Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47972186
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2603476 characters in sequence are not A, C, G, or T
File 48 of 145
Found at i:16883996 original size:18 final size:18
Alignment explanation
Indices: 16883963--16883997 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
16883953 ACGATGTGCC
*
16883963 AAACTATTTTCGTGCTTG
1 AAACTATTTTCATGCTTG
*
16883981 AAACTATTTTTATGCTT
1 AAACTATTTTCATGCTT
16883998 CCTGTTCTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.14, G:0.11, T:0.49
Consensus pattern (18 bp):
AAACTATTTTCATGCTTG
Found at i:16886447 original size:13 final size:13
Alignment explanation
Indices: 16886423--16886471 Score: 53
Period size: 13 Copynumber: 3.7 Consensus size: 13
16886413 TTCAAGTTCT
16886423 GATATAGTTTCCAA
1 GATAT-GTTTCCAA
16886437 GATATGTTTCCAA
1 GATATGTTTCCAA
* * **
16886450 GTTATATTTTAAA
1 GATATGTTTCCAA
16886463 GATATGTTT
1 GATATGTTT
16886472 TACGCGTGCT
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
13 24 0.83
14 5 0.17
ACGTcount: A:0.33, C:0.08, G:0.14, T:0.45
Consensus pattern (13 bp):
GATATGTTTCCAA
Found at i:16888482 original size:26 final size:25
Alignment explanation
Indices: 16888452--16888526 Score: 114
Period size: 26 Copynumber: 2.9 Consensus size: 25
16888442 CCATATAACA
*
16888452 AAAAGCTCACGAAGAGCCTTTAAAT
1 AAAAGCTCACGAAGAGCCTTTAAAC
16888477 AGAAAGCTCACGAAGAGCCTTTAAAC
1 A-AAAGCTCACGAAGAGCCTTTAAAC
*
16888503 AAGAAGCTCACGAAGAGCCATTAA
1 AA-AAGCTCACGAAGAGCCTTTAA
16888527 TCAGGAGCTC
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
25 2 0.04
26 44 0.96
ACGTcount: A:0.44, C:0.21, G:0.19, T:0.16
Consensus pattern (25 bp):
AAAAGCTCACGAAGAGCCTTTAAAC
Found at i:16895754 original size:23 final size:23
Alignment explanation
Indices: 16895728--16895892 Score: 185
Period size: 23 Copynumber: 7.2 Consensus size: 23
16895718 ATAAGTGTCA
*
16895728 CACTGATATGTAGCTTAAGCTAC
1 CACTGATATGTAGCCTAAGCTAC
*
16895751 CACTAATATGTAGCCGT-AGCTAC
1 CACTGATATGTAGCC-TAAGCTAC
* *
16895774 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCTAAGCTAC
* *
16895797 CACTGATATTTAG-CTGTAGCTAC
1 CACTGATATGTAGCCT-AAGCTAC
* *
16895820 CACTGAAATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCTAAGCTAC
16895843 CACTGATATGTAGCC-ATAGCTAC
1 CACTGATATGTAGCCTA-AGCTAC
*
16895866 CACTGA-ATTGTAGCCGAAGCTAC
1 CACTGATA-TGTAGCCTAAGCTAC
16895889 CACT
1 CACT
16895893 AATCAATAAC
Statistics
Matches: 121, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
22 3 0.02
23 115 0.95
24 3 0.02
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (23 bp):
CACTGATATGTAGCCTAAGCTAC
Found at i:16895795 original size:46 final size:46
Alignment explanation
Indices: 16895728--16895895 Score: 246
Period size: 46 Copynumber: 3.7 Consensus size: 46
16895718 ATAAGTGTCA
* **
16895728 CACTGATATGTAGCTTAAGCTACCACTAATATGTAGCCGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTAATATGTAGCCGTAGCTAC
* * *
16895774 CACTGAAATGTAGCCGAAGCTACCACTGATATTTAGCTGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTAATATGTAGCCGTAGCTAC
* * *
16895820 CACTGAAATGTAGCCAAAGCTACCACTGATATGTAGCCATAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTAATATGTAGCCGTAGCTAC
*
16895866 CACTGAATTGTAGCCGAAGCTACCACTAAT
1 CACTGAAATGTAGCCGAAGCTACCACTAAT
16895896 CAATAACACT
Statistics
Matches: 109, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 109 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (46 bp):
CACTGAAATGTAGCCGAAGCTACCACTAATATGTAGCCGTAGCTAC
Found at i:16895811 original size:69 final size:69
Alignment explanation
Indices: 16895728--16895895 Score: 218
Period size: 69 Copynumber: 2.4 Consensus size: 69
16895718 ATAAGTGTCA
* **
16895728 CACTGATATGTAGCTTAAGCTACCACTAATATGTAGCCGTAGCTACCACTGAAATGTAGCCGA-A
1 CACTGATATTTAGCTTAAGCTACCACTAATATGTAGCCAAAGCTACCACTGAAATGTAGCC-ATA
16895792 GCTAC
65 GCTAC
*
16895797 CACTGATATTTAGCTGT-AGCTACCACTGAA-ATGTAGCCAAAGCTACCACTGATATGTAGCCAT
1 CACTGATATTTAGCT-TAAGCTACCACT-AATATGTAGCCAAAGCTACCACTGAAATGTAGCCAT
16895860 AGCTAC
64 AGCTAC
**
16895866 CACTGA-ATTGTAGCCGAAGCTACCACTAAT
1 CACTGATATT-TAGCTTAAGCTACCACTAAT
16895896 CAATAACACT
Statistics
Matches: 87, Mismatches: 6, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
68 6 0.07
69 78 0.90
70 3 0.03
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (69 bp):
CACTGATATTTAGCTTAAGCTACCACTAATATGTAGCCAAAGCTACCACTGAAATGTAGCCATAG
CTAC
Found at i:16896147 original size:18 final size:17
Alignment explanation
Indices: 16896121--16896159 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
16896111 ATTTTCCTTC
16896121 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
16896138 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
16896156 CACA
1 CACA
16896160 ATTTATACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:16900167 original size:24 final size:24
Alignment explanation
Indices: 16900140--16900185 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
16900130 TTTAAATTCA
*
16900140 AAGATATTAATAAAAATACATACT
1 AAGAAATTAATAAAAATACATACT
16900164 AAGAAATTAATAAAAATACATA
1 AAGAAATTAATAAAAATACATA
16900186 AATGGAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.63, C:0.07, G:0.04, T:0.26
