Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47972186
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2603476 characters in sequence are not A, C, G, or T
File 43 of 145
Found at i:15263151 original size:18 final size:18
Alignment explanation
Indices: 15263128--15263164 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
15263118 ATAAGTGATC
15263128 ATACGTAAGACCATAGTT
1 ATACGTAAGACCATAGTT
15263146 ATACGTAAGACCATAGTT
1 ATACGTAAGACCATAGTT
15263164 A
1 A
15263165 CACTATGACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (18 bp):
ATACGTAAGACCATAGTT
Found at i:15265563 original size:18 final size:17
Alignment explanation
Indices: 15265531--15265577 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 17
15265521 TTTTTTCAAT
15265531 ATAAAAACAGAAAATAA
1 ATAAAAACAGAAAATAA
*
15265548 ATAAAACACCGAAAATAAA
1 ATAAAA-ACAGAAAAT-AA
*
15265567 AAAAAAACAGA
1 ATAAAAACAGA
15265578 GATGCAATTC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
17 6 0.24
18 12 0.48
19 7 0.28
ACGTcount: A:0.74, C:0.11, G:0.06, T:0.09
Consensus pattern (17 bp):
ATAAAAACAGAAAATAA
Found at i:15268410 original size:38 final size:38
Alignment explanation
Indices: 15268367--15268492 Score: 132
Period size: 38 Copynumber: 3.2 Consensus size: 38
15268357 AATTACTATA
15268367 AGAAATAATAATTTAAATTGAATTCTTTTGCAAAATAT
1 AGAAATAATAATTTAAATTGAATTCTTTTGCAAAATAT
* * * *
15268405 AGAAATAA-AA-CTAAGGTTTATAGCTCTTTTG-AAATTACTAT
1 AGAAATAATAATTTAA-ATTGA-A-TTCTTTTGCAAA--A-TAT
15268446 AAGAAATAATAATTTAAATTGAATTCTTTTGCAAAATAT
1 -AGAAATAATAATTTAAATTGAATTCTTTTGCAAAATAT
15268485 AGAAATAA
1 AGAAATAA
15268493 AACTAAGGTT
Statistics
Matches: 70, Mismatches: 8, Indels: 20
0.71 0.08 0.20
Matches are distributed among these distances:
36 3 0.04
37 5 0.07
38 20 0.29
39 10 0.14
40 2 0.03
41 10 0.14
42 12 0.17
43 5 0.07
44 3 0.04
ACGTcount: A:0.48, C:0.06, G:0.10, T:0.37
Consensus pattern (38 bp):
AGAAATAATAATTTAAATTGAATTCTTTTGCAAAATAT
Found at i:15268438 original size:80 final size:80
Alignment explanation
Indices: 15268344--15268504 Score: 313
Period size: 80 Copynumber: 2.0 Consensus size: 80
15268334 AATAAAAAAG
15268344 ATAGCTCTCTTGAAATTACTATAAGAAATAATAATTTAAATTGAATTCTTTTGCAAAATATAGAA
1 ATAGCTCTCTTGAAATTACTATAAGAAATAATAATTTAAATTGAATTCTTTTGCAAAATATAGAA
15268409 ATAAAACTAAGGTTT
66 ATAAAACTAAGGTTT
*
15268424 ATAGCTCTTTTGAAATTACTATAAGAAATAATAATTTAAATTGAATTCTTTTGCAAAATATAGAA
1 ATAGCTCTCTTGAAATTACTATAAGAAATAATAATTTAAATTGAATTCTTTTGCAAAATATAGAA
15268489 ATAAAACTAAGGTTT
66 ATAAAACTAAGGTTT
15268504 A
1 A
15268505 ATTCATAAAT
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 80 1.00
ACGTcount: A:0.45, C:0.08, G:0.10, T:0.37
Consensus pattern (80 bp):
ATAGCTCTCTTGAAATTACTATAAGAAATAATAATTTAAATTGAATTCTTTTGCAAAATATAGAA
ATAAAACTAAGGTTT
Found at i:15268893 original size:27 final size:27
Alignment explanation
Indices: 15268842--15268894 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
15268832 AAACTTTAAA
* **
15268842 ATAATTTGTTATATGAAATTTTTTTTG
1 ATAATTTGTTATATAAAATAATTTTTG
*
15268869 ATAATTTTTTATATAAAATAATTTTT
1 ATAATTTGTTATATAAAATAATTTTT
15268895 CTTATATGAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (27 bp):
ATAATTTGTTATATAAAATAATTTTTG
Found at i:15280532 original size:93 final size:94
Alignment explanation
Indices: 15280392--15280580 Score: 371
Period size: 93 Copynumber: 2.0 Consensus size: 94
15280382 CTAAAATGAC
15280392 AACTAACTATTTTAATATGATAATGGGCGGTTGGTATGACGATTAGCATAAATTTTATAAAATTA
1 AACTAACTATTTTAATATGATAATGGGCGGTTGGTATGACGATTAGCATAAATTTTATAAAATTA
15280457 TGATATAATTAAAATTATAAAATATAATT
66 TGATATAATTAAAATTATAAAATATAATT
15280486 AACTAACTA-TTTAATATGATAATGGGCGGTTGGTATGACGATTAGCATAAATTTTATAAAATTA
1 AACTAACTATTTTAATATGATAATGGGCGGTTGGTATGACGATTAGCATAAATTTTATAAAATTA
15280550 TGATATAATTAAAATTATAAAATATAATT
66 TGATATAATTAAAATTATAAAATATAATT
15280579 AA
1 AA
15280581 TTAAATAAAA
Statistics
Matches: 95, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
93 86 0.91
94 9 0.09
ACGTcount: A:0.44, C:0.05, G:0.13, T:0.38
Consensus pattern (94 bp):
AACTAACTATTTTAATATGATAATGGGCGGTTGGTATGACGATTAGCATAAATTTTATAAAATTA
TGATATAATTAAAATTATAAAATATAATT
Found at i:15280568 original size:25 final size:23
Alignment explanation
Indices: 15280539--15280585 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
15280529 AGCATAAATT
*
15280539 TTATAAAATTATGATATAATTAAAA
1 TTATAAAA-TATAAT-TAATTAAAA
15280564 TTATAAAATATAATTAATTAAA
1 TTATAAAATATAATTAATTAAA
15280586 TAAAAGAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 8 0.38
24 5 0.24
25 8 0.38
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (23 bp):
TTATAAAATATAATTAATTAAAA
Found at i:15283979 original size:50 final size:50
Alignment explanation
Indices: 15283911--15284157 Score: 246
Period size: 50 Copynumber: 4.9 Consensus size: 50
15283901 AAAGTGATTG
* * *
15283911 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGAAAGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAATGA
* * * * * **
15283961 TCGCATGTGTAGTACTATGTCCAAGCTACTATGTGTACC-GAATAGCTTCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAT-GAAT-GA
* * * * *
15284012 TCACGTGTGTAGCACTATATGCAGGCTACTACGTGTATCGGATATTAATGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGA-ATGAATGA
* * * * **
15284063 TCATGTGTGTAGTACTATGTGCAGGCTACTACGTGAACTGGAAAGTTTGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAATGA
* *
15284113 TCACGTGTGTAGTACTATGTGAAGGCTACTACATGTA-CGGAATGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGA
15284158 TAATAGTTAA
Statistics
Matches: 153, Mismatches: 40, Indels: 9
0.76 0.20 0.04
Matches are distributed among these distances:
49 9 0.06
50 70 0.46
51 69 0.45
52 3 0.02
53 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAATGA
Found at i:15284040 original size:51 final size:50
Alignment explanation
Indices: 15283911--15284155 Score: 226
Period size: 51 Copynumber: 4.9 Consensus size: 50
15283901 AAAGTGATTG
* *** *
15283911 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAAT-GAAAGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACC-GAATAGTTTGA
* * * * * *
15283961 TCGCATGTGTAGTACTATGTCCAAGCTACTATGTGTACCGAATAGCTTCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATAG-TTTGA
* * * * *
15284012 TCACGTGTGTAGCACTATATGCAGGCTACTACGTGTATCGGATA-TTAATGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATAGTT--TGA
* * *
15284063 TCATGTGTGTAGTACTATGTGCAGGCTACTACGTGAACTGGAA-AGTTTGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTAC-CGAATAGTTTGA
* * *
15284113 TCACGTGTGTAGTACTATGTGAAGGCTACTACATGTACGGAAT
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAT
15284156 GATAATAGTT
Statistics
Matches: 155, Mismatches: 33, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
49 10 0.06
50 70 0.45
51 71 0.46
52 4 0.03
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATAGTTTGA
Found at i:15284179 original size:101 final size:103
Alignment explanation
Indices: 15283911--15284187 Score: 307
Period size: 101 Copynumber: 2.7 Consensus size: 103
15283901 AAAGTGATTG
* **
15283911 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGA-AA-GGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGGAATGATAATGGTCAAATGTGTAGT
* * *
15283974 ACTATGTCCAAGCTACTATGTGTACCGAATAGCTTCGA
66 ACTATGTGCAAGCTACTACGTGAACCGAATAGCTTCGA
* * * * **
15284012 TCACGTGTGTAGCACTATATGCAGGCTACTACGTGTATCGG-AT-ATTAATGGTCATGTGTGTAG
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGGAATGA-TAATGGTCAAATGTGTAG
* * *
15284075 TACTATGTGCAGGCTACTACGTGAACTGGAA-AG-TTTGA
65 TACTATGTGCAAGCTACTACGTGAAC-CGAATAGCTTCGA
* * * * *
15284113 TCACGTGTGTAGTACTATGTGAAGGCTACTACATGTA-CGGAATGATAATAGTTAAATGAGTGGT
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGGAATGATAATGGTCAAATGTGTAGT
15284177 ACTATGTGCAA
66 ACTATGTGCAA
15284188 ACCACCGAAT
Statistics
Matches: 146, Mismatches: 24, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
99 1 0.01
100 5 0.03
101 101 0.69
102 36 0.25
103 3 0.02
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (103 bp):
TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGGAATGATAATGGTCAAATGTGTAGT
ACTATGTGCAAGCTACTACGTGAACCGAATAGCTTCGA
Found at i:15286378 original size:21 final size:21
Alignment explanation
Indices: 15286339--15286378 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
15286329 TTTCTAAATC
*
15286339 GAGTTGAGTTATATTAAATAT
1 GAGTTGAGTTATATCAAATAT
15286360 GAGTTGAGTTGA-ATCAAAT
1 GAGTTGAGTT-ATATCAAAT
15286379 CCAAACTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 16 0.94
22 1 0.06
ACGTcount: A:0.38, C:0.03, G:0.23, T:0.38
Consensus pattern (21 bp):
GAGTTGAGTTATATCAAATAT
Found at i:15292910 original size:27 final size:28
Alignment explanation
Indices: 15292880--15292936 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
15292870 CAGGAATGAT
15292880 TATGCTTT-TTTCCAAAATGGAAAAATG
1 TATGCTTTGTTTCCAAAATGGAAAAATG
15292907 TATGCTTTGTTTCCAAAATGGAAAAATG
1 TATGCTTTGTTTCCAAAATGGAAAAATG
15292935 TA
1 TA
15292937 ATCATTTGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 8 0.28
28 21 0.72
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.37
Consensus pattern (28 bp):
TATGCTTTGTTTCCAAAATGGAAAAATG
Found at i:15292976 original size:6 final size:6
Alignment explanation
Indices: 15292965--15293016 Score: 86
Period size: 6 Copynumber: 8.7 Consensus size: 6
15292955 TAGGTTTCCA
* *
15292965 AAATGG AAATGG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG
1 AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG
15293013 AAAT
1 AAAT
15293017 GATTCATTTG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.63, C:0.00, G:0.19, T:0.17
Consensus pattern (6 bp):
AAATAG
Found at i:15318387 original size:19 final size:21
Alignment explanation
Indices: 15318349--15318387 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
15318339 CTGGATAAAA
15318349 GTATCAATACTATGGACCAAT
1 GTATCAATACTATGGACCAAT
*
15318370 GTATCGATACT-T-GACCAA
1 GTATCAATACTATGGACCAA
15318388 ATGAACAGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 1 0.06
21 10 0.59
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (21 bp):
GTATCAATACTATGGACCAAT
Found at i:15324580 original size:26 final size:26
Alignment explanation
Indices: 15324543--15324594 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15324533 GAAGCAAGCT
15324543 AATCACCAGTGCTTAAAATTGATTAA
1 AATCACCAGTGCTTAAAATTGATTAA
*
15324569 AATCACCCGTGCTTAAAATTGATTAA
1 AATCACCAGTGCTTAAAATTGATTAA
15324595 GTTTATAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (26 bp):
AATCACCAGTGCTTAAAATTGATTAA
Found at i:15340107 original size:25 final size:25
Alignment explanation
Indices: 15340063--15340111 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
15340053 GTCGCCGCAA
* *
15340063 GCCACACACTTTATCCACCCAAACC
1 GCCACACACCTTAGCCACCCAAACC
*
15340088 GCCACACACCTTAGCTACCCAAAC
1 GCCACACACCTTAGCCACCCAAAC
15340112 TGCCGCAAGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.47, G:0.06, T:0.14
Consensus pattern (25 bp):
GCCACACACCTTAGCCACCCAAACC
Found at i:15342777 original size:52 final size:52
Alignment explanation
Indices: 15342677--15342819 Score: 243
Period size: 52 Copynumber: 2.8 Consensus size: 52
15342667 TGAACTTAGA
* *
15342677 AATTGTGTATAAGGTAACCCATAAAAAA-TAATTTCTTAGAAAAATTAAATT
1 AATTGTGTATAAGTTAACCCATAAAAAATTAATTTCTTAGAAAAATTAAAGT
*
15342728 AATTGTGTATAAGTTAACCCATAAAAAATTGATTTCTTAGAAAAATTAAAGT
1 AATTGTGTATAAGTTAACCCATAAAAAATTAATTTCTTAGAAAAATTAAAGT
*
15342780 AACTGTGTATAAGTTAACCCATAAAAAATTAATTTCTTAG
1 AATTGTGTATAAGTTAACCCATAAAAAATTAATTTCTTAG
15342820 GGTTTAGTGT
Statistics
Matches: 86, Mismatches: 5, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
51 27 0.31
52 59 0.69
ACGTcount: A:0.46, C:0.09, G:0.10, T:0.34
Consensus pattern (52 bp):
AATTGTGTATAAGTTAACCCATAAAAAATTAATTTCTTAGAAAAATTAAAGT
Found at i:15344483 original size:8 final size:8
Alignment explanation
Indices: 15344470--15344495 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
15344460 TGTTTTCCTA
15344470 TCCCATTT
1 TCCCATTT
15344478 TCCCATTT
1 TCCCATTT
15344486 TCCCATTT
1 TCCCATTT
15344494 TC
1 TC
15344496 AAGTGAGTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.12, C:0.38, G:0.00, T:0.50
Consensus pattern (8 bp):
TCCCATTT
Found at i:15346001 original size:14 final size:14
Alignment explanation
Indices: 15345956--15346002 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 14
15345946 TTTTAGATTT
15345956 TTAAATTAAATATTA
1 TTAAATTAAATA-TA
15345971 TTAACAATTTAAA-ATA
1 TT-A-AA-TTAAATATA
15345987 TTAAATTAAATATA
1 TTAAATTAAATATA
15346001 TT
1 TT
15346003 TTAATATAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
13 5 0.18
14 7 0.25
15 3 0.11
16 5 0.18
17 3 0.11
