATGATAGTTTAACTATAGT
9066389 TGATTTTTTT-AAACTTTTAATGTTTTTAATTTTTCTAATATTTTTAAAATTTATAATTTCTTTT
1 TGATTTTTTTAAAACTTTTAATGTTTTTAATTTTTCTAATATTTTTAAAATTTATAATTTCTTTT
9066453 TTACTTTCGTTTGACACATGGCAATATGTCATTAGTTAAGCTAACCTTTTTTTTAATGAAAAATA
66 TTACTTTCGTTTGACACATGGCAATATGTCATTAGTTAAGCTAACCTTTTTTTTAATGAAAAATA
9066518 TAGGTGTTGTAACATGGATTACAGAATGAAACTACATGGGACAAATTGATAAAAAAAAATAGTAC
131 TAGGTGTTGTAACATGGATTACAGAATGAAACTACATGGGACAAATTGATAAAAAAAAATAGTAC
9066583 AAGTGCAGAAATGATAGTTTAACTATAGT
196 AAGTGCAGAAATGATAGTTTAACTATAGT
9066612 ACAAGAGCCA
Statistics
Matches: 223, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
223 213 0.96
224 10 0.04
ACGTcount: A:0.36, C:0.09, G:0.13, T:0.42
Consensus pattern (224 bp):
TGATTTTTTTAAAACTTTTAATGTTTTTAATTTTTCTAATATTTTTAAAATTTATAATTTCTTTT
TTACTTTCGTTTGACACATGGCAATATGTCATTAGTTAAGCTAACCTTTTTTTTAATGAAAAATA
TAGGTGTTGTAACATGGATTACAGAATGAAACTACATGGGACAAATTGATAAAAAAAAATAGTAC
AAGTGCAGAAATGATAGTTTAACTATAGT
Found at i:9067747 original size:247 final size:247
Alignment explanation
Indices: 9067302--9067792 Score: 777
Period size: 247 Copynumber: 2.0 Consensus size: 247
9067292 AATGGCTGAC
* * *
9067302 CTCTCATCAATGTCAAGTAAGTGGTTTTGATTGTTCAAGCTTGTAAGATCTTAGGCTCTCAAGTG
1 CTCTCACCAATGTCAAGTAAGTGGTTTTGATCGTTCAAGCTTGTAAGATCTCAGGCTCTCAAGTG
* * * * *
9067367 TCTTAGCTCATAGCGTGATCTTGGTCAAAAAAGCTAACTAGCAAGGCATGAGCTCGCAAGGTGGC
66 TCTTAGCTCACAACGTAATCTTGGTCAAAAAAGCTAACCAACAAGGCATGAGCTCGCAAGGTGGC
* * * *
9067432 TCACAATTGTAACAACTCAATTTTTAGTAGTACCGAAAAAGGATATTTTTGAACCTTATTTCTGT
131 TCACAATTGTAACAACTCAATTTTTAGTAGTACCCAAAAAGGAGATTTTGGAACCTCATTTCTGT
*
9067497 AACCGAGTCCGTAAATATTAAATATGAATATTTAC-GAGGTTAATATAAAGAT
196 AACCGAGTCCATAAATATTAAATATGAATATTTACAG-GGTTAATATAAAGAT
* *
9067549 CTCTCACCTATGTCAAGTAAGTGGTTTTGATCGTTCAAGCTTGTAAGATCTCGGGCTCTCAAGTG
1 CTCTCACCAATGTCAAGTAAGTGGTTTTGATCGTTCAAGCTTGTAAGATCTCAGGCTCTCAAGTG
* *
9067614 TCTTAGCTCACAACGTAATCTTGGTCAAAAGAGCTAACCAACAAGGTATGAGCTCGCAAGGTGGC
66 TCTTAGCTCACAACGTAATCTTGGTCAAAAAAGCTAACCAACAAGGCATGAGCTCGCAAGGTGGC
* * * *
9067679 TCACAATTGTAACAGCTCGATTTTTAGTAGTACCCAAAAAGGCGATTTTGGAACCTCATTTTTGT
131 TCACAATTGTAACAACTCAATTTTTAGTAGTACCCAAAAAGGAGATTTTGGAACCTCATTTCTGT
9067744 AACCGAGTCCATAAATATTAAATATGAATATTTACAGGGTTAATATAAA
196 AACCGAGTCCATAAATATTAAATATGAATATTTACAGGGTTAATATAAA
9067793 TGTATATAGA
Statistics
Matches: 222, Mismatches: 21, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
247 221 1.00
248 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (247 bp):
CTCTCACCAATGTCAAGTAAGTGGTTTTGATCGTTCAAGCTTGTAAGATCTCAGGCTCTCAAGTG
TCTTAGCTCACAACGTAATCTTGGTCAAAAAAGCTAACCAACAAGGCATGAGCTCGCAAGGTGGC
TCACAATTGTAACAACTCAATTTTTAGTAGTACCCAAAAAGGAGATTTTGGAACCTCATTTCTGT
AACCGAGTCCATAAATATTAAATATGAATATTTACAGGGTTAATATAAAGAT
Found at i:9076480 original size:7 final size:7
Alignment explanation
Indices: 9076468--9076499 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
9076458 CAATAAATAT
9076468 AAATAGG
1 AAATAGG
9076475 AAATAGG
1 AAATAGG
9076482 AAATAGG
1 AAATAGG
*
9076489 AAATAGT
1 AAATAGG
9076496 AAAT
1 AAAT
9076500 GGATAGTACA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.59, C:0.00, G:0.22, T:0.19
Consensus pattern (7 bp):
AAATAGG
Found at i:9078553 original size:63 final size:63
Alignment explanation
Indices: 9078486--9078691 Score: 148
Period size: 63 Copynumber: 3.1 Consensus size: 63
9078476 AAATCTTGCT
9078486 AATTTACGATCAAGGCTTCAGTTAATTGATTTACGATCATAAAAACTTCATTAAGAGTTCGCC
1 AATTTACGATCAAGGCTTCAGTTAATTGATTTACGATCATAAAAACTTCATTAAGAGTTCGCC
* * * * * * *
9078549 AATTTACGATCGCAA--CTCCACTTAAATAATTCACTGATTTACTACCACAACTATCATTTTCAA
1 AATTTACGAT--CAAGGCTTCAGTTAATTGATTTAC-GA-TCA-TA--AAAACT-TCA--TT-AA
* *
9078612 -AGCTCGCT
