genome.fa.s13.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  26  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9804984--9805020	2	18.5	2	89	10	58	48	0	2	48	1.15
9806778--9806878	6	16.8	6	97	0	193	49	17	0	32	1.47
9814219--9814268	25	2.0	26	84	4	66	12	12	12	64	1.51
9825575--9825671	27	3.6	27	83	10	110	46	11	21	20	1.82
9825638--9825705	34	2.0	34	85	0	91	45	8	27	17	1.78
9830745--9830926	77	2.4	73	83	8	215	30	11	14	43	1.81
9831433--9832039	303	2.0	304	99	0	1207	36	19	16	27	1.93
9833778--9833839	30	2.1	30	87	0	88	35	16	14	33	1.89
9840749--9840781	3	11.0	3	100	0	66	66	0	0	33	0.92
9842176--9842477	146	2.1	146	99	0	595	28	8	8	54	1.60
9844713--9844883	87	2.0	86	81	6	202	37	17	9	35	1.82
9844925--9845040	19	6.2	18	73	15	67	62	0	2	34	1.15
9845472--9845690	44	5.0	44	98	0	420	30	6	17	45	1.73
9853698--9853751	24	2.2	24	83	0	63	20	27	24	27	1.99
9860000--9860048	21	2.3	22	83	13	59	63	2	2	32	1.17
9861903--9862151	114	2.2	115	81	3	288	32	20	22	24	1.98
9862903--9862985	7	11.7	7	72	12	53	16	1	48	33	1.55
9862928--9862977	13	3.7	13	76	10	55	18	2	50	30	1.58
9862928--9862985	28	2.1	28	90	0	89	17	1	50	31	1.56
9862944--9862982	20	2.0	20	89	0	60	17	2	53	25	1.56
9863146--9863200	21	2.5	22	83	13	62	20	0	41	38	1.52
9863161--9863202	7	5.6	8	88	8	54	23	0	38	38	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9864412--9864453	7	6.0	7	100	0	84	14	0	14	71	1.15
9866543--9867022	30	15.1	30	82	11	573	45	10	1	42	1.49
9866536--9867041	97	5.2	97	100	0	1012	45	10	2	41	1.50
9867136--9867190	25	2.2	25	90	0	83	45	18	0	36	1.49
9867135--9867208	9	8.1	9	77	14	80	44	18	0	36	1.50
9867148--9867206	25	2.6	22	89	10	84	45	18	0	35	1.50
9869660--9869728	21	3.3	21	89	0	102	34	17	40	7	1.77
9870182--9870311	42	3.1	42	88	1	179	25	20	18	36	1.95
9870718--9870810	41	2.3	41	83	10	111	34	21	24	19	1.96
9870948--9871028	41	2.0	41	85	0	108	19	20	27	32	1.97
9870963--9871136	41	4.2	41	77	4	154	22	24	22	29	1.99
9871107--9871196	41	2.2	41	84	4	110	31	25	23	20	1.98
9871118--9871197	41	2.0	41	87	5	117	32	26	23	17	1.97
9872100--9872131	15	2.1	15	94	0	55	43	0	3	53	1.16
9872535--9872686	71	2.1	73	87	2	218	24	26	19	29	1.98
9879072--9879233	66	2.5	66	86	6	213	40	17	27	14	1.88
9879430--9879457	10	2.8	10	100	0	56	28	0	7	64	1.20
9879704--9879740	10	3.7	10	92	7	58	32	0	5	62	1.18
9879695--9879740	20	2.3	20	78	14	51	30	0	4	65	1.12
9879879--9880026	43	3.4	43	80	7	167	22	18	30	28	1.97
9879969--9880114	43	3.4	44	82	4	140	21	20	26	32	1.98
9880204--9880246	22	2.0	22	90	0	68	46	27	13	11	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9883169--9883206	19	2.0	19	85	10	51	34	0	5	60	1.19
9886416--9886461	22	2.1	22	91	0	74	28	6	34	30	1.82
9892363--9892391	15	1.9	15	100	0	58	20	0	3	75	0.94
9898340--9898411	35	2.1	35	97	0	135	19	26	19	34	1.96
9903328--9903354	6	4.5	6	100	0	54	85	0	0	14	0.61
9906662--9906770	39	2.8	39	83	5	114	35	6	2	55	1.40
9906685--9906765	10	8.4	10	68	8	51	33	4	2	59	1.32
9906653--9906734	20	4.1	20	74	4	58	36	4	2	56	1.34
9906673--9906770	39	2.5	39	85	5	117	34	7	2	56	1.38
9909180--9909222	15	2.8	15	89	3	59	20	0	27	51	1.48
9909217--9909252	6	6.0	6	100	0	72	16	0	50	33	1.46
9909477--9909537	21	2.9	21	82	4	61	8	22	39	29	1.83
9909939--9910754	415	2.0	413	92	1	1346	23	24	22	29	1.99
9911870--9911967	51	1.9	51	89	4	153	47	1	25	25	1.58
9911931--9911980	11	4.5	11	90	5	75	46	0	32	22	1.52
9913176--9913468	43	6.8	44	84	5	334	27	32	18	21	1.97