18 5 0.18
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (14 bp):
TTAAATTAAATATA
Found at i:15347276 original size:40 final size:40
Alignment explanation
Indices: 15347232--15347647 Score: 498
Period size: 40 Copynumber: 10.4 Consensus size: 40
15347222 AATTATTGAA
* * * *
15347232 TGATTACACTTATGTGCCCATGTTTGTACTTCGGTACTCC
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCC
* * *
15347272 TGATTGCACTTATGTGCCCCTATTTGTACTTCAGTACCCC
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCC
15347312 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCC
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCC
* *
15347352 TGATTGCACTTGCGTGCCCCTGTTTGTACTTTGGTACCCC
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCC
* *
15347392 TGATTGCACCTACGTGCCCTTGTTTGTACTTCGGTACCCC
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCC
* *
15347432 TAATTGCACTTACGTGCCCCTGTTTGTACTTTGGTACCCC
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * *
15347472 TAATTGCACTTACGTGCCCTTATTT-TACTTCGGTACCAC
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCC
* * **
15347511 TGATTGCACTTACATGTCCCTGTTTGTACTTCGGTACTGC
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCC
* * *
15347551 TGATTACACTTACGTGCCCCTGTTTGTACTTTGGCACCCC
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCC
* ** * * *
15347591 TAAAAGCACATCTA--TGCCCATGTTTGCACTTCGGTGCCCC
1 TGATTGCAC-T-TACGTGCCCCTGTTTGTACTTCGGTACCCC
*
15347631 TGATCGCACATT-CGTGC
1 TGATTGCAC-TTACGTGC
15347648 TTCTGATTGC
Statistics
Matches: 323, Mismatches: 48, Indels: 10
0.85 0.13 0.03
Matches are distributed among these distances:
39 33 0.10
40 287 0.89
41 1 0.00
42 2 0.01
ACGTcount: A:0.16, C:0.30, G:0.18, T:0.36
Consensus pattern (40 bp):
TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCC
Found at i:15347311 original size:20 final size:20
Alignment explanation
Indices: 15347288--15347508 Score: 73
Period size: 20 Copynumber: 11.1 Consensus size: 20
15347278 CACTTATGTG
15347288 CCCCTATTTGTACTTCAGTA
1 CCCCTATTTGTACTTCAGTA
* *
15347308 CCCCTGA-TTGCACTT-ACGTG
1 CCCCT-ATTTGTACTTCA-GTA
* *
15347328 CCCCTGTTTGTACTTCGGTA
1 CCCCTATTTGTACTTCAGTA
* *
15347348 CCCCTGA-TTGCACTTGC-GTG
1 CCCCT-ATTTGTACTT-CAGTA
* **
15347368 CCCCTGTTTGTACTTTGGTA
1 CCCCTATTTGTACTTCAGTA
* * *
15347388 CCCCTGA-TTGCACCT-ACGTG
1 CCCCT-ATTTGTACTTCA-GTA
* * *
15347408 CCCTTGTTTGTACTTCGGTA
1 CCCCTATTTGTACTTCAGTA
* * *
15347428 CCCCTAATTGCACTT-ACGTG
1 CCCCTATTTGTACTTCA-GTA
* **
15347448 CCCCTGTTTGTACTTTGGTA
1 CCCCTATTTGTACTTCAGTA
* * *
15347468 CCCCTAATTGCACTT-ACGTG
1 CCCCTATTTGTACTTCA-GTA
* *
15347488 CCCTTATTT-TACTTCGGTA
1 CCCCTATTTGTACTTCAGTA
15347507 CC
1 CC
15347509 ACTGATTGCA
Statistics
Matches: 140, Mismatches: 45, Indels: 33
0.64 0.21 0.15
Matches are distributed among these distances:
19 9 0.06
20 129 0.92
21 2 0.01
ACGTcount: A:0.14, C:0.32, G:0.18, T:0.37
Consensus pattern (20 bp):
CCCCTATTTGTACTTCAGTA
Found at i:15347639 original size:20 final size:20
Alignment explanation
Indices: 15347616--15347671 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
15347606 GCCCATGTTT
15347616 GCACTTCGGTGCCCCTGATC
1 GCACTTCGGTGCCCCTGATC
** *
15347636 GCACATTC-GTGCTTCTGATT
1 GCAC-TTCGGTGCCCCTGATC
15347656 GCACTT-GGTGCCCCTG
1 GCACTTCGGTGCCCCTG
15347672 TTATGCATCT
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
19 9 0.31
20 17 0.59
21 3 0.10
ACGTcount: A:0.11, C:0.34, G:0.25, T:0.30
Consensus pattern (20 bp):
GCACTTCGGTGCCCCTGATC
Found at i:15363986 original size:149 final size:149
Alignment explanation
Indices: 15363813--15364103 Score: 582
Period size: 149 Copynumber: 2.0 Consensus size: 149
15363803 ACATAGGATT
15363813 AAATTATAATCTAAAGTATATTACTTAATTGAATGTGTTAGTTGGATATTTAATTTTTTTTTCTC
1 AAATTATAATCTAAAGTATATTACTTAATTGAATGTGTTAGTTGGATATTTAATTTTTTTTTCTC
15363878 AAATATTAAACAACAGAAGTAATAAATAGCATCGTCCAGAAAAAAACTAATAAATAACAAAGAAT
66 AAATATTAAACAACAGAAGTAATAAATAGCATCGTCCAGAAAAAAACTAATAAATAACAAAGAAT
15363943 CAGTGATATCACTAGAATA
131 CAGTGATATCACTAGAATA
15363962 AAATTATAATCTAAAGTATATTACTTAATTGAATGTGTTAGTTGGATATTTAATTTTTTTTTCTC
1 AAATTATAATCTAAAGTATATTACTTAATTGAATGTGTTAGTTGGATATTTAATTTTTTTTTCTC
15364027 AAATATTAAACAACAGAAGTAATAAATAGCATCGTCCAGAAAAAAACTAATAAATAACAAAGAAT
66 AAATATTAAACAACAGAAGTAATAAATAGCATCGTCCAGAAAAAAACTAATAAATAACAAAGAAT
15364092 CAGTGATATCAC
131 CAGTGATATCAC
15364104 CAACTTCTAT
Statistics
Matches: 142, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
149 142 1.00
ACGTcount: A:0.45, C:0.10, G:0.11, T:0.34
Consensus pattern (149 bp):
AAATTATAATCTAAAGTATATTACTTAATTGAATGTGTTAGTTGGATATTTAATTTTTTTTTCTC
AAATATTAAACAACAGAAGTAATAAATAGCATCGTCCAGAAAAAAACTAATAAATAACAAAGAAT
CAGTGATATCACTAGAATA
Found at i:15365432 original size:23 final size:22
Alignment explanation
Indices: 15365390--15365442 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 22
15365380 NNNNNNTTTG
*
15365390 TATTTTTTAATTAAAGTTTAATA
1 TATTTTTTAAATAAAGTTTAA-A
15365413 TATTTTTTAAAATAAA-TTTAAA
1 TATTTTTT-AAATAAAGTTTAAA
*
15365435 AATTTTTT
1 TATTTTTT
15365443 TATTTTTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 8 0.30
23 13 0.48
24 6 0.22
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (22 bp):
TATTTTTTAAATAAAGTTTAAA
Found at i:15366737 original size:16 final size:16
Alignment explanation
Indices: 15366716--15366753 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
15366706 TTTGGTTCGC
15366716 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
15366732 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
*
15366748 CGTAAT
1 TGTAAT
15366754 AGTAATTCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.37, C:0.03, G:0.34, T:0.26
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:15366799 original size:45 final size:44
Alignment explanation
Indices: 15366735--15366827 Score: 116
Period size: 44 Copynumber: 2.1 Consensus size: 44
15366725 ATAGAGGTGT
** *
15366735 AATGGAATAGAGGCGTAATAGTAATTCAAT-TGTTTGGTTGAATGG
1 AATGGAATAGAACCATAATAGT-ATTC-ATGTGTTTGGTTGAATGG
* *
15366780 AATGGAATAGAACCATAATAGTATTCTTGTGTTTGGTTGAATGT
1 AATGGAATAGAACCATAATAGTATTCATGTGTTTGGTTGAATGG
15366824 AATG
1 AATG
15366828 ATGTTGTAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
43 1 0.02
44 22 0.52
45 19 0.45
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.35
Consensus pattern (44 bp):
AATGGAATAGAACCATAATAGTATTCATGTGTTTGGTTGAATGG
Found at i:15367074 original size:20 final size:21
Alignment explanation
Indices: 15367035--15367074 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
15367025 AATTTACTAA
*
15367035 TAAAATCATAATATATAATAC
1 TAAAATCATAATATAAAATAC
*
15367056 TAAAAT-ATAATTTAAAATA
1 TAAAATCATAATATAAAATA
15367075 ATTATTATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (21 bp):
TAAAATCATAATATAAAATAC
Found at i:15367905 original size:30 final size:30
Alignment explanation
Indices: 15367871--15367929 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
15367861 CTCAGTCTTA
*
15367871 AGCCAAGATAAAGTAGGCAATACCTGAATT
1 AGCCAAGATAAAGTAGGCAATAACTGAATT
15367901 AGCCAAGATAAAGTAGGCAATAACTGAAT
1 AGCCAAGATAAAGTAGGCAATAACTGAAT
15367930 AGTGATGAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.46, C:0.15, G:0.20, T:0.19
Consensus pattern (30 bp):
AGCCAAGATAAAGTAGGCAATAACTGAATT
Found at i:15373125 original size:50 final size:49
Alignment explanation
Indices: 15373038--15373174 Score: 152
Period size: 50 Copynumber: 2.7 Consensus size: 49
15373028 GGTAAAGAGA
* * *
15373038 TCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACC-ATGATGAGAGGTC
1 TCCCA-GTAAGACCATGTCTGGGACATGGCATTGGCACCAAT-ATGAGA--AC
* *
15373090 TTCC-GTAAGACCATGTCTGGGACATGGCATGGGCACCAATATGAGAAC
1 TCCCAGTAAGACCATGTCTGGGACATGGCATTGGCACCAATATGAGAAC
* *
15373138 TCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 TCCCA-GTAAGACCATGTCTGGGACATGGCATTGGCA
15373175 GTACAGGAAA
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
48 4 0.05
50 64 0.88
51 2 0.03
52 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (49 bp):
TCCCAGTAAGACCATGTCTGGGACATGGCATTGGCACCAATATGAGAAC
Found at i:15378524 original size:37 final size:37
Alignment explanation
Indices: 15378483--15378563 Score: 117
Period size: 37 Copynumber: 2.2 Consensus size: 37
15378473 ATCTAATCGA
* * *
15378483 AACACGCTAAACTCTTATGAGAGCTAATCCAACCGAT
1 AACACGCTAAACGCTCATAAGAGCTAATCCAACCGAT
* *
15378520 AACACGCTAAACGCTCATAAGAGTTAATCCAATCGAT
1 AACACGCTAAACGCTCATAAGAGCTAATCCAACCGAT
15378557 AACACGC
1 AACACGC
15378564 CTCGGCACTA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.40, C:0.27, G:0.14, T:0.20
Consensus pattern (37 bp):
AACACGCTAAACGCTCATAAGAGCTAATCCAACCGAT
Found at i:15392481 original size:42 final size:42
Alignment explanation
Indices: 15392402--15392620 Score: 150
Period size: 48 Copynumber: 4.8 Consensus size: 42
15392392 TGGAAATATT
* * * * *
15392402 ATATCGATCCCAATAGCCCAGCTATGGTCTTACACAAAGTCTC
1 ATATCGATGCC-ATATCCCAGATATGGTCTTATACAAAATCTC
* *
15392445 ATATCGATGCCATATCCCAGATATAGCCTTATACAAAATCTC
1 ATATCGATGCCATATCCCAGATATGGTCTTATACAAAATCTC
***
15392487 ATACAATGCCGATGCCATATCCCAGATATGGTCTTATACGGGATCTC
1 AT---AT--CGATGCCATATCCCAGATATGGTCTTATACAAAATCTC
* *
15392534 AAATCGATGCTGATGCCATATCCCAGATATGGTCTTATACGAGATCTC
1 --AT--AT-C-GATGCCATATCCCAGATATGGTCTTATACAAAATCTC
* *
15392582 AAATCGACGCCGATGCCATATCCCAGGTATGGTCTTATA
1 --AT--A--TCGATGCCATATCCCAGATATGGTCTTATA
15392621 TGGGATTCAA
Statistics
Matches: 149, Mismatches: 17, Indels: 15
0.82 0.09 0.08
Matches are distributed among these distances:
42 27 0.18
43 10 0.07
45 2 0.01
47 34 0.23
48 73 0.49
49 3 0.02
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (42 bp):
ATATCGATGCCATATCCCAGATATGGTCTTATACAAAATCTC
Found at i:15392562 original size:48 final size:48
Alignment explanation
Indices: 15392449--15392633 Score: 248
Period size: 48 Copynumber: 3.9 Consensus size: 48
15392439 AGTCTCATAT
* * * * * *
15392449 CGATGCCATATCCCAGATATAGCCTTATACAAAATCTCATA-CAATGC
1 CGATGCCATATCCCAGATATGGTCTTATACGAGATCTCAAATCGATGC
*
15392496 CGATGCCATATCCCAGATATGGTCTTATACGGGATCTCAAATCGATGC
1 CGATGCCATATCCCAGATATGGTCTTATACGAGATCTCAAATCGATGC
* *
15392544 TGATGCCATATCCCAGATATGGTCTTATACGAGATCTCAAATCGACGC
1 CGATGCCATATCCCAGATATGGTCTTATACGAGATCTCAAATCGATGC
* * *
15392592 CGATGCCATATCCCAGGTATGGTCTTATATGGGAT-TCAAATC
1 CGATGCCATATCCCAGATATGGTCTTATACGAGATCTCAAATC
15392634 AATTCGGTAA
Statistics
Matches: 123, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
47 42 0.34
48 81 0.66
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.28
Consensus pattern (48 bp):
CGATGCCATATCCCAGATATGGTCTTATACGAGATCTCAAATCGATGC
Found at i:15392581 original size:95 final size:95
Alignment explanation
Indices: 15392450--15392633 Score: 271
Period size: 95 Copynumber: 1.9 Consensus size: 95
15392440 GTCTCATATC
* *
15392450 GATGCCATATCCCAGATATAGCCTTATACAAAATCTCATA-CAATGCCGATGCCATATCCCAGAT
1 GATGCCATATCCCAGATATAGCCTTATACAAAATCTCAAATCAACGCCGATGCCATATCCCAGAT
15392514 ATGGTCTTATACGGGATCTCAAATCGATGCT
66 ATGGTCTTATACGGGAT-TCAAATCGATGCT
* * * * * *
15392545 GATGCCATATCCCAGATATGGTCTTATACGAGATCTCAAATCGACGCCGATGCCATATCCCAGGT
1 GATGCCATATCCCAGATATAGCCTTATACAAAATCTCAAATCAACGCCGATGCCATATCCCAGAT
*
15392610 ATGGTCTTATATGGGATTCAAATC
66 ATGGTCTTATACGGGATTCAAATC
15392634 AATTCGGTAA
Statistics
Matches: 79, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
95 42 0.53
96 37 0.47
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (95 bp):
GATGCCATATCCCAGATATAGCCTTATACAAAATCTCAAATCAACGCCGATGCCATATCCCAGAT
ATGGTCTTATACGGGATTCAAATCGATGCT
Found at i:15392662 original size:30 final size:30
Alignment explanation
Indices: 15392628--15392722 Score: 100
Period size: 30 Copynumber: 3.1 Consensus size: 30
15392618 ATATGGGATT
*
15392628 CAAATCAATTCGGTAATATATATACATATA
1 CAAATCAATTCGGCAATATATATACATATA
* *
15392658 CAAATCAATTCGGCAATGTATATATCTACATA
1 CAAATCAATTCGGCAATATATATA-C-ATATA
* * * *
15392690 TAAATCAATTTGACAATATATAAAACATATA
1 CAAATCAATTCGGCAATATAT-ATACATATA
15392721 CA
1 CA
15392723 TTTTAATTCA
Statistics
Matches: 52, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
30 22 0.42
31 6 0.12
32 22 0.42
33 2 0.04
ACGTcount: A:0.47, C:0.15, G:0.06, T:0.32
Consensus pattern (30 bp):
CAAATCAATTCGGCAATATATATACATATA
Found at i:15399942 original size:20 final size:20
Alignment explanation
Indices: 15399917--15399955 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
15399907 TGGCACACAG
*
15399917 CTTGGCACACGGGCTTGTGA
1 CTTGGCACACGGGCATGTGA
15399937 CTTGGCACACGGGCATGTG
1 CTTGGCACACGGGCATGTG
15399956 CCCCCTACAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.15, C:0.26, G:0.36, T:0.23
Consensus pattern (20 bp):
CTTGGCACACGGGCATGTGA
Found at i:15406570 original size:18 final size:18
