Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47972186
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2603476 characters in sequence are not A, C, G, or T
File 40 of 145
Found at i:14291275 original size:62 final size:59
Alignment explanation
Indices: 14291189--14291304 Score: 153
Period size: 62 Copynumber: 1.9 Consensus size: 59
14291179 TTTTAATAGT
*
14291189 TTTAATATTAAATTAAATTAAATATTTATTTTGTAAATAAATATTCTATTAATTTAAAAAGA
1 TTTAATATTAAATTAAATTAAATATTTATCTTG---ATAAATATTCTATTAATTTAAAAAGA
* * *
14291251 TTTAATATTAAATTTAATCT-AATATTTATCTTGATAAGTATTTTATTAATTTAA
1 TTTAATATTAAATTAAAT-TAAATATTTATCTTGATAAATATTCTATTAATTTAA
14291305 TATTAAAATG
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
59 19 0.39
62 29 0.59
63 1 0.02
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (59 bp):
TTTAATATTAAATTAAATTAAATATTTATCTTGATAAATATTCTATTAATTTAAAAAGA
Found at i:14292927 original size:19 final size:19
Alignment explanation
Indices: 14292903--14292940 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
14292893 CCACTGTCAC
14292903 CCACCGTAATCAAATTTGT
1 CCACCGTAATCAAATTTGT
14292922 CCACCGTAATCAAATTTGT
1 CCACCGTAATCAAATTTGT
14292941 TAGTAACTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.26, G:0.11, T:0.32
Consensus pattern (19 bp):
CCACCGTAATCAAATTTGT
Found at i:14296977 original size:45 final size:45
Alignment explanation
Indices: 14296922--14297007 Score: 118
Period size: 45 Copynumber: 1.9 Consensus size: 45
14296912 GCTATACGGC
* * * * * *
14296922 AAAATTAGTAAGACCATAGTTGAAAGATGTTATGGCATCATGATA
1 AAAATGAGTAAGACCAAAGCTGAAAGACGCTATGACATCATGATA
14296967 AAAATGAGTAAGACCAAAGCTGAAAGACGCTATGACATCAT
1 AAAATGAGTAAGACCAAAGCTGAAAGACGCTATGACATCAT
14297008 ATGAAAGTGT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 35 1.00
ACGTcount: A:0.44, C:0.13, G:0.20, T:0.23
Consensus pattern (45 bp):
AAAATGAGTAAGACCAAAGCTGAAAGACGCTATGACATCATGATA
Found at i:14297282 original size:74 final size:74
Alignment explanation
Indices: 14297042--14297279 Score: 334
Period size: 74 Copynumber: 3.2 Consensus size: 74
14297032 TAGGACTAAA
* * * * * *
14297042 ACCATGGCTGAAAGATACTATGACATCCTTTGATAGTCCGTTGGGACAATAAACATGGGGTTATC
1 ACCATAGCTGAAAGATACTATGACATCCTTTGATAGTTCGTCGAGACAGTAAACATGGGGTTATA
14297107 TTGTGTAAG
66 TTGTGTAAG
* ** *
14297116 ACCATAGCTGAAAGACACTATGACATCCTTTGATAGTTCACCGAGACAGTAAACACT-AGGTTAT
1 ACCATAGCTGAAAGATACTATGACATCCTTTGATAGTTCGTCGAGACAGTAAACA-TGGGGTTAT
*
14297180 ATTATGTAAG
65 ATTGTGTAAG
**
14297190 ACCATAGCTGAAAGATGTTATGACATCCTTTGATAGTTCGTCGAGACAGTAAACATGGGGTTATA
1 ACCATAGCTGAAAGATACTATGACATCCTTTGATAGTTCGTCGAGACAGTAAACATGGGGTTATA
14297255 TTGTGTAAG
66 TTGTGTAAG
*
14297264 ACCATAGCTAAAAGAT
1 ACCATAGCTGAAAGAT
14297280 GTTGCAACAT
Statistics
Matches: 143, Mismatches: 19, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
73 1 0.01
74 141 0.99
75 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (74 bp):
ACCATAGCTGAAAGATACTATGACATCCTTTGATAGTTCGTCGAGACAGTAAACATGGGGTTATA
TTGTGTAAG
Found at i:14297324 original size:27 final size:27
Alignment explanation
Indices: 14297293--14297382 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
14297283 GCAACATCAT
* * *
14297293 AGATAGACTATCGGGACACTAAACATG
1 AGATAGTCTAACGGGACATTAAACATG
* *
14297320 AGATAGTCTAACGAGACATTAAGCATG
1 AGATAGTCTAACGGGACATTAAACATG
* * *
14297347 GGATAGTCCAACGGGACATTAAACACG
1 AGATAGTCTAACGGGACATTAAACATG
14297374 AGATAGTCT
1 AGATAGTCT
14297383 GTTGGGACAG
Statistics
Matches: 51, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (27 bp):
AGATAGTCTAACGGGACATTAAACATG
Found at i:14307240 original size:23 final size:23
Alignment explanation
Indices: 14307213--14307260 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
14307203 TGAAAGTGTA
14307213 AACTTTAGTTATTTATTTGGGAT
1 AACTTTAGTTATTTATTTGGGAT
14307236 AACTTTAGTTATTTATTTGGGAT
1 AACTTTAGTTATTTATTTGGGAT
14307259 AA
1 AA
14307261 TATAATTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.29, C:0.04, G:0.17, T:0.50
Consensus pattern (23 bp):
AACTTTAGTTATTTATTTGGGAT
Found at i:14307268 original size:19 final size:21
Alignment explanation
Indices: 14307217--14307268 Score: 54
Period size: 23 Copynumber: 2.5 Consensus size: 21
14307207 AGTGTAAACT
*
14307217 TTAGTTATTTATTTGGGATAA
1 TTAGTAATTTATTTGGGATAA
*
14307238 CTTTAGTTATTTATTTGGGATAA
1 --TTAGTAATTTATTTGGGATAA
14307261 -TA-TAATTT
1 TTAGTAATTT
14307269 TTAGCTCTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 5 0.18
20 2 0.07
23 21 0.75
ACGTcount: A:0.29, C:0.02, G:0.15, T:0.54
Consensus pattern (21 bp):
TTAGTAATTTATTTGGGATAA
Found at i:14309268 original size:6 final size:6
Alignment explanation
Indices: 14309259--14309284 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
14309249 GAAGAAGGAC
14309259 GAGAGG GAGAGG GAGAGG GAGAGG GA
1 GAGAGG GAGAGG GAGAGG GAGAGG GA
14309285 AAAAAATGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.65, T:0.00
Consensus pattern (6 bp):
GAGAGG
Found at i:14309714 original size:20 final size:20
Alignment explanation
Indices: 14309689--14309729 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
14309679 AAACTGGGGT
*
14309689 ATACAAACTTTTTTTGATAA
1 ATACAAACGTTTTTTGATAA
14309709 ATACAAACGTTTTTTGATAA
1 ATACAAACGTTTTTTGATAA
14309729 A
1 A
14309730 CCGGGTGTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.41, C:0.10, G:0.07, T:0.41
Consensus pattern (20 bp):
ATACAAACGTTTTTTGATAA
Found at i:14309791 original size:6 final size:6
Alignment explanation
Indices: 14309780--14309810 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
14309770 TTTGTGGTGG
*
14309780 ATTAAA ATTAAA ATTAAA ATTAAG ATTAAA A
1 ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA A
14309811 AAAAAACTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (6 bp):
ATTAAA
Found at i:14310986 original size:20 final size:20
Alignment explanation
Indices: 14310961--14311003 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
14310951 TAGAAGTCCG
14310961 TCCTACCAGATTTGTTGCAT
1 TCCTACCAGATTTGTTGCAT
14310981 TCCTACCAGATTTGTTGCAT
1 TCCTACCAGATTTGTTGCAT
14311001 TCC
1 TCC
14311004 CTGAAGTGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.19, C:0.28, G:0.14, T:0.40
Consensus pattern (20 bp):
TCCTACCAGATTTGTTGCAT
Found at i:14324048 original size:124 final size:122
Alignment explanation
Indices: 14323900--14324190 Score: 350
Period size: 124 Copynumber: 2.4 Consensus size: 122
14323890 TTTTCCCTTA
* * * *
14323900 ATTTGTTGAATGATTGTACCAAAAGATTCTATTGTAGTTTTTCAATTTTTTCAAATACTT-CAAA
1 ATTTATTGAATGATTGTACCAAAAGATTCTATCGTAGTTTTTCAATTTATTCAAACACTTCCAAA
* * ** *
14323964 ACAAAATTTACACGGTTTACTTTAGCCCTTTACTTACATTTTACCCATTTCCCCCCTTTT
66 ACAAAATTTACACGATTTACTTTAGCCATTTACTTACATACTACCCATTT--CCCC-TGT
* ** * *
14324024 ATTTATTGAATGATTATACCAAAAGATTCTATCACAGTTTTCCAATTTATTCAAGCACTTCCAAA
1 ATTTATTGAATGATTGTACCAAAAGATTCTATCGTAGTTTTTCAATTTATTCAAACACTTCCAAA
* * * ***
14324089 ACAAAATTTACACTATTTACTTTAGTCATTTACTTACATACTACCCCTTTTTTCTGT
66 ACAAAATTTACACGATTTACTTTAGCCATTTACTTACATACTACCCATTTCCCCTGT
* *
14324146 ATTTTTTGAATGATTGTGCCAAAAGATTCTATCGTAGTTTTTCAA
1 ATTTATTGAATGATTGTACCAAAAGATTCTATCGTAGTTTTTCAA
14324191 ACACTTCAAA
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
122 41 0.29
123 1 0.01
124 51 0.36
125 47 0.34
ACGTcount: A:0.30, C:0.19, G:0.08, T:0.43
Consensus pattern (122 bp):
ATTTATTGAATGATTGTACCAAAAGATTCTATCGTAGTTTTTCAATTTATTCAAACACTTCCAAA
ACAAAATTTACACGATTTACTTTAGCCATTTACTTACATACTACCCATTTCCCCTGT
Found at i:14326152 original size:34 final size:36
Alignment explanation
Indices: 14326105--14326181 Score: 122
Period size: 36 Copynumber: 2.2 Consensus size: 36
14326095 AAAATTACAC
*
14326105 TGATTATAGA-GG-GAAGCCCGACAATTTTTCTCTA
1 TGATTATAGAGGGAGAAGCCCCACAATTTTTCTCTA
*
14326139 TGATTATATAGGGAGAAGCCCCACAATTTTTCTCTA
1 TGATTATAGAGGGAGAAGCCCCACAATTTTTCTCTA
14326175 TGATTAT
1 TGATTAT
14326182 GCCCTCAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
34 9 0.23
35 2 0.05
36 28 0.72
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (36 bp):
TGATTATAGAGGGAGAAGCCCCACAATTTTTCTCTA
Found at i:14326449 original size:24 final size:24
Alignment explanation
Indices: 14326422--14326468 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
14326412 AAAATCAAAT
* *
14326422 ATATTATGCTAATAAATGCTAAAC
1 ATATTATACTAATAAATACTAAAC
*
14326446 ATATTATACTCATAAATACTAAA
1 ATATTATACTAATAAATACTAAA
14326469 TCTTCTAGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.49, C:0.13, G:0.04, T:0.34
Consensus pattern (24 bp):
ATATTATACTAATAAATACTAAAC
Found at i:14330872 original size:24 final size:24
Alignment explanation
Indices: 14330830--14330881 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
14330820 AATCAAAGTC
** *
14330830 AAATATATTATGTTAATAAATGCT
1 AAATATATTATACTAATAAATACT
*
14330854 AAATATATTATACTCATAAATACT
1 AAATATATTATACTAATAAATACT
14330878 AAAT
1 AAAT
14330882 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:14336325 original size:15 final size:17
Alignment explanation
Indices: 14336299--14336333 Score: 56
Period size: 15 Copynumber: 2.2 Consensus size: 17
14336289 AATTAGTTGT
14336299 TATTTCAATTGTTTA-A
1 TATTTCAATTGTTTATA
14336315 TATTT-AATTGTTTATA
1 TATTTCAATTGTTTATA
14336331 TAT
1 TAT
14336334 GAATCGAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.60
Consensus pattern (17 bp):
TATTTCAATTGTTTATA
Found at i:14336560 original size:45 final size:44
Alignment explanation
Indices: 14336408--14336605 Score: 188
Period size: 45 Copynumber: 4.5 Consensus size: 44
14336398 ACCAGAAATG
** * *
14336408 AGTAAGACCATAGCTGAAAGACGTTATAGCATCAAAATTCTGTCG
1 AGTAAGACCATAGCTGAAAGACGTTAT-GCATCACGATTCTATCA
* *
14336453 AGTAAGACCATAGCTGAAAGACCTTATGGCATCATGATTCTAT--
1 AGTAAGACCATAGCTGAAAGACGTTAT-GCATCACGATTCTATCA
*