Consensus pattern (24 bp):
AAGAAATTAATAAAAATACATACT
Found at i:16900385 original size:8 final size:8
Alignment explanation
Indices: 16900374--16900400 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
16900364 TATAAAACTA
16900374 TAAATTAT
1 TAAATTAT
16900382 TAAATTAT
1 TAAATTAT
16900390 TAAATTAT
1 TAAATTAT
16900398 TAA
1 TAA
16900401 TTAAGTTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
TAAATTAT
Found at i:16904993 original size:3 final size:3
Alignment explanation
Indices: 16904985--16905044 Score: 113
Period size: 3 Copynumber: 20.3 Consensus size: 3
16904975 AAAATAAATA
16904985 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
16905032 AAT AAT AAT AAT A
1 AAT AAT AAT AAT A
16905045 TCCAGATCAT
Statistics
Matches: 56, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 2 0.04
3 54 0.96
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:16907153 original size:19 final size:19
Alignment explanation
Indices: 16907107--16907154 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
16907097 GTATATATTT
16907107 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
16907125 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
16907144 TAAGTTTTATT
1 TAAATTTTATT
16907155 CATATTATAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:16911026 original size:19 final size:19
Alignment explanation
Indices: 16910960--16911018 Score: 111
Period size: 19 Copynumber: 3.2 Consensus size: 19
16910950 GTATATATTT
16910960 TAAAT-TTATTTAGGTAGA
1 TAAATCTTATTTAGGTAGA
16910978 TAAATCTTATTTAGGTAGA
1 TAAATCTTATTTAGGTAGA
16910997 TAAATCTTATTTAGGTAGA
1 TAAATCTTATTTAGGTAGA
16911016 TAA
1 TAA
16911019 GTTTTATTCA
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
18 5 0.12
19 35 0.88
ACGTcount: A:0.39, C:0.03, G:0.15, T:0.42
Consensus pattern (19 bp):
TAAATCTTATTTAGGTAGA
Found at i:16911532 original size:39 final size:39
Alignment explanation
Indices: 16911483--16911560 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
16911473 ACTAAAGAGA
* * *
16911483 TCTATGACCATGCTTATCAAGTTGTACTGTGAGAACAAG
1 TCTATAACCATGCCTATCAAGTTATACTGTGAGAACAAG
16911522 TCTATAACCATGCCTATCAAGTTATACTGTGAGAACAAG
1 TCTATAACCATGCCTATCAAGTTATACTGTGAGAACAAG
16911561 GCAACCATTA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.29
Consensus pattern (39 bp):
TCTATAACCATGCCTATCAAGTTATACTGTGAGAACAAG
Found at i:16918526 original size:31 final size:32
Alignment explanation
Indices: 16918488--16918555 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 32
16918478 TGGGCATTGC
* *
16918488 CATTACATATTTTTATCATTGTAGTCACTT-T
1 CATTACATACTTTTATCATTGTAGCCACTTGT
*
16918519 CATTACATACTTTTATCATTTTAGCCACTTGT
1 CATTACATACTTTTATCATTGTAGCCACTTGT
16918551 CATTA
1 CATTA
16918556 ATTTACCATT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
31 27 0.82
32 6 0.18
ACGTcount: A:0.26, C:0.19, G:0.06, T:0.49
Consensus pattern (32 bp):
CATTACATACTTTTATCATTGTAGCCACTTGT
Found at i:16919200 original size:12 final size:12
Alignment explanation
Indices: 16919179--16919207 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
16919169 AATTGATTCT
16919179 TAAA-AAAATTA
1 TAAAGAAAATTA
16919190 TAAAGAAAATTA
1 TAAAGAAAATTA
16919202 TAAAGA
1 TAAAGA
16919208 TAAAATGAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 4 0.24
12 13 0.76
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (12 bp):
TAAAGAAAATTA
Found at i:16923773 original size:21 final size:21
Alignment explanation
Indices: 16923747--16923801 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
16923737 ACAGTCTAAG
* *
16923747 CACACGGGCGTGTG-GAGTGGC
1 CACACGGGCATGTGAG-GTAGC
*
16923768 CACACGAGCATGTGAGGTAGC
1 CACACGGGCATGTGAGGTAGC
*
16923789 CACACGGCCATGT
1 CACACGGGCATGT
16923802 CTCTAAGCCA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
21 27 0.96
22 1 0.04
ACGTcount: A:0.22, C:0.27, G:0.36, T:0.15
Consensus pattern (21 bp):
CACACGGGCATGTGAGGTAGC
Found at i:16927493 original size:119 final size:120
Alignment explanation
Indices: 16927271--16927509 Score: 471
Period size: 119 Copynumber: 2.0 Consensus size: 120
16927261 TTTATTTCAT
16927271 ATTTTATACATTTAATTTTTATTATAAATTTTAATAATATAAAATATATCAAACATAACCTACCG
1 ATTTTATACATTTAATTTTTATTATAAATTTTAATAATATAAAATATATCAAACATAACCTACCG
16927336 TCCATTATAACATATTCAAAAAGGATTATTTGTTTAACACGCCAAACCTGATCCC
66 TCCATTATAACATATTCAAAAAGGATTATTTGTTTAACACGCCAAACCTGATCCC
16927391 ATTTTATACA-TTAATTTTTATTATAAATTTTAATAATATAAAATATATCAAACATAACCTACCG
1 ATTTTATACATTTAATTTTTATTATAAATTTTAATAATATAAAATATATCAAACATAACCTACCG
16927455 TCCATTATAACATATTCAAAAAGGATTATTTGTTTAACACGCCAAACCTGATCCC
66 TCCATTATAACATATTCAAAAAGGATTATTTGTTTAACACGCCAAACCTGATCCC
16927510 TTAGAATAAC
Statistics
Matches: 119, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
119 109 0.92
120 10 0.08
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.37
Consensus pattern (120 bp):
ATTTTATACATTTAATTTTTATTATAAATTTTAATAATATAAAATATATCAAACATAACCTACCG
TCCATTATAACATATTCAAAAAGGATTATTTGTTTAACACGCCAAACCTGATCCC
Found at i:16927700 original size:16 final size:16
Alignment explanation
Indices: 16927676--16927708 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
16927666 AGATAATTTC
*