Alignment explanation
Indices: 15406544--15406583 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
15406534 AGGATTGCAA
* * *
15406544 ATTTTCATTTTCATTTTT
1 ATTTCCATTTCCATTTCT
15406562 ATTTCCATTTCCATTTCT
1 ATTTCCATTTCCATTTCT
15406580 ATTT
1 ATTT
15406584 TTGAAAACCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.17, C:0.17, G:0.00, T:0.65
Consensus pattern (18 bp):
ATTTCCATTTCCATTTCT
Found at i:15409953 original size:19 final size:19
Alignment explanation
Indices: 15409931--15410019 Score: 70
Period size: 19 Copynumber: 4.7 Consensus size: 19
15409921 CTGGCACATG
**
15409931 AAGTGCATCCTAGCGTACA
1 AAGTGCATCCTAGCACACA
** *
15409950 AAGTGCATTTTAGCACACG
1 AAGTGCATCCTAGCACACA
*
15409969 AAGTGCATCCTATCACACA
1 AAGTGCATCCTAGCACACA
* * * * *
15409988 AAATACATCCCAACACACG
1 AAGTGCATCCTAGCACACA
*
15410007 AAGTGTATCCTAG
1 AAGTGCATCCTAG
15410020 TGTATAAGCG
Statistics
Matches: 51, Mismatches: 19, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
19 51 1.00
ACGTcount: A:0.36, C:0.27, G:0.16, T:0.21
Consensus pattern (19 bp):
AAGTGCATCCTAGCACACA
Found at i:15417589 original size:278 final size:279
Alignment explanation
Indices: 15417275--15417829 Score: 1103
Period size: 278 Copynumber: 2.0 Consensus size: 279
15417265 ATTATAAATT
15417275 AAGTAAATAAAAAAATTGATTTGATACAGATAATAGAAGTTTTTTTATCTAGTGAACTGAAAACT
1 AAGTAAATAAAAAAATTGATTTGATACAGATAATAGAAGTTTTTTTATCTAGTGAACTGAAAACT
15417340 GAACCGCATAGATTTAAGTACTAACCAAACTGAAAGTGAACCAAACACTGTGGTTCAAATCAATT
66 GAACCGCATAGATTTAAGTACTAACCAAACTGAAAGTGAACCAAACACTGTGGTTCAAATCAATT
15417405 TTCAATTTTCTTGGTTTTTTTGCTCAGCCCTATTGGAAAGATGTGTAATTTTTTGCTTTAGGGAT
131 TTCAATTTTCTTGGTTTTTTTGCTCAGCCCTATTGGAAAGATGTGTAATTTTTTGCTTTAGGGAT
15417470 GATAAATTTTCAATTGAGAATTTTTTATCCATAGGAAGGAAGAACTAAGCTGAGAACTCTAGTGA
196 GATAAATTTTCAATTGAGAATTTTTTATCCATAGGAAGGAAGAACTAAGCTGAGAACTCTAGTGA
15417535 AATCGAGGGAGAGAGAATC
261 AATCGAGGGAGAGAGAATC
15417554 AAGTAAA-AAAAAAATTGATTTGATACAGATAATAGAAGTTTTTTTATCTAGTGAACTGAAAACT
1 AAGTAAATAAAAAAATTGATTTGATACAGATAATAGAAGTTTTTTTATCTAGTGAACTGAAAACT
15417618 GAACCGCATAGATTTAAGTACTAACCAAACTGAAAGTGAACCAAACACTGTGGTTCAAATCAATT
66 GAACCGCATAGATTTAAGTACTAACCAAACTGAAAGTGAACCAAACACTGTGGTTCAAATCAATT
15417683 TTCAATTTTCTTGGTTTTTTTGCTCAGCCCTATTGGAAAGATGTGTAATTTTTTGCTTTAGGGAT
131 TTCAATTTTCTTGGTTTTTTTGCTCAGCCCTATTGGAAAGATGTGTAATTTTTTGCTTTAGGGAT
15417748 GATAAATTTTCAATTGAGAATTTTTTATCCATAGGAAGGAAGAACTAAGCTGAGAACTCTAGTGA
196 GATAAATTTTCAATTGAGAATTTTTTATCCATAGGAAGGAAGAACTAAGCTGAGAACTCTAGTGA
15417813 AATCGAGGGAGAGAGAA
261 AATCGAGGGAGAGAGAA
15417830 AGAGGAAGAA
Statistics
Matches: 276, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
278 269 0.97
279 7 0.03
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.32
Consensus pattern (279 bp):
AAGTAAATAAAAAAATTGATTTGATACAGATAATAGAAGTTTTTTTATCTAGTGAACTGAAAACT
GAACCGCATAGATTTAAGTACTAACCAAACTGAAAGTGAACCAAACACTGTGGTTCAAATCAATT
TTCAATTTTCTTGGTTTTTTTGCTCAGCCCTATTGGAAAGATGTGTAATTTTTTGCTTTAGGGAT
GATAAATTTTCAATTGAGAATTTTTTATCCATAGGAAGGAAGAACTAAGCTGAGAACTCTAGTGA
AATCGAGGGAGAGAGAATC
Found at i:15420637 original size:20 final size:20
Alignment explanation
Indices: 15420599--15420650 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
15420589 TGGTAAAGTC
* *
15420599 AATATTGATAGATCCTTAGA
1 AATATTGGTAAATCCTTAGA
*
15420619 AATATTGGTAAATCGTTAGA
1 AATATTGGTAAATCCTTAGA
* *
15420639 TATTTTGGTAAA
1 AATATTGGTAAA
15420651 AGCTTTTTCT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.38, C:0.06, G:0.17, T:0.38
Consensus pattern (20 bp):
AATATTGGTAAATCCTTAGA
Found at i:15432710 original size:16 final size:16
Alignment explanation
Indices: 15432689--15432727 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
15432679 ATCCCTAAAA
*
15432689 TCTAAATCCTTACCAT
1 TCTAAATCCCTACCAT
*
15432705 TCTAAATCCCTACGAT
1 TCTAAATCCCTACCAT
15432721 T-TAAATC
1 TCTAAATC
15432728 AAACCCCCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 6 0.29
16 15 0.71
ACGTcount: A:0.33, C:0.28, G:0.03, T:0.36
Consensus pattern (16 bp):
TCTAAATCCCTACCAT
Found at i:15453074 original size:45 final size:45
Alignment explanation
Indices: 15453017--15453256 Score: 284
Period size: 45 Copynumber: 5.4 Consensus size: 45
15453007 TTATAGTGGA
* * * * * *
15453017 AACGTGTAAGACCACAGCCGAAAGGTGTTATAGCATCATGATTTT
1 AACGAGTAAGACCATAGCTGAAAGATGTTATGGCATCACGATTTT
* ** * ** *
15453062 AACGATTAAGACCATAGCTGAAAGACATTATGGCAGCATAATTTA
1 AACGAGTAAGACCATAGCTGAAAGATGTTATGGCATCACGATTTT
*
15453107 AACGAGTAAGACCATAGCTGAAAGATGTTGTGGCATCACGATTTT
1 AACGAGTAAGACCATAGCTGAAAGATGTTATGGCATCACGATTTT
* *
15453152 AAC-AGTAAGACCATAGCTGAAAGATGTTATTGTATCACGATTTT
1 AACGAGTAAGACCATAGCTGAAAGATGTTATGGCATCACGATTTT
* * ** *
15453196 AACAAGTAAGACCATAGCTAAAAGACATTATGGCATCACGATTCT
1 AACGAGTAAGACCATAGCTGAAAGATGTTATGGCATCACGATTTT
15453241 AACGAGTAAGACCATA
1 AACGAGTAAGACCATA
15453257 TCTAAAAGGC
Statistics
Matches: 165, Mismatches: 29, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
44 41 0.25
45 124 0.75
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (45 bp):
AACGAGTAAGACCATAGCTGAAAGATGTTATGGCATCACGATTTT
Found at i:15453095 original size:90 final size:89
Alignment explanation
Indices: 15452985--15453175 Score: 229
Period size: 90 Copynumber: 2.1 Consensus size: 89
15452975 GAATAAAACT
* ** * * *
15452985 ATAGTTGAAAGAAACTATGGCATTATAGTGGAAACGTGTAAGACCACAGCCGAAAGGTGTTATAG
1 ATAGCTGAAAGAAACTATGGCAGCATAATGGAAACGAGTAAGACCACAGCCGAAAGATGTTATAG
* *
15453050 CATCATGATTTTAACGATTAAGACC
66 CATCACGATTTTAAC-AGTAAGACC
* * ** * * * *
15453075 ATAGCTGAAAGACATTATGGCAGCATAATTTAAACGAGTAAGACCATAGCTGAAAGATGTTGTGG
1 ATAGCTGAAAGAAACTATGGCAGCATAATGGAAACGAGTAAGACCACAGCCGAAAGATGTTATAG
15453140 CATCACGATTTTAACAGTAAGACC
66 CATCACGATTTTAACAGTAAGACC
15453164 ATAGCTGAAAGA
1 ATAGCTGAAAGA
15453176 TGTTATTGTA
Statistics
Matches: 85, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
89 20 0.24
90 65 0.76
ACGTcount: A:0.39, C:0.15, G:0.22, T:0.25
Consensus pattern (89 bp):
ATAGCTGAAAGAAACTATGGCAGCATAATGGAAACGAGTAAGACCACAGCCGAAAGATGTTATAG
CATCACGATTTTAACAGTAAGACC
Found at i:15453210 original size:89 final size:90
Alignment explanation
Indices: 15453022--15453256 Score: 283
Period size: 89 Copynumber: 2.6 Consensus size: 90
15453012 GTGGAAACGT
* * * * * *
15453022 GTAAGACCACAGCCGAAAGGTGTTATAGCATCATGATTTTAACGATTAAGACCATAGCTGAAAGA
1 GTAAGACCATAGCTGAAAGATGTTATGGCATCACGATTTTAACGAGTAAGACCATAGCTGAAAGA
* *
15453087 CATTATGGCAGCATAATTTAAACGA
66 CATTATGGCAGCACAATTTAAACAA
*
15453112 GTAAGACCATAGCTGAAAGATGTTGTGGCATCACGATTTTAAC-AGTAAGACCATAGCTGAAAGA
1 GTAAGACCATAGCTGAAAGATGTTATGGCATCACGATTTTAACGAGTAAGACCATAGCTGAAAGA
** * * * * *
15453176 TGTTATTGTATCACGATTTTAACAA
66 CATTATGGCAGCACAATTTAAACAA
* ** *
15453201 GTAAGACCATAGCTAAAAGACATTATGGCATCACGATTCTAACGAGTAAGACCATA
1 GTAAGACCATAGCTGAAAGATGTTATGGCATCACGATTTTAACGAGTAAGACCATA
15453257 TCTAAAAGGC
Statistics
Matches: 123, Mismatches: 21, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
89 74 0.60
90 49 0.40
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.26
Consensus pattern (90 bp):
GTAAGACCATAGCTGAAAGATGTTATGGCATCACGATTTTAACGAGTAAGACCATAGCTGAAAGA
CATTATGGCAGCACAATTTAAACAA
Found at i:15453277 original size:134 final size:134
Alignment explanation
Indices: 15453022--15453278 Score: 327
Period size: 134 Copynumber: 1.9 Consensus size: 134
15453012 GTGGAAACGT
* * * * *
15453022 GTAAGACCACAGCCGAAAGGTGTTATAGCATCATGATTTTAACGATTAAGACCATAGCTGAAAGA
1 GTAAGACCACAGCCGAAAGATGTTATAGCATCACGATTTTAACAAGTAAGACCATAGCTAAAAGA
* * * * * *
15453087 CATTATGGCAGCATAATTTAAACGAGTAAGACCATAGCTGAAAGATGTTGTGGCATCACGATTTT
66 CATTATGGCAGCACAATTTAAACGAGTAAGACCATAGCTAAAAGACGCTATAGCATCACGATTTT
15453152 AACA
131 AACA
* * * *
15453156 GTAAGACCATAGCTGAAAGATGTTATTGTATCACGATTTTAACAAGTAAGACCATAGCTAAAAGA
1 GTAAGACCACAGCCGAAAGATGTTATAGCATCACGATTTTAACAAGTAAGACCATAGCTAAAAGA
* * * *
15453221 CATTATGGCATCACGATTCT-AACGAGTAAGACCATATCTAAAAGGCGCTATAGCATCA
66 CATTATGGCAGCACAATT-TAAACGAGTAAGACCATAGCTAAAAGACGCTATAGCATCA
15453279 TAAATCAGAC
Statistics
Matches: 103, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
134 102 0.99
135 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.25
Consensus pattern (134 bp):
GTAAGACCACAGCCGAAAGATGTTATAGCATCACGATTTTAACAAGTAAGACCATAGCTAAAAGA
CATTATGGCAGCACAATTTAAACGAGTAAGACCATAGCTAAAAGACGCTATAGCATCACGATTTT
AACA
Found at i:15453322 original size:45 final size:45
Alignment explanation
Indices: 15453202--15453322 Score: 120
Period size: 45 Copynumber: 2.7 Consensus size: 45
15453192 TTTTAACAAG
* * * * *
15453202 TAAGACCATAGCTAAAAGACATTATGGCATCACGATTCTAACGAG
1 TAAGACCATATCTAAAAGACACTATGGCATCACAAATCTAACGAA
* * * *
15453247 TAAGACCATATCTAAAAGGCGCTATAGCATCATAAATC-AGACGAA
1 TAAGACCATATCTAAAAGACACTATGGCATCACAAATCTA-ACGAA
*
15453292 TAAGACCATGAT-TGAAAGACACTATGGCATC
1 TAAGACCAT-ATCTAAAAGACACTATGGCATC
15453323 CTTCAACCAT
Statistics
Matches: 61, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
44 1 0.02
45 58 0.95
46 2 0.03
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.21
Consensus pattern (45 bp):
TAAGACCATATCTAAAAGACACTATGGCATCACAAATCTAACGAA
Found at i:15464581 original size:50 final size:50
Alignment explanation
Indices: 15464506--15464600 Score: 163
Period size: 50 Copynumber: 1.9 Consensus size: 50
15464496 TGATAGTTGT
*
15464506 TAAATTCGGTTTTAGAGTTCATCTTAGGTAGGATTTGTACGAATATTGAC
1 TAAATTCGGTTTTAGAATTCATCTTAGGTAGGATTTGTACGAATATTGAC
* *
15464556 TAAATTTGGTTTTAGAATTCATCTTAGGTAGGATTTGTATGAATA
1 TAAATTCGGTTTTAGAATTCATCTTAGGTAGGATTTGTACGAATA
15464601 CTAACTTAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.42
Consensus pattern (50 bp):
TAAATTCGGTTTTAGAATTCATCTTAGGTAGGATTTGTACGAATATTGAC
Found at i:15465709 original size:19 final size:19
Alignment explanation
Indices: 15465687--15465725 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
15465677 CCCACGCGTG
* *
15465687 ATCCGGCCTGTCTGGGAGA
1 ATCCGACCTGCCTGGGAGA
15465706 ATCCGACCTGCCTGGGAGA
1 ATCCGACCTGCCTGGGAGA
15465725 A
1 A
15465726 CCCGTGTGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.21, C:0.28, G:0.33, T:0.18
Consensus pattern (19 bp):
ATCCGACCTGCCTGGGAGA
Found at i:15479189 original size:26 final size:26
Alignment explanation
Indices: 15479160--15479218 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
15479150 TATTTTCTCG
**
15479160 AAATTTT-TTCAAGGATAAAATTGTCA
1 AAATTTTATT-AAGGATAAAATCATCA
*
15479186 AAATTTTATTAGGGATAAAATCATCA
1 AAATTTTATTAAGGATAAAATCATCA
15479212 AAATTTT
1 AAATTTT
15479219 GTTTGGGGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 27 0.93
27 2 0.07
ACGTcount: A:0.44, C:0.07, G:0.10, T:0.39
Consensus pattern (26 bp):
AAATTTTATTAAGGATAAAATCATCA
Found at i:15489221 original size:13 final size:13
Alignment explanation
Indices: 15489205--15489229 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15489195 TATTTGAAAG
15489205 TTTTATTATTATA
1 TTTTATTATTATA
15489218 TTTTATTATTAT
1 TTTTATTATTAT
15489230 TTATATAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTTATTATTATA
Found at i:15489919 original size:32 final size:32
Alignment explanation
Indices: 15489855--15489921 Score: 84
Period size: 32 Copynumber: 2.1 Consensus size: 32
15489845 AGCAATTTAA
* *
15489855 TTTTTTTTCTTTTATGTTCTTTGTACTTTCCT
1 TTTTTTTTCTTTTATGTTCATTCTACTTTCCT
15489887 TTTTTTTTCTTTATAT-TTCATTCT-CTTCTCCT
1 TTTTTTTTCTTT-TATGTTCATTCTACTT-TCCT
15489919 TTT
1 TTT
15489922 ACCTCTGCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
31 3 0.10
32 25 0.81
33 3 0.10
ACGTcount: A:0.07, C:0.18, G:0.03, T:0.72
Consensus pattern (32 bp):
TTTTTTTTCTTTTATGTTCATTCTACTTTCCT
Found at i:15490053 original size:19 final size:21
Alignment explanation
Indices: 15490031--15490070 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
15490021 TATTTATTTG
15490031 TTTTCA-TTTTCT-TCTTCCC
1 TTTTCATTTTTCTCTCTTCCC
*
15490050 TTTTTATTTTTCTCTCTTCCC
1 TTTTCATTTTTCTCTCTTCCC
15490071 ATATTTTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 6 0.33
21 7 0.39
ACGTcount: A:0.05, C:0.30, G:0.00, T:0.65
Consensus pattern (21 bp):
TTTTCATTTTTCTCTCTTCCC
Found at i:15494051 original size:2 final size:2
Alignment explanation
Indices: 15494044--15494080 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
15494034 ACTAGACTTC
15494044 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
15494081 CCACACTTGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:15504073 original size:25 final size:24
Alignment explanation
Indices: 15504025--15504180 Score: 181
Period size: 25 Copynumber: 6.4 Consensus size: 24
15504015 TCATTAGGGG
*
15504025 TTACCGATTTCAGCTTGTGA-GAGC
1 TTACCGATTTCAGCTCGT-ATGAGC
15504049 TTACCGATTCTCAGCTCGTATGAGC