55 GAGTTCGCC
* * ** * * *
9078620 AATTTACAATCACGGCTTCAGTTCTTTGATTTACGATCATAAACACTTTATTAAGAGTTCACC
1 AATTTACGATCAAGGCTTCAGTTAATTGATTTACGATCATAAAAACTTCATTAAGAGTTCGCC
9078683 AATTTACGA
1 AATTTACGA
9078692 GCACAACTCC
Statistics
Matches: 103, Mismatches: 26, Indels: 28
0.66 0.17 0.18
Matches are distributed among these distances:
62 2 0.02
63 39 0.38
64 2 0.02
65 7 0.07
66 6 0.06
68 7 0.07
69 7 0.07
70 2 0.02
71 29 0.28
72 2 0.02
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (63 bp):
AATTTACGATCAAGGCTTCAGTTAATTGATTTACGATCATAAAAACTTCATTAAGAGTTCGCC
Found at i:9078554 original size:134 final size:134
Alignment explanation
Indices: 9078306--9078802 Score: 557
Period size: 134 Copynumber: 3.7 Consensus size: 134
9078296 TACAAATCTC
* * ** * *
9078306 ACAGTTCGCTGATTTACGATCACAATTGTCATTTTTTAAGCTCGCCGATTTACGAACACGGCTTA
1 ACAGTTCGCTGATTTACGATCACAACTGTCATTTTTAAAGCTCGCTAATTTACGATCACGGCTTC
* * * * *
9078371 AGTTCATTGATTTACGATCATAAACAGTACATTAAGAGTTTGTCGATTTACGGTCGCAACTCCAC
66 AGTTCATTGATTTACGATCATAAACACTTCATTAAGAGTTCGCCAATTTACGGTCGCAACTCCAC
9078436 TTAA
131 TTAA
* * * * *
9078440 ACAGGTCGCTGATTTACGATCACAATTGTCATTTTTAAATCTTGCTAATTTACGATCAAGGCTTC
1 ACAGTTCGCTGATTTACGATCACAACTGTCATTTTTAAAGCTCGCTAATTTACGATCACGGCTTC
* * *
9078505 AGTTAATTGATTTACGATCATAAAAACTTCATTAAGAGTTCGCCAATTTACGATCGCAACTCCAC
66 AGTTCATTGATTTACGATCATAAACACTTCATTAAGAGTTCGCCAATTTACGGTCGCAACTCCAC
9078570 TTAA
131 TTAA
* * * * * * * *
9078574 ATAATTCACTGATTTACTACCACAACTATCATTTTCAAAGCTCGCTAATTTACAATCACGGCTTC
1 ACAGTTCGCTGATTTACGATCACAACTGTCATTTTTAAAGCTCGCTAATTTACGATCACGGCTTC
* * * *
9078639 AGTTCTTTGATTTACGATCATAAACACTTTATTAAGAGTTCACCAATTTACGAG-CACAACTCCG
66 AGTTCATTGATTTACGATCATAAACACTTCATTAAGAGTTCGCCAATTTACG-GTCGCAACTCC-
*
9078703 A-TTAG
129 ACTTAA
* * * * * * * * * *
9078708 ACAGTTCGTTGATTTACGATCACAACTGTCATTTGTAAAACTTGTTGATTTCCAATCACGACTTT
1 ACAGTTCGCTGATTTACGATCACAACTGTCATTTTTAAAGCTCGCTAATTTACGATCACGGCTTC
* * *
9078773 AGTTCATTGATTTATGATCTTGAACACTTC
66 AGTTCATTGATTTACGATCATAAACACTTC
9078803 TTAGTTCATA
Statistics
Matches: 302, Mismatches: 59, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
134 301 1.00
135 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.35
Consensus pattern (134 bp):
ACAGTTCGCTGATTTACGATCACAACTGTCATTTTTAAAGCTCGCTAATTTACGATCACGGCTTC
AGTTCATTGATTTACGATCATAAACACTTCATTAAGAGTTCGCCAATTTACGGTCGCAACTCCAC
TTAA
Found at i:9079980 original size:134 final size:134
Alignment explanation
Indices: 9079699--9079998 Score: 331
Period size: 134 Copynumber: 2.2 Consensus size: 134
9079689 TAATCAAAGA
* * * *
9079699 TTCAGTTCATTGATTTACAATCATGAAAACTTTATTATGAGTTCACTGATTTACGATCACAACTC
1 TTCAGTTCATTGATTTACGATCATGAAAACTTTATTAAGAGTTCACTGATTTACAATCACAACGC
* * *
9079764 CACTTAAACACTTCGCTGATTTACGATCACAACTTTCATTTTCAAAGCTCGATAATTTACAATAA
66 CACTTAAACAATTCACTGATTTACAATCACAACTTTCATTTTCAAAGCTCGATAATTTACAATAA
*
9079829 CGGC
131 CGAC
* * * * *
9079833 TTCAATTCTTTGATTTACGATCATGAATACTTTATTAAGAGTTC-GTCGATTTACAATCGCAACG
1 TTCAGTTCATTGATTTACGATCATGAAAACTTTATTAAGAGTTCACT-GATTTACAATCACAACG
* * *
9079897 CCGA-TTAAACAATTCACTGATTTACAATCACAA-TTGTCATCTTT-AAAGCT-TACTGATTTCC
65 CC-ACTTAAACAATTCACTGATTTACAATCACAACTT-TCAT-TTTCAAAGCTCGA-TAATTTAC
* *
9079958 AATCATGAC
126 AATAACGAC
* * *
9079967 TTTAGTTCATTGATTTACGATCTTGAACACTT
1 TTCAGTTCATTGATTTACGATCATGAAAACTT
9079999 CTCGTTTCAC
Statistics
Matches: 138, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
133 4 0.03
134 130 0.94
135 4 0.03
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.37
Consensus pattern (134 bp):
TTCAGTTCATTGATTTACGATCATGAAAACTTTATTAAGAGTTCACTGATTTACAATCACAACGC
CACTTAAACAATTCACTGATTTACAATCACAACTTTCATTTTCAAAGCTCGATAATTTACAATAA
CGAC