14336496 --TAAGACCATAGCTGAAAGATGTTATGTCATCACGATTCTATCA
1 AGTAAGACCATAGCTGAAAGACGTTATG-CATCACGATTCTATCA
* * * * * **
14336539 AGTAAGACCATAGCTGAAAGATGCTATGACATTACGAATCAAAGA
1 AGTAAGACCATAGCTGAAAGACGTTATG-CATCACGATTCTATCA
* *
14336584 AATAAGACCATAGTTGAAAGAC
1 AGTAAGACCATAGCTGAAAGAC
14336606 ACTATGGCAA
Statistics
Matches: 130, Mismatches: 18, Indels: 10
0.82 0.11 0.06
Matches are distributed among these distances:
40 1 0.01
41 36 0.28
45 93 0.72
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (44 bp):
AGTAAGACCATAGCTGAAAGACGTTATGCATCACGATTCTATCA
Found at i:14336611 original size:45 final size:44
Alignment explanation
Indices: 14336541--14336697 Score: 120
Period size: 45 Copynumber: 3.5 Consensus size: 44
14336531 TTCTATCAAG
* ** *
14336541 TAAGACCATAGCTGAAAGATGCTATGACATTACGAATCAAAGAAA
1 TAAGACCATAGTTGAAAGACACTATGACATCACGAAT-AAAGAAA
* *
14336586 TAAGACCATAGTTGAAAGACACTATGGCAACATGACAGAA-AATG-AA
1 TAAGACCATAGTTGAAAGACACTAT-G--ACATCAC-GAATAAAGAAA
* * * * * *
14336632 TATGACCATGGTTGAAAGACACTATGGCATCAAGAATGGAATAAA
1 TAAGACCATAGTTGAAAGACACTATGACATCACGAAT-AAAGAAA
* *
14336677 TAAGATCATGGTTGAAAGACA
1 TAAGACCATAGTTGAAAGACA
14336698 TCATGGCACT
Statistics
Matches: 90, Mismatches: 15, Indels: 14
0.76 0.13 0.12
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
44 1 0.01
45 44 0.49
46 26 0.29
47 3 0.03
48 6 0.07
49 3 0.03
ACGTcount: A:0.45, C:0.14, G:0.20, T:0.20
Consensus pattern (44 bp):
TAAGACCATAGTTGAAAGACACTATGACATCACGAATAAAGAAA
Found at i:14338412 original size:42 final size:42
Alignment explanation
Indices: 14338333--14338414 Score: 101
Period size: 42 Copynumber: 2.0 Consensus size: 42
14338323 TAGACACAAG
* **
14338333 GGCTGGAACACGACCGTGTGTCTCAATTCAGTGAGTTACACA
1 GGCTGGAACACGACCGTGTGTCCCAATTCAGAAAGTTACACA
* * **
14338375 GGCTGGAACACGGCTGTGTGTCCCAATTTTGAAAGTTACA
1 GGCTGGAACACGACCGTGTGTCCCAATTCAGAAAGTTACA
14338415 AGGTCTAGGG
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (42 bp):
GGCTGGAACACGACCGTGTGTCCCAATTCAGAAAGTTACACA
Found at i:14339706 original size:17 final size:17
Alignment explanation
Indices: 14339680--14339769 Score: 67
Period size: 17 Copynumber: 5.2 Consensus size: 17
14339670 ATCGTAGGAT
* *
14339680 TGCGAACTCACCAAATG
1 TGCGAGCTCACCAAATC
*
14339697 TGCGAGCTCACCCAAAAC
1 TGCGAGCTCA-CCAAATC
* *
14339715 TGTGAGCTCATCAAGA-C
1 TGCGAGCTCACCAA-ATC
* *
14339732 TGCGAGCTCTCC-AATAG
1 TGCGAGCTCACCAAAT-C
*
14339749 TGCGAGCTCACCAAAGC
1 TGCGAGCTCACCAAATC
14339766 TGCG
1 TGCG
14339770 TAGTCTGGGA
Statistics
Matches: 56, Mismatches: 12, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
15 1 0.02
16 1 0.02
17 37 0.66
18 17 0.30
ACGTcount: A:0.29, C:0.31, G:0.22, T:0.18
Consensus pattern (17 bp):
TGCGAGCTCACCAAATC
Found at i:14343449 original size:4 final size:4
Alignment explanation
Indices: 14343442--14343472 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
14343432 CATACATACA
14343442 TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TAT
14343473 ATAGGAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:14346922 original size:14 final size:14
Alignment explanation
Indices: 14346903--14346929 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14346893 CTTGGTAGAG
14346903 TAAAAAAATAAAAT
1 TAAAAAAATAAAAT
14346917 TAAAAAAATAAAA
1 TAAAAAAATAAAA
14346930 CATTTGAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (14 bp):
TAAAAAAATAAAAT
Found at i:14352206 original size:41 final size:42
Alignment explanation
Indices: 14352149--14352291 Score: 177
Period size: 41 Copynumber: 3.5 Consensus size: 42
14352139 GCTTCTATTC
*
14352149 AGCTCTTACAAGCTTCTATTCAACTCTTATGAG-TTCTGTTA
1 AGCTCTTACGAGCTTCTATTCAACTCTTATGAGATTCTGTTA
* * *
14352190 AGCTCTTATGAGCTTCTGTTCAACTCTTATGAGATTCTGTTC
1 AGCTCTTACGAGCTTCTATTCAACTCTTATGAGATTCTGTTA
* * *
14352232 AGCTCTTACGAGCTTTTGTTCAACT-TT-TGAGTTTCTGTTTA
1 AGCTCTTACGAGCTTCTATTCAACTCTTATGAGATTCTG-TTA
*
14352273 A-CTCTTATGAGCTTCTATT
1 AGCTCTTACGAGCTTCTATT
14352292 TAGCTTTCGA
Statistics
Matches: 89, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
40 24 0.27
41 35 0.39
42 30 0.34
ACGTcount: A:0.20, C:0.20, G:0.15, T:0.45
Consensus pattern (42 bp):
AGCTCTTACGAGCTTCTATTCAACTCTTATGAGATTCTGTTA
Found at i:14352238 original size:62 final size:61
Alignment explanation
Indices: 14352120--14352291 Score: 177
Period size: 62 Copynumber: 2.8 Consensus size: 61
14352110 ATGTTTTACT
* * * ** *
14352120 TTCTGTTTAGCTTTTTCGAGCTTCTATTCAGCTCTTACAAGCTTCTATTCAACTCTTATGAG-
1 TTCTGTTAAGC-TTTT-GAGCTTCTGTTCAACTCTTATGAGCTTCTATTCAACTCTTACGAGC
* * *
14352182 TTCTGTTAAGCTCTTATGAGCTTCTGTTCAACTCTTATGAGATTCTGTTCAGCTCTTACGAGC
1 TTCTGTTAAGCT-TT-TGAGCTTCTGTTCAACTCTTATGAGCTTCTATTCAACTCTTACGAGC
* * *
14352245 TTTTGTTCAA-CTTTTGAGTTTCTGTTTAACTCTTATGAGCTTCTATT
1 TTCTGTT-AAGCTTTTGAGCTTCTGTTCAACTCTTATGAGCTTCTATT
14352292 TAGCTTTCGA
Statistics
Matches: 92, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
61 30 0.33
62 51 0.55
63 9 0.10
64 2 0.02
ACGTcount: A:0.19, C:0.20, G:0.15, T:0.47
Consensus pattern (61 bp):
TTCTGTTAAGCTTTTGAGCTTCTGTTCAACTCTTATGAGCTTCTATTCAACTCTTACGAGC
Found at i:14352251 original size:21 final size:21
Alignment explanation
Indices: 14352120--14352310 Score: 140
Period size: 21 Copynumber: 9.3 Consensus size: 21
14352110 ATGTTTTACT
* * *
14352120 TTCTGTTTAGCTTTTTCGAGC
1 TTCTGTTCAGCTCTTACGAGC
* *
14352141 TTCTATTCAGCTCTTACAAGC
1 TTCTGTTCAGCTCTTACGAGC
* * *
14352162 TTCTATTCAACTCTTATGAG-
1 TTCTGTTCAGCTCTTACGAGC
* *
14352182 TTCTGTTAAGCTCTTATGAGC
1 TTCTGTTCAGCTCTTACGAGC
* * *
14352203 TTCTGTTCAACTCTTATGAGA
1 TTCTGTTCAGCTCTTACGAGC
14352224 TTCTGTTCAGCTCTTACGAGC
1 TTCTGTTCAGCTCTTACGAGC
* * * *
14352245 TTTTGTTCAACT-TT-TGAGT
1 TTCTGTTCAGCTCTTACGAGC
* * *
14352264 TTCTGTTTAACTCTTATGAGC
1 TTCTGTTCAGCTCTTACGAGC
* *
14352285 TTCTATTTAGCT-TT-CGAGC
1 TTCTGTTCAGCTCTTACGAGC
*
14352304 TTATGTT
1 TTCTGTT
14352311 GGCGTATTTG
Statistics
Matches: 138, Mismatches: 29, Indels: 8
0.79 0.17 0.05
Matches are distributed among these distances:
19 22 0.16
20 23 0.17
21 93 0.67
ACGTcount: A:0.18, C:0.20, G:0.15, T:0.47
Consensus pattern (21 bp):
TTCTGTTCAGCTCTTACGAGC
Found at i:14352276 original size:61 final size:59
Alignment explanation
Indices: 14352198--14352310 Score: 154
Period size: 61 Copynumber: 1.9 Consensus size: 59
14352188 TAAGCTCTTA
* *
14352198 TGAGCTTCTGTTCAACTCTTATGAGATTCTGTTCAGCTCTTACGAGCTTTTGTTCAACTTT
1 TGAGCTTCTGTTCAACTCTTATGAGATTCTATTCAGCT-TT-CGAGCTTATGTTCAACTTT
* * * *
14352259 TGAGTTTCTGTTTAACTCTTATGAGCTTCTATTTAGCTTTCGAGCTTATGTT
1 TGAGCTTCTGTTCAACTCTTATGAGATTCTATTCAGCTTTCGAGCTTATGTT
14352311 GGCGTATTTG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
59 11 0.24
60 2 0.04
61 33 0.72
ACGTcount: A:0.18, C:0.19, G:0.17, T:0.47
Consensus pattern (59 bp):
TGAGCTTCTGTTCAACTCTTATGAGATTCTATTCAGCTTTCGAGCTTATGTTCAACTTT
Found at i:14354746 original size:28 final size:28
Alignment explanation
Indices: 14354714--14354769 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
14354704 GTATGCGATG
14354714 AGTTGATCATGAATCGGTACCTTGATAT
1 AGTTGATCATGAATCGGTACCTTGATAT
14354742 AGTTGATCATGAATCGGTACCTTGATAT
1 AGTTGATCATGAATCGGTACCTTGATAT
14354770 GTAAGGTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (28 bp):
AGTTGATCATGAATCGGTACCTTGATAT
Found at i:14365035 original size:134 final size:134
Alignment explanation
Indices: 14364756--14365351 Score: 737
Period size: 134 Copynumber: 4.5 Consensus size: 134
14364746 GTAAATAAGT
* *** * * * *
14364756 GAACTCTTAATGAACTGTTCATGATAACAAATCAATAAACTGAAATTGTGATCATAAATCAGCAA
1 GAACTCTTAATGAATTGTTCATGATCGTAAATCAATGAACTGAAGTTGTGATCGTAAATTAGCAA
* * * *
14364821 GCTTT-AAAATTACAGTTGTGATCGTAAATCAATGAATTGTTTAAGTGGAGTCGCGATCGTAAAT
66 GCTTTAAAAATGACAGTTGTGATCGTAAATCAACGAACTGTTTAAGTGGAGTAGCGATCGTAAAT
*
14364885 CAAC
131 CGAC
* * **
14364889 AAACTCTTAATGAATTGTTCATGATCGTAAATTAATGAACTGAAACTGTGATCGTAAATTAGCAA
1 GAACTCTTAATGAATTGTTCATGATCGTAAATCAATGAACTGAAGTTGTGATCGTAAATTAGCAA
* * * * *
14364954 ACTTTAAAAATGACAATTGTGATCGTAAATTAGCGAACTGTTTAAGTGGAGTAGCAATCGTAAAT
66 GCTTTAAAAATGACAGTTGTGATCGTAAATCAACGAACTGTTTAAGTGGAGTAGCGATCGTAAAT
* **
14365019 TGGT
131 CGAC
* * * * * **
14365023 GAACTCTTAATGAATTGTTCATCATCGTAAATCAATGAACTGAAGTTATGGTCTTAAATCAGTGA
1 GAACTCTTAATGAATTGTTCATGATCGTAAATCAATGAACTGAAGTTGTGATCGTAAATTAGCAA
* * * * * * *
14365088 GCTTTAAAAATAACAGTTGTGATCGTGAATCAATGAACTATTTAAGTGGAGTCGCGATCTTAGAT
66 GCTTTAAAAATGACAGTTGTGATCGTAAATCAACGAACTGTTTAAGTGGAGTAGCGATCGTAAAT
14365153 CGAC
131 CGAC
* * **
14365157 GAAATCTTAATGAATTATTCATGATCGTAAATCAATGAACTGAAGTTGTGATCGTAAATTAGTGA
1 GAACTCTTAATGAATTGTTCATGATCGTAAATCAATGAACTGAAGTTGTGATCGTAAATTAGCAA
* *
14365222 GCTTTAAAAATGACAGTTGTGATCGTAAATCAACAAACTGTTTAAGTGGAGTAGTGATCGTAAAT
66 GCTTTAAAAATGACAGTTGTGATCGTAAATCAACGAACTGTTTAAGTGGAGTAGCGATCGTAAAT
*
14365287 TGAC
131 CGAC
* * *
14365291 GAAATCTTAATGAATTGCTCATGATCGTAAATCAATGAACTGAAGTTAT-ATCGTAAATTAG
1 GAACTCTTAATGAATTGTTCATGATCGTAAATCAATGAACTGAAGTTGTGATCGTAAATTAG
14365352 AGAGTTTTAA
Statistics
Matches: 393, Mismatches: 69, Indels: 2
0.85 0.15 0.00
Matches are distributed among these distances:
133 71 0.18
134 322 0.82
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.32
Consensus pattern (134 bp):
GAACTCTTAATGAATTGTTCATGATCGTAAATCAATGAACTGAAGTTGTGATCGTAAATTAGCAA
GCTTTAAAAATGACAGTTGTGATCGTAAATCAACGAACTGTTTAAGTGGAGTAGCGATCGTAAAT
CGAC
Found at i:14365196 original size:268 final size:267
Alignment explanation
Indices: 14364735--14365348 Score: 836
Period size: 268 Copynumber: 2.3 Consensus size: 267
14364725 CGTGAGAATA
* ** * *** *
14364735 GAGTTGCAATCGTAAATAAGTGAACTCTTAATGAACTGTTCATGATAACAAATCAATAAACTGAA
1 GAGTAGCAATCGTAAATTGGTGAACTCTTAATGAATTGTTCATGATCGTAAATCAATGAACTGAA
* * * * *
14364800 ATTGTGATCATAAATCAGCAAGCTTTAAAATTACAGTTGTGATCGTAAATCAATGAATTGTTTAA