1 TTACCGATT-TCAGCTCGTATGAGC
*
15504074 TTATCGATTTCAGCTCGTATGAGC
1 TTACCGATTTCAGCTCGTATGAGC
* *
15504098 TTACCGATTTCAACTCGTAAGAGC
1 TTACCGATTTCAGCTCGTATGAGC
* *
15504122 TTACCAATTCTCAGCTCATATGAGC
1 TTACCGATT-TCAGCTCGTATGAGC
*
15504147 TTACCGATTTATAGCTCGTGA-GAGC
1 TTACCGATTT-CAGCTCGT-ATGAGC
*
15504172 ATACCGATT
1 TTACCGATT
15504181 CATAGCTCAT
Statistics
Matches: 114, Mismatches: 13, Indels: 9
0.84 0.10 0.07
Matches are distributed among these distances:
24 55 0.48
25 58 0.51
26 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (24 bp):
TTACCGATTTCAGCTCGTATGAGC
Found at i:15504101 original size:49 final size:48
Alignment explanation
Indices: 15504025--15504180 Score: 181
Period size: 49 Copynumber: 3.2 Consensus size: 48
15504015 TCATTAGGGG
* * *
15504025 TTACCGATTTCAGCTTGTGA-GAGCTTACCGATTCTCAGCTCGTATGAGC
1 TTACCGATTTCAGCTCGT-ATGAGCTTACCGATT-TCAACTCGTAAGAGC
*
15504074 TTATCGATTTCAGCTCGTATGAGCTTACCGATTTCAACTCGTAAGAGC
1 TTACCGATTTCAGCTCGTATGAGCTTACCGATTTCAACTCGTAAGAGC
* * *
15504122 TTACCAATTCTCAGCTCATATGAGCTTACCGATTT-ATAGCTCGTGAGAGC
1 TTACCGATT-TCAGCTCGTATGAGCTTACCGATTTCA-A-CTCGTAAGAGC
*
15504172 ATACCGATT
1 TTACCGATT
15504181 CATAGCTCAT
Statistics
Matches: 93, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
48 22 0.24
49 54 0.58
50 17 0.18
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (48 bp):
TTACCGATTTCAGCTCGTATGAGCTTACCGATTTCAACTCGTAAGAGC
Found at i:15504144 original size:73 final size:74
Alignment explanation
Indices: 15504025--15504180 Score: 217
Period size: 73 Copynumber: 2.1 Consensus size: 74
15504015 TCATTAGGGG
* * * * * *
15504025 TTACCGATTTCAGCTTGTGAGAGCTTACCGATTCTCAGCTCGTATGAGCTTATCGATTT-CAGCT
1 TTACCGATTTCAACTCGTAAGAGCTTACCAATTCTCAGCTCATATGAGCTTACCGATTTACAGCT
15504089 CGT-ATGAGC
66 CGTGA-GAGC
*
15504098 TTACCGATTTCAACTCGTAAGAGCTTACCAATTCTCAGCTCATATGAGCTTACCGATTTATAGCT
1 TTACCGATTTCAACTCGTAAGAGCTTACCAATTCTCAGCTCATATGAGCTTACCGATTTACAGCT
15504163 CGTGAGAGC
66 CGTGAGAGC
*
15504172 ATACCGATT
1 TTACCGATT
15504181 CATAGCTCAT
Statistics
Matches: 73, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
73 53 0.73
74 19 0.26
75 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (74 bp):
TTACCGATTTCAACTCGTAAGAGCTTACCAATTCTCAGCTCATATGAGCTTACCGATTTACAGCT
CGTGAGAGC
Found at i:15504188 original size:50 final size:49
Alignment explanation
Indices: 15504045--15504196 Score: 166
Period size: 49 Copynumber: 3.1 Consensus size: 49
15504035 CAGCTTGTGA
* * * * * *
15504045 GAGCTTACCGATTCTCAGCTCGTATGAGCTTATCGATT-TCAGCTCGTAT
1 GAGCTTACCGATT-TCAACTCGTAAGAGCATACCAATTCTCAGCTCATAT
*
15504094 GAGCTTACCGATTTCAACTCGTAAGAGCTTACCAATTCTCAGCTCATAT
1 GAGCTTACCGATTTCAACTCGTAAGAGCATACCAATTCTCAGCTCATAT
* *
15504143 GAGCTTACCGATTT-ATAGCTCGTGAGAGCATACCGATTCAT-AGCTCATAT
1 GAGCTTACCGATTTCA-A-CTCGTAAGAGCATACCAATTC-TCAGCTCATAT
15504193 GAGC
1 GAGC
15504197 ATACATGTAC
Statistics
Matches: 91, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
48 21 0.23
49 38 0.42
50 31 0.34
51 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (49 bp):
GAGCTTACCGATTTCAACTCGTAAGAGCATACCAATTCTCAGCTCATAT
Found at i:15504870 original size:20 final size:20
Alignment explanation
Indices: 15504837--15504880 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
15504827 TAATGAGAGT
*
15504837 AAATGCAATAGAAAGTAACA
1 AAATGCAATAGAAAATAACA
*
15504857 AAATGCAA-ATGAAAATAAGA
1 AAATGCAATA-GAAAATAACA
15504877 AAAT
1 AAAT
15504881 TTGAAAGGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 1 0.05
20 20 0.95
ACGTcount: A:0.64, C:0.07, G:0.14, T:0.16
Consensus pattern (20 bp):
AAATGCAATAGAAAATAACA
Found at i:15506411 original size:20 final size:21
Alignment explanation
Indices: 15506386--15506424 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
15506376 CTACATTTTG
*
15506386 AAAATTTTTATAT-TTTCCCT
1 AAAATTTCTATATGTTTCCCT
15506406 AAAATTTCTATATGTTTCC
1 AAAATTTCTATATGTTTCC
15506425 GATTTAGTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.31, C:0.15, G:0.03, T:0.51
Consensus pattern (21 bp):
AAAATTTCTATATGTTTCCCT
Found at i:15507438 original size:20 final size:21
Alignment explanation
Indices: 15507401--15507442 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
15507391 TTCCTCAGCA
*
15507401 TCGAACACGATCGTCCACCAC
1 TCGAACACGATCGACCACCAC
15507422 TCGAACAC-ATCGACCACCAC
1 TCGAACACGATCGACCACCAC
15507442 T
1 T
15507443 TGATGAACCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.31, C:0.43, G:0.12, T:0.14
Consensus pattern (21 bp):
TCGAACACGATCGACCACCAC
Found at i:15510005 original size:40 final size:39
Alignment explanation
Indices: 15509958--15510098 Score: 194
Period size: 40 Copynumber: 3.5 Consensus size: 39
15509948 GGCGTTTGGA
15509958 CAAAAAACGCCGCTAAAAATCGAGCATTAGCGGCGCTTT
1 CAAAAAACGCCGCTAAAAATCGAGCATTAGCGGCGCTTT
* *
15509997 ACATAAAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTT
1 -CAAAAAACGCCGCTAAAAATCGAGCATTAGCGGCGCTTT
* *
15510037 CAGAAAAGCGCCGCTAAAAAT-GAGCATTAGCGGCGTTTTTT
1 CA-AAAAACGCCGCTAAAAATCGAGCATTAGCGGCG--CTTT
*
15510078 GAAAAAACGCCGCTAAAAATC
1 CAAAAAACGCCGCTAAAAATC
15510099 TAAGCCCACA
Statistics
Matches: 89, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
39 16 0.18
40 69 0.78
41 4 0.04
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.19
Consensus pattern (39 bp):
CAAAAAACGCCGCTAAAAATCGAGCATTAGCGGCGCTTT
Found at i:15510199 original size:41 final size:41
Alignment explanation
Indices: 15510136--15510329 Score: 234
Period size: 41 Copynumber: 4.7 Consensus size: 41
15510126 ACCTTTCGGG
* * *
15510136 GCTTTAGCGGCGTTTTTTAAAAAGCGTCGCTGATGCTCAGA
1 GCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGA
*
15510177 TCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGA
1 GCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGA
* * *
15510218 TCTTTAGCGGCGCTTTTTCAAAAA-CGCCGCTAATGCTC-GG
1 GCTTTAGCGGCG-TTTTTGAAAAAGCGCCGCTAATGCTCAGA
* *
15510258 GCTTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGCTTAG-
1 GC-TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGA
*
15510299 GCTTTTAGCGGCGTTTAT-AGAAAAGCGCCGC
1 GC-TTTAGCGGCGTTTTTGA-AAAAGCGCCGC
15510330 AAAAATATTT
Statistics
Matches: 136, Mismatches: 12, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
40 13 0.10
41 112 0.82
42 11 0.08
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (41 bp):
GCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGA
Found at i:15510742 original size:7 final size:7
Alignment explanation
Indices: 15510730--15510755 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
15510720 ACAGTAAGGC
15510730 GTTAGGG
1 GTTAGGG
15510737 GTTAGGG
1 GTTAGGG
15510744 GTTAGGG
1 GTTAGGG
15510751 GTTAG
1 GTTAG
15510756 AGATTAAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.54, T:0.31
Consensus pattern (7 bp):
GTTAGGG
Found at i:15510876 original size:13 final size:13
Alignment explanation
Indices: 15510851--15510888 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
15510841 TATTAAATAA
15510851 GGTTTAGGGGTTAG
1 GGTTTA-GGGTTAG
15510865 GGATTT-GGGTTAG
1 GG-TTTAGGGTTAG
15510878 GGTTTAGGGTT
1 GGTTTAGGGTT
15510889 TAGATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 14 0.64
14 2 0.09
15 3 0.14
ACGTcount: A:0.13, C:0.00, G:0.47, T:0.39
Consensus pattern (13 bp):
GGTTTAGGGTTAG
Found at i:15510886 original size:74 final size:76
Alignment explanation
Indices: 15510799--15510942 Score: 202
Period size: 74 Copynumber: 1.9 Consensus size: 76
15510789 TCGGTATCAA
* * *
15510799 GTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAA-TT-TATATTAAATAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
15510862 TAGGGATTTGG
66 TAGGGATTTGG
* * * **
15510873 GTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
15510938 TAGGG
66 TAGGG
15510943 GTTAGGGGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
74 31 0.52
75 2 0.03
76 27 0.45
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.44
Consensus pattern (76 bp):
GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
TAGGGATTTGG
Found at i:15510942 original size:7 final size:7
Alignment explanation
Indices: 15510930--15510954 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
15510920 TAAAGAAGGT
15510930 TTAGGGG
1 TTAGGGG
15510937 TTAGGGG
1 TTAGGGG
15510944 TTAGGGG
1 TTAGGGG
15510951 TTAG
1 TTAG
15510955 AGATTAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:15511071 original size:199 final size:199
Alignment explanation
Indices: 15510731--15511244 Score: 1021
Period size: 199 Copynumber: 2.6 Consensus size: 199
15510721 CAGTAAGGCG
15510731 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
15510796 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
15510861 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
15510926 AGGT
196 AGGT
15510930 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
15510995 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
15511060 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
131 TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
15511125 AGGT
196 AGGT
15511129 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
1 TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
15511194 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTAT-TTAAA
66 CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAA
15511245 AAATTATTTA
Statistics
Matches: 315, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
198 5 0.02
199 310 0.98
ACGTcount: A:0.29, C:0.02, G:0.28, T:0.41
Consensus pattern (199 bp):
TTAGGGGTTAGGGGTTAGGGGTTAGAGATTAAGAGTTAGGGATTTAAGGTTTATAGATTCGGTAT
CAAGTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAATTTATATTAAATAAGGTTTAGGGG
TTAGGGATTTGGGTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGA
AGGT
Found at i:15511075 original size:13 final size:13
Alignment explanation
Indices: 15511050--15511087 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
15511040 TATTAAATAA
15511050 GGTTTAGGGGTTAG
1 GGTTTA-GGGTTAG
15511064 GGATTT-GGGTTAG
1 GG-TTTAGGGTTAG
15511077 GGTTTAGGGTT
1 GGTTTAGGGTT
15511088 TAGATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 14 0.64
14 2 0.09
15 3 0.14
ACGTcount: A:0.13, C:0.00, G:0.47, T:0.39
Consensus pattern (13 bp):
GGTTTAGGGTTAG
Found at i:15511108 original size:74 final size:76
Alignment explanation
Indices: 15510998--15511141 Score: 202
Period size: 74 Copynumber: 1.9 Consensus size: 76
15510988 TCGGTATCAA
* * *
15510998 GTTAAGGTTTAGGGTTTAGATTAACTAGTGCATTTTAA-TT-TATATTAAATAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
15511061 TAGGGATTTGG
66 TAGGGATTTGG
* * * **
15511072 GTTAGGGTTTAGGGTTTAGATTTATTAATATTTTTTAATTTATATATTAAAGAAGGTTTAGGGGT
1 GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
15511137 TAGGG
66 TAGGG
15511142 GTTAGGGGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
74 31 0.52
75 2 0.03
76 27 0.45
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.44
Consensus pattern (76 bp):
GTTAAGGTTTAGGGTTTAGATTAACTAATACATTTTAATTTATATATTAAAGAAGGTTTAGGGGT
TAGGGATTTGG
Found at i:15511141 original size:7 final size:7
Alignment explanation
Indices: 15511129--15511153 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
15511119 TAAAGAAGGT
15511129 TTAGGGG
1 TTAGGGG
15511136 TTAGGGG
1 TTAGGGG
15511143 TTAGGGG
1 TTAGGGG
15511150 TTAG
1 TTAG
15511154 AGATTAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:15515422 original size:41 final size:41
Alignment explanation
Indices: 15515360--15515448 Score: 124
Period size: 41 Copynumber: 2.2 Consensus size: 41
15515350 TTTTATTATT
* * * *
15515360 AGCGACGCTTTTTTAAAAACGCCGCTAAAGGCACGAGCATA
1 AGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCACGAGCATA
* *
15515401 AGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCCGAGCATT
1 AGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCACGAGCATA
15515442 AGCGGCG
1 AGCGGCG
15515449 TTTTTGAAGG
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.29, C:0.29, G:0.25, T:0.17
Consensus pattern (41 bp):
AGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCACGAGCATA
Found at i:15515515 original size:69 final size:68
Alignment explanation
Indices: 15515387--15515517 Score: 226
Period size: 69 Copynumber: 1.9 Consensus size: 68
15515377 AACGCCGCTA
*
15515387 AAGGCACGAGCATAAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCGGCGTTT
1 AAGGCACGAGCATAAGCGGCGCTTTCTCAAAAACACCGCTAAAGCCCCGAGCATTAGCGGCGTTT
15515452 TTG
66 TTG
* *
15515455 AAGGCCCGAGCATTAGCGGCGCTTTCTCAAAAAACACCGCTAAAGCCCCGAGCATTAGCGGCG
1 AAGGCACGAGCATAAGCGGCGCTTTCTC-AAAAACACCGCTAAAGCCCCGAGCATTAGCGGCG
15515518 CTTTCTCAAA
Statistics
Matches: 59, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
68 26 0.44
69 33 0.56