9914524--9914584	23	2.7	23	92	5	97	34	27	8	29	1.86
9914920--9915003	39	2.1	39	86	4	114	51	7	11	29	1.65
9917243--9917292	26	1.9	26	100	0	100	24	0	6	70	1.10
9917245--9917306	26	2.3	26	83	8	72	25	3	9	61	1.42
9917369--9917543	88	2.0	90	90	2	282	28	9	12	50	1.69
9918204--9918332	7	17.9	7	67	15	66	36	40	0	23	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9918201--9918319	15	8.1	15	80	11	81	36	39	0	23	1.55
9918613--9919171	114	4.9	114	92	2	872	25	26	23	24	2.00
9922319--9922346	9	3.1	9	100	0	56	57	10	0	32	1.33
9922419--9922460	16	2.6	16	92	0	66	42	7	2	47	1.43
9922434--9922489	23	2.5	23	82	2	69	44	1	1	51	1.22
9922315--9922452	66	2.2	66	86	11	191	48	9	2	39	1.50
9923695--9923964	135	2.0	135	92	0	450	38	11	14	35	1.83
9927652--9927729	40	2.0	40	94	0	138	34	26	21	16	1.95
9927788--9928008	41	5.4	41	87	3	293	19	24	26	28	1.99
9927788--9928009	123	1.8	123	89	2	347	19	24	26	29	1.99
9930048--9930076	14	2.1	14	100	0	58	34	13	0	51	1.42
9930823--9930914	43	2.1	43	93	0	157	19	20	30	29	1.97
9933097--9933355	128	2.0	129	99	0	511	45	4	16	33	1.69
9938947--9939012	28	2.4	28	73	16	66	39	3	4	53	1.37
9938993--9939031	20	2.0	20	85	5	53	41	2	5	51	1.38
9953293--9953357	27	2.4	27	84	5	87	35	0	3	61	1.12
9953313--9953440	10	13.2	10	67	22	60	28	3	3	65	1.23
9953285--9953440	58	3.0	47	73	20	132	30	2	3	64	1.23
9953376--9953432	22	2.8	21	84	7	73	24	0	1	73	0.92
9953398--9953451	26	2.0	28	85	7	76	22	1	1	74	1.02
9970992--9971053	32	1.9	33	86	3	90	50	9	8	32	1.65
9971719--9971753	16	2.1	17	89	5	54	42	11	0	45	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9971771--9971810	20	2.0	20	100	0	80	45	15	5	35	1.68
9990840--9991998	388	3.0	388	92	4	1805	30	26	14	27	1.95
9992788--9992855	24	2.8	24	80	6	75	38	20	22	19	1.94
9995784--9995912	64	2.0	64	81	0	150	21	20	23	34	1.96
10004471--10004518	24	2.0	24	87	0	69	16	20	25	37	1.93
10004481--10004534	24	2.2	25	81	12	60	16	20	25	37	1.93
10004393--10004566	72	2.4	73	77	4	181	19	21	21	37	1.94
10006118--10006165	21	2.3	21	88	0	69	16	25	16	41	1.89
10028211--10028323	44	2.6	44	82	9	133	23	20	30	25	1.99
10050575--10050599	9	2.8	9	100	0	50	0	8	0	92	0.40
10050843--10050881	18	2.1	19	85	4	53	69	2	0	28	1.02
10051228--10051279	27	2.0	26	96	3	95	19	30	30	19	1.96
10052483--10052552	28	2.5	28	85	0	95	50	0	11	38	1.39
10053356--10053399	22	2.0	22	91	4	72	38	2	0	59	1.10
10056073--10056136	30	2.2	27	81	13	74	31	9	12	46	1.73
10056769--10056850	43	2.0	42	85	4	112	48	3	12	35	1.58
10058257--10058289	16	2.0	17	94	5	59	18	12	6	63	1.48
10058671--10058748	29	2.6	29	83	4	93	47	14	14	24	1.80
10058696--10058769	29	2.5	29	84	4	85	50	14	13	21	1.78
10059241--10059433	75	2.5	76	89	5	291	45	7	2	45	1.43
10065303--10065358	29	1.9	29	85	7	78	7	28	1	62	1.32
10065772--10065836	31	2.1	31	97	0	121	18	32	9	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10067389--10067439	25	2.0	25	100	0	102	27	27	5	39	1.79
10075578--10076144	125	4.5	125	83	3	701	30	16	22	30	1.96
10077542--10077566	13	1.9	13	100	0	50	48	20	8	24	1.76
10077752--10077877	41	3.1	41	86	4	139	28	23	19	28	1.98
10079471--10079519	25	2.0	25	88	8	73	51	2	0	46	1.12
10082061--10082500	113	4.0	113	89	4	643	41	9	9	39	1.70
10082509--10082948	43	10.2	43	82	7	439	24	1	29	45	1.60
10082509--10082948	22	20.4	22	80	7	449	24	1	29	45	1.60
10082509--10082948	65	6.8	65	78	7	432	24	1	29	45	1.60
10083485--10083527	18	2.4	18	84	0	59	46	9	27	16	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145