Found at i:9080942 original size:19 final size:18
Alignment explanation
Indices: 9080918--9080970 Score: 65
Period size: 18 Copynumber: 2.9 Consensus size: 18
9080908 GTGTTTTAAT
9080918 ATAATTTTTAATATTTTTA
1 ATAATTTTT-ATATTTTTA
*
9080937 ATAATTTATATATTTTTA
1 ATAATTTTTATATTTTTA
9080955 A-AGATTTTT-TATTTTT
1 ATA-ATTTTTATATTTTT
9080971 TAGAATTACT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 8 0.26
18 15 0.48
19 8 0.26
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (18 bp):
ATAATTTTTATATTTTTA
Found at i:9085103 original size:16 final size:16
Alignment explanation
Indices: 9085082--9085115 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
9085072 CTCTAAAAAA
* *
9085082 TTTTAAAATATTATTT
1 TTTTAAAAAATCATTT
9085098 TTTTAAAAAATCATTT
1 TTTTAAAAAATCATTT
9085114 TT
1 TT
9085116 AACCATTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (16 bp):
TTTTAAAAAATCATTT
Found at i:9086568 original size:25 final size:26
Alignment explanation
Indices: 9086523--9086582 Score: 72
Period size: 25 Copynumber: 2.3 Consensus size: 26
9086513 ACACCCATTC
9086523 CATATGCATAACACACAAGTCATAAG
1 CATATGCATAACACACAAGTCATAAG
*
9086549 CATAT-CATACCAC-CATAGTCATAAG
1 CATATGCATAACACACA-AGTCATAAG
9086574 C-TAGTGCAT
1 CATA-TGCAT
9086583 GCAAACATAG
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
24 4 0.13
25 18 0.60
26 8 0.27
ACGTcount: A:0.40, C:0.25, G:0.12, T:0.23
Consensus pattern (26 bp):
CATATGCATAACACACAAGTCATAAG
Found at i:9089771 original size:2 final size:2
Alignment explanation
Indices: 9089764--9089797 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
9089754 CAACATATTG
*
9089764 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9089798 CATAATACAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:9089949 original size:21 final size:21
Alignment explanation
Indices: 9089920--9090154 Score: 161
Period size: 21 Copynumber: 11.2 Consensus size: 21
9089910 AAAGCTCGAA
*
9089920 AGCTGAACAGAAGCTCATGAG
1 AGCTGAACAGAAGCTCATAAG
* *
9089941 AGCTAAACAGAAAC-CTATAA-
1 AGCTGAACAGAAGCTC-ATAAG
* * *
9089961 AGGTTGAACAGAAGCTCTTAAA
1 A-GCTGAACAGAAGCTCATAAG
* * *
9089983 AGCTTAAC-GAAAACCCATAAG
1 AGCTGAACAG-AAGCTCATAAG
* * *
9090004 GGCTAAACAGAAGCTCAAAAG
1 AGCTGAACAGAAGCTCATAAG
** * *
9090025 AGCTGAATGGAAACTCATATG
1 AGCTGAACAGAAGCTCATAAG
* *
9090046 AGTTAAACAGAAGCTCATAAG
1 AGCTGAACAGAAGCTCATAAG
* *
9090067 AGATGAACAGAAACTCATAAG
1 AGCTGAACAGAAGCTCATAAG
* *
9090088 AGTTGAACAGAAGCTCAAAAG
1 AGCTGAACAGAAGCTCATAAG
** * *
9090109 AGCTGAATGGAAACTCATATG
1 AGCTGAACAGAAGCTCATAAG
* * *
9090130 AGTTAAACAGAAGCTCGTAAG
1 AGCTGAACAGAAGCTCATAAG
9090151 AGCT
1 AGCT
9090155 AAACGGAAAG
Statistics
Matches: 157, Mismatches: 51, Indels: 12
0.71 0.23 0.05
Matches are distributed among these distances:
20 3 0.02
21 151 0.96
22 3 0.02
ACGTcount: A:0.45, C:0.17, G:0.21, T:0.17
Consensus pattern (21 bp):
AGCTGAACAGAAGCTCATAAG
Found at i:9090086 original size:84 final size:84
Alignment explanation
Indices: 9089967--9090152 Score: 275
Period size: 84 Copynumber: 2.2 Consensus size: 84
9089957 ATAAAGGTTG
* * * * *
9089967 AACAGAAGCTCTTAAAAGCTTAACGAAAACCCATAAGGGCTAAACAGAAGCTCAAAAGAGCTGAA
1 AACAGAAGCTCATAAGAGATGAACGAAAACCCATAAGAGCTAAACAGAAGCTCAAAAGAGCTGAA
9090032 TGGAAACTCATATGAGTTA
66 TGGAAACTCATATGAGTTA
* * *
9090051 AACAGAAGCTCATAAGAGATGAAC-AGAAACTCATAAGAGTTGAACAGAAGCTCAAAAGAGCTGA
1 AACAGAAGCTCATAAGAGATGAACGA-AAACCCATAAGAGCTAAACAGAAGCTCAAAAGAGCTGA
9090115 ATGGAAACTCATATGAGTTA
65 ATGGAAACTCATATGAGTTA
*
9090135 AACAGAAGCTCGTAAGAG
1 AACAGAAGCTCATAAGAG
9090153 CTAAACGGAA
Statistics
Matches: 92, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
83 1 0.01
84 91 0.99
ACGTcount: A:0.46, C:0.16, G:0.21, T:0.17
Consensus pattern (84 bp):