ACGTcount: A:0.27, C:0.30, G:0.26, T:0.17
Consensus pattern (68 bp):
AAGGCACGAGCATAAGCGGCGCTTTCTCAAAAACACCGCTAAAGCCCCGAGCATTAGCGGCGTTT
TTG
Found at i:15515541 original size:41 final size:41
Alignment explanation
Indices: 15515459--15515580 Score: 217
Period size: 41 Copynumber: 3.0 Consensus size: 41
15515449 TTTTTGAAGG
15515459 CCCGAGCATTAGCGGCGCTTTCTCAAAAAACACCGCTAAAGC
1 CCCGAGCATTAGCGGCGCTTTCTC-AAAAACACCGCTAAAGC
15515501 CCCGAGCATTAGCGGCGCTTTCTCAAAAACACCGCTAAAGC
1 CCCGAGCATTAGCGGCGCTTTCTCAAAAACACCGCTAAAGC
* *
15515542 CCCGAGCATTAGCAGCGCTTTCTCAAAAACGCCGCTAAA
1 CCCGAGCATTAGCGGCGCTTTCTCAAAAACACCGCTAAA
15515581 TGCCTCAAAA
Statistics
Matches: 78, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
41 54 0.69
42 24 0.31
ACGTcount: A:0.30, C:0.34, G:0.19, T:0.17
Consensus pattern (41 bp):
CCCGAGCATTAGCGGCGCTTTCTCAAAAACACCGCTAAAGC
Found at i:15515549 original size:110 final size:109
Alignment explanation
Indices: 15515357--15515554 Score: 315
Period size: 110 Copynumber: 1.8 Consensus size: 109
15515347 AGATTTTATT
** * * *
15515357 ATTAGCGACGCTTTTTTAAAAACGCCGCTAAAGGCACGAGCATAAGCGGCGCTTTCTCAAAAACG
1 ATTAGCGACGCTTTTCAAAAAACACCGCTAAAGCCACGAGCATAAGCGGCGCTTTCTCAAAAACA
15515422 CCGCTAAAGCCCCGAGCATTAGCGGCGTTTTTGAAGGCCCGAGC
66 CCGCTAAAGCCCCGAGCATTAGCGGCGTTTTTGAAGGCCCGAGC
* * *
15515466 ATTAGCGGCGCTTTCTCAAAAAACACCGCTAAAGCCCCGAGCATTAGCGGCGCTTTCTCAAAAAC
1 ATTAGCGACGCTTT-TCAAAAAACACCGCTAAAGCCACGAGCATAAGCGGCGCTTTCTCAAAAAC
15515531 ACCGCTAAAGCCCCGAGCATTAGC
65 ACCGCTAAAGCCCCGAGCATTAGC
15515555 AGCGCTTTCT
Statistics
Matches: 80, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
109 13 0.16
110 67 0.84
ACGTcount: A:0.29, C:0.30, G:0.22, T:0.19
Consensus pattern (109 bp):
ATTAGCGACGCTTTTCAAAAAACACCGCTAAAGCCACGAGCATAAGCGGCGCTTTCTCAAAAACA
CCGCTAAAGCCCCGAGCATTAGCGGCGTTTTTGAAGGCCCGAGC
Found at i:15515714 original size:38 final size:41
Alignment explanation
Indices: 15515644--15515735 Score: 111
Period size: 38 Copynumber: 2.3 Consensus size: 41
15515634 TCTTGGAAAA
* * * *
15515644 CGCCGCTAATACT-TATGTTTAGCGGCGTTTTTA-G-AATG
1 CGCCGCTAATGCTCGATCTTTAGCGGCGTTTTTACGTAAAG
15515682 CGCCGCTAATGCTCGATCTTTAGCGGCG-TTTTACGTAAAG
1 CGCCGCTAATGCTCGATCTTTAGCGGCGTTTTTACGTAAAG
*
15515722 GGCCGCTAATGCTC
1 CGCCGCTAATGCTC
15515736 AATTTCTAGT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
38 17 0.37
39 13 0.28
40 16 0.35
ACGTcount: A:0.20, C:0.24, G:0.25, T:0.32
Consensus pattern (41 bp):
CGCCGCTAATGCTCGATCTTTAGCGGCGTTTTTACGTAAAG
Found at i:15518625 original size:14 final size:15
Alignment explanation
Indices: 15518606--15518642 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
15518596 AGCTCAATCA
15518606 ATTTTTTTAT-TTTC
1 ATTTTTTTATCTTTC
15518620 ATTTTTTT-TCTTTC
1 ATTTTTTTATCTTTC
*
15518634 TTTTTTTTA
1 ATTTTTTTA
15518643 GAACAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
13 1 0.05
14 19 0.95
ACGTcount: A:0.11, C:0.08, G:0.00, T:0.81
Consensus pattern (15 bp):
ATTTTTTTATCTTTC
Found at i:15521260 original size:11 final size:11
Alignment explanation
Indices: 15521174--15521272 Score: 55
Period size: 11 Copynumber: 9.2 Consensus size: 11
15521164 CTTTAAAGCT
*
15521174 AATAACAATAA
1 AATAATAATAA
*
15521185 AGTAATAACT-A
1 AATAATAA-TAA
*
15521196 AAT-CTAATAGA
1 AATAATAATA-A
* *
15521207 AATACTAAGAA
1 AATAATAATAA
15521218 AATAA-AATAA
1 AATAATAATAA
* *
15521228 TATCAATAAGAA
1 AAT-AATAATAA
*
15521240 AACAAT--TAA
1 AATAATAATAA
15521249 AATAATAATAA
1 AATAATAATAA
*
15521260 AATAATAACAA
1 AATAATAATAA
15521271 AA
1 AA
15521273 GAAAAGAAAA
Statistics
Matches: 66, Mismatches: 14, Indels: 16
0.69 0.15 0.17
Matches are distributed among these distances:
9 8 0.12
10 9 0.14
11 38 0.58
12 11 0.17
ACGTcount: A:0.67, C:0.07, G:0.04, T:0.22
Consensus pattern (11 bp):
AATAATAATAA
Found at i:15533444 original size:18 final size:17
Alignment explanation
Indices: 15533423--15533457 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
15533413 TTATTATTAA
*
15533423 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
15533441 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
15533458 TCTNNNNNNN
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:15536418 original size:6 final size:6
Alignment explanation
Indices: 15536409--15536443 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
15536399 TTGATGTTAG
*
15536409 GAGGGA GAGGGA GAGGGA GAGGGA GAGGGA AAGGG
1 GAGGGA GAGGGA GAGGGA GAGGGA GAGGGA GAGGG
15536444 TGGGGTAGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.34, C:0.00, G:0.66, T:0.00
Consensus pattern (6 bp):
GAGGGA
Found at i:15543334 original size:37 final size:36
Alignment explanation
Indices: 15543262--15543337 Score: 98
Period size: 37 Copynumber: 2.1 Consensus size: 36
15543252 NNNNNNNNAT
* * *
15543262 AAATTTATAAAATATGTAAGTATATAAAAGTACTAA
1 AAATTTATAAAATATATAAATATATAAAAGAACTAA
* *
15543298 AAATTTATAAATTTATATAAATATGTAAAAGAACTAA
1 AAATTTATAAA-ATATATAAATATATAAAAGAACTAA
15543335 AAA
1 AAA
15543338 GCGTATCAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
36 11 0.32
37 23 0.68
ACGTcount: A:0.58, C:0.03, G:0.07, T:0.33
Consensus pattern (36 bp):
AAATTTATAAAATATATAAATATATAAAAGAACTAA
Found at i:15544608 original size:38 final size:38
Alignment explanation
Indices: 15544556--15544735 Score: 252
Period size: 38 Copynumber: 4.7 Consensus size: 38
15544546 AACCAACCGA
* *
15544556 AACATGCTAGTTTGCTCATAAGAGCTATTCCATCCAAT
1 AACATGCCAATTTGCTCATAAGAGCTATTCCATCCAAT
15544594 AACATGCCAATTTGCTCATAAGAGCTATTCCATCCAAT
1 AACATGCCAATTTGCTCATAAGAGCTATTCCATCCAAT
* * * *
15544632 AACATGCTAGTTTGATCATAAGAGCTATTCCATCCGAT
1 AACATGCCAATTTGCTCATAAGAGCTATTCCATCCAAT
* **
15544670 AACATGCCAATTTGCTCATAAGAGTTATTCCATCCGTT
1 AACATGCCAATTTGCTCATAAGAGCTATTCCATCCAAT
* * *
15544708 AACACGTCAATTTGCTTATAAGAGCTAT
1 AACATGCCAATTTGCTCATAAGAGCTAT
15544736 AATTGAAAAT
Statistics
Matches: 127, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 127 1.00
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.32
Consensus pattern (38 bp):
AACATGCCAATTTGCTCATAAGAGCTATTCCATCCAAT
Found at i:15544633 original size:19 final size:18
Alignment explanation
Indices: 15544610--15544671 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 18
15544600 CCAATTTGCT
15544610 CATAAGAGCTATTCCATC
1 CATAAGAGCTATTCCATC
* **
15544628 CAATAACATGCTAGTTTGAT-
1 C-ATAAGA-GCTA-TTCCATC
15544648 CATAAGAGCTATTCCATC
1 CATAAGAGCTATTCCATC
15544666 CGATAA
1 C-ATAA
15544672 CATGCCAATT
Statistics
Matches: 33, Mismatches: 6, Indels: 9
0.69 0.12 0.19
Matches are distributed among these distances:
17 4 0.12
18 6 0.18
19 14 0.42
20 5 0.15
21 4 0.12
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.29
Consensus pattern (18 bp):
CATAAGAGCTATTCCATC
Found at i:15548889 original size:28 final size:28
Alignment explanation
Indices: 15548821--15548879 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
15548811 ATTTTTTATT
* *
15548821 AAAATCATAAAAAAATATTTAAAAATATA
1 AAAATCGT-AAAAAACATTTAAAAATATA
*
15548850 AAAATTGTAAAAAACATTTAAAAATATA
1 AAAATCGTAAAAAACATTTAAAAATATA
15548878 AA
1 AA
15548880 TTATCGAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 21 0.78
29 6 0.22
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.27
Consensus pattern (28 bp):
AAAATCGTAAAAAACATTTAAAAATATA
Found at i:15549734 original size:6 final size:6
Alignment explanation
Indices: 15549723--15549756 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
15549713 ATAGTCACGC
15549723 CCAATA CCAATA CCAATA CCAATA CCAATA CCAA
1 CCAATA CCAATA CCAATA CCAATA CCAATA CCAA
15549757 ATCCATTGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.50, C:0.35, G:0.00, T:0.15
Consensus pattern (6 bp):
CCAATA
Found at i:15554215 original size:4 final size:4
Alignment explanation
Indices: 15554206--15554230 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
15554196 AATTGAAAAT
15554206 TTAA TTAA TTAA TTAA TTAA TTAA T
1 TTAA TTAA TTAA TTAA TTAA TTAA T
15554231 ATGCTGAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TTAA
Found at i:15557096 original size:16 final size:14
Alignment explanation
Indices: 15557061--15557098 Score: 76
Period size: 14 Copynumber: 2.7 Consensus size: 14
15557051 TGGACAGAGA
15557061 TGGTGTGTAGAGGC
1 TGGTGTGTAGAGGC
15557075 TGGTGTGTAGAGGC
1 TGGTGTGTAGAGGC
15557089 TGGTGTGTAG
1 TGGTGTGTAG
15557099 GATTCTGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.13, C:0.05, G:0.50, T:0.32
Consensus pattern (14 bp):
TGGTGTGTAGAGGC
Found at i:15560140 original size:19 final size:19
Alignment explanation
Indices: 15560116--15560245 Score: 215
Period size: 19 Copynumber: 6.8 Consensus size: 19
15560106 AATTTTTGAG
*
15560116 GATATGCAATCTTATATAT
1 GATATGCAATCTTAGATAT
*
15560135 GATATGCAATCGTAGATAT
1 GATATGCAATCTTAGATAT
15560154 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
15560173 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
15560192 GATATGCAATCTCAGATAT
1 GATATGCAATCTTAGATAT
**
15560211 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
15560230 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
15560246 ATATATGATT
Statistics
Matches: 102, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 102 1.00
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:15582721 original size:63 final size:63
Alignment explanation
Indices: 15582651--15582769 Score: 213
Period size: 63 Copynumber: 1.9 Consensus size: 63
15582641 CCCTGTGTAC
*
15582651 GAACCCCTATTGCT-AACCCATATGCAAAATCATATAGGATTCATTATGTGAACCCTCTCATAT
1 GAACCCCTATTG-TGAACCCATATGCAAAATCATATAGGATTCATTATGCGAACCCTCTCATAT
15582714 GAACCCCTATTGTGAACCCATATGCAAAATCATATAGGATTCATTATGCGAACCCT
1 GAACCCCTATTGTGAACCCATATGCAAAATCATATAGGATTCATTATGCGAACCCT
15582770 ATCTATTTAA
Statistics
Matches: 54, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
62 1 0.02
63 53 0.98
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.29
Consensus pattern (63 bp):
GAACCCCTATTGTGAACCCATATGCAAAATCATATAGGATTCATTATGCGAACCCTCTCATAT
Found at i:15582834 original size:21 final size:21
Alignment explanation
Indices: 15582791--15582834 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
15582781 CATGTGAACC
* *
15582791 CCCTATGTTATCACACGTGAA
1 CCCTAGGTTATCACACGTAAA
* *
15582812 CCCTAGGTTATGACATGTAAA
1 CCCTAGGTTATCACACGTAAA
15582833 CC
1 CC
15582835 TCCTATGTTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (21 bp):
CCCTAGGTTATCACACGTAAA
Found at i:15582923 original size:21 final size:21
Alignment explanation
Indices: 15582899--15582950 Score: 59
Period size: 23 Copynumber: 2.4 Consensus size: 21
15582889 ATTACATGTG
*
15582899 AACCCTATATTGCGACATGCA
1 AACCCTATATTACGACATGCA
* *
15582920 AACCCTATCTGTTACTACATGCA
1 AACCCTA--TATTACGACATGCA
15582943 AACCCTAT
1 AACCCTAT
15582951 TTGTTAATGC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 8 0.31
23 18 0.69
ACGTcount: A:0.33, C:0.31, G:0.10, T:0.27
Consensus pattern (21 bp):
AACCCTATATTACGACATGCA
Found at i:15582943 original size:23 final size:23
Alignment explanation
Indices: 15582913--15582956 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
15582903 CTATATTGCG
15582913 ACATGCAAACCCTATCTGTTACT
1 ACATGCAAACCCTATCTGTTACT
*
15582936 ACATGCAAACCCTATTTGTTA
1 ACATGCAAACCCTATCTGTTA
15582957 ATGCACCGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.32, C:0.27, G:0.09, T:0.32
Consensus pattern (23 bp):
ACATGCAAACCCTATCTGTTACT
Found at i:15587218 original size:30 final size:30
Alignment explanation
Indices: 15587171--15587227 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
15587161 GGGTAACCTC
15587171 AATATAATATCCACTTGTGTGAACAACCCT
1 AATATAATATCCACTTGTGTGAACAACCCT
* *
15587201 AATATACTAT-CAGCTTGTGTGAGCAAC
1 AATATAATATCCA-CTTGTGTGAACAAC
15587228 TTATTACCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 2 0.08
30 22 0.92
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (30 bp):
AATATAATATCCACTTGTGTGAACAACCCT
Found at i:15588961 original size:23 final size:22
Alignment explanation
Indices: 15588935--15589035 Score: 67
Period size: 19 Copynumber: 5.0 Consensus size: 22
15588925 AATTAATTTC
15588935 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-AAATCATATCT
* *
15588958 TCTAAGATTGCATATCATA---
1 TCTAAGATTACAAATCATATCT
* *
15588977 TCTAAGCTTACATATCATA---
1 TCTAAGATTACAAATCATATCT
* *
15588996 TCTAAGATTGCATATCATA---
1 TCTAAGATTACAAATCATATCT
*
15589015 TCTAAGATTACATATCATATC
1 TCTAAGATTACAAATCATATC
15589036 AAAGATTGCT
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
19 52 0.75
22 7 0.10
23 10 0.14
ACGTcount: A:0.39, C:0.18, G:0.07, T:0.37
Consensus pattern (22 bp):
TCTAAGATTACAAATCATATCT
Found at i:15588982 original size:19 final size:19
Alignment explanation
Indices: 15588958--15589049 Score: 139