16927676 ATTACAGCATTGTTTA
1 ATTAAAGCATTGTTTA
16927692 ATTAAAGCATTGTTTA
1 ATTAAAGCATTGTTTA
16927708 A
1 A
16927709 CATTCATAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.09, G:0.12, T:0.42
Consensus pattern (16 bp):
ATTAAAGCATTGTTTA
Found at i:16933912 original size:43 final size:43
Alignment explanation
Indices: 16933865--16934037 Score: 346
Period size: 43 Copynumber: 4.0 Consensus size: 43
16933855 GCCTTGGGAC
16933865 ATAGGGTGTCACAGTGAGGAATTGAAGTGGATAGAGCGAAAAT
1 ATAGGGTGTCACAGTGAGGAATTGAAGTGGATAGAGCGAAAAT
16933908 ATAGGGTGTCACAGTGAGGAATTGAAGTGGATAGAGCGAAAAT
1 ATAGGGTGTCACAGTGAGGAATTGAAGTGGATAGAGCGAAAAT
16933951 ATAGGGTGTCACAGTGAGGAATTGAAGTGGATAGAGCGAAAAT
1 ATAGGGTGTCACAGTGAGGAATTGAAGTGGATAGAGCGAAAAT
16933994 ATAGGGTGTCACAGTGAGGAATTGAAGTGGATAGAGCGAAAAT
1 ATAGGGTGTCACAGTGAGGAATTGAAGTGGATAGAGCGAAAAT
16934037 A
1 A
16934038 GAAGTGACCA
Statistics
Matches: 130, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 130 1.00
ACGTcount: A:0.38, C:0.07, G:0.35, T:0.21
Consensus pattern (43 bp):
ATAGGGTGTCACAGTGAGGAATTGAAGTGGATAGAGCGAAAAT
Found at i:16935978 original size:43 final size:43
Alignment explanation
Indices: 16935920--16936123 Score: 216
Period size: 43 Copynumber: 4.7 Consensus size: 43
16935910 CTGATAAGTG
* * *
16935920 TTTTCGTGTAAGACCACGTCAGGGACGATAGCATCGACTTGTG
1 TTTTCGTGTAAGACCACGTCTGGGACGATGGCATCGACTTGTA
* **
16935963 TTTTCGTGTAAGACCACGTCTGGGATGATGGCATTAACTTGTA
1 TTTTCGTGTAAGACCACGTCTGGGACGATGGCATCGACTTGTA
*
16936006 TTTTCGTGTAAGACCACGTCTGGGACGATGGCATGGACTTGTA
1 TTTTCGTGTAAGACCACGTCTGGGACGATGGCATCGACTTGTA
* * * * *
16936049 TTTTTGAGTAAGATCCTA--TATGGGACAATGGCATCGATTTGTGA
1 TTTTCGTGTAAGA-CC-ACGTCTGGGACGATGGCATCGACTTGT-A
* * * *
16936093 TTAT-ATGTAAGAGCACGTCTGGGACGTTGGC
1 TTTTCGTGTAAGACCACGTCTGGGACGATGGC
16936124 GTTGTACGAA
Statistics
Matches: 134, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 125 0.93
44 6 0.04
45 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.32
Consensus pattern (43 bp):
TTTTCGTGTAAGACCACGTCTGGGACGATGGCATCGACTTGTA
Found at i:16939182 original size:12 final size:13
Alignment explanation
Indices: 16939167--16939195 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
16939157 ATAAGTAGTT
16939167 TTTTCCATT-TTA
1 TTTTCCATTGTTA
16939179 TTTTCCATTGTTA
1 TTTTCCATTGTTA
16939192 TTTT
1 TTTT
16939196 TATTTCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.14, C:0.14, G:0.03, T:0.69
Consensus pattern (13 bp):
TTTTCCATTGTTA
Found at i:16959085 original size:6 final size:7
Alignment explanation
Indices: 16959063--16959088 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
16959053 TTCCTTTCAG
16959063 TTTAGTT
1 TTTAGTT
16959070 TTTAGTT
1 TTTAGTT
16959077 TTTAGTT
1 TTTAGTT
16959084 TTTAG
1 TTTAG
16959089 ATTATTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.15, T:0.69
Consensus pattern (7 bp):
TTTAGTT
Found at i:16959930 original size:12 final size:13
Alignment explanation
Indices: 16959908--16959936 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
16959898 ATTCACACTC
16959908 TGGACGTATGACT
1 TGGACGTATGACT
16959921 TGGA-GTATGACT
1 TGGACGTATGACT
16959933 TGGA
1 TGGA
16959937 AGCCCACTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.24, C:0.10, G:0.34, T:0.31
Consensus pattern (13 bp):
TGGACGTATGACT
Found at i:16965591 original size:17 final size:17
Alignment explanation
Indices: 16965571--16965628 Score: 62
Period size: 17 Copynumber: 3.2 Consensus size: 17
16965561 TTTTATAAAT
*
16965571 AATATATTATACTATTA
1 AATATATTATAATATTA
16965588 AATATATTTATAATATATA
1 AATATA-TTATAATAT-TA
*
16965607 TTAATAAATTATAATATTA
1 --AATATATTATAATATTA
16965626 AAT
1 AAT
16965629 TTTTCTACAT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
17 9 0.26
18 8 0.23
19 4 0.11
20 9 0.26
21 5 0.14
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (17 bp):
AATATATTATAATATTA
Found at i:16965591 original size:20 final size:20
Alignment explanation
Indices: 16965566--16965628 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
16965556 CATATTTTTA
*
16965566 TAAATAATATATTATACTAT
1 TAAATAATATATTATAATAT
16965586 TAAAT-ATAT-TTATAATA-
1 TAAATAATATATTATAATAT
* *
16965603 TATATTAATAAATTATAATAT
1 TA-AATAATATATTATAATAT
16965624 TAAAT
1 TAAAT
16965629 TTTTCTACAT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
17 2 0.06
18 9 0.26
19 7 0.20
20 15 0.43
21 2 0.06
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (20 bp):
TAAATAATATATTATAATAT
Found at i:16983099 original size:23 final size:22
Alignment explanation
Indices: 16983056--16983099 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
16983046 TTCTAAGTCG
16983056 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
16983079 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
16983100 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:16983212 original size:45 final size:45
Alignment explanation
Indices: 16983144--16983231 Score: 131
Period size: 45 Copynumber: 2.0 Consensus size: 45
16983134 AACAGATACT
* * ** *
16983144 CGGTGGATTCAGCACATAGCAACCATTTTATTAATCAATGATGAC
1 CGGTGGAATCAGCACATAACAACCACCTTACTAATCAATGATGAC
16983189 CGGTGGAATCAGCACATAACAACCACCTTACTAATCAATGATG
1 CGGTGGAATCAGCACATAACAACCACCTTACTAATCAATGATG