AACAGAAGCTCATAAGAGATGAACGAAAACCCATAAGAGCTAAACAGAAGCTCAAAAGAGCTGAA
TGGAAACTCATATGAGTTA
Found at i:9090122 original size:42 final size:42
Alignment explanation
Indices: 9089925--9090163 Score: 232
Period size: 42 Copynumber: 5.7 Consensus size: 42
9089915 TCGAAAGCTG
** * * *
9089925 AACAGAAGCTCATGAGAGCTAAACAGAAAC-CTATAA-AGGTTG
1 AACAGAAGCTCAAAAGAGCTGAACGGAAACTC-ATAAGA-GTTA
* * * * * *
9089967 AACAGAAGCTCTTAAA-AGCTTAACGAAAACCCATAAGGGCTA
1 AACAGAAGCTC-AAAAGAGCTGAACGGAAACTCATAAGAGTTA
* *
9090009 AACAGAAGCTCAAAAGAGCTGAATGGAAACTCATATGAGTTA
1 AACAGAAGCTCAAAAGAGCTGAACGGAAACTCATAAGAGTTA
* * * *
9090051 AACAGAAGCTCATAAGAGATGAACAGAAACTCATAAGAGTTG
1 AACAGAAGCTCAAAAGAGCTGAACGGAAACTCATAAGAGTTA
* *
9090093 AACAGAAGCTCAAAAGAGCTGAATGGAAACTCATATGAGTTA
1 AACAGAAGCTCAAAAGAGCTGAACGGAAACTCATAAGAGTTA
** *
9090135 AACAGAAGCTCGTAAGAGCTAAACGGAAA
1 AACAGAAGCTCAAAAGAGCTGAACGGAAA
9090164 GTAAAACACG
Statistics
Matches: 160, Mismatches: 33, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
41 3 0.02
42 155 0.97
43 2 0.01
ACGTcount: A:0.46, C:0.16, G:0.21, T:0.17
Consensus pattern (42 bp):
AACAGAAGCTCAAAAGAGCTGAACGGAAACTCATAAGAGTTA
Found at i:9093473 original size:2 final size:2
Alignment explanation
Indices: 9093466--9093493 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
9093456 GCTTATTATG
9093466 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9093494 GGTTTTATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9093875 original size:22 final size:21
Alignment explanation
Indices: 9093842--9093884 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
9093832 TAATTATCAT
*
9093842 TTTATCTAATAAATTATTTAAA
1 TTTATCTAAT-AATTAATTAAA
9093864 TTTAT-TATATAATTAATTAAA
1 TTTATCTA-ATAATTAATTAAA
9093885 ATATTTATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (21 bp):
TTTATCTAATAATTAATTAAA
Found at i:9107364 original size:16 final size:16
Alignment explanation
Indices: 9107343--9107394 Score: 54
Period size: 14 Copynumber: 3.3 Consensus size: 16
9107333 TTCATGTTTT
9107343 TGTTTTCAAATATGAA
1 TGTTTTCAAATATGAA
** *
9107359 TGTTTTTCATGTAT--T
1 TG-TTTTCAAATATGAA
9107374 TGTTTTCAAATATGAA
1 TGTTTTCAAATATGAA
9107390 TGTTT
1 TGTTT
9107395 GATGCTTTAT
Statistics
Matches: 27, Mismatches: 6, Indels: 6
0.69 0.15 0.15
Matches are distributed among these distances:
14 9 0.33
15 2 0.07
16 7 0.26
17 9 0.33
ACGTcount: A:0.27, C:0.06, G:0.13, T:0.54
Consensus pattern (16 bp):
TGTTTTCAAATATGAA
Found at i:9107365 original size:31 final size:31
Alignment explanation
Indices: 9107330--9107394 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
9107320 CAGTCAACAA
*
9107330 TTTTTCATGTTTTTGTTTTCAAATATGAATG
1 TTTTTCATGTATTTGTTTTCAAATATGAATG
9107361 TTTTTCATGTATTTGTTTTCAAATATGAATG
1 TTTTTCATGTATTTGTTTTCAAATATGAATG
9107392 TTT
1 TTT
9107395 GATGCTTTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.23, C:0.06, G:0.12, T:0.58
Consensus pattern (31 bp):
TTTTTCATGTATTTGTTTTCAAATATGAATG
Found at i:9109311 original size:28 final size:29
Alignment explanation
Indices: 9109280--9109347 Score: 93
Period size: 28 Copynumber: 2.4 Consensus size: 29
9109270 TATTTGTGCA
9109280 TTTTTATTATTATCATTATTTT-TTATTT
1 TTTTTATTATTATCATTATTTTGTTATTT
* * *
9109308 TTTTTATTATTCTCGTTGTTTTGTTATTT
1 TTTTTATTATTATCATTATTTTGTTATTT
*
9109337 CTTTTATTATT
1 TTTTTATTATT
9109348 TTTAATATCT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
28 19 0.54
29 16 0.46
ACGTcount: A:0.16, C:0.06, G:0.04, T:0.74
Consensus pattern (29 bp):
TTTTTATTATTATCATTATTTTGTTATTT
Found at i:9112477 original size:15 final size:15
Alignment explanation
Indices: 9112451--9112486 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
9112441 AATATAAAGA