66 GTTATGATCATAAATCAGCAAGCTTTAAAATAACAGTTGTGATCGTAAATCAATGAACTATTTAA
* *
14364865 GTGGAGTCGCGATCGTAAATCAACAAACTCTTAATGAATTGTTCATGATCGTAAATTAATGAACT
131 GTGGAGTCGCGATCGTAAATCAACAAACTCTTAATGAATTATTCATGATCGTAAATCAATGAACT
* * *
14364930 GAAACTGTGATCGTAAATTAGCAAACTTTAAAAATGACAATTGTGATCGTAAATTAGCGAACTGT
196 GAAACTGTGATCGTAAATTAGCAAACTTTAAAAATGACAATTGTGATCGTAAATCAACAAACTGT
14364995 TTAAGTG
261 TTAAGTG
*
14365002 GAGTAGCAATCGTAAATTGGTGAACTCTTAATGAATTGTTCATCATCGTAAATCAATGAACTGAA
1 GAGTAGCAATCGTAAATTGGTGAACTCTTAATGAATTGTTCATGATCGTAAATCAATGAACTGAA
* * ** *
14365067 GTTATGGTCTTAAATCAGTGAGCTTTAAAAATAACAGTTGTGATCGTGAATCAATGAACTATTTA
66 GTTATGATCATAAATCAGCAAGCTTT-AAAATAACAGTTGTGATCGTAAATCAATGAACTATTTA
* * *
14365132 AGTGGAGTCGCGATCTTAGATCGACGAAA-TCTTAATGAATTATTCATGATCGTAAATCAATGAA
130 AGTGGAGTCGCGATCGTAAATCAAC-AAACTCTTAATGAATTATTCATGATCGTAAATCAATGAA
** ** * *
14365196 CTGAAGTTGTGATCGTAAATTAGTGAGCTTTAAAAATGACAGTTGTGATCGTAAATCAACAAACT
194 CTGAAACTGTGATCGTAAATTAGCAAACTTTAAAAATGACAATTGTGATCGTAAATCAACAAACT
14365261 GTTTAAGTG
259 GTTTAAGTG
** ** * *
14365270 GAGTAGTGATCGTAAATTGACGAAATCTTAATGAATTGCTCATGATCGTAAATCAATGAACTGAA
1 GAGTAGCAATCGTAAATTGGTGAACTCTTAATGAATTGTTCATGATCGTAAATCAATGAACTGAA
*
14365335 GTTAT-ATCGTAAAT
66 GTTATGATCATAAAT
14365349 TAGAGAGTTT
Statistics
Matches: 303, Mismatches: 42, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
267 83 0.27
268 217 0.72
269 3 0.01
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.32
Consensus pattern (267 bp):
GAGTAGCAATCGTAAATTGGTGAACTCTTAATGAATTGTTCATGATCGTAAATCAATGAACTGAA
GTTATGATCATAAATCAGCAAGCTTTAAAATAACAGTTGTGATCGTAAATCAATGAACTATTTAA
GTGGAGTCGCGATCGTAAATCAACAAACTCTTAATGAATTATTCATGATCGTAAATCAATGAACT
GAAACTGTGATCGTAAATTAGCAAACTTTAAAAATGACAATTGTGATCGTAAATCAACAAACTGT
TTAAGTG
Found at i:14370202 original size:27 final size:27
Alignment explanation
Indices: 14370164--14370604 Score: 464
Period size: 27 Copynumber: 16.3 Consensus size: 27
14370154 ATTCATGGGC
* *
14370164 AAATTACTGAAATACCCTTGAAGGGTA
1 AAATGACTGAAATACCCTCGAAGGGTA
*
14370191 AAATGACTGAAAAACCCTCGAAGGGTA
1 AAATGACTGAAATACCCTCGAAGGGTA
* *
14370218 AAATGACCT-AAATACCCTTGAAAGGTA
1 AAATGA-CTGAAATACCCTCGAAGGGTA
* **
14370245 GAATGACCAAAATACCCTCGAAGGGTA
1 AAATGACTGAAATACCCTCGAAGGGTA
**
14370272 AAATGA-TCGAAATACCCTTAAAGGGTA
1 AAATGACT-GAAATACCCTCGAAGGGTA
* *
14370299 AAATAACCGAAATACCCTCGAAGGGTA
1 AAATGACTGAAATACCCTCGAAGGGTA
** *
14370326 AAATGACCAAAATACCCTCGAAAGGTA
1 AAATGACTGAAATACCCTCGAAGGGTA
* **
14370353 AAATGACTGAAATACCTTTAAAGGGTA
1 AAATGACTGAAATACCCTCGAAGGGTA
* * *
14370380 AAATTA-TCAAAATACCCTCAAAGGGTA
1 AAATGACT-GAAATACCCTCGAAGGGTA
** *
14370407 AAATGACCAAAATACCCTCGAATGGTA
1 AAATGACTGAAATACCCTCGAAGGGTA
* *
14370434 AAATGACTCAAATACCCTCGAAGGATA
1 AAATGACTGAAATACCCTCGAAGGGTA
14370461 AAATGACT-AAAGTACCCTCGAAGGGTA
1 AAATGACTGAAA-TACCCTCGAAGGGTA
* * *
14370488 AAATGACCGAAGTATCCTCGAAGGGTA
1 AAATGACTGAAATACCCTCGAAGGGTA
* *
14370515 AAATGACCGAAATACCCTCGAAAGGTA
1 AAATGACTGAAATACCCTCGAAGGGTA
*
14370542 AAATGA-TCGAAATACCC-CTGAAGGTTA
1 AAATGACT-GAAATACCCTC-GAAGGGTA
* *
14370569 AAATGACTGAAATACCC-CTATAGGATA
1 AAATGACTGAAATACCCTCGA-AGGGTA
14370596 AAATGACTG
1 AAATGACTG
14370605 TTATAACCCT
Statistics
Matches: 350, Mismatches: 52, Indels: 24
0.82 0.12 0.06
Matches are distributed among these distances:
26 7 0.02
27 338 0.97
28 5 0.01
ACGTcount: A:0.44, C:0.19, G:0.18, T:0.20
Consensus pattern (27 bp):
AAATGACTGAAATACCCTCGAAGGGTA
Found at i:14376440 original size:81 final size:81
Alignment explanation
Indices: 14376298--14376584 Score: 337
Period size: 81 Copynumber: 3.5 Consensus size: 81
14376288 GATTCATGAG
* * * * * *
14376298 AAAATAACCGAAATACCCTTGAAGGGTAAAAAAACCAAAAAACCCTCGAAGGGTAAAATGACCAA
1 AAAATGACCGAAATACCCTCGAAGGGTAAAATAATCGAAATACCCTCGAAGGGTAAAATGACCAA
* *
14376363 AATAACTTCGAAAGGT
66 AATACCCTCGAAAGGT
** * * * *
14376379 AAAATGATTGAAATACCCTCGAAGGGTAAAATGATCGAAATACCCTCGAAGGTTAACATGACAAA
1 AAAATGACCGAAATACCCTCGAAGGGTAAAATAATCGAAATACCCTCGAAGGGTAAAATGACCAA
* *
14376444 AATTCCCTCGAAGGGT
66 AATACCCTCGAAAGGT
* *
14376460 AAAATGACCGAAATACTCT-GAAAGGGTAAAATAA-CTGAAATACCCTCAAAGGGTAAAATGACC
1 AAAATGACCGAAATACCCTCG-AAGGGTAAAATAATC-GAAATACCCTCGAAGGGTAAAATGACC
14376523 AAAATACCCTCG-AAGTGT
64 AAAATACCCTCGAAAG-GT
* * *
14376541 AAAATCACCAAAATACGCTCGAAGGGTAAAATAATCGAAATACC
1 AAAATGACCGAAATACCCTCGAAGGGTAAAATAATCGAAATACC
14376585 TTTATAGGGT
Statistics
Matches: 172, Mismatches: 29, Indels: 10
0.82 0.14 0.05
Matches are distributed among these distances:
80 4 0.02
81 166 0.97
82 2 0.01
ACGTcount: A:0.46, C:0.19, G:0.17, T:0.18
Consensus pattern (81 bp):
AAAATGACCGAAATACCCTCGAAGGGTAAAATAATCGAAATACCCTCGAAGGGTAAAATGACCAA
AATACCCTCGAAAGGT
Found at i:14376581 original size:27 final size:27
Alignment explanation
Indices: 14376298--14376584 Score: 297
Period size: 27 Copynumber: 10.6 Consensus size: 27
14376288 GATTCATGAG
* *
14376298 AAAATAACCGAAATACCCTTGAAGGGT
1 AAAATGACCGAAATACCCTCGAAGGGT
** * *
14376325 AAAAAAACCAAAAAACCCTCGAAGGGT
1 AAAATGACCGAAATACCCTCGAAGGGT
* * * *
14376352 AAAATGACCAAAATAACTTCGAAAGGT
1 AAAATGACCGAAATACCCTCGAAGGGT
**
14376379 AAAATGATTGAAATACCCTCGAAGGGT
1 AAAATGACCGAAATACCCTCGAAGGGT
* *
14376406 AAAATGATCGAAATACCCTCGAAGGTT
1 AAAATGACCGAAATACCCTCGAAGGGT
* ** *
14376433 AACATGACAAAAATTCCCTCGAAGGGT
1 AAAATGACCGAAATACCCTCGAAGGGT
*
14376460 AAAATGACCGAAATACTCT-GAAAGGGT
1 AAAATGACCGAAATACCCTCG-AAGGGT
* * *
14376487 AAAATAACTGAAATACCCTCAAAGGGT
1 AAAATGACCGAAATACCCTCGAAGGGT
* *
14376514 AAAATGACCAAAATACCCTCGAAGTGT
1 AAAATGACCGAAATACCCTCGAAGGGT
* * *
14376541 AAAATCACCAAAATACGCTCGAAGGGT
1 AAAATGACCGAAATACCCTCGAAGGGT
* *
14376568 AAAATAATCGAAATACC
1 AAAATGACCGAAATACC
14376585 TTTATAGGGT
Statistics
Matches: 213, Mismatches: 45, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
26 1 0.00
27 212 1.00
ACGTcount: A:0.46, C:0.19, G:0.17, T:0.18
Consensus pattern (27 bp):
AAAATGACCGAAATACCCTCGAAGGGT
Found at i:14387343 original size:17 final size:17
Alignment explanation
Indices: 14387320--14387363 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
14387310 GAAATTAGGG
14387320 AGTTAAATTTAGTTTAA
1 AGTTAAATTTAGTTTAA
*
14387337 GGTTAAATTTAGTTTAA
1 AGTTAAATTTAGTTTAA
*
14387354 AGTGAAATTT
1 AGTTAAATTT
14387364 GTATGAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (17 bp):
AGTTAAATTTAGTTTAA
Found at i:14391784 original size:38 final size:38
Alignment explanation
Indices: 14391733--14391810 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
14391723 TTGGCCAAGG
*
14391733 TTAATAATTGCATGTATTGGATCTTTGTAATGTATGTT
1 TTAATAATGGCATGTATTGGATCTTTGTAATGTATGTT
14391771 TTAATAATGGCATGTATTGGATCTTTGTAATGTATGTT
1 TTAATAATGGCATGTATTGGATCTTTGTAATGTATGTT
14391809 TT
1 TT
14391811 GGTATGTTTA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.26, C:0.05, G:0.19, T:0.50
Consensus pattern (38 bp):
TTAATAATGGCATGTATTGGATCTTTGTAATGTATGTT
Found at i:14395425 original size:21 final size:20
Alignment explanation
Indices: 14395401--14395445 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 20
14395391 GTCCTAATGC
14395401 AATAT-TAAAAATGCTAACTAA
1 AATATCTAAAAATGC-AAC-AA
14395422 AATATCCTAAAAATGCAACAA
1 AATAT-CTAAAAATGCAACAA
14395443 AAT
1 AAT
14395446 GTACTTAAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 10 0.45
22 3 0.14
23 9 0.41
ACGTcount: A:0.58, C:0.13, G:0.04, T:0.24
Consensus pattern (20 bp):
AATATCTAAAAATGCAACAA
Found at i:14396725 original size:12 final size:12
Alignment explanation
Indices: 14396708--14396733 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14396698 CGAGCCCAAA
14396708 CTAATTTTGGCT
1 CTAATTTTGGCT
14396720 CTAATTTTGGCT
1 CTAATTTTGGCT
14396732 CT
1 CT
14396734 TATTCCTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.19, G:0.15, T:0.50
Consensus pattern (12 bp):
CTAATTTTGGCT
Found at i:14405623 original size:13 final size:13
Alignment explanation
Indices: 14405605--14405629 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14405595 AAATTTAATT
14405605 AAAATGAATTTAG
1 AAAATGAATTTAG
14405618 AAAATGAATTTA
1 AAAATGAATTTA
14405630 CTAATCAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.12, T:0.32
Consensus pattern (13 bp):
AAAATGAATTTAG
Found at i:14407646 original size:17 final size:17
Alignment explanation
Indices: 14407624--14407666 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
14407614 TTTTGATATA
14407624 CATATCTTTCTGACACC
1 CATATCTTTCTGACACC
*
14407641 CATATCTTTCTGATACC
1 CATATCTTTCTGACACC
14407658 CATATCTTT
1 CATATCTTT
14407667 GACTTTTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.23, C:0.30, G:0.05, T:0.42
Consensus pattern (17 bp):
CATATCTTTCTGACACC
Found at i:14411186 original size:17 final size:17
Alignment explanation
Indices: 14411164--14411196 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
14411154 TCTCAGATTT
14411164 TGATACCCATATCTTTC
1 TGATACCCATATCTTTC
*
14411181 TGATACCTATATCTTT
1 TGATACCCATATCTTT
14411197 GACTTTCTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.24, G:0.06, T:0.45
Consensus pattern (17 bp):
TGATACCCATATCTTTC
Found at i:14414971 original size:17 final size:17
Alignment explanation
Indices: 14414949--14414995 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
14414939 AAAATGTATT
*
14414949 TTAAAAATATTTTAAAA
1 TTAAAAATATTTAAAAA
*
14414966 TTAAAAAAATTTAAAAA
1 TTAAAAATATTTAAAAA
* *
14414983 ATAAATATATTTA
1 TTAAAAATATTTA
14414996 TTATATCGGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TTAAAAATATTTAAAAA
Found at i:14415316 original size:18 final size:18
Alignment explanation
Indices: 14415285--14415331 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
14415275 CAAAATTTTA
*
14415285 AAATAATTTTTAAAATTCC
1 AAAT-ATTTATAAAATTCC
14415304 AAATATTTATAAAATTCC