16983232 TTCGGTTCAC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAACAACCACCTTACTAATCAATGATGAC
Found at i:16983301 original size:51 final size:51
Alignment explanation
Indices: 16983234--16983429 Score: 225
Period size: 51 Copynumber: 3.9 Consensus size: 51
16983224 CAATGATGTT
* *
16983234 CGGTTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATC
1 CGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCATTACCATC
* * *** *
16983285 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGATCGGAACTATC
1 CGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCATTACCATC
* * * * * *
16983336 TGATACGCATAGCAGCCTGCACATAGTACTACACACGCGACC--TATCATTC
1 CGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCATTACCA-TC
* *
16983386 TGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 CGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCAT
16983430 CACTTTCACT
Statistics
Matches: 119, Mismatches: 23, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
49 2 0.02
50 39 0.33
51 78 0.66
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (51 bp):
CGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCATTACCATC
Found at i:16983417 original size:101 final size:101
Alignment explanation
Indices: 16983241--16983425 Score: 300
Period size: 101 Copynumber: 1.8 Consensus size: 101
16983231 GTTCGGTTCA
* * *
16983241 CATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCGGTACACGTAGTAGCCTGCA
1 CATAGCAGCCTGCACATAGTACTACACACGCGACCA-TACCATCCGGTACACGTAGTAGCCTGCA
16983306 CATAGTACTACACACGTGATCGGAACTATCTGATACG
65 CATAGTACTACACACGTGATCGGAACTATCTGATACG
* *
16983343 CATAGCAGCCTGCACATAGTACTACACACGCGACC-TATCATTCTGGTACACGTAGTAGCCTGCA
1 CATAGCAGCCTGCACATAGTACTACACACGCGACCATACCA-TCCGGTACACGTAGTAGCCTGCA
16983407 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
16983426 CCATCACTTT
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
100 4 0.05
101 41 0.53
102 32 0.42
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (101 bp):
CATAGCAGCCTGCACATAGTACTACACACGCGACCATACCATCCGGTACACGTAGTAGCCTGCAC
ATAGTACTACACACGTGATCGGAACTATCTGATACG
Found at i:16987771 original size:35 final size:35
Alignment explanation
Indices: 16987732--16987817 Score: 100
Period size: 35 Copynumber: 2.5 Consensus size: 35
16987722 TTTAATGGTA
* * * *
16987732 TCACTCCGTAGAGCCTGTAAATCATTTTCATGATG
1 TCACTCCGTAGAGCCAGTAAACCATTTCCATAATG
* * *
16987767 TCACTCAGTAGAGCCAGTATACCATTTCCTTAATG
1 TCACTCCGTAGAGCCAGTAAACCATTTCCATAATG
*
16987802 TCGCTCCGTAGAGCCA
1 TCACTCCGTAGAGCCA
16987818 ATAGACCACT
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 42 1.00
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (35 bp):
TCACTCCGTAGAGCCAGTAAACCATTTCCATAATG
Found at i:17000547 original size:18 final size:19
Alignment explanation
Indices: 17000512--17000551 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
17000502 TCTTTTACAA
*
17000512 TTTAATCCTTTTAGTTACT
1 TTTAATCCTTTTACTTACT
*
17000531 TTTAAT-CTTTTTCTTACT
1 TTTAATCCTTTTACTTACT
17000549 TTT
1 TTT
17000552 CTTTCATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.17, C:0.15, G:0.03, T:0.65
Consensus pattern (19 bp):
TTTAATCCTTTTACTTACT
Found at i:17007834 original size:27 final size:27
Alignment explanation
Indices: 17007804--17007856 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
17007794 CTAGGGAGAT
* *
17007804 TTGTTAGCTTGTTAGTAGGAGTAGAAG
1 TTGTTAGCTTATTAGTAAGAGTAGAAG
17007831 TTGTTAGCTTATTAGTAAGAGTAGAA
1 TTGTTAGCTTATTAGTAAGAGTAGAA
17007857 ATTTGAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.30, C:0.04, G:0.28, T:0.38
Consensus pattern (27 bp):
TTGTTAGCTTATTAGTAAGAGTAGAAG
Found at i:17012821 original size:14 final size:14
Alignment explanation
Indices: 17012802--17012831 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
17012792 CCACACATTT
17012802 GTTCTTCTCTGCTG
1 GTTCTTCTCTGCTG
17012816 GTTCTTCTCTGCTG
1 GTTCTTCTCTGCTG
17012830 GT
1 GT
17012832 GCTGGTGTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.00, C:0.27, G:0.23, T:0.50
Consensus pattern (14 bp):
GTTCTTCTCTGCTG
Found at i:17012930 original size:23 final size:24
Alignment explanation
Indices: 17012901--17012955 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 24
17012891 CTGGTACTGG
17012901 TGTTCCTCTGCT-TG-TTGGTTCTT
1 TGTTCCTCTGCTGTGCTT-GTTCTT
17012924 TGTTCCTCTGCTGGTGCTTGTTCTT
1 TGTTCCTCTGCT-GTGCTTGTTCTT
17012949 TGTTCCT
1 TGTTCCT
17012956 TTTCTCCACT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
23 12 0.41
25 15 0.52
26 2 0.07
ACGTcount: A:0.00, C:0.24, G:0.22, T:0.55
Consensus pattern (24 bp):
TGTTCCTCTGCTGTGCTTGTTCTT
Found at i:17014895 original size:18 final size:18
Alignment explanation
Indices: 17014872--17014937 Score: 114
Period size: 18 Copynumber: 3.7 Consensus size: 18
17014862 AAAATATGAG
*
17014872 AAATGATGTTCACATTTT
1 AAATGATGTTCACATTTC
17014890 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTC
*
17014908 AAATGATGTTCACATCTC
1 AAATGATGTTCACATTTC
17014926 AAATGATGTTCA
1 AAATGATGTTCA
17014938 AATGGATGGA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 46 1.00
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (18 bp):
AAATGATGTTCACATTTC