9112451 ACATAT-AAATATGT
1 ACATATAAAATATGT
*
9112465 ATATATAAAATATGT
1 ACATATAAAATATGT
9112480 ACATATA
1 ACATATA
9112487 TACGTAGGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.36
Consensus pattern (15 bp):
ACATATAAAATATGT
Found at i:9116298 original size:175 final size:175
Alignment explanation
Indices: 9116007--9116636 Score: 679
Period size: 175 Copynumber: 3.6 Consensus size: 175
9115997 NNNNNNNNNN
*
9116007 AGAGAGATGAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTACTAGCT
1 AGAGAGATGAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAAGATTACTAGCT
*
9116072 CCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAA
66 CCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTATTCGGTCTACTCCACTGTAA
* *
9116137 CCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTC
131 CCTCAGGGAGATAAGACTTGATGCGATCTACTCCACTGTAACTTC
*
9116182 AGAGAGATGAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTACTAGCT
1 AGAGAGATGAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAAGATTACTAGCT
*
9116247 CCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTACTCCACTGTAA
66 CCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTATTCGGTCTACTCCACTGTAA
* * * *
9116312 CCTCAGGGAGATAAGACTTGCATATTCAACCTGCTCCACTGTAACTTC
131 CCTCAGGGAGATAAGACTTG---ATGCGATCTACTCCACTGTAACTTC
* * * ** ** * *
9116360 AGGGAGATAAGGT--TTGTGGCTTCGATCTGCTCCTCTGTAA-TCTCAGGGAGATAAGATCTGA-
1 AGAGAGATGAGATCCTT-T-ATTTTAATCCGCTCCACTGTAACT-TCAGGGAGATAAGAT-T-AC
* ** * ** * * *** * *
9116421 AATTTTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGA-CTTG-CA-TATTCAACCTGCCCC
61 TA-GCTCCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATC-TGAAATTATTCGGTCTACTCC
* ** *
9116483 ACTGTAACTTCAGGGAGATAAGGTTTGATGCGATCTACTCCGCTGTAACTTC
124 ACTGTAACCTCAGGGAGATAAGACTTGATGCGATCTACTCCACTGTAACTTC
* * *
9116535 AGAGAGAT-AGGATCCTTTATTTTAACCCGCTCCACTATAACTTCAGGGAGATAAGA-TAGT-G-
1 AGAGAGATGA-GATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAAGATTACTAGC
* * * *
9116596 TAATCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT
65 T--CCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT
9116637 CTGGCGTCAA
Statistics
Matches: 382, Mismatches: 55, Indels: 39
0.80 0.12 0.08
Matches are distributed among these distances:
170 1 0.00
172 33 0.09
173 2 0.01
174 1 0.00
175 205 0.54
176 4 0.01
177 4 0.01
178 93 0.24
179 4 0.01
180 35 0.09
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (175 bp):
AGAGAGATGAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAAGATTACTAGCT
CCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTATTCGGTCTACTCCACTGTAA
CCTCAGGGAGATAAGACTTGATGCGATCTACTCCACTGTAACTTC
Found at i:9116324 original size:90 final size:90
Alignment explanation
Indices: 9116036--9116370 Score: 371
Period size: 90 Copynumber: 3.8 Consensus size: 90
9116026 TTTTAATCCG
* *
9116036 CTCCACTGTAACTTCAGGGAGATAGGATTACTAGCTCCAATCTGCTCCACTGTAACCTCAGGGAG
1 CTCCACTGTAACCTCAGGGAGATAAGATTACTAGCTCCAATCTGCTCCACTGTAACCTCAGGGAG
*
9116101 ATAAGATCTGAAATTCTTCGGTCTA
66 ATAAGATCTGAAATTTTTCGGTCTA
* * * * * * * *
9116126 CTCCACTGTAACCTCAGGGAGATAAGA--CCT-GATGCGATCTACTCTACTGTAACTTCAGAGAG
1 CTCCACTGTAACCTCAGGGAGATAAGATTACTAGCTCCAATCTGCTCCACTGTAACCTCAGGGAG
* ** ** **
9116188 ATGAGATCCT-TTA-TTTT-AATCCG
66 ATAAGAT-CTGAAATTTTTCGGTCTA
* *
9116211 CTCCACTGTAACTTCAGGGAGATAGGATTACTAGCTCCAATCTGCTCCACTGTAACCTCAGGGAG
1 CTCCACTGTAACCTCAGGGAGATAAGATTACTAGCTCCAATCTGCTCCACTGTAACCTCAGGGAG
9116276 ATAAGATCTGAAATTTTTCGGTCTA
66 ATAAGATCTGAAATTTTTCGGTCTA
* * * *
9116301 CTCCACTGTAACCTCAGGGAGATAAGACTTGCATA--TTCAACCTGCTCCACTGTAACTTCAGGG
1 CTCCACTGTAACCTCAGGGAGATAAGA-TTAC-TAGCTCCAATCTGCTCCACTGTAACCTCAGGG
9116364 AGATAAG
64 AGATAAG
9116371 GTTTGTGGCT