1 AAATATTTATAAAATTCC
14415322 AAA-ATTTATA
1 AAATATTTATA
14415332 TTTTTAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 7 0.26
18 16 0.59
19 4 0.15
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (18 bp):
AAATATTTATAAAATTCC
Found at i:14415359 original size:17 final size:17
Alignment explanation
Indices: 14415295--14415360 Score: 62
Period size: 17 Copynumber: 3.9 Consensus size: 17
14415285 AAATAATTTT
*
14415295 TAAAATTCCAAATATTTA
1 TAAAATTCCAAA-AATTA
*
14415313 TAAAATTCCAAAATTTA
1 TAAAATTCCAAAAATTA
** **
14415330 T-ATTTTTAAAAAATTA
1 TAAAATTCCAAAAATTA
14415346 TAAAATTCCAAAAAT
1 TAAAATTCCAAAAAT
14415361 AAATTAAAAA
Statistics
Matches: 38, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
16 11 0.29
17 15 0.39
18 12 0.32
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (17 bp):
TAAAATTCCAAAAATTA
Found at i:14416967 original size:43 final size:42
Alignment explanation
Indices: 14416906--14417070 Score: 174
Period size: 43 Copynumber: 3.9 Consensus size: 42
14416896 ATTTTCGATG
*
14416906 TGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCAATT
1 TGTGTTTACGTGTAAGACCACGTCTGGGACGTTGGCATC-ATT
* * *
14416949 TGTGTTTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAT
1 TGTGTTTACGTGTAAGACCACGTCTGGGACGTTGGCATCAT-T
* ** * *
14416992 T-TATTT-CGTGTAAGACCTTGTTTGGGACAG-TGGCATCGATA
1 TGTGTTTACGTGTAAGACCACGTCTGGGAC-GTTGGCATC-ATT
* *
14417033 TGTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTGTTTACGTGTAAGACCACGTCTGGGACGTTGGCAT
14417071 TGTACGAGCC
Statistics
Matches: 100, Mismatches: 16, Indels: 12
0.78 0.12 0.09
Matches are distributed among these distances:
41 28 0.28
42 10 0.10
43 62 0.62
ACGTcount: A:0.21, C:0.17, G:0.28, T:0.34
Consensus pattern (42 bp):
TGTGTTTACGTGTAAGACCACGTCTGGGACGTTGGCATCATT
Found at i:14417052 original size:84 final size:84
Alignment explanation
Indices: 14416911--14417070 Score: 223
Period size: 84 Copynumber: 1.9 Consensus size: 84
14416901 CGATGTGTGT
* * * *
14416911 TTTCGTGTAAGACCACGTCTGGGACGTTGGCATCAATTTGTGTTTACGTGTAAGACCATGTCTGG
1 TTTCGTGTAAGACCACGTCTGGGACGTTGGCATCAATATGTGATTACATGTAAGACCACGTCTGG
14416976 GACATTGGCATCGTATTTA
66 GACATTGGCATCGTATTTA
** * *
14416995 TTTCGTGTAAGACCTTGTTTGGGACAG-TGGCATCGATATGTGATTACATGTAAGACCACGTCTG
1 TTTCGTGTAAGACCACGTCTGGGAC-GTTGGCATCAATATGTGATTACATGTAAGACCACGTCTG
*
14417059 GGACGTTGGCAT
65 GGACATTGGCAT
14417071 TGTACGAGCC
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
84 65 0.98
85 1 0.02
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.33
Consensus pattern (84 bp):
TTTCGTGTAAGACCACGTCTGGGACGTTGGCATCAATATGTGATTACATGTAAGACCACGTCTGG
GACATTGGCATCGTATTTA
Found at i:14422835 original size:22 final size:22
Alignment explanation
Indices: 14422810--14422854 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
14422800 ATTCTTGTAA
14422810 TTCTTGGAGTTGAAGTAATCTT
1 TTCTTGGAGTTGAAGTAATCTT
14422832 TTCTTGGAGTTGAAGTAATCTT
1 TTCTTGGAGTTGAAGTAATCTT
14422854 T
1 T
14422855 CTTTCTTCGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.22, C:0.09, G:0.22, T:0.47
Consensus pattern (22 bp):
TTCTTGGAGTTGAAGTAATCTT
Found at i:14440868 original size:65 final size:65
Alignment explanation
Indices: 14440764--14440895 Score: 246
Period size: 65 Copynumber: 2.0 Consensus size: 65
14440754 TCAGGCTGTT
*
14440764 AGATTGCACGGTGTGCCAGTTTTTATTTTTTCGATAGATATCTGTGATTTACGTCTCGATTCTGG
1 AGATTGCACGGTGTGCCAGTTTTTATTTTTTCGATAGATATCTGTGATTTACGTCTCAATTCTGG
*
14440829 AGATTGTACGGTGTGCCAGTTTTTATTTTTTCGATAGATATCTGTGATTTACGTCTCAATTCTGG
1 AGATTGCACGGTGTGCCAGTTTTTATTTTTTCGATAGATATCTGTGATTTACGTCTCAATTCTGG
14440894 AG
1 AG
14440896 CAAGTTACAT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.20, C:0.14, G:0.23, T:0.43
Consensus pattern (65 bp):
AGATTGCACGGTGTGCCAGTTTTTATTTTTTCGATAGATATCTGTGATTTACGTCTCAATTCTGG
Found at i:14442164 original size:28 final size:28
Alignment explanation
Indices: 14442124--14442178 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
14442114 TTATTTCCTT
14442124 CTTCAATCGAAATTATCAAAAAACCATA
1 CTTCAATCGAAATTATCAAAAAACCATA
14442152 CTTCAATCGAAATTATCAAAAAACCAT
1 CTTCAATCGAAATTATCAAAAAACCAT
14442179 TGCTAGGGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.49, C:0.22, G:0.04, T:0.25
Consensus pattern (28 bp):
CTTCAATCGAAATTATCAAAAAACCATA
Found at i:14443918 original size:15 final size:15
Alignment explanation
Indices: 14443895--14443925 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
14443885 TAGTAATTTC
14443895 CATTCAATTCAATAT
1 CATTCAATTCAATAT
*
14443910 CATTTAATTCAATAT
1 CATTCAATTCAATAT
14443925 C
1 C
14443926 GATATTCACC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.19, G:0.00, T:0.42
Consensus pattern (15 bp):
CATTCAATTCAATAT
Found at i:14444740 original size:16 final size:18
Alignment explanation
Indices: 14444719--14444751 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14444709 GTTCTTTTTC
14444719 TGTC-TTTA-TTTCATTG
1 TGTCTTTTATTTTCATTG
14444735 TGTCTTTTATTTTCATT
1 TGTCTTTTATTTTCATT
14444752 TCTTTCTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 4 0.27
18 7 0.47
ACGTcount: A:0.12, C:0.12, G:0.09, T:0.67
Consensus pattern (18 bp):
TGTCTTTTATTTTCATTG
Found at i:14444842 original size:22 final size:23
Alignment explanation
Indices: 14444814--14444857 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
14444804 ATTAATAATT
14444814 ATGTAT-ATATATTAATTACAAA
1 ATGTATAATATATTAATTACAAA
*
14444836 ATGTATACATATATTTATTACA
1 ATGTATA-ATATATTAATTACA
14444858 CATGTATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
24 13 0.68
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.43
Consensus pattern (23 bp):
ATGTATAATATATTAATTACAAA
Found at i:14445552 original size:6 final size:6
Alignment explanation
Indices: 14445541--14445580 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
14445531 GCTACAATGT
* *
14445541 AAAGGA AAAGGA AATGGA AAAGGA AATGGA AAAGGA AAAG
1 AAAGGA AAAGGA AAAGGA AAAGGA AAAGGA AAAGGA AAAG
14445581 TTACAACTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.62, C:0.00, G:0.33, T:0.05
Consensus pattern (6 bp):
AAAGGA
Found at i:14445559 original size:12 final size:12
Alignment explanation
Indices: 14445544--14445578 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
14445534 ACAATGTAAA
14445544 GGAAAAGGAAAT
1 GGAAAAGGAAAT
14445556 GGAAAAGGAAAT
1 GGAAAAGGAAAT
14445568 GGAAAAGGAAA
1 GGAAAAGGAAA
14445579 AGTTACAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.60, C:0.00, G:0.34, T:0.06
Consensus pattern (12 bp):
GGAAAAGGAAAT
Found at i:14448059 original size:44 final size:44
Alignment explanation
Indices: 14448001--14448176 Score: 352
Period size: 44 Copynumber: 4.0 Consensus size: 44
14447991 TTGAGGAAAT
14448001 GAGATATTTCCTTAGGATGAAAGTGCGACAATTTCATGAAGGAA
1 GAGATATTTCCTTAGGATGAAAGTGCGACAATTTCATGAAGGAA
14448045 GAGATATTTCCTTAGGATGAAAGTGCGACAATTTCATGAAGGAA
1 GAGATATTTCCTTAGGATGAAAGTGCGACAATTTCATGAAGGAA
14448089 GAGATATTTCCTTAGGATGAAAGTGCGACAATTTCATGAAGGAA
1 GAGATATTTCCTTAGGATGAAAGTGCGACAATTTCATGAAGGAA
14448133 GAGATATTTCCTTAGGATGAAAGTGCGACAATTTCATGAAGGAA
1 GAGATATTTCCTTAGGATGAAAGTGCGACAATTTCATGAAGGAA
14448177 TTTTCATAAG
Statistics
Matches: 132, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 132 1.00
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.27
Consensus pattern (44 bp):
GAGATATTTCCTTAGGATGAAAGTGCGACAATTTCATGAAGGAA
Found at i:14458148 original size:18 final size:18
Alignment explanation
Indices: 14458105--14458150 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
14458095 AGATCACTTC
*
14458105 AAATTATAAAAATTTTAT
1 AAATTATAAAAATATTAT
*
14458123 AAAATATAAAAATATTA-
1 AAATTATAAAAATATTAT
14458140 AATATTATAAA
1 AA-ATTATAAA
14458151 GCATTATTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 2 0.08
18 22 0.92
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
AAATTATAAAAATATTAT
Found at i:14458455 original size:13 final size:13
Alignment explanation
Indices: 14458437--14458464 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
14458427 TAGTTGAATG
14458437 ATGATTCAACCAA
1 ATGATTCAACCAA
14458450 ATGATTCAACCAA
1 ATGATTCAACCAA
14458463 AT
1 AT
14458465 TATGTAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.21, G:0.07, T:0.25
Consensus pattern (13 bp):
ATGATTCAACCAA
Found at i:14458921 original size:18 final size:18
Alignment explanation
Indices: 14458900--14458958 Score: 50
Period size: 18 Copynumber: 3.3 Consensus size: 18
14458890 TTAGCGAACA
*
14458900 AAATAGATAAATATAAAT
1 AAATAAATAAATATAAAT
** *
14458918 AAATAAATATTTATATAT
1 AAATAAATAAATATAAAT
*
14458936 AAA-ATA-AAATATAAAT
1 AAATAAATAAATATAAAT
14458952 AGAATAA
1 A-AATAA
14458959 TTTATATTTC
Statistics
Matches: 30, Mismatches: 9, Indels: 4
0.70 0.21 0.09
Matches are distributed among these distances:
16 8 0.27
17 4 0.13
18 18 0.60
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (18 bp):
AAATAAATAAATATAAAT
Found at i:14463353 original size:6 final size:6
Alignment explanation
Indices: 14463335--14463411 Score: 57
Period size: 6 Copynumber: 12.0 Consensus size: 6
14463325 ACGTTCCTTC
* *
14463335 TTCTTT TT-ATT TTCTTT TTCTTT TTCTTAT TTCTCCT TTCTTT TTCAATTCCT
1 TTCTTT TTCTTT TTCTTT TTCTTT TTCTT-T TTCT-TT TTCTTT TTC--TT--T
* *
14463388 TTGTTT TTCTTT TCCTTT TTCTTT
1 TTCTTT TTCTTT TTCTTT TTCTTT
14463412 CGATTTGCTT
Statistics
Matches: 56, Mismatches: 8, Indels: 14
0.72 0.10 0.18
Matches are distributed among these distances:
5 4 0.07
6 35 0.62
7 10 0.18
8 4 0.07
10 3 0.05
ACGTcount: A:0.05, C:0.19, G:0.01, T:0.74
Consensus pattern (6 bp):
TTCTTT
Found at i:14463402 original size:16 final size:15
Alignment explanation
Indices: 14463339--14463412 Score: 58
Period size: 16 Copynumber: 4.6 Consensus size: 15
14463329 TCCTTCTTCT
*
14463339 TTTTATTTTCTTTTTC