Found at i:17017265 original size:17 final size:18
Alignment explanation
Indices: 17017216--17017265 Score: 52
Period size: 17 Copynumber: 2.8 Consensus size: 18
17017206 CATTTTAAAA
17017216 TAAAATAATACAAATTTGT
1 TAAAATAATAC-AATTTGT
*
17017235 TAAAAGCAAT--AATTT-T
1 TAAAA-TAATACAATTTGT
17017251 TAAAATAATACAATT
1 TAAAATAATACAATT
17017266 GTGTCAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
15 3 0.12
16 6 0.23
17 9 0.35
19 5 0.19
20 3 0.12
ACGTcount: A:0.54, C:0.06, G:0.04, T:0.36
Consensus pattern (18 bp):
TAAAATAATACAATTTGT
Found at i:17017594 original size:13 final size:13
Alignment explanation
Indices: 17017576--17017637 Score: 61
Period size: 13 Copynumber: 4.7 Consensus size: 13
17017566 CTCAAAATTT
17017576 TCAAAAGCACTTC
1 TCAAAAGCACTTC
*
17017589 TCAAAAGTACTTC
1 TCAAAAGCACTTC
* *
17017602 TCAAAAGTACTTT
1 TCAAAAGCACTTC
* * *
17017615 TCCACAGCACTTTT
1 TCAAAAGCAC-TTC
17017629 TCAAAAGCA
1 TCAAAAGCA
17017638 ATGAATAACT
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
13 31 0.76
14 10 0.24
ACGTcount: A:0.37, C:0.26, G:0.08, T:0.29
Consensus pattern (13 bp):
TCAAAAGCACTTC
Found at i:17021308 original size:35 final size:35
Alignment explanation
Indices: 17021257--17021325 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 35
17021247 GCGGATGTGA
*
17021257 CCTGTTGGTCATGGGCCCGGGTTCCAATACCCGAG
1 CCTGTTGGTCACGGGCCCGGGTTCCAATACCCGAG
*
17021292 CCTGTTGGTCACGGGCCTGGGTTCCAATACCCGA
1 CCTGTTGGTCACGGGCCCGGGTTCCAATACCCGA
17021326 AAATTATTAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.14, C:0.32, G:0.30, T:0.23
Consensus pattern (35 bp):
CCTGTTGGTCACGGGCCCGGGTTCCAATACCCGAG
Found at i:17022130 original size:2 final size:2
Alignment explanation
Indices: 17022123--17022147 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
17022113 AAGTAATGAA
17022123 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
17022148 ATCTTAGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:17029552 original size:21 final size:21
Alignment explanation
Indices: 17029515--17029555 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
17029505 GCATATTTTA
17029515 TTTTATTTTTAATAATTGTTAT
1 TTTTATTTTT-ATAATTGTTAT
17029537 TTTTATTTTT-TGAATTGTT
1 TTTTATTTTTAT-AATTGTT
17029556 GTTGACATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 1 0.06
21 7 0.39
22 10 0.56
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.71
Consensus pattern (21 bp):
TTTTATTTTTATAATTGTTAT
Found at i:17032812 original size:21 final size:21
Alignment explanation
Indices: 17032775--17032815 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
17032765 GCATATTTTA
17032775 TTTTATTTTTAATAATTGTTAT
1 TTTTATTTTT-ATAATTGTTAT
17032797 TTTTATTTTT-TGAATTGTT
1 TTTTATTTTTAT-AATTGTT
17032816 GTTGACATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 1 0.06
21 7 0.39
22 10 0.56
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.71
Consensus pattern (21 bp):
TTTTATTTTTATAATTGTTAT
Found at i:17038136 original size:72 final size:72
Alignment explanation
Indices: 17038051--17038202 Score: 295
Period size: 72 Copynumber: 2.1 Consensus size: 72
17038041 GATGTTACAA
17038051 GATCTAACATTTTTTTACAAATTCTCGAATTATATGTATCATTGGTTTAGCCCAGACAAGTAACC
1 GATCTAACATTTTTTTACAAATTCTCGAATTATATGTATCATTGGTTTAGCCCAGACAAGTAACC
17038116 TCGATAT
66 TCGATAT
17038123 GATCTAACATTTTTTTACAAATTCTCGAATTATATGTATCATTGGTTTAGCCCAGACAAGTAACC
1 GATCTAACATTTTTTTACAAATTCTCGAATTATATGTATCATTGGTTTAGCCCAGACAAGTAACC
17038188 TCGATAT
66 TCGATAT
*
17038195 GATGTAAC
1 GATCTAAC
17038203 TATATGAGCA
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 79 1.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (72 bp):
GATCTAACATTTTTTTACAAATTCTCGAATTATATGTATCATTGGTTTAGCCCAGACAAGTAACC
TCGATAT
Found at i:17038241 original size:30 final size:29
Alignment explanation
Indices: 17038207--17038301 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 29
17038197 TGTAACTATA
17038207 TGAGCAATTCTGTTAAAATGTCAGCTTGTG
1 TGAGCAATTCTG-TAAAATGTCAGCTTGTG
17038237 TGAGCAA-TCT-TAAAATACTGTCAGCTTGTG
1 TGAGCAATTCTGT-AAA-A-TGTCAGCTTGTG
* *
17038267 TGAGCAATCCTG-AATATTGTCAGCTTGTG
1 TGAGCAATTCTGTAA-AATGTCAGCTTGTG
17038296 TGAGCA
1 TGAGCA
17038302 TTACATTCCC
Statistics
Matches: 57, Mismatches: 2, Indels: 13
0.79 0.03 0.18
Matches are distributed among these distances:
27 1 0.02
28 3 0.05
29 22 0.39
30 28 0.49
31 3 0.05
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (29 bp):
TGAGCAATTCTGTAAAATGTCAGCTTGTG
Found at i:17038292 original size:29 final size:30
Alignment explanation
Indices: 17038225--17038301 Score: 120
Period size: 29 Copynumber: 2.6 Consensus size: 30
17038215 TCTGTTAAAA
*
17038225 TGTCAGCTTGTGTGAGCAATCTTAAAATAC
1 TGTCAGCTTGTGTGAGCAATCCTAAAATAC
* *
17038255 TGTCAGCTTGTGTGAGCAATCCT-GAATAT
1 TGTCAGCTTGTGTGAGCAATCCTAAAATAC
17038284 TGTCAGCTTGTGTGAGCA
1 TGTCAGCTTGTGTGAGCA
17038302 TTACATTCCC
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
29 22 0.50
30 22 0.50
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.34
Consensus pattern (30 bp):
TGTCAGCTTGTGTGAGCAATCCTAAAATAC
Found at i:17040430 original size:12 final size:12
Alignment explanation
Indices: 17040415--17040439 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