Statistics
Matches: 195, Mismatches: 41, Indels: 18
0.77 0.16 0.07
Matches are distributed among these distances:
85 27 0.14
86 3 0.02
87 36 0.18
88 36 0.18
89 4 0.02
90 84 0.43
91 3 0.02
92 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (90 bp):
CTCCACTGTAACCTCAGGGAGATAAGATTACTAGCTCCAATCTGCTCCACTGTAACCTCAGGGAG
ATAAGATCTGAAATTTTTCGGTCTA
Found at i:9116361 original size:134 final size:132
Alignment explanation
Indices: 9116126--9116685 Score: 542
Period size: 134 Copynumber: 4.3 Consensus size: 132
9116116 CTTCGGTCTA
* * * * * *
9116126 CTCCACTGTAACCTCAGGGAGATAAGACCTG--A---TGCGATCTACTCTACTGTAACTTCAGAG
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTACTCCACTGTAACCTCAGGG
* * * *
9116186 AGATGAGATCCTT-TAT-TTTAATCC-GCTCCACTGTAACTTCAGGGAGAT-AGGATTACTAGCT
66 AGATAAGA--CTTGCATATTCAA-CCTGCTCCACTGTAACTTCAGGGAGATAAGG-TT-CTGGCT
9116247 CCAATCTG
126 -CAATCTG
9116255 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTACTCCACTGTAACCTCAGGG
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTACTCCACTGTAACCTCAGGG
* *
9116320 AGATAAGACTTGCATATTCAACCTGCTCCACTGTAACTTCAGGGAGATAAGGTTTGTGGCTTCGA
66 AGATAAGACTTGCATATTCAACCTGCTCCACTGTAACTTCAGGGAGATAAGG-TTCTGGC-TCAA
9116385 TCTG
129 TCTG
* *
9116389 CTCCTCTGTAATCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTACTCCACTGTAACCTCAGGG
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTACTCCACTGTAACCTCAGGG
* * *
9116454 AGATAAGACTTGCATATTCAACCTGCCCCACTGTAACTTCAGGGAGATAAGGTT-T-GATGCGAT
66 AGATAAGACTTGCATATTCAACCTGCTCCACTGTAACTTCAGGGAGATAAGGTTCTGGCT-CAAT
*
9116517 CTA
130 CTG
* * * * ** * ** * *
9116520 CTCCGCTGTAACTTCAGAGAGATAGGATCCT-TTATTTTAAC---CCGCTCCACTATAACTTCAG
1 CTCCACTGTAACCTCAGGGAGATAAGAT-CTGAAATTTT-TCGGTCTACTCCACTGTAACCTCAG
* ** * * * * *
9116581 GGAGATAAGA-TAGTGTAATCGATCTGCTCCGCTGTAA-TCTCAGGGAGATAAGATCTCTGGCGT
64 GGAGATAAGACTTGCATATTCAACCTGCTCCACTGTAACT-TCAGGGAGATAAGGT-TCTGGC-T
9116644 CAATCTG
126 CAATCTG
9116651 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT
9116686 ATTCACTGAT
Statistics
Matches: 364, Mismatches: 48, Indels: 36
0.81 0.11 0.08
Matches are distributed among these distances:
127 1 0.00
128 33 0.09
129 57 0.16
130 4 0.01
131 68 0.19
132 8 0.02
133 6 0.02
134 181 0.50
135 6 0.02
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29
Consensus pattern (132 bp):
CTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTACTCCACTGTAACCTCAGGG
AGATAAGACTTGCATATTCAACCTGCTCCACTGTAACTTCAGGGAGATAAGGTTCTGGCTCAATC
TG
Found at i:9116678 original size:44 final size:43
Alignment explanation
Indices: 9116030--9116680 Score: 354
Period size: 44 Copynumber: 14.8 Consensus size: 43
9116020 CCTTTATTTT
* * * *
9116030 AATCCGCTCCACTGTAACTTCAGGGAGATAGGAT-TACTAGCTCC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT-CT-GCTTC
* *
9116074 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT---CTGCTTC
** * * *
9116120 GGTCTACTCCACTGTAACCTCAGGGAGATAAGA-C-CTGATGC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCTTC
* * * * * * * ** *
9116161 GATCTACTCTACTGTAACTTCAGAGAGATGAGATCCTTTATTTT
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTCTGCTTC
* * * *
9116205 AATCCGCTCCACTGTAACTTCAGGGAGATAGGAT-TACTAGCTCC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT-CT-GCTTC
* **
9116249 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTTTTC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT---CTGCTTC
** *
9116295 GGTCTACTCCACTGTAACCTCAGGGAGATAAGA-CT-TGCATATTC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGC---TTC
* * * * *
9116339 AACCTGCTCCACTGTAACTTCAGGGAGATAAGGTTTGTGGCTTC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GCTTC
* * * * **