Period size: 19 Copynumber: 4.8 Consensus size: 19
15588948 AATCATATCT
15588958 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
* *
15588977 TCTAAGCTTACATATCATA
1 TCTAAGATTGCATATCATA
15588996 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
15589015 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
* *
15589034 TCAAAGATTGCTTATC
1 TCTAAGATTGCATATC
15589050 CTTGAAGATT
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 65 1.00
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:15589006 original size:38 final size:38
Alignment explanation
Indices: 15588935--15589049 Score: 158
Period size: 38 Copynumber: 2.9 Consensus size: 38
15588925 AATTAATTTC
*
15588935 TCTAAGATTACAAAATCATATCTTCTAAGATTGCATATCATA
1 TCTAAGATTAC-ATATCATA---TCTAAGATTGCATATCATA
*
15588977 TCTAAGCTTACATATCATATCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATATCTAAGATTGCATATCATA
* *
15589015 TCTAAGATTACATATCATATCAAAGATTGCTTATC
1 TCTAAGATTACATATCATATCTAAGATTGCATATC
15589050 CTTGAAGATT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
38 51 0.75
41 7 0.10
42 10 0.15
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.37
Consensus pattern (38 bp):
TCTAAGATTACATATCATATCTAAGATTGCATATCATA
Found at i:15589653 original size:45 final size:45
Alignment explanation
Indices: 15589560--15590498 Score: 382
Period size: 44 Copynumber: 21.6 Consensus size: 45
15589550 TTCTAATCCA
* * * * * *
15589560 CTCCACTACAACTTTAGGGAGATGAGATTTG-TTTATTTAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGATTTCTTGAGTCTG
* *
15589604 CTCCACTGCAATTTCAGGGGGATAAGACTTGATTTCTTGAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGATTTCTTGAGTCTG
* * * * * *
15589649 CTCCACTGGAACTTCAGGGAGATAAGACTCGCTTTTTTGGGTCTA
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGATTTCTTGAGTCTG
* ** *
15589694 CTCCACTACAACTTCAGGGAGATAAGACCCGA-TGC--GA-TCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGATTTCTTGAGTCTG
* * * * **
15589735 CT-CTCTGCAACTTCAGAGAGATAAGA-TCTGTAATT-TT-AATCCA
1 CTCCACTGCAACTTCAGGGAGATAAGACT-TG-ATTTCTTGAGTCTG
* * * * *
15589778 CTCTACTGCAACTTCAGGGAGATAGGA-TT-ATTGGCTTTAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGATT-TCTTGAGTCTG
*** * *
15589822 CTCCACTGCAACTTCAGGGAGATAAGA-TTCGCCATCTTCACTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTT-GATTTCTTGAGTCTG
* * * * * *
15589867 C-CTCACTACAACTTCA-GAAGGATAAGGCTTGCTTACTT-AGTATG
1 CTC-CACTGCAACTTCAGGGA-GATAAGACTTGATTTCTTGAGTCTG
* *
15589911 CTCCACTGCAACTTCAGGGAGATAAGACTAGA-TGC--GA-TCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGATTTCTTGAGTCTG
* * * * **
15589952 CT-CTCTGCAACTTCAGAGAGATAAGA-TCTGTAATT-TT-AATCCA
1 CTCCACTGCAACTTCAGGGAGATAAGACT-TG-ATTTCTTGAGTCTG
* * * * *
15589995 CTCTACTGCAACTTCAGGGAGATAGGA-TT-ATTGGCTTTAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGATT-TCTTGAGTCTG
* * * * *
15590039 CTCCACTGTAACTTCAGAGAGATAAGACTCGCTTTCTTGGGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGATTTCTTGAGTCTG
* * *
15590084 CTCCACTGCAACTTTAGGGAGATAAGACTCT-CTTTCTTGGGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACT-TGATTTCTTGAGTCTG
* * * ** *
15590129 CTCCACTGCAACTTCATGGTGATAAAACCCGA-TGC--GA-TCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGATTTCTTGAGTCTG
* * * * * **
15590170 CT-CTCTGCAAATTCAGAGAGATAAGATTTG-TGATT-TT-AATCCA
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGAT--TTCTTGAGTCTG
* * * * * *
15590213 CTCCACTACAACTTCAGAGAGATAGGA-TT-ATTGGCTTTAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGATT-TCTTGAGTCTG
* * * *
15590257 CTCCACTGTAACTTCAGGGAGATAAGA-TT-CTCCATCTTCAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGAT--TTCTTGAGTCTG
* * * *
15590302 C-CTCACTACAACTTCA-GGAGGATAAGGCTTGCTTACTT-AGTCTG
1 CTC-CACTGCAACTTCAGGGA-GATAAGACTTGATTTCTTGAGTCTG
* * * * *
15590346 CTTCACTGCAACTTTAGGGAGATAAGACTAGA-TGC--GA-TATG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGATTTCTTGAGTCTG
* * * * **
15590387 CT---CTACAACTTCAGAGAGATAAGATTTG-TGATT-TT-AATCCA
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGAT--TTCTTGAGTCTG
* * * * * *
15590428 CTCCACTACAACTTCAGAGAGATAGGA-TT-ATTGGCTTTAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGATT-TCTTGAGTCTG
15590472 CTCCACTGCAACTTCAGGGAGATAAGA
1 CTCCACTGCAACTTCAGGGAGATAAGA
15590499 TTCACCATCT
Statistics
Matches: 672, Mismatches: 157, Indels: 132
0.70 0.16 0.14
Matches are distributed among these distances:
38 21 0.03
39 1 0.00
40 66 0.10
41 32 0.05
42 10 0.01
43 32 0.05
44 287 0.43
45 215 0.32
46 6 0.01
47 2 0.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.30
Consensus pattern (45 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTTGATTTCTTGAGTCTG
Found at i:15589968 original size:217 final size:216
Alignment explanation
Indices: 15589553--15590515 Score: 1204
Period size: 218 Copynumber: 4.4 Consensus size: 216
15589543 AGAGAGATTC
* * *** * *
15589553 TAATCCACTCCACTACAACTTTAGGGAGAT-GAGATT-TGTTTATTTAGTCTGCTCCACTGCAAT
1 TAATCCACTCCACTACAACTTCAGAGAGATAG-GATTAT-TGGCTTTAATCTGCTCCACTGCAAC
* *** * ** * * *
15589616 TTCAGGGGGATAAGACTT-GATTTCTTGAGTCTG-CTCCACTGGAACTTCAGGGAGATAAGACTC
64 TTCAGGGAGATAAGA-TTCGCCATCTTCAGTCTGCCT-CACTACAACTTCAGAG-GATAAGGCTT
** * * * *
15589679 GCTTTTTTGGGTCTACTCCACTACAACTTCAGGGAGATAAGACCCGATGCGATCTGCTCTCTGCA
126 GCTTACTT-AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACCAGATGCGATCTGCTCTCTGCA
15589744 ACTTCAGAGAGATAAGATCTGTAATTT
190 ACTTCAGAGAGATAAGATCTGTAATTT
* * *
15589771 TAATCCACTCTACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTT
1 TAATCCACTCCACTACAACTTCAGAGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTT
*
15589836 CAGGGAGATAAGATTCGCCATCTTCACTCTGCCTCACTACAACTTCAGAAGGATAAGGCTTGCTT
66 CAGGGAGATAAGATTCGCCATCTTCAGTCTGCCTCACTACAACTTCAG-AGGATAAGGCTTGCTT
* *
15589901 ACTTAGTATGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTC
130 ACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACCAGATGCGATCTGCTCTCTGCAACTTC
15589966 AGAGAGATAAGATCTGTAATTT
195 AGAGAGATAAGATCTGTAATTT
* * * *
15589988 TAATCCACTCTACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCCACTGTAACTT
1 TAATCCACTCCACTACAACTTCAGAGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTT
* * ** ** * * * *
15590053 CAGAGAGATAAGACTCGCTTTCTTGGGTCTG-CTCCACTGCAACTTTAGGGAGATAAGACTCT-C
66 CAGGGAGATAAGATTCGCCATCTTCAGTCTGCCT-CACTACAACTTCAGAG-GATAAGGCT-TGC
* * * * * * *
15590116 TTTCTTGGGTCTGCTCCACTGCAACTTCATGGTGATAAAACCCGATGCGATCTGCTCTCTGCAAA
128 TTACTT-AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACCAGATGCGATCTGCTCTCTGCAAC
* *
15590181 TTCAGAGAGATAAGATTTGTGATTT
192 TTCAGAGAGATAAGATCTGTAATTT
*
15590206 TAATCCACTCCACTACAACTTCAGAGAGATAGGATTATTGGCTTTAATCTGCTCCACTGTAACTT
1 TAATCCACTCCACTACAACTTCAGAGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTT
*
15590271 CAGGGAGATAAGATTCTCCATCTTCAGTCTGCCTCACTACAACTTCAGGAGGATAAGGCTTGCTT
66 CAGGGAGATAAGATTCGCCATCTTCAGTCTGCCTCACTACAACTTCA-GAGGATAAGGCTTGCTT
* * * * *
15590336 ACTTAGTCTGCTTCACTGCAACTTTAGGGAGATAAGACTAGATGCGATATG--CTCTACAACTTC
130 ACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACCAGATGCGATCTGCTCTCTGCAACTTC
* *
15590399 AGAGAGATAAGATTTGTGATTT
195 AGAGAGATAAGATCTGTAATTT
15590421 TAATCCACTCCACTACAACTTCAGAGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTT
1 TAATCCACTCCACTACAACTTCAGAGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTT
*
15590486 CAGGGAGATAAGATTCACCATCTTCAGTCT
66 CAGGGAGATAAGATTCGCCATCTTCAGTCT
15590516 TTTAAATTGC
Statistics
Matches: 655, Mismatches: 78, Indels: 27
0.86 0.10 0.04
Matches are distributed among these distances:
215 125 0.19
216 3 0.00
217 232 0.35
218 286 0.44
219 9 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (216 bp):
TAATCCACTCCACTACAACTTCAGAGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTT
CAGGGAGATAAGATTCGCCATCTTCAGTCTGCCTCACTACAACTTCAGAGGATAAGGCTTGCTTA
CTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACCAGATGCGATCTGCTCTCTGCAACTTCA
GAGAGATAAGATCTGTAATTT
Found at i:15590367 original size:435 final size:433
Alignment explanation
Indices: 15589553--15590498 Score: 1464
Period size: 435 Copynumber: 2.2 Consensus size: 433
15589543 AGAGAGATTC
* * *** * *
15589553 TAATCCACTCCACTACAACTTTAGGGAGAT-GAGATT-TGTTTATTTAGTCTGCTCCACTGCAAT
1 TAATCCACTCCACTACAACTTCAGAGAGATAG-GATTAT-TGGCTTTAATCTGCTCCACTGCAAC
* * *
15589616 TTCAGGGGGATAAGACTTGATTTCTTGAGTCTGCTCCACTGGAACTTCAGGGAGATAAGACTCGC
64 TTCAGGGAGATAAGACTCGATTTCTTGAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTCGC
* * *
15589681 TTTTTTGGGTCTACTCCACTACAACTTCAGGGAGATAAGACCCGATGCGATCTGCTCTCTGCAAC
129 TTTCTTGGGTCTACTCCACTACAACTTCAGGGAGATAAAACCCGATGCGATCTGCTCTCTGCAAA
* * *
15589746 TTCAGAGAGATAAGATCTGTAATTTTAATCCACTCTACTGCAACTTCAGGGAGATAGGATTATTG
194 TTCAGAGAGATAAGATCTGTAATTTTAATCCACTCCACTACAACTTCAGAGAGATAGGATTATTG
15589811 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTCACTCTGCCTCACTAC
259 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTCACTCTGCCTCACTAC
15589876 AACTTCAGAAGGATAAGGCTTGCTTACTTAGTATGCTCCACTGCAACTTCAGGGAGATAAGACTA
324 AACTTCAGAAGGATAAGGCTTGCTTACTTAGTATGCTCCACTGCAACTTCAGGGAGATAAGACTA
* *
15589941 GATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGTAATTT
389 GATGCGATATG--CTCTACAACTTCAGAGAGATAAGATCTGTAATTT
* * * *
15589988 TAATCCACTCTACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCCACTGTAACTT
1 TAATCCACTCCACTACAACTTCAGAGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTT
* * * * *
15590053 CAGAGAGATAAGACTCGCTTTCTTGGGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTCTCTT
66 CAGGGAGATAAGACTCGATTTCTTGAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTCGCTT
* * * *
15590118 TCTTGGGTCTGCTCCACTGCAACTTCATGGTGATAAAACCCGATGCGATCTGCTCTCTGCAAATT
131 TCTTGGGTCTACTCCACTACAACTTCAGGGAGATAAAACCCGATGCGATCTGCTCTCTGCAAATT
* *
15590183 CAGAGAGATAAGATTTGTGATTTTAATCCACTCCACTACAACTTCAGAGAGATAGGATTATTGGC
196 CAGAGAGATAAGATCTGTAATTTTAATCCACTCCACTACAACTTCAGAGAGATAGGATTATTGGC
* * *
15590248 TTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGATTCTCCATCTTCAGTCTGCCTCACTACAA
261 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTCACTCTGCCTCACTACAA
* * * *
15590313 CTTCAGGAGGATAAGGCTTGCTTACTTAGTCTGCTTCACTGCAACTTTAGGGAGATAAGACTAGA
326 CTTCAGAAGGATAAGGCTTGCTTACTTAGTATGCTCCACTGCAACTTCAGGGAGATAAGACTAGA
* *
15590378 TGCGATATGCTCTACAACTTCAGAGAGATAAGATTTGTGATTT
391 TGCGATATGCTCTACAACTTCAGAGAGATAAGATCTGTAATTT
15590421 TAATCCACTCCACTACAACTTCAGAGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTT
1 TAATCCACTCCACTACAACTTCAGAGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTT
15590486 CAGGGAGATAAGA
66 CAGGGAGATAAGA
15590499 TTCACCATCT
Statistics
Matches: 464, Mismatches: 45, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
433 104 0.22
435 358 0.77
436 2 0.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.30
Consensus pattern (433 bp):
TAATCCACTCCACTACAACTTCAGAGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTT
CAGGGAGATAAGACTCGATTTCTTGAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTCGCTT
TCTTGGGTCTACTCCACTACAACTTCAGGGAGATAAAACCCGATGCGATCTGCTCTCTGCAAATT
CAGAGAGATAAGATCTGTAATTTTAATCCACTCCACTACAACTTCAGAGAGATAGGATTATTGGC
TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTCACTCTGCCTCACTACAA
CTTCAGAAGGATAAGGCTTGCTTACTTAGTATGCTCCACTGCAACTTCAGGGAGATAAGACTAGA
TGCGATATGCTCTACAACTTCAGAGAGATAAGATCTGTAATTT
Found at i:15590914 original size:44 final size:44
Alignment explanation
Indices: 15590864--15590985 Score: 158
Period size: 44 Copynumber: 2.8 Consensus size: 44
15590854 ATCTGCTATT
* *
15590864 TTCAACCTACTCCACTGTTG-CTCAGGGAGATAGGA-TTCACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGACTT-ACAATC
15590908 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATC
* * * *
15590952 TTCAACCTATTCCACTACCGTCAAGGGAGATAGG
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGG
15590986 GCTGGGGTCA
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
44 67 0.96
45 3 0.04
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (44 bp):
TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATC
Found at i:15591105 original size:88 final size:88
Alignment explanation
Indices: 15591002--15591562 Score: 845
Period size: 88 Copynumber: 6.4 Consensus size: 88
15590992 GTCATCGATT
** *
15591002 TGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTTTGCTACAACCTAGGG
1 TGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAGGG
15591067 AGGCAAGGCTGGTGTCTTTGATC
66 AGGCAAGGCTGGTGTCTTTGATC
* * *
15591090 TGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTACTCCGCTGCAACCCAGAG
1 TGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAGGG
15591155 AGGCAAGGCTGGTGTCTTCT-ATC
66 AGGCAAGGCTGGTGTCTT-TGATC
* *