17040405 AATAACCCAA
17040415 ATTATAAAAAAT
1 ATTATAAAAAAT
17040427 ATTATAAAAAAT
1 ATTATAAAAAAT
17040439 A
1 A
17040440 ACTAAAGTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
ATTATAAAAAAT
Found at i:17044962 original size:20 final size:20
Alignment explanation
Indices: 17044937--17044986 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
17044927 ATCCCTCACG
17044937 CCCGTGTGCTACATCACACA
1 CCCGTGTGCTACATCACACA
* * *
17044957 CTCGTGTGCCACATCACACG
1 CCCGTGTGCTACATCACACA
17044977 CCCGTGTGCT
1 CCCGTGTGCT
17044987 TAGGTCGTGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.18, C:0.40, G:0.20, T:0.22
Consensus pattern (20 bp):
CCCGTGTGCTACATCACACA
Found at i:17046595 original size:16 final size:16
Alignment explanation
Indices: 17046559--17046599 Score: 66
Period size: 15 Copynumber: 2.6 Consensus size: 16
17046549 AAATTTGTAA
*
17046559 TAAAAATTTTAAAACT
1 TAAAAATTTGAAAACT
17046575 T-AAAATTTGAAAACT
1 TAAAAATTTGAAAACT
17046590 TAAAAATTTG
1 TAAAAATTTG
17046600 GAGAAACTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 14 0.61
16 9 0.39
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.37
Consensus pattern (16 bp):
TAAAAATTTGAAAACT
Found at i:17046908 original size:57 final size:54
Alignment explanation
Indices: 17046812--17046967 Score: 197
Period size: 57 Copynumber: 2.9 Consensus size: 54
17046802 ATACAAATTA
* *
17046812 CAGAGAATATTTCCTGTTCACTCGTCTTTTCTTGCAAGGAATTTTTACTATTTTCAT
1 CAGAGAATATTTCCTGTTCACTCGTCTTTTCTTGCAAGGAATATTTACT-GTTT--T
* * * *
17046869 CAGATAATATTTCCTGTTCATTCGTCTTTTTTTGTAAGGAATATTTACTGTTTT
1 CAGAGAATATTTCCTGTTCACTCGTCTTTTCTTGCAAGGAATATTTACTGTTTT
** *
17046923 CAGAGAATATTTCCTG-TCACTTATCTTTTCTTGCAGGGAATATTT
1 CAGAGAATATTTCCTGTTCACTCGTCTTTTCTTGCAAGGAATATTT
17046968 CGTCAGAGAA
Statistics
Matches: 86, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
53 23 0.27
54 16 0.19
56 3 0.03
57 44 0.51
ACGTcount: A:0.23, C:0.17, G:0.13, T:0.47
Consensus pattern (54 bp):
CAGAGAATATTTCCTGTTCACTCGTCTTTTCTTGCAAGGAATATTTACTGTTTT
Found at i:17049836 original size:21 final size:23
Alignment explanation
Indices: 17049812--17049854 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 23
17049802 TCAATTTTTT
*
17049812 AAAACATATTT-CTTCT-TTTAG
1 AAAACAGATTTGCTTCTATTTAG
*
17049833 AAAAGAGATTTGCTTCTATTTA
1 AAAACAGATTTGCTTCTATTTA
17049855 TGATTAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 9 0.50
22 5 0.28
23 4 0.22
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.44
Consensus pattern (23 bp):
AAAACAGATTTGCTTCTATTTAG
Found at i:17057494 original size:66 final size:66
Alignment explanation
Indices: 17057410--17057671 Score: 380
Period size: 66 Copynumber: 4.0 Consensus size: 66
17057400 TTACTAATAG
* * *
17057410 AGTTCCTGTCAATTACAGCTCATAACAGGTGAGTAATGCTCAAACAATAATACAAATAAATTTCA
1 AGTTCCTGTCAATCACAGCTCATAACAGGTGAGTAATGCTCAAACAATAGTACAAATCAATTTCA
17057475 C
66 C
* * * *
17057476 AGTTCCTGTCAACCACAGCTTACAATAGGTGAGTAATGCTCAAACAATAGTACAAATCAATTTCA
1 AGTTCCTGTCAATCACAGCTCATAACAGGTGAGTAATGCTCAAACAATAGTACAAATCAATTTCA
17057541 C
66 C
* * * *
17057542 AGTTCTTGTCAATCAAAGCTCATAACATGTGAGTAATGCTCAAAAAATAGTACAAATCAATTTCA
1 AGTTCCTGTCAATCACAGCTCATAACAGGTGAGTAATGCTCAAACAATAGTACAAATCAATTTCA
*
17057607 T
66 C
* * * *
17057608 AATTCCTATCAATCACAACTCATAACAAGTGAGTAATGCTCAAACAATAGTACAAATCAATTTC
1 AGTTCCTGTCAATCACAGCTCATAACAGGTGAGTAATGCTCAAACAATAGTACAAATCAATTTC
17057672 TCACATTTCA
Statistics
Matches: 173, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
66 173 1.00
ACGTcount: A:0.41, C:0.20, G:0.11, T:0.27
Consensus pattern (66 bp):
AGTTCCTGTCAATCACAGCTCATAACAGGTGAGTAATGCTCAAACAATAGTACAAATCAATTTCA
C
Found at i:17059492 original size:13 final size:13
Alignment explanation
Indices: 17059474--17059499 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
17059464 GCGAGATACA
17059474 ATTTTTAATTTTT
1 ATTTTTAATTTTT
17059487 ATTTTTAATTTTT
1 ATTTTTAATTTTT
17059500 TAGGTCGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (13 bp):
ATTTTTAATTTTT
Found at i:17062211 original size:66 final size:66
Alignment explanation
Indices: 17062101--17062248 Score: 233
Period size: 66 Copynumber: 2.2 Consensus size: 66
17062091 ACGAGACATG
* ** *
17062101 TTTGGTGTGTTGGAGAGTGCTAGATTTATGCTTCACTTATGGGACATGTTTGACTCTATGAGTCT
1 TTTGGTGTGTTGGAGAGTGCTACATTTATAATTCACTTACGGGACATGTTTGACTCTATGAGTCT
17062166 A
66 A
* * *
17062167 TTTGGTGTGTTGGAGAGTGTTACCTTTATAATTCACTTACGGGACATGTTTGACTCTATGAGTTT
1 TTTGGTGTGTTGGAGAGTGCTACATTTATAATTCACTTACGGGACATGTTTGACTCTATGAGTCT
17062232 A
66 A
17062233 TTTGGTGTGTTGGAGA
1 TTTGGTGTGTTGGAGA
17062249 TTCGTGTATC
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
66 75 1.00
ACGTcount: A:0.20, C:0.11, G:0.28, T:0.42
Consensus pattern (66 bp):
TTTGGTGTGTTGGAGAGTGCTACATTTATAATTCACTTACGGGACATGTTTGACTCTATGAGTCT
A
Found at i:17064900 original size:431 final size:432
Alignment explanation
Indices: 17064096--17064948 Score: 1451
Period size: 431 Copynumber: 2.0 Consensus size: 432
17064086 CATCTGAACC
*
17064096 TAAACTGTCGTAATTCGGTGTAGTAGATTAAACTATTTTTCACATTTAAGGAGTTTAAATACAAG
1 TAAACTGTCGTAATTCGGTGCAGTAGATTAAACTATTTTTCACATTTAAGGAGTTTAAATACAAG
* *