9116383 GATCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTGAAATTTTTC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT---CTGCTTC
** *
9116429 GGTCTACTCCACTGTAACCTCAGGGAGATAAGA-CT-TGCATATTC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGC---TTC
* * * * * *
9116473 AACCTGCCCCACTGTAACTTCAGGGAGATAAGGT-T-TGATGC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCTTC
* * * * * * * ** *
9116514 GATCTACTCCGCTGTAACTTCAGAGAGATAGGATCCTTTATTTT
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTCTGCTTC
* * * * **
9116558 AACCCGCTCCACTATAACTTCAGGGAGATAAGAT-AGTG-TAATC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCT--TC
* * * *
9116601 GATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCGTC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GCTTC
9116645 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT
9116681 GAAATATTCA
Statistics
Matches: 459, Mismatches: 116, Indels: 64
0.72 0.18 0.10
Matches are distributed among these distances:
41 62 0.14
42 2 0.00
43 31 0.07
44 250 0.54
45 9 0.02
46 98 0.21
47 7 0.02
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (43 bp):
AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGCTTC
Found at i:9117776 original size:7 final size:7
Alignment explanation
Indices: 9117764--9117823 Score: 81
Period size: 7 Copynumber: 9.0 Consensus size: 7
9117754 TTAGCCTCTC
9117764 CATTTTT
1 CATTTTT
9117771 CA-TTTT
1 CATTTTT
9117777 CATTTTT
1 CATTTTT
*
9117784 CA-TTCT
1 CATTTTT
9117790 CATTTTT
1 CATTTTT
9117797 CATTTTT
1 CATTTTT
*
9117804 CA-TTCT
1 CATTTTT
9117810 CATTTTT
1 CATTTTT
9117817 CATTTTT
1 CATTTTT
9117824 TTGACTCAGA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
6 16 0.35
7 30 0.65
ACGTcount: A:0.15, C:0.18, G:0.00, T:0.67
Consensus pattern (7 bp):
CATTTTT
Found at i:9117782 original size:13 final size:14
Alignment explanation
Indices: 9117764--9117823 Score: 81
Period size: 13 Copynumber: 4.5 Consensus size: 14
9117754 TTAGCCTCTC
9117764 CATTTTTCA-TTTT
1 CATTTTTCATTTTT
*
9117777 CATTTTTCA-TTCT
1 CATTTTTCATTTTT
9117790 CATTTTTCATTTTT
1 CATTTTTCATTTTT
*
9117804 CA-TTCTCATTTTT
1 CATTTTTCATTTTT
9117817 CATTTTT
1 CATTTTT
9117824 TTGACTCAGA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
13 33 0.80
14 8 0.20
ACGTcount: A:0.15, C:0.18, G:0.00, T:0.67
Consensus pattern (14 bp):
CATTTTTCATTTTT
Found at i:9117787 original size:20 final size:20
Alignment explanation
Indices: 9117773--9117823 Score: 102
Period size: 20 Copynumber: 2.5 Consensus size: 20
9117763 CCATTTTTCA
9117773 TTTTCATTTTTCATTCTCAT
1 TTTTCATTTTTCATTCTCAT
9117793 TTTTCATTTTTCATTCTCAT
1 TTTTCATTTTTCATTCTCAT
9117813 TTTTCATTTTT
1 TTTTCATTTTT
9117824 TTGACTCAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.14, C:0.18, G:0.00, T:0.69
Consensus pattern (20 bp):
TTTTCATTTTTCATTCTCAT
Found at i:9118786 original size:6 final size:6
Alignment explanation
Indices: 9118754--9118870 Score: 65
Period size: 6 Copynumber: 18.8 Consensus size: 6
9118744 TCTTTTTCTC
* * * * * * *
9118754 ATTTTC ATTTTC ATTTTG ATCTTG ATTTTG ATTTT- TTTCTTC TTTCTTC
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATT-TTG ATT-TTG
* * * * *
9118803 TTTTTG TTTTTT ATTTTG ATTTTTG ATTTTTG ATTTTTT ATTTTC ATTTTG
1 ATTTTG ATTTTG ATTTTG A-TTTTG A-TTTTG A-TTTTG ATTTTG ATTTTG
*
9118854 ACTTTG ATTTTG ATTTT
1 ATTTTG ATTTTG ATTTT
9118871 TTCTTTTTCT
Statistics
Matches: 95, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
5 2 0.02
6 64 0.67
7 29 0.31
ACGTcount: A:0.13, C:0.08, G:0.09, T:0.71
Consensus pattern (6 bp):
ATTTTG
Found at i:9118801 original size:25 final size:26
Alignment explanation
Indices: 9118773--9118864 Score: 75
Period size: 25 Copynumber: 3.6 Consensus size: 26
9118763 TTCATTTTGA
9118773 TCTTGATTTTGATTTTTT-TCTTCTT