1 TTTT-TTTTCTTTTCC
* *
14463355 TTTTTCTTATTTCTCC
1 TTTTTTTTCTTT-TCC
**
14463371 TTTCTTTTTCAATTCC
1 TTT-TTTTTCTTTTCC
14463387 TTTGTTTTTCTTTTCC
1 TTT-TTTTTCTTTTCC
14463403 TTTTTCTTTC
1 TTTTT-TTTC
14463413 GATTTGCTTC
Statistics
Matches: 45, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
15 8 0.18
16 32 0.71
17 5 0.11
ACGTcount: A:0.05, C:0.20, G:0.01, T:0.73
Consensus pattern (15 bp):
TTTTTTTTCTTTTCC
Found at i:14475430 original size:21 final size:21
Alignment explanation
Indices: 14475404--14475443 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
14475394 GTATATCGAG
14475404 GAAAAATATAATTATTTTATA
1 GAAAAATATAATTATTTTATA
14475425 GAAAAATATAATTATTTTA
1 GAAAAATATAATTATTTTA
14475444 GTAATTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (21 bp):
GAAAAATATAATTATTTTATA
Found at i:14477463 original size:61 final size:60
Alignment explanation
Indices: 14477363--14477550 Score: 187
Period size: 61 Copynumber: 3.1 Consensus size: 60
14477353 AAATAAATGC
* * * * *
14477363 GATGATAAAGAGTGTTTATGGTTTAATAATTGTGAGGTTTAGGGTTTGGTTTTAAGGATAAG
1 GATGATAAAAAG-GTTTATGGTTTAATGATT-TGGGGTTTAGGGTTTGATTTTAAGGTTAAG
* * * * * *
14477425 GATGATAAAAAGGTTTATGGTTCAATGGTTTAGGGGTTTAAGGATTGATTTTAGGGTTAAA
1 GATGATAAAAAGGTTTATGGTTTAATGATTT-GGGGTTTAGGGTTTGATTTTAAGGTTAAG
* * * * * *
14477486 GATTATAATATGGTTTAAGGTTTAATGATTTGGAGGTTTAGAGTTTGATTTCAAGGTTAAG
1 GATGATAAAAAGGTTTATGGTTTAATGATTTGG-GGTTTAGGGTTTGATTTTAAGGTTAAG
14477547 GATG
1 GATG
14477551 GTATGTAACA
Statistics
Matches: 100, Mismatches: 24, Indels: 5
0.78 0.19 0.04
Matches are distributed among these distances:
60 3 0.03
61 86 0.86
62 11 0.11
ACGTcount: A:0.30, C:0.01, G:0.29, T:0.40
Consensus pattern (60 bp):
GATGATAAAAAGGTTTATGGTTTAATGATTTGGGGTTTAGGGTTTGATTTTAAGGTTAAG
Found at i:14483423 original size:17 final size:18
Alignment explanation
Indices: 14483383--14483424 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
14483373 CTGGTGACAC
14483383 CATACTTAGTAAAGGATTT
1 CATA-TTAGTAAAGGATTT
* *
14483402 AATATTAGTAGA-GATTT
1 CATATTAGTAAAGGATTT
14483419 CATATT
1 CATATT
14483425 TTAAATTAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 10 0.50
18 7 0.35
19 3 0.15
ACGTcount: A:0.38, C:0.07, G:0.14, T:0.40
Consensus pattern (18 bp):
CATATTAGTAAAGGATTT
Found at i:14486932 original size:19 final size:19
Alignment explanation
Indices: 14486907--14486951 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
14486897 AACTTTATAG
14486907 AATATTTTTTATT-TTTTT
1 AATATTTTTTATTATTTTT
14486925 ACATA-TTTTTATTAATTTTT
1 A-ATATTTTTTATT-ATTTTT
14486945 AATATTT
1 AATATTT
14486952 ATTAATATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
18 9 0.39
19 6 0.26
20 8 0.35
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (19 bp):
AATATTTTTTATTATTTTT
Found at i:14486956 original size:10 final size:9
Alignment explanation
Indices: 14486907--14486959 Score: 52
Period size: 10 Copynumber: 5.6 Consensus size: 9
14486897 AACTTTATAG
14486907 AATATTTTT
1 AATATTTTT
* *
14486916 TATTTTTTT
1 AATATTTTT
14486925 ACATATTTTT
1 A-ATATTTTT
*
14486935 ATTAATTTTT
1 AAT-ATTTTT
14486945 AATATTTATT
1 AATATTT-TT
14486955 AATAT
1 AATAT
14486960 GACATGTAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
9 12 0.34
10 23 0.66
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (9 bp):
AATATTTTT
Found at i:14490090 original size:2 final size:2
Alignment explanation
Indices: 14490083--14490114 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
14490073 AAGAAAATTA
14490083 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14490115 GCCAACTACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14491150 original size:14 final size:15
Alignment explanation
Indices: 14491116--14491145 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14491106 ATATAATTTT
*
14491116 AAAATTTTTAAAAGA
1 AAAATCTTTAAAAGA
14491131 AAAATCTTTAAAAGA
1 AAAATCTTTAAAAGA
14491146 TAATCAGGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.30
Consensus pattern (15 bp):
AAAATCTTTAAAAGA
Found at i:14495086 original size:25 final size:25
Alignment explanation
Indices: 14495047--14495122 Score: 91
Period size: 25 Copynumber: 3.0 Consensus size: 25
14495037 AAACAAACAA
* *
14495047 TATATAGAATGCGCCATAAGGC-CT
1 TATATAGAATACGCCATAAGGCAAT
*
14495071 TATTATAGAATACGCCACAAAGGCAAT
1 TA-TATAGAATACGCCA-TAAGGCAAT
*
14495098 TATATAGAATTCGCCATAAGGCAAT
1 TATATAGAATACGCCATAAGGCAAT
14495123 CCATTCAGAG
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
24 2 0.05
25 21 0.48
26 18 0.41
27 3 0.07
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.25
Consensus pattern (25 bp):
TATATAGAATACGCCATAAGGCAAT
Found at i:14495171 original size:27 final size:27
Alignment explanation
Indices: 14495111--14495173 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
14495101 ATAGAATTCG
* **
14495111 CCAT-AAGGCAATCCATTCAGAGTATG
1 CCATAAAGGCAATCCATTCAAAGTACA
* *
14495137 CCACAAAGGCAATTCATTCAAAGTACA
1 CCATAAAGGCAATCCATTCAAAGTACA
14495164 CCATAAAGGC
1 CCATAAAGGC
14495174 TCACATGATG
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 3 0.10
27 27 0.90
ACGTcount: A:0.40, C:0.25, G:0.16, T:0.19
Consensus pattern (27 bp):
CCATAAAGGCAATCCATTCAAAGTACA
Found at i:14504477 original size:25 final size:25
Alignment explanation
Indices: 14504444--14504508 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
14504434 AAAGGACATT
14504444 AAATTAAAATAAATATATATAATAA
1 AAATTAAAATAAATATATATAATAA
* *
14504469 AAATTAAAA-AATATATGTATATTAA
1 AAATTAAAATAA-ATATATATAATAA
* *
14504494 ATACTAAATATAAAT
1 AAATTAAA-ATAAAT
14504509 TAAATTTATA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
24 2 0.06
25 26 0.79
26 3 0.09
27 2 0.06
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.34
Consensus pattern (25 bp):
AAATTAAAATAAATATATATAATAA
Found at i:14504495 original size:23 final size:24
Alignment explanation
Indices: 14504441--14504495 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 24
14504431 TATAAAGGAC
14504441 ATTAAATTAAAATAAATATATATA
1 ATTAAATTAAAATAAATATATATA
* *
14504465 ATAAAAATT-AAA-AAATATATGTA
1 AT-TAAATTAAAATAAATATATATA
14504488 TATTAAAT
1 -ATTAAAT
14504496 ACTAAATATA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
23 14 0.54
24 7 0.27
25 5 0.19
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (24 bp):
ATTAAATTAAAATAAATATATATA
Found at i:14512582 original size:25 final size:25
Alignment explanation
Indices: 14512554--14512654 Score: 122
Period size: 23 Copynumber: 4.2 Consensus size: 25
14512544 AATGTGTTAT
*
14512554 AATATACGCCACAAAGGCGTTATAG
1 AATATACGCCACAAAGGCGTTACAG
*
14512579 AATACAC-CACACAAAGGCGTTAC--
1 AATATACGC-CACAAAGGCGTTACAG
*
14512602 AATATACGCCACAAAGGTGTTACA-
1 AATATACGCCACAAAGGCGTTACAG
*
14512626 AA-ATACGTCACAAAGGCGTTACAG
1 AATATACGCCACAAAGGCGTTACAG
14512650 AATAT
1 AATAT
14512655 GACACAAAGG
Statistics
Matches: 65, Mismatches: 6, Indels: 10
0.80 0.07 0.12
Matches are distributed among these distances:
23 38 0.58
24 6 0.09
25 21 0.32
ACGTcount: A:0.43, C:0.22, G:0.17, T:0.19
Consensus pattern (25 bp):
AATATACGCCACAAAGGCGTTACAG
Found at i:14512654 original size:48 final size:48
Alignment explanation
Indices: 14512549--14512648 Score: 132
Period size: 48 Copynumber: 2.1 Consensus size: 48
14512539 ACGCAAATGT
* *
14512549 GTTATAATATACGCCACAAAGGCGTTATAGAATACACCACACAAAGGC
1 GTTACAATATACGCCACAAAGGCGTTACAGAATACACCACACAAAGGC
* * **
14512597 GTTACAATATACGCCACAAAGGTGTTACA-AA-ATACGTCACAAAGGC
1 GTTACAATATACGCCACAAAGGCGTTACAGAATACACCACACAAAGGC
14512643 GTTACA
1 GTTACA
14512649 GAATATGACA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
46 18 0.39
47 2 0.04
48 26 0.57
ACGTcount: A:0.41, C:0.22, G:0.17, T:0.20
Consensus pattern (48 bp):
GTTACAATATACGCCACAAAGGCGTTACAGAATACACCACACAAAGGC
Found at i:14518270 original size:13 final size:13
Alignment explanation
Indices: 14518248--14518277 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
14518238 ATGAATATGA
*
14518248 TTTTTGTTTTTTT
1 TTTTTATTTTTTT
14518261 TTTTTATTTTTTT
1 TTTTTATTTTTTT
14518274 TTTT
1 TTTT
14518278 GGAATTCAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.03, C:0.00, G:0.03, T:0.93
Consensus pattern (13 bp):
TTTTTATTTTTTT
Found at i:14523181 original size:19 final size:19
Alignment explanation
Indices: 14523134--14523210 Score: 100
Period size: 19 Copynumber: 3.8 Consensus size: 19
14523124 AAACTAAATC
*
14523134 TCTAAGATTACAAAATCATA
1 TCTAAGATTAC-ATATCATA
14523154 TCTTCTAAGATTACATATCATA
1 ---TCTAAGATTACATATCATA
14523176 TCTAAGATTACATATCATA
1 TCTAAGATTACATATCATA
*
14523195 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
14523211 CTTGAAGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
19 34 0.65
22 7 0.13
23 11 0.21
ACGTcount: A:0.40, C:0.17, G:0.06, T:0.36
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:14524496 original size:18 final size:18
Alignment explanation
Indices: 14524478--14524520 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 18
14524468 ATTAAATTAA
*
14524478 TCGATTAAATTGATCTAAT
1 TCGATT-AATCGATCTAAT
14524497 TCGATTAATCGATCTAAT
1 TCGATTAATCGATCTAAT
14524515 TCGATT
1 TCGATT
14524521 GAAGGTCCGT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 17 0.74
19 6 0.26
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.42
Consensus pattern (18 bp):
TCGATTAATCGATCTAAT
Found at i:14525464 original size:2 final size:2
Alignment explanation
Indices: 14525457--14525491 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
14525447 CTTTCACTGC
14525457 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14525492 TCCTATTGGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:14534483 original size:79 final size:80
Alignment explanation
Indices: 14534386--14534553 Score: 286