15591178 TGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACGTGCTCCGCTACAACCCAGGG
1 TGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAGGG
* *
15591243 AGGTAAGGTTGGTGTCTTTGATC
66 AGGCAAGGCTGGTGTCTTTGATC
* * * *
15591266 TACTTCGTTGTCGGTGCAGGAAGGCAAGATCTACTATTTTTAACCTACTCCGCTACAACCCAGGG
1 TGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAGGG
* *
15591331 AGGCAAGCCTGGTGTCTTCGATC
66 AGGCAAGGCTGGTGTCTTTGATC
* *
15591354 TGCTTCGCTGTCGGTGCAGAAAGGCAAGATCTGCAATTTTTAACCTGCTCCGCTACAACCCAGGG
1 TGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAGGG
* *
15591419 AGGCAAGGCTAGTGTTTTTGATC
66 AGGCAAGGCTGGTGTCTTTGATC
* * *
15591442 TACTTCACTGTCGGTGCAGGAAGGAAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAGGG
1 TGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAGGG
* * * * *
15591507 AAGCAATGTTAGTGTCTTCGATC
66 AGGCAAGGCTGGTGTCTTTGATC
*
15591530 TGCTTCGCTGTCTGTGCAGGAAGGCAAGATCTG
1 TGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTG
15591563 TTATCTTCAC
Statistics
Matches: 424, Mismatches: 47, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
87 1 0.00
88 422 1.00
89 1 0.00
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.28
Consensus pattern (88 bp):
TGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAGGG
AGGCAAGGCTGGTGTCTTTGATC
Found at i:15591115 original size:44 final size:44
Alignment explanation
Indices: 15591067--15591293 Score: 113
Period size: 44 Copynumber: 5.2 Consensus size: 44
15591057 CAACCTAGGG
15591067 AGGCAAGGCTGGTGTCTTTGATCTGCTTCGCTGTCGGTGCAGGA
1 AGGCAAGGCTGGTGTCTTTGATCTGCTTCGCTGTCGGTGCAGGA
* * * * * * * * ****
15591111 AGGCAAGATCTGCTATTTTTAACCTACTCCGCTG-CAACCCA-GA
1 AGGCAAG-GCTGGTGTCTTTGATCTGCTTCGCTGTCGGTGCAGGA
*
15591154 GAGGCAAGGCTGGTGTCTTCT-ATCTGCTTCACTGTCGGTGCAGGA
1 -AGGCAAGGCTGGTGTCTT-TGATCTGCTTCGCTGTCGGTGCAGGA
* * * * * * * **** *
15591199 AGGCAAGATCTGCTAT-TTTTAACGTGCTCCGCT-ACAACCCAGGG
1 AGGCAAG-GCTGGTGTCTTTGATC-TGCTTCGCTGTCGGTGCAGGA
* * * *
15591243 AGGTAAGGTTGGTGTCTTTGATCTACTTCGTTGTCGGTGCAGGA
1 AGGCAAGGCTGGTGTCTTTGATCTGCTTCGCTGTCGGTGCAGGA
15591287 AGGCAAG
1 AGGCAAG
15591294 ATCTACTATT
Statistics
Matches: 120, Mismatches: 53, Indels: 20
0.62 0.27 0.10
Matches are distributed among these distances:
43 29 0.24
44 59 0.49
45 32 0.27
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.28
Consensus pattern (44 bp):
AGGCAAGGCTGGTGTCTTTGATCTGCTTCGCTGTCGGTGCAGGA
Found at i:15592719 original size:88 final size:88
Alignment explanation
Indices: 15592570--15593135 Score: 886
Period size: 88 Copynumber: 6.5 Consensus size: 88
15592560 TGTTGATTCA
* *
15592570 CTGGTGTCTTTGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTT
1 CTGGTGTCTTTGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTACTC
* *
15592635 TGCTACAACCTAGGGAGGCAAGG
66 CGCTACAACCCAGGGAGGCAAGG
* *
15592658 CTGGTGTCTTTGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTT
1 CTGGTGTCTTTGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTACTC
* *
15592723 TGCTACAACCTAGGGAGGCAAGG
66 CGCTACAACCCAGGGAGGCAAGG
15592746 CTGGTGTCTTTGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTACTC
1 CTGGTGTCTTTGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTACTC
* *
15592811 CGCTGCAACCCAGAGAGGCAAGG
66 CGCTACAACCCAGGGAGGCAAGG
* * *
15592834 CTGGTGTCTTCT-ATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACGTGCT
1 CTGGTGTCTT-TGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTACT
*
15592898 CCGCTACAACCCAGGGAGGTAAGG
65 CCGCTACAACCCAGGGAGGCAAGG
* * * * *
15592922 TTGGTGTCTTTGATCTACTTCGTTGTCGGTGCAGGAAGCCAAGATCTACTATTTTTAACCTACTC
1 CTGGTGTCTTTGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTACTC
*
15592987 CGCTACAACCCAGGGAGGCAAGC
66 CGCTACAACCCAGGGAGGCAAGG
* *
15593010 CTGGTGTCTTCGATCTGCTTCGCTGTCGGTG-AGGAAGGCAAGATCTACTATTTTTAACCTACTC
1 CTGGTGTCTTTGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTACTC
*
15593074 CGCTACAACCCAGGGAGGCAAGC
66 CGCTACAACCCAGGGAGGCAAGG
*
15593097 CTGGTGTCTTCGATCTGCTTCGCTGTC-GTGCAGGAAGGC
1 CTGGTGTCTTTGATCTGCTTCGCTGTCGGTGCAGGAAGGC
15593136 CACTGCAACC
Statistics
Matches: 448, Mismatches: 27, Indels: 7
0.93 0.06 0.01
Matches are distributed among these distances:
86 3 0.01
87 91 0.20
88 353 0.79
89 1 0.00
ACGTcount: A:0.20, C:0.24, G:0.27, T:0.29
Consensus pattern (88 bp):
CTGGTGTCTTTGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTACTC
CGCTACAACCCAGGGAGGCAAGG
Found at i:15592786 original size:44 final size:45
Alignment explanation
Indices: 15592570--15592877 Score: 177
Period size: 44 Copynumber: 7.0 Consensus size: 45
15592560 TGTTGATTCA
* *
15592570 CTGGTGTCTTTGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGAT
1 CTGGTGTCTTTAATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGAG
* * * * * * *** *
15592615 CTGCTATTTTTAACCTGCTTTGCT-AC-AACCTAGGGAGGCAAG-G
1 CTGGTGTCTTTAATCTGCTTCGCTGTCGGTGC-AGGAAGGCAAGAG
* *
15592658 CTGGTGTCTTTGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGAT
1 CTGGTGTCTTTAATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGAG
* * * * * * *** *
15592703 CTGCTATTTTTAACCTGCTTTGCT-AC-AACCTAGGGAGGCAAG-G
1 CTGGTGTCTTTAATCTGCTTCGCTGTCGGTGC-AGGAAGGCAAGAG
* *
15592746 CTGGTGTCTTTGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGAT
1 CTGGTGTCTTTAATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGAG
* * * * * * ****
15592791 CTGCTATTTTTAACCTACTCCGCTG-CAACCCA-GAGAGGCAAG-G
1 CTGGTGTCTTTAATCTGCTTCGCTGTCGGTGCAGGA-AGGCAAGAG
*
15592834 CTGGTGTCTTCT-ATCTGCTTCACTGTCGGTGCAGGAAGGCAAGA
1 CTGGTGTCTT-TAATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGA
15592878 TCTGCTATTT
Statistics
Matches: 179, Mismatches: 71, Indels: 26
0.65 0.26 0.09
Matches are distributed among these distances:
43 56 0.31
44 65 0.36
45 58 0.32
ACGTcount: A:0.19, C:0.23, G:0.28, T:0.30
Consensus pattern (45 bp):
CTGGTGTCTTTAATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGAG
Found at i:15593225 original size:45 final size:45
Alignment explanation
Indices: 15593173--15593315 Score: 155
Period size: 45 Copynumber: 3.2 Consensus size: 45
15593163 TGTCTTCGAT
*
15593173 CTGCTTCGCTGTCATTACAGGAAGGCAAGATCTGCTATTTTTAAC
1 CTGCTTCGCTGTCAATACAGGAAGGCAAGATCTGCTATTTTTAAC
** * * * * * *
15593218 CTGCTTCGCTG-CAACCCAGGGAGGCAAGA-CTGGTGTCTTTGAT
1 CTGCTTCGCTGTCAATACAGGAAGGCAAGATCTGCTATTTTTAAC
** *
15593261 CTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAAC
1 CTGCTTCGCTGTCAATACAGGAAGGCAAGATCTGCTATTTTTAAC
*
15593306 CTGCTCCGCT
1 CTGCTTCGCT
15593316 ACAACCCAGG
Statistics
Matches: 76, Mismatches: 20, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
43 20 0.26
44 27 0.36
45 29 0.38
ACGTcount: A:0.20, C:0.25, G:0.25, T:0.30
Consensus pattern (45 bp):
CTGCTTCGCTGTCAATACAGGAAGGCAAGATCTGCTATTTTTAAC
Found at i:15593243 original size:44 final size:44
Alignment explanation
Indices: 15593190--15593325 Score: 148
Period size: 44 Copynumber: 3.1 Consensus size: 44
15593180 GCTGTCATTA
15593190 CAGGAAGGCAAGATCTGCTATTTTTAACCTGCTTCGCTGCAACC
1 CAGGAAGGCAAGATCTGCTATTTTTAACCTGCTTCGCTGCAACC
* * * * * * ****
15593234 CAGGGAGGCAAGA-CTGGTGTCTTTGATCTGCTTCGCTGTCGGTG
1 CAGGAAGGCAAGATCTGCTATTTTTAACCTGCTTCGCTG-CAACC
* *
15593278 CAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACC
1 CAGGAAGGCAAGATCTGCTATTTTTAACCTGCTTCGCTGCAACC
15593322 CAGG
1 CAGG
15593326 GAAGCAATGT
Statistics
Matches: 68, Mismatches: 22, Indels: 4
0.72 0.23 0.04
Matches are distributed among these distances:
43 20 0.29
44 30 0.44
45 18 0.26
ACGTcount: A:0.22, C:0.26, G:0.26, T:0.26
Consensus pattern (44 bp):
CAGGAAGGCAAGATCTGCTATTTTTAACCTGCTTCGCTGCAACC
Found at i:15593262 original size:150 final size:150
Alignment explanation
Indices: 15593000--15593286 Score: 468
Period size: 150 Copynumber: 1.9 Consensus size: 150
15592990 TACAACCCAG
* * *
15593000 GGAGGCAAGCCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGAGGAAGGCAAGATCTACTATTTTT
1 GGAGGCAAGACTGGTGTCTTCGATCTGCTTCGCTGTCAGTCAGGAAGGCAAGATCTACTATTTTT
*
15593065 AACCTACTCCGCTACAACCCAGGGAGGCAAGCCTGGTGTCTTCGATCTGCTTCGCTGTC-GTGCA
66 AACCTACTCCGCTACAACCCAGGGAGGCAAGACTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCA
15593129 GGAAGGCCACTGCAACCTAA
131 GGAAGGCCACTGCAACCTAA
* *
15593149 GGAGGCAAGACTGGTGTCTTCGATCTGCTTCGCTGTCATTACAGGAAGGCAAGATCTGCTATTTT
1 GGAGGCAAGACTGGTGTCTTCGATCTGCTTCGCTGTCAGT-CAGGAAGGCAAGATCTACTATTTT
* * * *
15593214 TAACCTGCTTCGCTGCAACCCAGGGAGGCAAGACTGGTGTCTTTGATCTGCTTCGCTGTCGGTGC
65 TAACCTACTCCGCTACAACCCAGGGAGGCAAGACTGGTGTCTTCGATCTGCTTCGCTGTCGGTGC
15593279 AGGAAGGC
130 AGGAAGGC
15593287 AAGATCTGCT
Statistics
Matches: 126, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
149 37 0.29
150 77 0.61
151 12 0.10
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (150 bp):
GGAGGCAAGACTGGTGTCTTCGATCTGCTTCGCTGTCAGTCAGGAAGGCAAGATCTACTATTTTT
AACCTACTCCGCTACAACCCAGGGAGGCAAGACTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCA
GGAAGGCCACTGCAACCTAA
Found at i:15593271 original size:43 final size:43
Alignment explanation
Indices: 15593138--15593271 Score: 142
Period size: 44 Copynumber: 3.1 Consensus size: 43
15593128 AGGAAGGCCA
* * *
15593138 CTGCAACCTAAGGAGGCAAGACTGGTGTCTTCGATCTGCTTCG
1 CTGCAACCCAGGGAGGCAAGACTGGTGTCTTTGATCTGCTTCG
*** * * * * * *
15593181 CTGTCATTACAGGAAGGCAAGATCTGCTATTTTTAACCTGCTTCG
1 CTG-CAACCCAGGGAGGCAAGA-CTGGTGTCTTTGATCTGCTTCG
15593226 CTGCAACCCAGGGAGGCAAGACTGGTGTCTTTGATCTGCTTCG
1 CTGCAACCCAGGGAGGCAAGACTGGTGTCTTTGATCTGCTTCG
15593269 CTG
1 CTG
15593272 TCGGTGCAGG
Statistics
Matches: 68, Mismatches: 21, Indels: 4
0.73 0.23 0.04
Matches are distributed among these distances:
43 23 0.34
44 26 0.38
45 19 0.28
ACGTcount: A:0.21, C:0.25, G:0.26, T:0.28
Consensus pattern (43 bp):
CTGCAACCCAGGGAGGCAAGACTGGTGTCTTTGATCTGCTTCG
Found at i:15593287 original size:88 final size:88
Alignment explanation
Indices: 15593138--15593382 Score: 366
Period size: 88 Copynumber: 2.8 Consensus size: 88
15593128 AGGAAGGCCA
* * * *
15593138 CTGCAACCTAAGGAGGCAAGACTGGTGTCTTCGATCTGCTTCGCTGTCATTACAGGAAGGCAAGA
1 CTGCAACCCAGGGAGGCAAGACTGGTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGA
*
15593203 TCTGCTATTTTTAACCTGCTTCG
66 TCTGCTATTTTTAACCTGCTCCG
* *
15593226 CTGCAACCCAGGGAGGCAAGACTGGTGTCTTTGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGA
1 CTGCAACCCAGGGAGGCAAGACTGGTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGA
15593291 TCTGCTATTTTTAACCTGCTCCG
66 TCTGCTATTTTTAACCTGCTCCG
* * * * *
15593314 CTACAACCCAGGGAAGCAATG-TTAGTGTCTTCGATCTGCTTCGCTGTCTGTGCAGGAAGGCAAG
1 CTGCAACCCAGGGAGGCAA-GACTGGTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAG
15593378 ATCTG
65 ATCTG
15593383 TTATCTTCAC
Statistics
Matches: 143, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
88 142 0.99
89 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.28
Consensus pattern (88 bp):
CTGCAACCCAGGGAGGCAAGACTGGTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGA
TCTGCTATTTTTAACCTGCTCCG
Found at i:15593329 original size:45 final size:45
Alignment explanation
Indices: 15593192--15593329 Score: 138
Period size: 45 Copynumber: 3.1 Consensus size: 45
15593182 TGTCATTACA
*
15593192 GGAAGGCAAGATCTGCTATTTTTAACCTGCTTCGCTGCAACCCAG
1 GGAAGGCAAGATCTGCTATTTTTAACCTGCTTCGCTACAACCCAG
* * * * * * ****
15593237 GG-AGGCAAGA-CTGGTGTCTTTGATCTGCTTCGCTGTCGGTGCA-
1 GGAAGGCAAGATCTGCTATTTTTAACCTGCTTCGCT-ACAACCCAG
*
15593280 GGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAG
1 GGAAGGCAAGATCTGCTATTTTTAACCTGCTTCGCTACAACCCAG
15593325 GGAAG
1 GGAAG
15593330 CAATGTTAGT
Statistics
Matches: 68, Mismatches: 21, Indels: 8
0.70 0.22 0.08
Matches are distributed among these distances:
43 21 0.31
44 22 0.32
45 25 0.37
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.26
Consensus pattern (45 bp):
GGAAGGCAAGATCTGCTATTTTTAACCTGCTTCGCTACAACCCAG
Found at i:15594730 original size:14 final size:15
Alignment explanation
Indices: 15594707--15594739 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
15594697 ATCGACGCTT
15594707 TTCCAAATAAGG-CC
1 TTCCAAATAAGGTCC
*
15594721 TTCCACATAAGGTCC
1 TTCCAAATAAGGTCC
15594736 TTCC
1 TTCC
15594740 CAGCTTGGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.27, C:0.33, G:0.12, T:0.27
Consensus pattern (15 bp):
TTCCAAATAAGGTCC
Found at i:15595575 original size:25 final size:26
Alignment explanation
Indices: 15595524--15595584 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
15595514 AAGAATATCC
* **
15595524 AAAAGAATGAAAGAATAATTATTTCA
1 AAAAGAATGAAAAAATAATTAGCTCA
*
15595550 AAAAGAATGAAAAAAT-ATTGGCTCA
1 AAAAGAATGAAAAAATAATTAGCTCA
15595575 AAAATGAATG
1 AAAA-GAATG
15595585 CAAATATGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 10 0.33
26 20 0.67