1 TCTTGATTTTGATTTTTTATCTTCTT
** * *
9118798 TCTTCTTTTTG-TTTTTTATTTTGATT
1 TCTTGATTTTGATTTTTTATCTT-CTT
* *
9118824 T-TTGATTTTTGATTTTTTATTTTCAT
1 TCTTGA-TTTTGATTTTTTATCTTCTT
*
9118850 T-TTGACTTTGATTTT
1 TCTTGATTTTGATTTT
9118865 GATTTTTTCT
Statistics
Matches: 54, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
24 6 0.11
25 23 0.43
26 14 0.26
27 11 0.20
ACGTcount: A:0.11, C:0.08, G:0.09, T:0.73
Consensus pattern (26 bp):
TCTTGATTTTGATTTTTTATCTTCTT
Found at i:9124126 original size:3 final size:3
Alignment explanation
Indices: 9124104--9124178 Score: 123
Period size: 3 Copynumber: 24.7 Consensus size: 3
9124094 ATATAATGAG
* *
9124104 AAT AAC AAT GAT ATAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
9124150 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
9124179 CAACATCAAA
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
3 64 0.96
4 3 0.04
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:9127250 original size:18 final size:18
Alignment explanation
Indices: 9127227--9127263 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
9127217 TCAATCTAAA
*
9127227 ACCAAACCAAGGCATACC
1 ACCAAACCAACGCATACC
9127245 ACCAAACCAACGCATACC
1 ACCAAACCAACGCATACC
9127263 A
1 A
9127264 AAGTATCATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.46, C:0.41, G:0.08, T:0.05
Consensus pattern (18 bp):
ACCAAACCAACGCATACC
Found at i:9128349 original size:42 final size:43
Alignment explanation
Indices: 9128272--9128394 Score: 160
Period size: 42 Copynumber: 2.9 Consensus size: 43
9128262 AACTCGCACA
* * * * *
9128272 ATGCC-ATATCCCAGATATGGTCGTACATGCTATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGCAATCACATAACG
*
9128314 ATGCCAATGTCCCAGACATGGTCTTCCATG-AATCACATAACG
1 ATGCCAATGTCCCAGACATGGTCTTACATGCAATCACATAACG
* *
9128356 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAT
1 ATGCCAATGTCCCAGACATGGTCTTACATGCAATCACAT
9128395 CTCAGTATCC
Statistics
Matches: 71, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
42 43 0.61
43 28 0.39
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGCAATCACATAACG
Found at i:9138367 original size:91 final size:91
Alignment explanation
Indices: 9138258--9138441 Score: 341
Period size: 91 Copynumber: 2.0 Consensus size: 91
9138248 TTAATGGAAA
*
9138258 AATAATATTCAAGTAAAAGGATTTCTGCATATTGCTTTGAAAGGTTTTCTAAATAGTACAAGGAC
1 AATAATATTCAAGTAAAAGGATTTCTGCATATTGCTCTGAAAGGTTTTCTAAATAGTACAAGGAC
9138323 CTGAAACAAGACCACTAGTCAGAACT
66 CTGAAACAAGACCACTAGTCAGAACT
**
9138349 AATAATATTCAAGTAAAAGGATTTCTGCATATTGCTCTGAAAGGTTTTCTAAATAGTGTAAGGAC
1 AATAATATTCAAGTAAAAGGATTTCTGCATATTGCTCTGAAAGGTTTTCTAAATAGTACAAGGAC
9138414 CTGAAACAAGACCACTAGTCAGAACT
66 CTGAAACAAGACCACTAGTCAGAACT
9138440 AA
1 AA
9138442 CCAAATTTAA
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
91 90 1.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (91 bp):
AATAATATTCAAGTAAAAGGATTTCTGCATATTGCTCTGAAAGGTTTTCTAAATAGTACAAGGAC
CTGAAACAAGACCACTAGTCAGAACT
Found at i:9138914 original size:44 final size:44
Alignment explanation
Indices: 9138831--9138947 Score: 153
Period size: 44 Copynumber: 2.7 Consensus size: 44
9138821 GGCGAATCTT
*
9138831 ATCTCCCTGAAGTTACAGTGGAGTAGATTAAAGCCACAAGTCTC
1 ATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCACAAGTCTC
* * * * ** *
9138875 ATTTCCCTGAAGTTACAGTGAAGCATATTGAAGTTACAAGTCTT
1 ATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCACAAGTCTC
*
9138919 ATCTCCCTGAAGTTGCAGTGGAGCAGATT
1 ATCTCCCTGAAGTTACAGTGGAGCAGATT
9138948 CAATATGCGA
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 61 1.00
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (44 bp):
ATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCACAAGTCTC
Done.