Period size: 79 Copynumber: 2.1 Consensus size: 80
14534376 TTTACCAATT
* *
14534386 AATATT-AATTTTCATGATTTGAAAATAAAATTTGACAAGAATACTTTACTTTAGTAATTAACTA
1 AATATTAAAATTTCATGATTTGAAAATAAAATTTGACAAGAATACTTTACTTTAGTAATTAACAA
**
14534450 TATTTTAATTTAT-A
66 TAAATTAATTTATAA
14534464 AATATTAAAATTTCATGATTTGAAAATAAAATTTGACAAGAATACTTTACTTTAGTAATTAACAA
1 AATATTAAAATTTCATGATTTGAAAATAAAATTTGACAAGAATACTTTACTTTAGTAATTAACAA
14534529 TAAATTAATTTATAA
66 TAAATTAATTTATAA
14534544 AATATTAAAA
1 AATATTAAAA
14534554 GAATTTTTGT
Statistics
Matches: 84, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
78 6 0.07
79 67 0.80
80 11 0.13
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (80 bp):
AATATTAAAATTTCATGATTTGAAAATAAAATTTGACAAGAATACTTTACTTTAGTAATTAACAA
TAAATTAATTTATAA
Found at i:14535815 original size:28 final size:29
Alignment explanation
Indices: 14535770--14535837 Score: 86
Period size: 28 Copynumber: 2.4 Consensus size: 29
14535760 TGGAAGACTT
14535770 ATTGATTTTTT-TATTTTACAAGGATTTA
1 ATTGATTTTTTATATTTTACAAGGATTTA
* * *
14535798 ATT-ATTTTTTATTTTTTACGAGGGTTTA
1 ATTGATTTTTTATATTTTACAAGGATTTA
*
14535826 ATTGATTATTTA
1 ATTGATTTTTTA
14535838 AGTACAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
27 7 0.21
28 20 0.59
29 7 0.21
ACGTcount: A:0.26, C:0.03, G:0.12, T:0.59
Consensus pattern (29 bp):
ATTGATTTTTTATATTTTACAAGGATTTA
Found at i:14535917 original size:9 final size:9
Alignment explanation
Indices: 14535903--14536017 Score: 63
Period size: 10 Copynumber: 12.0 Consensus size: 9
14535893 TAAAAAATTT
14535903 ATTATAAAA
1 ATTATAAAA
14535912 ATTATACAAA
1 ATTATA-AAA
14535922 A-TATTAAAA
1 ATTA-TAAAA
* **
14535931 GTTATAAGT
1 ATTATAAAA
* *
14535940 TTTTTAAGAA
1 ATTATAA-AA
*
14535950 AATATAAAAA
1 ATTAT-AAAA
*
14535960 ATTATTAAA
1 ATTATAAAA
14535969 ATTATTAAAA
1 ATTA-TAAAA
14535979 TATTATAATAA
1 -ATTATAA-AA
*
14535990 ATTAAAGAAA
1 ATTATA-AAA
14536000 TATTATAAAA
1 -ATTATAAAA
14536010 ATTA-AAAA
1 ATTATAAAA
14536018 TTACTAGACA
Statistics
Matches: 81, Mismatches: 15, Indels: 21
0.69 0.13 0.18
Matches are distributed among these distances:
8 4 0.05
9 30 0.37
10 33 0.41
11 14 0.17
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.36
Consensus pattern (9 bp):
ATTATAAAA
Found at i:14535926 original size:21 final size:20
Alignment explanation
Indices: 14535902--14536017 Score: 84
Period size: 19 Copynumber: 6.0 Consensus size: 20
14535892 ATAAAAAATT
14535902 TATTATAAAAATTATACAAAA
1 TATTATAAAAATTATA-AAAA
* *
14535923 TA-T-TAAAAGTTAT--AAG
1 TATTATAAAAATTATAAAAA
* * *
14535939 TTTTTTAAGAAAATATAAAAA
1 TATTATAA-AAATTATAAAAA
* *
14535960 -ATTATTAAAATTATTAAAA
1 TATTATAAAAATTATAAAAA
14535979 TATTATAATAAATTA-AAGAAA
1 TATTATAA-AAATTATAA-AAA
14536000 TATTATAAAAATTA-AAAA
1 TATTATAAAAATTATAAAA
14536018 TTACTAGACA
Statistics
Matches: 74, Mismatches: 13, Indels: 18
0.70 0.12 0.17
Matches are distributed among these distances:
16 3 0.04
17 1 0.01
18 3 0.04
19 26 0.35
20 20 0.27
21 21 0.28
ACGTcount: A:0.59, C:0.01, G:0.03, T:0.36
Consensus pattern (20 bp):
TATTATAAAAATTATAAAAA
Found at i:14536014 original size:20 final size:21
Alignment explanation
Indices: 14535976--14536015 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
14535966 AAAATTATTA
14535976 AAATATTATAATAAATTAAAG
1 AAATATTATAATAAATTAAAG
14535997 AAATATTATAA-AAATTAAA
1 AAATATTATAATAAATTAAA
14536016 AATTACTAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.33
Consensus pattern (21 bp):
AAATATTATAATAAATTAAAG
Found at i:14542202 original size:23 final size:23
Alignment explanation
Indices: 14542171--14542214 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
14542161 TGAGGTACCT
*
14542171 GATACGACATATAAAGTGCCTGA
1 GATACGACACATAAAGTGCCTGA
*
14542194 GATATGACACATAAAGTGCCT
1 GATACGACACATAAAGTGCCT
14542215 AATTGGCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.23
Consensus pattern (23 bp):
GATACGACACATAAAGTGCCTGA
Found at i:14543694 original size:17 final size:17
Alignment explanation
Indices: 14543672--14543718 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
14543662 GAATGGTCTC
*
14543672 TGTTTCATTTCTTCTTT
1 TGTTTCATTTATTCTTT
*
14543689 TGTTTCTTTTATTCTTT
1 TGTTTCATTTATTCTTT
* *
14543706 TATTTTATTTATT
1 TGTTTCATTTATT
14543719 TTATGTATTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.11, C:0.11, G:0.04, T:0.74
Consensus pattern (17 bp):
TGTTTCATTTATTCTTT
Found at i:14544132 original size:30 final size:27
Alignment explanation
Indices: 14544096--14544160 Score: 76
Period size: 30 Copynumber: 2.3 Consensus size: 27
14544086 TTTCCTATAA
*
14544096 TATAATATCTTAACTTTAATTAATATAATT
1 TATAATATCTTAA--TTAAATAATAT-ATT
* *
14544126 TATAATATTTTAATTAAATAATATTTT
1 TATAATATCTTAATTAAATAATATATT
14544153 TATAATAT
1 TATAATAT
14544161 AAATCAAGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 10 0.31
28 10 0.31
30 12 0.38
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (27 bp):
TATAATATCTTAATTAAATAATATATT
Found at i:14544162 original size:16 final size:17
Alignment explanation
Indices: 14544126--14544162 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
14544116 TAATATAATT
14544126 TATAATATTTTAATTAA
1 TATAATATTTTAATTAA
*
14544143 -ATAATATTTTTA-TAA
1 TATAATATTTTAATTAA
14544158 TATAA
1 TATAA
14544163 ATCAAGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 3 0.17
16 15 0.83
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TATAATATTTTAATTAA
Found at i:14547516 original size:302 final size:303
Alignment explanation
Indices: 14546970--14547575 Score: 1196
Period size: 302 Copynumber: 2.0 Consensus size: 303
14546960 ACTGTTTCTT
14546970 TGGTGGAAGAAGAATTTAAAATAAAAAGGTTTATTGCCGCTCATTATTTCAAATGTAGACAGAAT
1 TGGTGGAAGAAGAATTTAAAATAAAAAGGTTTATTGCCGCTCATTATTTCAAATGTAGACAGAAT
14547035 TTGTTTTATACAACCATTTTACTTGGTATTGTCTGAAAAAAAGAAATAGTTATTTAATGGTTTAC
66 TTGTTTTATACAACCATTTTACTTGGTATTGTCTGAAAAAAAGAAATAGTTATTTAATGGTTTAC
14547100 TTTAAAAACAAATACTTTTCTCCTACCATCATTTGGTGATTGGCTGATCTAAAGGCTAAAGGGAA
131 TTTAAAAACAAATACTTTTCTCCTACCATCATTTGGTGATTGGCTGATCTAAAGGCTAAAGGGAA
14547165 AAGCATTATTGATAAAAAGGGAGTTTTGATGTGATTTATCCTACTGTAAACAGAGGTGAATCTAG
196 AAGCATTATTGATAAAAAGGGAGTTTTGATGTGATTTATCCTACTGTAAACAGAGGTGAATCTAG
14547230 AGGCCGGCAGGTGCTGGCCTCATAAAATAG-AATTATTATTTA
261 AGGCCGGCAGGTGCTGGCCTCATAAAATAGAAATTATTATTTA
14547272 TGGTGGAAGAAGAATTTAAAATAAAAAGGTTTATTGCCGCTCATTATTTCAAATGTAGACAGAAT
1 TGGTGGAAGAAGAATTTAAAATAAAAAGGTTTATTGCCGCTCATTATTTCAAATGTAGACAGAAT
14547337 TTGTTTTATACAACCATTTTACTTGGTATTGTCTGAAAAAAAGAAATAGTTATTTAATGGTTTAC
66 TTGTTTTATACAACCATTTTACTTGGTATTGTCTGAAAAAAAGAAATAGTTATTTAATGGTTTAC
14547402 TTTAAAAACAAATACTTTTCTCCTACCATCATTTGGTGATTGGCTGATCTAAAGGCTAAAGGGAA
131 TTTAAAAACAAATACTTTTCTCCTACCATCATTTGGTGATTGGCTGATCTAAAGGCTAAAGGGAA
14547467 AAGCATTATTGATAAAAAGGGAGTTTTGATGTGATTTATCCTACTGTAAACAGAGGTGAATCTAG
196 AAGCATTATTGATAAAAAGGGAGTTTTGATGTGATTTATCCTACTGTAAACAGAGGTGAATCTAG
14547532 AGGCCGGCAGGTGCTGGCCTCATAAAATAGAAAATTATTATTTA
261 AGGCCGGCAGGTGCTGGCCTCATAAAATAG-AAATTATTATTTA
14547576 AATTATTTAA
Statistics
Matches: 302, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
302 290 0.96
304 12 0.04
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.34
Consensus pattern (303 bp):
TGGTGGAAGAAGAATTTAAAATAAAAAGGTTTATTGCCGCTCATTATTTCAAATGTAGACAGAAT
TTGTTTTATACAACCATTTTACTTGGTATTGTCTGAAAAAAAGAAATAGTTATTTAATGGTTTAC
TTTAAAAACAAATACTTTTCTCCTACCATCATTTGGTGATTGGCTGATCTAAAGGCTAAAGGGAA
AAGCATTATTGATAAAAAGGGAGTTTTGATGTGATTTATCCTACTGTAAACAGAGGTGAATCTAG
AGGCCGGCAGGTGCTGGCCTCATAAAATAGAAATTATTATTTA
Found at i:14549731 original size:16 final size:16
Alignment explanation
Indices: 14549700--14549736 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
14549690 ATGTGAAGAA
14549700 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
14549716 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
14549732 TATTA
1 TATTA
14549737 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:14549834 original size:13 final size:14
Alignment explanation
Indices: 14549814--14549845 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
14549804 ATAATATGAA
14549814 AATA-TAATATTTT
1 AATATTAATATTTT
14549827 -ATATTAATATTTT
1 AATATTAATATTTT
14549840 AATATT
1 AATATT
14549846 TTTATTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
12 3 0.18
13 9 0.53
14 5 0.29
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
AATATTAATATTTT
Found at i:14550558 original size:15 final size:15
Alignment explanation
Indices: 14550509--14550559 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
14550499 TTGTCTTAGG
*
14550509 TTACATTTTAGTCAC
1 TTACGTTTTAGTCAC
* *
14550524 TTATGTTTTAAAT-A-
1 TTACGTTTT-AGTCAC
14550538 TTACGTTTTAGTCAC
1 TTACGTTTTAGTCAC
14550553 TTACGTT
1 TTACGTT
14550560 ATCGTGTTGC
Statistics
Matches: 28, Mismatches: 5, Indels: 6
0.72 0.13 0.15
Matches are distributed among these distances:
13 2 0.07
14 9 0.32
15 15 0.54
16 2 0.07
ACGTcount: A:0.25, C:0.14, G:0.10, T:0.51
Consensus pattern (15 bp):
TTACGTTTTAGTCAC
Found at i:14551114 original size:10 final size:10
Alignment explanation
Indices: 14551099--14551160 Score: 81
Period size: 10 Copynumber: 6.1 Consensus size: 10
14551089 TTGTTAGAAA
14551099 AAGCTAAATT
1 AAGCTAAATT
14551109 AAGCTAAATT
1 AAGCTAAATT
*
14551119 ATTGCTAGAA-T
1 A-AGCTA-AATT
14551130 AAGCTAAATT
1 AAGCTAAATT
14551140 AAGCTAAATT
1 AAGCTAAATT
*
14551150 AAGTTAAATT
1 AAGCTAAATT
14551160 A
1 A
14551161 TTGGTCTCTT
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
9 2 0.04
10 36 0.78
11 6 0.13
12 2 0.04
ACGTcount: A:0.48, C:0.08, G:0.11, T:0.32
Consensus pattern (10 bp):
AAGCTAAATT
Found at i:14551120 original size:31 final size:31
Alignment explanation
Indices: 14551082--14551150 Score: 120
Period size: 31 Copynumber: 2.2 Consensus size: 31