ACGTcount: A:0.57, C:0.05, G:0.15, T:0.23
Consensus pattern (26 bp):
AAAAGAATGAAAAAATAATTAGCTCA
Found at i:15597441 original size:830 final size:809
Alignment explanation
Indices: 15595842--15597481 Score: 3091
Period size: 830 Copynumber: 2.0 Consensus size: 809
15595832 AACATCTCCT
15595842 TATATATTGCATTCACCCCATTGTCAATCATGATTGGGTAGCGAATTTTCTGCATTAAATGAGCC
1 TATATATTGCATTCACCCCATTGTCAATCATGATTGGGTAGCGAATTTTCTGCATTAAATGAGCC
15595907 ATCCAACTTGACAATACCCATGTTGATGAATTTTTCAACTAGCTTTTTGAAGGTAATGCAATTCT
66 ATCCAACTTGACAATACCCATGTTGATGAATTTTTCAACTAGCTTTTTGAAGGTAATGCAATTCT
15595972 CTATTGAATGTCCCGTAATTCCCGGATGATAATCGCATTGTGTACTTGCGTCGTACCATTTGGGA
131 CTATTGAATGTCCCGTAATTCCCGGATGATAATCGCATTGTGTACTTGCGTCGTACCATTTGGGA
15596037 TACGGAGGTTGTGGAGGCTTCACATGTAAAGAAGAAACAACATGCGCATCGAATAAGCTTTGATA
196 TACGGAGGTTGTGGAGGCTTCACATGTAAAGAAGAAACAACATGCGCATCGAATAAGCTTTGATA
15596102 CACCTCCTTGTACGACATTGGAATTGGCGTGAACTGGAGTTTTTCAGTACCTTGCTTCACACATG
261 CACCTCCTTGTACGACATTGGAATTGGCGTGAACTGGAGTTTTTCAGTACCTTGCTTCACACATG
15596167 ATTCTTGTCTTGATGAACTTTACTGATTAGCAATTGATTTTTTGTACGTATTCACGCTGTTCACC
326 ATTCTTGTCTTGATGAACTTTACTGATTAGCAATTGATTTTTTGTACGTATTCACGCTGTTCACC
15596232 TCATTTTCTTTTTCTTTTGAGGCTTGCCTTCTATTATTTCCTCCAACATCAATCCTTCCACTCCT
391 TCATTTTCTTTTTCTTTTGAGGCTTGCCTTCTATTATTTCCTCCAACATCAATCCTTCCACTCCT
15596297 TATGGCGCTTTCAATCATTTCACCATTCATGATTATATCAGAAAATCTTTTTGTGTCACTCACTA
456 TATGGCGCTTTCAATCATTTCACCATTCATGATTATATCAGAAAATCTTTTTGTGTCACTCACTA
15596362 ACATATGTGTGATTAATGGAGCTTTCAATGTATTTATGAATAGCATTGTCATTTCCCTTTCCAAG
521 ACATATGTGTGATTAATGGAGCTTTCAATGTATTTATGAATAGCATTGTCATTTCCCTTTCCAAG
15596427 AGCGATGACTGAACTTGAACGGCGACCTCCCTCCACCTCTGTACGTATTGCCTAAAACTTTCACC
586 AGCGATGACTGAACTTGAACGGCGACCTCCCTCCACCTCTGTACGTATTGCCTAAAACTTTCACC
15596492 GTGCTTTTTTTCATGTTTTGTAGAATGATTCTATCAGGTGCCATGTCAGTTACATGATTGTACTG
651 GTGCTTTTTTTCATGTTTTGTAGAATGATTCTATCAGGTGCCATGTCAGTTACATGATTGTACTG
15596557 CTTTATGAATGCCTGTGCTAAATCTTTCCATGAATTAATCTTGGCACAACTCAATTGATTGTACC
716 CTTTATGAATGCCTGTGCTAAATCTTTCCATGAATTAATCTTGGCACAACTCAATTGATTGTACC
15596622 ACTTGGACGCTGCCCCTGTGAGGCTATCC
781 ACTTGGACGCTGCCCCTGTGAGGCTATCC
15596651 TNNNNNNNNNNNNNNNNNNNNNATATATTGCATTCACCCCATTGTCAATCATGATTGGGTAGCGA
1 T---------------------ATATATTGCATTCACCCCATTGTCAATCATGATTGGGTAGCGA
15596716 ATTTTCTGCATTAAATGAGCCATCCAACTTGACAATACCCATGTTGATGAATTTTTCAACTAGCT
45 ATTTTCTGCATTAAATGAGCCATCCAACTTGACAATACCCATGTTGATGAATTTTTCAACTAGCT
15596781 TTTTGAAGGTAATGCAATTCTCTATTGAATGTCCCGTAATTCCCGGATGATAATCGCATTGTGTA
110 TTTTGAAGGTAATGCAATTCTCTATTGAATGTCCCGTAATTCCCGGATGATAATCGCATTGTGTA
15596846 CTTGCGTCGTACCATTTGGGATACGGAGGTTGTGGAGGCTTCACATGTAAAGAAGAAACAACATG
175 CTTGCGTCGTACCATTTGGGATACGGAGGTTGTGGAGGCTTCACATGTAAAGAAGAAACAACATG
15596911 CGCATCGAATAAGCTTTGATACACCTCCTTGTACGACATTGGAATTGGCGTGAACTGGAGTTTTT
240 CGCATCGAATAAGCTTTGATACACCTCCTTGTACGACATTGGAATTGGCGTGAACTGGAGTTTTT
15596976 CAGTACCTTGCTTCACACATGATTCTTGTCTTGATGAACTTTACTGATTAGCAATTGATTTTTTG
305 CAGTACCTTGCTTCACACATGATTCTTGTCTTGATGAACTTTACTGATTAGCAATTGATTTTTTG
15597041 TACGTATTCACGCTGTTCACCTCATTTTCTTTTTCTTTTGAGGCTTGCCTTCTATTATTTCCTCC
370 TACGTATTCACGCTGTTCACCTCATTTTCTTTTTCTTTTGAGGCTTGCCTTCTATTATTTCCTCC
15597106 AACATCAATCCTTCCACTCCTTATGGCGCTTTCAATCATTTCACCATTCATGATTATATCAGAAA
435 AACATCAATCCTTCCACTCCTTATGGCGCTTTCAATCATTTCACCATTCATGATTATATCAGAAA
15597171 ATCTTTTTGTGTCACTCACTAACATATGTGTGATTAATGGAGCTTTCAATGTATTTATGAATAGC
500 ATCTTTTTGTGTCACTCACTAACATATGTGTGATTAATGGAGCTTTCAATGTATTTATGAATAGC
15597236 ATTGTCATTTCCCTTTCCAAGAGCGATGACTGAACTTGAACGGCGACCTCCCTCCACCTCTGTAC
565 ATTGTCATTTCCCTTTCCAAGAGCGATGACTGAACTTGAACGGCGACCTCCCTCCACCTCTGTAC
15597301 GTATTGCCTAAAACTTTCACCGTGCTTTTTTTCATGTTTTGTAGAATGATTCTATCAGGTGCCAT
630 GTATTGCCTAAAACTTTCACCGTGCTTTTTTTCATGTTTTGTAGAATGATTCTATCAGGTGCCAT
15597366 GTCAGTTACATGATTGTACTGCTTTATGAATGCCTGTGCTAAATCTTTCCATGAATTAATCTTGG
695 GTCAGTTACATGATTGTACTGCTTTATGAATGCCTGTGCTAAATCTTTCCATGAATTAATCTTGG
15597431 CACAACTCAATTGATTGTACCACTTGGACGCTGCCCCTGTGAGGCTATCC
760 CACAACTCAATTGATTGTACCACTTGGACGCTGCCCCTGTGAGGCTATCC
15597481 T
1 T
15597482 GGAAACAATG
Statistics
Matches: 810, Mismatches: 0, Indels: 21
0.97 0.00 0.03
Matches are distributed among these distances:
809 1 0.00
830 809 1.00
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.36
Consensus pattern (809 bp):
TATATATTGCATTCACCCCATTGTCAATCATGATTGGGTAGCGAATTTTCTGCATTAAATGAGCC
ATCCAACTTGACAATACCCATGTTGATGAATTTTTCAACTAGCTTTTTGAAGGTAATGCAATTCT
CTATTGAATGTCCCGTAATTCCCGGATGATAATCGCATTGTGTACTTGCGTCGTACCATTTGGGA
TACGGAGGTTGTGGAGGCTTCACATGTAAAGAAGAAACAACATGCGCATCGAATAAGCTTTGATA
CACCTCCTTGTACGACATTGGAATTGGCGTGAACTGGAGTTTTTCAGTACCTTGCTTCACACATG
ATTCTTGTCTTGATGAACTTTACTGATTAGCAATTGATTTTTTGTACGTATTCACGCTGTTCACC
TCATTTTCTTTTTCTTTTGAGGCTTGCCTTCTATTATTTCCTCCAACATCAATCCTTCCACTCCT
TATGGCGCTTTCAATCATTTCACCATTCATGATTATATCAGAAAATCTTTTTGTGTCACTCACTA
ACATATGTGTGATTAATGGAGCTTTCAATGTATTTATGAATAGCATTGTCATTTCCCTTTCCAAG
AGCGATGACTGAACTTGAACGGCGACCTCCCTCCACCTCTGTACGTATTGCCTAAAACTTTCACC
GTGCTTTTTTTCATGTTTTGTAGAATGATTCTATCAGGTGCCATGTCAGTTACATGATTGTACTG
CTTTATGAATGCCTGTGCTAAATCTTTCCATGAATTAATCTTGGCACAACTCAATTGATTGTACC
ACTTGGACGCTGCCCCTGTGAGGCTATCC
Found at i:15601009 original size:87 final size:86
Alignment explanation
Indices: 15600728--15601014 Score: 296
Period size: 87 Copynumber: 3.3 Consensus size: 86
15600718 TTTCAAAGTG
* **
15600728 AATAAAATTTGGTTT-GGGATTTATTACCGGCGTTCAACGGATTTTATTCCAATTTTAATTTTAT
1 AATAAAATTT-GTTTAAGGATTTATT-CCACCGTTCAACGGATTTTATTCC-ATTTTAATTTTAT
*
15600792 TTCCAAAACGAG-TATTAAAATTAA
63 TTCCAAAACGAGAAATTAAAATT-A
* * * * *
15600816 AATAAAATCTAT-TTTGA-GATTTATTTCCATCGTTCAACGGATTTTATTCCTTTTTTATATTAT
1 AATAAAAT-T-TGTTTAAGGATTTA-TTCCACCGTTCAACGGATTTTATTCCATTTTAATTTTAT
* *
15600879 TTCC-AAATGAGAAATTAAAGTTA
63 TTCCAAAACGAGAAATTAAAATTA
* * * * * * *
15600902 AATAAAATTTGTTTAGGGATTTATTCCAACCGTTCAACTGATTTTATTACACTTTGATTTTGTTG
1 AATAAAATTTGTTTAAGGATTTATTCC-ACCGTTCAACGGATTTTATTCCATTTTAATTTTATTT
15600967 CCAAAACGAGAAATTAAAATTA
65 CCAAAACGAGAAATTAAAATTA
*
15600989 AATAAAATTTGTCTAAGGATTTATTC
1 AATAAAATTTGTTTAAGGATTTATTC
15601015 TCGTCATTTA
Statistics
Matches: 166, Mismatches: 24, Indels: 19
0.79 0.11 0.09
Matches are distributed among these distances:
84 1 0.01
85 8 0.05
86 51 0.31
87 63 0.38
88 39 0.23
89 3 0.02
90 1 0.01
ACGTcount: A:0.35, C:0.11, G:0.12, T:0.42
Consensus pattern (86 bp):
AATAAAATTTGTTTAAGGATTTATTCCACCGTTCAACGGATTTTATTCCATTTTAATTTTATTTC
CAAAACGAGAAATTAAAATTA
Found at i:15601035 original size:174 final size:169
Alignment explanation
Indices: 15600728--15601122 Score: 368
Period size: 174 Copynumber: 2.3 Consensus size: 169
15600718 TTTCAAAGTG
** * *
15600728 AATAAAATTTGGTTTGGGATTTATTACCGGCGTTCAACGGATTTTATTCCAATTTTAATTTTATT
1 AATAAAATTT-GTTTGGGATTTATT-CCACCGTTCAACGGATTTTATTACAACTTTAATTTTATT
* * * * * **
15600793 TCCAAAACGAGTATTAAAATTAAAATAAAATCTATTTTGAGATTTATTTCCATCGTTCAACGGAT
64 GCCAAAACGAGAATTAAAATTAAAATAAAATCTATTCTAAGATTTATTTCCATC-TTAAAAAGAT
* *
15600858 TTTATTCCTTTTTTATATTATTTCCAAATGAGAAATTAAAGTTA
128 TTTATTCCATTTTAATATTATTTCCAAATGAG-AATTAAA-TTA
* * *
15600902 AATAAAATTTGTTTAGGGATTTATTCCAACCGTTCAACTGATTTTATTAC-ACTTTGATTTTGTT
1 AATAAAATTTGTTT-GGGATTTATTCC-ACCGTTCAACGGATTTTATTACAACTTTAATTTTATT
15600966 GCCAAAACGAGAAATTAAAATT-AAATAAAAT-T-TGTCTAAGGATTTATTCTCGTCAT-TTAAA
64 GCCAAAACGAG-AATTAAAATTAAAATAAAATCTAT-TCTAA-GATTTATT-TC--CATCTTAAA
* * * * *
15601027 AAGATTTTATTCGATTTTAATTTTGTTTCTAAATTAGAATTAAATTA
123 AAGATTTTATTCCATTTTAATATTATTTCCAAATGAGAATTAAATTA
* * * * * *
15601074 AATGAAATCTATTTCGGGATTTATTCTCGCCGTTTAACAAGATTTTATT
1 AATAAAATTTGTTT-GGGATTTATTC-CACCGTTCAAC-GGATTTTATT
15601123 CGATATTGAT
Statistics
Matches: 183, Mismatches: 28, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
171 1 0.01
172 37 0.20
173 61 0.33
174 81 0.44
176 3 0.02
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.43
Consensus pattern (169 bp):
AATAAAATTTGTTTGGGATTTATTCCACCGTTCAACGGATTTTATTACAACTTTAATTTTATTGC
CAAAACGAGAATTAAAATTAAAATAAAATCTATTCTAAGATTTATTTCCATCTTAAAAAGATTTT
ATTCCATTTTAATATTATTTCCAAATGAGAATTAAATTA
Found at i:15601193 original size:83 final size:85
Alignment explanation
Indices: 15601005--15601193 Score: 206
Period size: 85 Copynumber: 2.2 Consensus size: 85
15600995 ATTTGTCTAA
* * **
15601005 GGATTTATTCTCG-TCATTTAAAAAGATTTTATTCGATTTTAATTTTGTTTCTAAATTAGAATTA
1 GGATTTATTCTCGCT-ATTTAAAAAGATTTTATTCGATATTAATTTTGTTTCCAAAGAAGAATTA
* *
15601069 AATTAAATGAAATCTATTTCG
65 AATCAAATGAAATATATTTCG
** * * *
15601090 GGATTTATTCTCGCCGTTTAACAAGATTTTATTCGATATTGA-TTTGTTTCCAAACGAAGACTT-
1 GGATTTATTCTCGCTATTTAAAAAGATTTTATTCGATATTAATTTTGTTTCCAAA-GAAGAATTA
* *
15601153 AATCAAAT-AATTATGTTTCG
65 AATCAAATGAAATATATTTCG
*
15601173 GGATTTATTCCCGCTATTTAA
1 GGATTTATTCTCGCTATTTAA
15601194 TAGACTTTAT
Statistics
Matches: 86, Mismatches: 16, Indels: 6
0.80 0.15 0.06
Matches are distributed among these distances:
83 27 0.31
84 18 0.21
85 41 0.48
ACGTcount: A:0.31, C:0.12, G:0.13, T:0.44
Consensus pattern (85 bp):
GGATTTATTCTCGCTATTTAAAAAGATTTTATTCGATATTAATTTTGTTTCCAAAGAAGAATTAA
ATCAAATGAAATATATTTCG
Found at i:15609441 original size:30 final size:30
Alignment explanation
Indices: 15609400--15609512 Score: 172
Period size: 30 Copynumber: 3.8 Consensus size: 30
15609390 AAGCCACTCT
*
15609400 TATCCCCACTAACTCCCATTACACCACCCA
1 TATCCCCACTAACTCCCATTAAACCACCCA
* *
15609430 TATCACCACTAACTCCTATTAAACCACCCA
1 TATCCCCACTAACTCCCATTAAACCACCCA
* *
15609460 CATCCCCACTAACTCCCATTAAACCACCTA
1 TATCCCCACTAACTCCCATTAAACCACCCA
*
15609490 TATCCCCACTAACTCCCACTAAA
1 TATCCCCACTAACTCCCATTAAA
15609513 TCTGATTAGT
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 74 1.00
ACGTcount: A:0.34, C:0.45, G:0.00, T:0.21
Consensus pattern (30 bp):
TATCCCCACTAACTCCCATTAAACCACCCA
Found at i:15611830 original size:78 final size:78
Alignment explanation
Indices: 15611687--15611839 Score: 198
Period size: 78 Copynumber: 2.0 Consensus size: 78
15611677 GATCTCAAAC
* * * * *
15611687 ATCACTAAATAATGATTTGATGCTGCTCACTCAAGCTGTTGAGATTCCACAACTTGTGTTAGATC
1 ATCACTAAATAATAATTCGATGCTGCTCACTCAAGCTGTCGAGAATCCACAACTTATGTTAGATC
15611752 TCAACCATCGCAA
66 TCAACCATCGCAA
* * * ** * *
15611765 ATCACTAACTAATAATTCGATGTTGTTCACTCAAGCTGTCGAGAATCTGCAATTTATGTTGGATC
1 ATCACTAAATAATAATTCGATGCTGCTCACTCAAGCTGTCGAGAATCCACAACTTATGTTAGATC
15611830 TCAACCATCG
66 TCAACCATCG
15611840 AGTAAATATC
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
78 63 1.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (78 bp):
ATCACTAAATAATAATTCGATGCTGCTCACTCAAGCTGTCGAGAATCCACAACTTATGTTAGATC
TCAACCATCGCAA
Found at i:15625601 original size:85 final size:85
Alignment explanation
Indices: 15625456--15625619 Score: 224
Period size: 85 Copynumber: 1.9 Consensus size: 85
15625446 CGCATACTTA
** *
15625456 TGTTGTTGTAGGTATGTCATAGGATCATCTGAAATTAGTTGATGGCCTTGTCTCTAACATTGTCT
1 TGTTGTTGTAGGTATGTCATAGGATCATCTGAAATTAGTTGATAACCTTATCTCTAACATTGTCT
*
15625521 TACTTATAGTGAAATAATTG
66 TACTAATAGTGAAATAATTG
* * *
15625541 TGTTGTTGTAGGTATGTCATAGGATCAT-TCGAAATTAGATT-CTAACTTTATCTCTGACATTGT
1 TGTTGTTGTAGGTATGTCATAGGATCATCT-GAAATTAG-TTGATAACCTTATCTCTAACATTGT
*
15625604 CTTACTAATGGTGAAA
64 CTTACTAATAGTGAAA
15625620 GCGAATCCTA
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
84 1 0.01
85 66 0.96
86 2 0.03
ACGTcount: A:0.27, C:0.12, G:0.20, T:0.41
Consensus pattern (85 bp):
TGTTGTTGTAGGTATGTCATAGGATCATCTGAAATTAGTTGATAACCTTATCTCTAACATTGTCT
TACTAATAGTGAAATAATTG
Found at i:15627479 original size:16 final size:16
Alignment explanation
Indices: 15627460--15627490 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
15627450 TGGTTTTTCC
15627460 AGTGAAAGGTTGTGAT
1 AGTGAAAGGTTGTGAT
15627476 AGTGAAAGGTTGTGA
1 AGTGAAAGGTTGTGA
15627491 CCTAGTGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.39, T:0.29
Consensus pattern (16 bp):
AGTGAAAGGTTGTGAT
Found at i:15631038 original size:16 final size:17
Alignment explanation
Indices: 15631014--15631046 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
15631004 TAGGAAGGGG
15631014 GAAAG-AAAAAAGGGAA
1 GAAAGAAAAAAAGGGAA
*
15631030 GAAATAAAAAAAGGGAA
1 GAAAGAAAAAAAGGGAA
15631047 TTTTTTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.70, C:0.00, G:0.27, T:0.03
Consensus pattern (17 bp):
GAAAGAAAAAAAGGGAA
Found at i:15633042 original size:20 final size:22
Alignment explanation
Indices: 15633011--15633051 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
15633001 TTTTGGTTTG
15633011 TAATGCGAATAA-CAAAATTTC
1 TAATGCGAATAATCAAAATTTC
15633032 TAATG-GAATAATCAAAATTT
1 TAATGCGAATAATCAAAATTT
15633052 TAAGAACGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.49, C:0.10, G:0.10, T:0.32
Consensus pattern (22 bp):
TAATGCGAATAATCAAAATTTC
Done.