14551072 AACTCTAGGT
*
14551082 TAAATTATTGTTAGAAAAAGCTAAATTAAGC
1 TAAATTATTGCTAGAAAAAGCTAAATTAAGC
*
14551113 TAAATTATTGCTAGAATAAGCTAAATTAAGC
1 TAAATTATTGCTAGAAAAAGCTAAATTAAGC
14551144 TAAATTA
1 TAAATTA
14551151 AGTTAAATTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.48, C:0.07, G:0.12, T:0.33
Consensus pattern (31 bp):
TAAATTATTGCTAGAAAAAGCTAAATTAAGC
Found at i:14552411 original size:25 final size:25
Alignment explanation
Indices: 14552364--14552411 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
14552354 TTTAATGTCG
* * *
14552364 AAAATTTAAAAATATGATCCTTAAT
1 AAAACTTAAAAAAATGATACTTAAT
*
14552389 AAAACTTAAAAAAATGTTACTTA
1 AAAACTTAAAAAAATGATACTTA
14552412 TTAAGACTCT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.54, C:0.08, G:0.04, T:0.33
Consensus pattern (25 bp):
AAAACTTAAAAAAATGATACTTAAT
Found at i:14552979 original size:4 final size:4
Alignment explanation
Indices: 14552937--14552972 Score: 54
Period size: 4 Copynumber: 8.8 Consensus size: 4
14552927 AATTGTATAG
*
14552937 AAAT AACAT AAAT AAAT AAAT AAAT AAAC AAAT AAA
1 AAAT AA-AT AAAT AAAT AAAT AAAT AAAT AAAT AAA
14552973 AATAAATCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 25 0.86
5 4 0.14
ACGTcount: A:0.75, C:0.06, G:0.00, T:0.19
Consensus pattern (4 bp):
AAAT
Found at i:14553575 original size:3 final size:3
Alignment explanation
Indices: 14553567--14553632 Score: 68
Period size: 3 Copynumber: 22.3 Consensus size: 3
14553557 ATATATAGGT
14553567 ATA ATA ATA ATA TATA AT- ATA ATA ATA ATA ATA ATGA A-A ATA ATA
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA
*
14553612 AT- ATCA ATA CTA ATA A-A ATA A
1 ATA AT-A ATA ATA ATA ATA ATA A
14553633 ACTAAAAAAC
Statistics
Matches: 54, Mismatches: 2, Indels: 14
0.77 0.03 0.20
Matches are distributed among these distances:
2 8 0.15
3 39 0.72
4 7 0.13
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:14553589 original size:18 final size:18
Alignment explanation
Indices: 14553566--14553615 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
14553556 TATATATAGG
14553566 TATAATAATAATATATAA
1 TATAATAATAATATATAA
14553584 TATAATAATAATA-ATAA
1 TATAATAATAATATATAA
*
14553601 TGAAAATAATAATAT
1 T-ATAATAATAATAT
14553616 CAATACTAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 5 0.17
18 24 0.83
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (18 bp):
TATAATAATAATATATAA
Found at i:14555436 original size:16 final size:16
Alignment explanation
Indices: 14555415--14555447 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14555405 ATCCCTCTTA
14555415 AATAATATTATA-TAAG
1 AATAAT-TTATATTAAG
14555431 AATAATTTATATTAAG
1 AATAATTTATATTAAG
14555447 A
1 A
14555448 TTGTTTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (16 bp):
AATAATTTATATTAAG
Found at i:14555719 original size:16 final size:17
Alignment explanation
Indices: 14555687--14555719 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
14555677 TAATAACTTG
14555687 AATTTTATAAAAAAAAT
1 AATTTTATAAAAAAAAT
*
14555704 AATTTTA-AAAAGAAAT
1 AATTTTATAAAAAAAAT
14555720 TATTCTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (17 bp):
AATTTTATAAAAAAAAT
Found at i:14556491 original size:21 final size:20
Alignment explanation
Indices: 14556453--14556503 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
14556443 TGAGTTTAGG
*
14556453 ATTTTTTT-TATATTTTTAA
1 ATTTTTTTATATATATTTAA
*
14556472 ATTTTTTTATATAATATTTAG
1 ATTTTTTTATAT-ATATTTAA
14556493 ATTTTTTTATA
1 ATTTTTTTATA
14556504 ATTTTTTGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 8 0.29
20 3 0.11
21 17 0.61
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (20 bp):
ATTTTTTTATATATATTTAA
Found at i:14558095 original size:21 final size:21
Alignment explanation
Indices: 14558069--14558108 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
14558059 GTACTATTTT
*
14558069 TTTGAACTAGAGCCAATTCTA
1 TTTGAACCAGAGCCAATTCTA
14558090 TTTGAACCAGAGCCAATTC
1 TTTGAACCAGAGCCAATTC
14558109 CAACTGAACC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.30
Consensus pattern (21 bp):
TTTGAACCAGAGCCAATTCTA
Found at i:14558116 original size:21 final size:21
Alignment explanation
Indices: 14558071--14558121 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
14558061 ACTATTTTTT
* * **
14558071 TGAACTAGAGCCAATTCTATT
1 TGAACCAGAGCCAATTCCAAC
14558092 TGAACCAGAGCCAATTCCAAC
1 TGAACCAGAGCCAATTCCAAC
14558113 TGAACCAGA
1 TGAACCAGA
14558122 ATATGGAGGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.37, C:0.25, G:0.16, T:0.22
Consensus pattern (21 bp):
TGAACCAGAGCCAATTCCAAC
Found at i:14560851 original size:12 final size:12
Alignment explanation
Indices: 14560834--14560866 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
14560824 TGACCCGCCC
14560834 ATATTAATTTTT
1 ATATTAATTTTT
*
14560846 ATATTATTTTTT
1 ATATTAATTTTT
14560858 ATA-TAATTT
1 ATATTAATTT
14560867 AAAAAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 5 0.26
12 14 0.74
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:14569546 original size:23 final size:23
Alignment explanation
Indices: 14569520--14569565 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
14569510 AAAAAATTTA
*
14569520 AGATGCCTGATTTGTGTTTATTG
1 AGATGCCTGATTTGGGTTTATTG
**
14569543 AGATGTTTGATTTGGGTTTATTG
1 AGATGCCTGATTTGGGTTTATTG
14569566 CATTACGTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.17, C:0.04, G:0.28, T:0.50
Consensus pattern (23 bp):
AGATGCCTGATTTGGGTTTATTG
Found at i:14570695 original size:20 final size:20
Alignment explanation
Indices: 14570652--14570695 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
14570642 GTTTTAAACT
14570652 AAAC-TTTTTTATTAACATA
1 AAACTTTTTTTATTAACATA
* *
14570671 TAACTTTTTTTATTAACTTA
1 AAACTTTTTTTATTAACATA
14570691 AAACT
1 AAACT
14570696 CCTAAATAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 3 0.14
20 18 0.86
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (20 bp):
AAACTTTTTTTATTAACATA
Found at i:14571143 original size:16 final size:16
Alignment explanation
Indices: 14571107--14571146 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
14571097 AAAAGTCCAA
14571107 AAAAAATATATTTAAT
1 AAAAAATATATTTAAT
* *
14571123 AAAAAGTATATTTGAT
1 AAAAAATATATTTAAT
*
14571139 TAAAAATA
1 AAAAAATA
14571147 AAAATAAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (16 bp):
AAAAAATATATTTAAT
Found at i:14571150 original size:6 final size:6
Alignment explanation
Indices: 14571139--14571170 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
14571129 TATATTTGAT
14571139 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TA
14571171 TTTAACATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
TAAAAA
Found at i:14571454 original size:11 final size:12
Alignment explanation
Indices: 14571422--14571455 Score: 54
Period size: 11 Copynumber: 3.0 Consensus size: 12
14571412 GGCCTGTCCG
14571422 TATTAATTTTTA
1 TATTAATTTTTA
14571434 TATTAA-TTTTA
1 TATTAATTTTTA
14571445 TA-TAATTTTTA
1 TATTAATTTTTA
14571456 AAAAAACTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 3 0.14
11 12 0.57
12 6 0.29
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (12 bp):
TATTAATTTTTA
Found at i:14571705 original size:29 final size:29
Alignment explanation
Indices: 14571668--14571724 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
14571658 AAAATAGTGG
*
14571668 AAAACAACAAGAAAATAGCAACAAAACAAT
1 AAAACAACAAGAAAACAGCAA-AAAACAAT
*
14571698 AAAA-AACAAGAAAACAGTAAAAAACAA
1 AAAACAACAAGAAAACAGCAAAAAACAA
14571725 CAATTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 7 0.28
29 14 0.56
30 4 0.16
ACGTcount: A:0.74, C:0.14, G:0.07, T:0.05
Consensus pattern (29 bp):
AAAACAACAAGAAAACAGCAAAAAACAAT
Found at i:14571713 original size:18 final size:18
Alignment explanation
Indices: 14571690--14571724 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
14571680 AAATAGCAAC
14571690 AAAACAATAAAAAACAAG
1 AAAACAATAAAAAACAAG
*
14571708 AAAACAGTAAAAAACAA
1 AAAACAATAAAAAACAA
14571725 CAATTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.77, C:0.11, G:0.06, T:0.06
Consensus pattern (18 bp):
AAAACAATAAAAAACAAG
Found at i:14578095 original size:55 final size:55
Alignment explanation
Indices: 14578006--14578118 Score: 172
Period size: 55 Copynumber: 2.1 Consensus size: 55
14577996 CACAGACGTA
* * *
14578006 TGGTTTGGCCATGTGACCCAAGTCAGGGAGTTACATGGGCTAGGACACGGGCGTG
1 TGGTCTGGCCATGTGACCCAAGTCAGGGAGTTACACGGGCAAGGACACGGGCGTG
* * *
14578061 TGGTCTGGCCGTGTGACCCAAGTCAGTGAGTTACACGGGCAAGGATACGGGCGTG
1 TGGTCTGGCCATGTGACCCAAGTCAGGGAGTTACACGGGCAAGGACACGGGCGTG
14578116 TGG
1 TGG
14578119 CCCCATTTCG
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.19, C:0.20, G:0.39, T:0.21
Consensus pattern (55 bp):
TGGTCTGGCCATGTGACCCAAGTCAGGGAGTTACACGGGCAAGGACACGGGCGTG
Found at i:14578613 original size:40 final size:40
Alignment explanation
Indices: 14578569--14578666 Score: 117
Period size: 40 Copynumber: 2.5 Consensus size: 40
14578559 CGTTTGGAAG
*
14578569 AAAAACGCCGCTAAAAATTAAGCAT-TAGCGGTGCTTTTAA
1 AAAAACGCCGCTAAAAATCAAG-ATCTAGCGGTGCTTTTAA
* * * * * *
14578609 AAAAACGCCACTAAAGATCGAGTTCTAGTGGTGCTTTTGA
1 AAAAACGCCGCTAAAAATCAAGATCTAGCGGTGCTTTTAA
14578649 AAAAACGCCGCTAAAAAT
1 AAAAACGCCGCTAAAAAT
14578667 GAGTATTAGC
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
39 1 0.02
40 47 0.98
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.23
Consensus pattern (40 bp):
AAAAACGCCGCTAAAAATCAAGATCTAGCGGTGCTTTTAA
Found at i:14578808 original size:41 final size:41
Alignment explanation
Indices: 14578740--14579022 Score: 361
Period size: 41 Copynumber: 6.9 Consensus size: 41
14578730 GAGTTTTCGG
* * * *
14578740 GGGCTTTCGCGGCGTTTATAAAAAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCA
* *
14578781 GGGTTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCG
1 GGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCA
* * *
14578822 GGGCTTTAGCGCCGTTTTTGAAGAAGCGCCGGTAATGCTCG
1 GGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCA
* *
14578863 GGGCTTTAGCGGCGTTTTTTAAGAAGCGCCGCTAATGCTCG
1 GGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCA
* * *
14578904 GGGATTTAGCGGCGTTTTTGAAGAAGCGCTGCTAATGCTCC
1 GGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCA
* * * *
14578945 GAGATTTAGCGGCGTTTTTGAGGAGGCGCCGCTAATGCT-A
1 GGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCA
* **
14578985 GGGGCTATAGCGGCGTTTTTGGGGAAGCGCCGCTAATG
1 -GGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATG
14579023 ATCTATTTTT
Statistics
Matches: 215, Mismatches: 26, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
41 215 1.00
ACGTcount: A:0.19, C:0.20, G:0.34, T:0.27
Consensus pattern (41 bp):
GGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCA
Found at i:14579309 original size:15 final size:15
Alignment explanation
Indices: 14579289--14579318 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14579279 TATTTTAAAA
14579289 GGTTTAGGGAGTATG
1 GGTTTAGGGAGTATG
*
14579304 GGTTTAGGGATTATG
1 GGTTTAGGGAGTATG
14579319 AATTAGGGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.00, G:0.43, T:0.37
Consensus pattern (15 bp):
GGTTTAGGGAGTATG
Found at i:14579358 original size:21 final size:20
Alignment explanation
Indices: 14579324--14579364 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
14579314 TTATGAATTA
*
14579324 GGGATTATGGTTTAAGGGTT
1 GGGATTAAGGTTTAAGGGTT
*
14579344 GGGATTTAAGGTTTATGGGTT
1 GGGA-TTAAGGTTTAAGGGTT
14579365 AGGGGGTTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.20, C:0.00, G:0.39, T:0.41
Consensus pattern (20 bp):
GGGATTAAGGTTTAAGGGTT
Found at i:14579419 original size:15 final size:16
Alignment explanation
Indices: 14579399--14579429 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
14579389 AGGTTAAGAG
14579399 TTAGGGATTC-AGGGT
1 TTAGGGATTCAAGGGT
14579414 TTAGGGATTCAAGGGT
1 TTAGGGATTCAAGGGT
14579430 CAGGTTAGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.23, C:0.06, G:0.39, T:0.32
Consensus pattern (16 bp):
TTAGGGATTCAAGGGT
Found at i:14579614 original size:15 final size:15
Alignment explanation
Indices: 14579594--14579623 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14579584 TATTTTAAAA
14579594 GGTTTAGGGAGTATG
1 GGTTTAGGGAGTATG
*
14579609 GGTTTAGGGATTATG
1 GGTTTAGGGAGTATG
14579624 AATTAGGGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.00, G:0.43, T:0.37
Consensus pattern (15 bp):
GGTTTAGGGAGTATG
Found at i:14579663 original size:21 final size:20
Alignment explanation
Indices: 14579629--14579669 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
14579619 TTATGAATTA
*
14579629 GGGATTATGGTTTAAGGGTT
1 GGGATTAAGGTTTAAGGGTT
*
14579649 GGGATTTAAGGTTTATGGGTT
1 GGGA-TTAAGGTTTAAGGGTT
14579670 AGGGGGTTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.20, C:0.00, G:0.39, T:0.41
Consensus pattern (20 bp):
GGGATTAAGGTTTAAGGGTT
Found at i:14579724 original size:15 final size:16
Alignment explanation
Indices: 14579704--14579734 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
14579694 AGGTTAAGAG
14579704 TTAGGGATTC-AGGGT
1 TTAGGGATTCAAGGGT
14579719 TTAGGGATTCAAGGGT
1 TTAGGGATTCAAGGGT
14579735 CAGGTTAGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.23, C:0.06, G:0.39, T:0.32
Consensus pattern (16 bp):
TTAGGGATTCAAGGGT
Found at i:14579768 original size:305 final size:305
Alignment explanation
Indices: 14579217--14579823 Score: 1162
Period size: 305 Copynumber: 2.0 Consensus size: 305
14579207 ATCACTATAA
* * * *
14579217 TTTAGGGTTTTTGGTTTAGGGTATATGATTTATTTAAGATTTACGGCCGGTTTAGGAGTTCATAT
1 TTTAGGGTTTTTAGTTTAGGGTATATAATTAATTTAAGATTTAAGGCCGGTTTAGGAGTTCATAT
14579282 TTTAAAAGGTTTAGGGAGTATGGGTTTAGGGATTATGAATTAGGGATTATGGTTTAAGGGTTGGG
66 TTTAAAAGGTTTAGGGAGTATGGGTTTAGGGATTATGAATTAGGGATTATGGTTTAAGGGTTGGG
14579347 ATTTAAGGTTTATGGGTTAGGGGGTTAGGGGTTAGACATTAGAGGTTAAGAGTTAGGGATTCAGG
131 ATTTAAGGTTTATGGGTTAGGGGGTTAGGGGTTAGACATTAGAGGTTAAGAGTTAGGGATTCAGG
14579412 GTTTAGGGATTCAAGGGTCAGGTTAGGGTTTTAGGTTTAGATTAATTATTTTTTAATTTATATTT
196 GTTTAGGGATTCAAGGGTCAGGTTAGGGTTTTAGGTTTAGATTAATTATTTTTTAATTTATATTT
14579477 TAAATATGTTCTTATATAATTGTAAAAGAGATAATAATAAATTTG
261 TAAATATGTTCTTATATAATTGTAAAAGAGATAATAATAAATTTG
14579522 TTTAGGGTTTTTAGTTTAGGGTATATAATTAATTTAA-ATTTTAAGGCCGGTTTAGGAGTTCATA
1 TTTAGGGTTTTTAGTTTAGGGTATATAATTAATTTAAGA-TTTAAGGCCGGTTTAGGAGTTCATA
14579586 TTTTAAAAGGTTTAGGGAGTATGGGTTTAGGGATTATGAATTAGGGATTATGGTTTAAGGGTTGG
65 TTTTAAAAGGTTTAGGGAGTATGGGTTTAGGGATTATGAATTAGGGATTATGGTTTAAGGGTTGG
14579651 GATTTAAGGTTTATGGGTTAGGGGGTTAGGGGTTAGACATTAGAGGTTAAGAGTTAGGGATTCAG
130 GATTTAAGGTTTATGGGTTAGGGGGTTAGGGGTTAGACATTAGAGGTTAAGAGTTAGGGATTCAG
14579716 GGTTTAGGGATTCAAGGGTCAGGTTAGGGTTTTAGGTTTAGATTAATTATTTTTTAATTTATATT
195 GGTTTAGGGATTCAAGGGTCAGGTTAGGGTTTTAGGTTTAGATTAATTATTTTTTAATTTATATT
14579781 TTAAATATGTTCTTATATAATTGTAAAAGAGATAATAATAAAT
260 TTAAATATGTTCTTATATAATTGTAAAAGAGATAATAATAAAT
14579824 CAAATATTTT
Statistics
Matches: 297, Mismatches: 4, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
304 1 0.00
305 296 1.00
ACGTcount: A:0.29, C:0.03, G:0.28, T:0.41
Consensus pattern (305 bp):
TTTAGGGTTTTTAGTTTAGGGTATATAATTAATTTAAGATTTAAGGCCGGTTTAGGAGTTCATAT
TTTAAAAGGTTTAGGGAGTATGGGTTTAGGGATTATGAATTAGGGATTATGGTTTAAGGGTTGGG
ATTTAAGGTTTATGGGTTAGGGGGTTAGGGGTTAGACATTAGAGGTTAAGAGTTAGGGATTCAGG
GTTTAGGGATTCAAGGGTCAGGTTAGGGTTTTAGGTTTAGATTAATTATTTTTTAATTTATATTT
TAAATATGTTCTTATATAATTGTAAAAGAGATAATAATAAATTTG
Found at i:14579823 original size:37 final size:37
Alignment explanation
Indices: 14579782--14579902 Score: 88
Period size: 37 Copynumber: 3.3 Consensus size: 37
14579772 ATTTATATTT
14579782 TAAATATGTTCTTATATAATTGTAAAAGAGATAATAA
1 TAAATATGTTCTTATATAATTGTAAAAGAGATAATAA
* * * * *** **
14579819 TAAATCAAATATT-TTGAAATTATGGT--AATTTAT-ATTT
1 TAAAT---ATGTTCTT-ATATAATTGTAAAAGAGATAATAA
14579856 TAAATATGTTCTTATATAATTGTAAAAGAGATAATAA
1 TAAATATGTTCTTATATAATTGTAAAAGAGATAATAA
*
14579893 TAAATTTGTT
1 TAAATATGTT
14579903 TAGGGTTTTT
Statistics
Matches: 57, Mismatches: 19, Indels: 16
0.62 0.21 0.17
Matches are distributed among these distances:
34 11 0.19
35 2 0.04
36 4 0.07
37 23 0.40
38 4 0.07
39 2 0.04
40 11 0.19
ACGTcount: A:0.45, C:0.02, G:0.10, T:0.43
Consensus pattern (37 bp):
TAAATATGTTCTTATATAATTGTAAAAGAGATAATAA
Found at i:14579916 original size:379 final size:384
Alignment explanation
Indices: 14579465--14580231 Score: 1236
Period size: 389 Copynumber: 2.0 Consensus size: 384
14579455 AATTATTTTT
14579465 TAATTTATATTTTAAATATGTTCTTATATAATTGTAAAAGAGATAATAATAAATTTGTTTAGGGT
1 TAATTTATATTTTAAATATGTTCTTATATAATTGTAAAAGAGATAATAATAAATTTGTTTAGGGT
14579530 TTTTAGTTTAGGGTATATAATTAATTTAAATTTTAAGGCCGGTTTAGGAGTTCATATTTTAAAAG
66 TTTTAGTTTAGGGTATATAATTAATTTAAATTTTAAGGCCGGTTTAGGAGTTCATATTTT--AAG
** * *
14579595 GTTTAGGGAGTATGGGTTTAGGGATTATGAATT-AGGGATT-ATGGTTTAAGGGTT-GGGATTTA
129 GTTTAGGGAGTATGGACTTAGGGATTATGAATTAAGGG-TTGAT-ATTTAAGGGTTAGGG-GTTA
*
14579657 -AGGTTTATGGG-TT-AGGG-G-GTTAGGGGTT-AGACATTAGAGG-TTAAGAG-TTA-GG-GAT
191 GAGGTTTAGGGGTTTAAGGGTGAGTTAGGGGTTAAGA-ATTA-AGGATTAAG-GTTTAGGGAGAT
14579712 TCAGGGTTTAGGGATTCAAGGGTCAGGTTAGGGTTTTAGGTTTAGATTAATTATTTTTTAATTTA
253 TCAGGGTTTAGGGATTCAAGGGTCAGGTTAGGGTTTTAGGTTTAGATTAATTATTTTTTAATTTA
*
14579777 TATTTTAAATATGTTCTTATATAATTGTAAAAGAGATAATAATAAATCAAATATTTTGAAATTAT
318 TATTTTAAATATGTTCTTATATAATTGTAAAAGAGATAATAATAAATCAAATATATTGAAATTAT
14579842 GG
383 GG
14579844 TAATTTATATTTTAAATATGTTCTTATATAATTGTAAAAGAGATAATAATAAATTTGTTTAGGGT
1 TAATTTATATTTTAAATATGTTCTTATATAATTGTAAAAGAGATAATAATAAATTTGTTTAGGGT
14579909 TTTTAGTTTAGGGTATATAATTAATTTAAATTTTAAGGCCGGTTTAGGAGTTCATATTTTAAGGT
66 TTTTAGTTTAGGGTATATAATTAATTTAAATTTTAAGGCCGGTTTAGGAGTTCATATTTTAAGGT
** *
14579974 TTAGGGAGTATGGACTTAGGGATTATGGTTTAAGGGTTGATATTTAAGGTTTAGGGGTTAGAGGT
131 TTAGGGAGTATGGACTTAGGGATTATGAATTAAGGGTTGATATTTAAGGGTTAGGGGTTAGAGGT
*
14580039 TTAGGGGTTTAAGGGTTAGACGTTAGGGGTTAAGAGTTAAGGATTTAAGGTTTAGGGATGATTCA
196 TTAGGGGTTTAAGGG-T-GA-GTTAGGGGTTAAGAATTAAGGA-TTAAGGTTTAGGGA-GATTCA
14580104 GGGTTTAGGGATTCAAGGGTCAGGTTAGGGTTTTAGGTTTAGATTAATTATTTTTTAATTTATAT
256 GGGTTTAGGGATTCAAGGGTCAGGTTAGGGTTTTAGGTTTAGATTAATTATTTTTTAATTTATAT
14580169 TTTAAATATGTTCTTATATAATTGTAAAAGAGATAATAATAAATCAAATATATTGAAATTATG
321 TTTAAATATGTTCTTATATAATTGTAAAAGAGATAATAATAAATCAAATATATTGAAATTATG
14580232 AGTATAGTTT
Statistics
Matches: 360, Mismatches: 10, Indels: 26
0.91 0.03 0.07
Matches are distributed among these distances:
377 46 0.13
378 19 0.05
379 127 0.35
380 4 0.01
383 1 0.00
384 3 0.01
385 14 0.04
386 11 0.03
387 2 0.01
389 133 0.37
ACGTcount: A:0.32, C:0.03, G:0.24, T:0.41
Consensus pattern (384 bp):
TAATTTATATTTTAAATATGTTCTTATATAATTGTAAAAGAGATAATAATAAATTTGTTTAGGGT
TTTTAGTTTAGGGTATATAATTAATTTAAATTTTAAGGCCGGTTTAGGAGTTCATATTTTAAGGT
TTAGGGAGTATGGACTTAGGGATTATGAATTAAGGGTTGATATTTAAGGGTTAGGGGTTAGAGGT
TTAGGGGTTTAAGGGTGAGTTAGGGGTTAAGAATTAAGGATTAAGGTTTAGGGAGATTCAGGGTT
TAGGGATTCAAGGGTCAGGTTAGGGTTTTAGGTTTAGATTAATTATTTTTTAATTTATATTTTAA
ATATGTTCTTATATAATTGTAAAAGAGATAATAATAAATCAAATATATTGAAATTATGG
Found at i:14580048 original size:23 final size:22
Alignment explanation
Indices: 14580021--14580077 Score: 71
Period size: 23 Copynumber: 2.6 Consensus size: 22
14580011 TGATATTTAA
* *
14580021 GGTTTAGGGGTTAGAGGTTTAGG
1 GGTTTAAGGGTTAGACG-TTAGG
14580044 GGTTTAAGGGTTAGACGTTAGG
1 GGTTTAAGGGTTAGACGTTAGG
*
14580066 GG-TTAAGAGTTA
1 GGTTTAAGGGTTA
14580078 AGGATTTAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
21 9 0.29
22 7 0.23
23 15 0.48
ACGTcount: A:0.23, C:0.02, G:0.42, T:0.33
Consensus pattern (22 bp):
GGTTTAAGGGTTAGACGTTAGG
Done.