17064161 CATTTTTGTTATGTTATAATTCACTTTCTTTAGTTTTGTTTACATTCAATAAAATGTGCACATTG
66 AATTTTCGTTATGTTATAATTCACTTTCTTTAGTTTTGTTTACATTCAATAAAATGTGCACATTG
* *
17064226 AGTCTTTTATTAACATAAGGGTCGAATAAGGGGGAGCTAGTGTACATTGTGAGTGTGCAGGAGAC
131 AGTCTTTTATTAACATAAGGGTCAAATAAGGGGGAGCTAGTGTACATTGTGAGTGTGCAAGAGAC
*
17064291 CATTAGATGGCATTCCAGGGCAATACTGGACGCTATGTCACAACAAGGGGGATCCAATGTCGCAA
196 CATTAGAAGGCATTCCAGGGCAATACTGGACGCTATGTCACAACAAGGGGGATCCAATGTCGCAA
* *
17064356 CATAGAAAGCATAATAAAGAAAGTGAGAAACTGCGTCCAATGCCGCAACACAGGCTGAGGCTATC
261 CATAGAAAGCAGAATAAAGAAAGTGAGAAACTGCCTCCAATGCCGCAACACAGGCTGAGGCTATC
* * *
17064421 ACGACATATCCCTAAATATGGCTATAGAGGGACATTTGGGTTGCTACGTCACGGCACAAGTCTTG
326 ACGACATATCCATAAATATGGCTATAGAGGAACATTTGGGTTGCTACGTCACGACACAAGTCTTG
17064486 GTGTCAAGACATCGAATTTGTGACGAGAATAAACTAGTAGAT
391 GTGTCAAGACATCGAATTTGTGACGAGAATAAACTAGTAGAT
17064528 TAAACTGTCGTAATTCGGTGCAGTAGATTAAACT-TGTTTTCACATTTAAGGAGTTTAAATACAA
1 TAAACTGTCGTAATTCGGTGCAGTAGATTAAACTAT-TTTTCACATTTAAGGAGTTTAAATACAA
* *
17064592 GAATTTTCGTTATGTTTTAATTCAGTTTCTTTAGTTTT-TTTACATTCAATAAAATGTGCACATT
65 GAATTTTCGTTATGTTATAATTCACTTTCTTTAGTTTTGTTTACATTCAATAAAATGTGCACATT
* *
17064656 GAGTCTTTTATTAACCTAAGGGTCAAATAAGGGGGAGGTAGTGTACATTGTGAGTGTGCAAGAGA
130 GAGTCTTTTATTAACATAAGGGTCAAATAAGGGGGAGCTAGTGTACATTGTGAGTGTGCAAGAGA
* * *
17064721 CCATTAGAAGGCATTTCGGGGCAATACTGGATGCTATGTCACAACAAGGGGGATCCAATGTCGCA
195 CCATTAGAAGGCATTCCAGGGCAATACTGGACGCTATGTCACAACAAGGGGGATCCAATGTCGCA
* * *
17064786 ACATAGAAAGCAGAATAGAGAAAGTGAGAAACTGCCTTCAATGCCGCAACACAGGCTGAGGCTGT
260 ACATAGAAAGCAGAATAAAGAAAGTGAGAAACTGCCTCCAATGCCGCAACACAGGCTGAGGCTAT
*
17064851 CACGACATATCCATAAATATGGCTATAGAGGAACATGTT-GGTTGCTACGTCGCGACACAAGTCT
325 CACGACATATCCATAAATATGGCTATAGAGGAACAT-TTGGGTTGCTACGTCACGACACAAGTCT
* *
17064915 TGGTGTCGAGACATCGACTTTGTGACGAGAATAA
389 TGGTGTCAAGACATCGAATTTGTGACGAGAATAA
17064949 GACACAAAGT
Statistics
Matches: 395, Mismatches: 24, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
431 298 0.75
432 97 0.25
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (432 bp):
TAAACTGTCGTAATTCGGTGCAGTAGATTAAACTATTTTTCACATTTAAGGAGTTTAAATACAAG
AATTTTCGTTATGTTATAATTCACTTTCTTTAGTTTTGTTTACATTCAATAAAATGTGCACATTG
AGTCTTTTATTAACATAAGGGTCAAATAAGGGGGAGCTAGTGTACATTGTGAGTGTGCAAGAGAC
CATTAGAAGGCATTCCAGGGCAATACTGGACGCTATGTCACAACAAGGGGGATCCAATGTCGCAA
CATAGAAAGCAGAATAAAGAAAGTGAGAAACTGCCTCCAATGCCGCAACACAGGCTGAGGCTATC
ACGACATATCCATAAATATGGCTATAGAGGAACATTTGGGTTGCTACGTCACGACACAAGTCTTG
GTGTCAAGACATCGAATTTGTGACGAGAATAAACTAGTAGAT
Found at i:17071893 original size:23 final size:23
Alignment explanation
Indices: 17071863--17071910 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
17071853 CAAGATTTCC
17071863 ATAGTTCTATTTCTAGAAAATAA
1 ATAGTTCTATTTCTAGAAAATAA
17071886 ATAGTTCTATTTCTAGAAAATAA
1 ATAGTTCTATTTCTAGAAAATAA
17071909 AT
1 AT
17071911 GAAAAACCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (23 bp):
ATAGTTCTATTTCTAGAAAATAA
Found at i:17079781 original size:109 final size:106
Alignment explanation
Indices: 17079474--17079793 Score: 444
Period size: 107 Copynumber: 3.0 Consensus size: 106
17079464 GATTAAGATA
* *
17079474 TAAAAGGATATTTGGCTATTTGGTCCAACGAGAAAATCGAAACCCAGCATATTAGGGCACGTTTC
1 TAAAAGGATATTTGGCTA-TTGGTCGAACGAGAAAATCGAAACCCAGCACATTAGGGCACGTTTC
* *
17079539 ATCGAATTTCCAAGCGCAAAACATTGCCTTATTTTGAAATTTT
65 -TCGAATTTCCAAACGCAAAACATTACCTTATTTTGAAATTTT
* * *
17079582 TAAAAGGATATTCGGTTATCTGGTCGAACGAGAAAATCG-AACCCAGCACATTAGGGCACATTTC
1 TAAAAGGATATTTGGCTAT-TGGTCGAACGAGAAAATCGAAACCCAGCACATTAGGGCACGTTT-
*
17079646 CTCGAATTTCGAAACGCAAAACATTACCTTATTTTGAAATTTT
64 CTCGAATTTCCAAACGCAAAACATTACCTTATTTTGAAATTTT
* *
17079689 TAAAAGGATATTTGGCTATTAGGTTGAACAAGAAAAATCGAAACCCAGCACATTAGGGCACGCTT
1 TAAAAGGATATTTGGCTATT-GGTCGAACGAG-AAAATCGAAACCCAGCACATTAGGGCACG-TT
* * * *
17079754 TCTCGAACTTCCAAATGCAAAATATTACCTTATTTAGAAA
63 TCTCGAATTTCCAAACGCAAAACATTACCTTATTTTGAAA
17079794 AATTTTCTTT
Statistics
Matches: 188, Mismatches: 18, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
106 1 0.01
107 88 0.47
108 42 0.22
109 54 0.29
110 3 0.02
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29
Consensus pattern (106 bp):
TAAAAGGATATTTGGCTATTGGTCGAACGAGAAAATCGAAACCCAGCACATTAGGGCACGTTTCT
CGAATTTCCAAACGCAAAACATTACCTTATTTTGAAATTTT
Found at i:17082198 original size:50 final size:49
Alignment explanation
Indices: 17082139--17082687 Score: 355
Period size: 50 Copynumber: 11.0 Consensus size: 49
17082129 TTAACTGTAA
* *
17082139 TGTCGGGGAAGTAAGATTCGCCGTCGTAGCTTCAATCTATTCCACTACAC
1 TGTCGGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTCCACTGCAC
** * * * ** * *
17082189 CATCAGGGAAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAA
1 TGTC-GGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTCCACTGCAC
* ** *
17082239 TGTTGGGGAAGCGAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCAC
1 TGTCGGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTCCACTGCAC
* * * * ** * *
17082289 CGCCTGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTAATTGCAA
1 TGTCGGGGAAGTAAGATTCGCCGTTGTAGCTTCAATC-TTTCCACTGCAC
*
17082339 TGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAC
1 TGTCGGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTCCACTGCAC
* * * * * * ** * * *
17082389 CGCCTGGGAAAGTAAGATCCGTCGTTGTGGCTTCAATCTTTTAATTACAA
1 TGTC-GGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTCCACTGCAC
* * *
17082439 TGTCGGGGAAAG-AAGATTCACTGTTGTAGCTTCAATCTATTCCACTACAC
1 TGTCGGGG-AAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTCCACTGCAC
* * * * * * ** * *
17082489 TGCCTGGGAAGTAAGATTCACCATTGTGGCTTCAATTTTTTTAATTGCAA
1 TGTCGGGGAAGTAAGATTCGCCGTTGTAGCTTCAA-TCTTTCCACTGCAC
* * ** *
17082539 TATCGGGGAAGCAAGATTCATCGTTGTAGCTTCAATTTGTTCCACTGCAC
1 TGTCGGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTCCACTGCAC
* * * * * * ** * *
17082589 CGCCTGAGAAGTAAGATTCACCGTTGT-GATTTCAATCTTTTAATTGCAA
1 TGTCGGGGAAGTAAGATTCGCCGTTGTAG-CTTCAATCTTTCCACTGCAC
* * * ** *
17082638 TGTCGGTGAGGCAAGATTCGCTATTGCAGCTTCAATCTGTTCCACTGCAC
1 TGTCGGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTCCACTGCAC
17082688 CGCTTGGGAA
Statistics
Matches: 367, Mismatches: 119, Indels: 26
0.72 0.23 0.05
Matches are distributed among these distances:
49 92 0.25
50 213 0.58
51 62 0.17
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (49 bp):
TGTCGGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTCCACTGCAC
Found at i:17082256 original size:100 final size:99
Alignment explanation
Indices: 17082118--17083410 Score: 826
Period size: 100 Copynumber: 12.9 Consensus size: 99
17082108 GGATTGGCTT
* * * * * *
17082118 CTTCAATCTGTTTAACTGTAATGTCGGGGAAGTAAGATTCGCCGTCGTAGCTTCAATCTATTCCA
1 CTTCAATCT-TTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCA
* ** *
17082183 CTACACCATCAGGGAAAGTAAGATTCGCCGTTGTGG
65 CTGCACCGCCTGGG-AAGTAAGATTCGCCGTTGTGG
* * *
17082219 CCTCAATCTTTTAATTGCAATGTTGGGGAAGCGAGATTCACCGTTGTAGCTTCAATCTGTTCCAC
1 CTTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCAC
17082284 TGCACCGCCTGGGAAGTAAGATTCGCCGTTGTGG
66 TGCACCGCCTGGGAAGTAAGATTCGCCGTTGTGG
*
17082318 CTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCA
1 CTTCAATC-TTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCA
* *
17082383 CTGCACCGCCTGGGAAAGTAAGATCCGTCGTTGTGG
65 CTGCACCGCCTGGG-AAGTAAGATTCGCCGTTGTGG
* * *
17082419 CTTCAATCTTTTAATTACAATGTCGGGGAAAG-AAGATTCACTGTTGTAGCTTCAATCTATTCCA
1 CTTCAATCTTTTAATTGCAATGTCGGGG-AAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCA
* * * *
17082483 CTACACTGCCTGGGAAGTAAGATTCACCATTGTGG
65 CTGCACCGCCTGGGAAGTAAGATTCGCCGTTGTGG
* * * *
17082518 CTTCAATTTTTTTAATTGCAATATCGGGGAAGCAAGATTCATCGTTGTAGCTTCAATTTGTTCCA
1 CTTCAA-TCTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCA
* * *
17082583 CTGCACCGCCTGAGAAGTAAGATTCACCGTTGTGA
65 CTGCACCGCCTGGGAAGTAAGATTCGCCGTTGTGG
* * * * ** *
17082618 TTTCAATCTTTTAATTGCAATGTCGGTGAGGCAAGATTCGCTATTGCAGCTTCAATCTGTTCCAC
1 CTTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCAC
* * *
17082683 TGCACCGCTTGGGAAATAAGATT---CATTGT--
66 TGCACCGCCTGGGAAGTAAGATTCGCCGTTGTGG
* ** * * ** * * * * *
17082712 CTTCGATCTACTCCACTACTGC--T-TAGGGAGATAG-AATCTACAATCATTGACCTA-CTCCAC
1 CTTCAATCT--TTTA--ATTGCAATGTCGGG-GA-AGCAAGATTC-ACCGTTG---TAGCTTCAA
** * ** * *** * * * **
17082772 TACTGCTT--AAGGAAATAGGACTGGTGGCTTAA-ATCTGCTTCCCTTCTAC
56 T-CTG-TTCCACTG-CA-CCGCCTGG-GAAGTAAGAT-T-C-GCCGTTGTGG
* *** * ** **** * * * **
17082821 CTTTAGA-AGATAAGATT-CACCGTTTTTG-ATC-TG-TTCCACTACTGTTTAGGGAGAC-AGAA
1 CTTCA-ATCTTTTA-ATTGCAATGTCGGGGAAGCAAGATT-CAC--C-G-TT--GTAG-CTTCAA
* * ** ** * * * * ** * *
17082880 TCTG--CAATCTTCAACCTACT--CCACTATTGCTTAGGGAGATAG-GA
56 TCTGTTCCA-CTGC-ACCGCCTGGGAAGTA-AGATT-CGCCG-TTGTGG
* ** * *
17082924 C-TAATGGCTTTTAATTGCAATGTCGGGGAAGCGAGATTCACCGTTGTAGCGTCAATCTGTTCCA
1 CTTCA-ATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCA
*
17082988 CTGCACCGCCTTGGAAGTAAGATTCGCCGTTGTGG
65 CTGCACCGCCTGGGAAGTAAGATTCGCCGTTGTGG
* *
17083023 CTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTCCA
1 CTTCAATC-TTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCA
* *
17083088 CTGCACCGCCTGGGAAAGTAAGATCCGTCGTTGTGG
65 CTGCACCGCCTGGG-AAGTAAGATTCGCCGTTGTGG
* * *
17083124 CTT-AATTCTTTTAATTGCAATATCGGGGAAAG-AAGATTCACTGTTGTAGCTTCAATCTATTCC
1 CTTCAA-TCTTTTAATTGCAATGTCGGGG-AAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCC
* * * *
17083187 ACTACACTGCCTGGGAAGTAAGATTCACCATTGTGG
64 ACTGCACCGCCTGGGAAGTAAGATTCGCCGTTGTGG
* * * *
17083223 CTTCAATTTTTTTAATTGCAATATCGGGGAAGCAAGATTCATCGTTGTA-CTTCAATTTGTTCCA
1 CTTCAA-TCTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCA
* * *
17083287 CTGCACCGCCTGAGAAGTAAGATTCACCGTTGTGA
65 CTGCACCGCCTGGGAAGTAAGATTCGCCGTTGTGG
* * * * **
17083322 TTTCAATCTTTTAATTGCAATGTCGGTGAGGCAAGATTCGCTATTGTAGCTTCAATCTGTTCCAC
1 CTTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCAC
* *
17083387 TGCACCGCTTGGGAAATAAGATTC
66 TGCACCGCCTGGGAAGTAAGATTC
17083411 ATTGTCTTCG
Statistics
Matches: 918, Mismatches: 206, Indels: 138
0.73 0.16 0.11
Matches are distributed among these distances:
94 7 0.01
95 3 0.00
96 14 0.02
97 5 0.01
98 41 0.04
99 256 0.28
100 445 0.48
101 80 0.09
102 11 0.01
103 11 0.01
104 6 0.01
105 8 0.01
106 9 0.01
107 11 0.01
108 5 0.01
109 4 0.00
110 2 0.00
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (99 bp):
CTTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCAC
TGCACCGCCTGGGAAGTAAGATTCGCCGTTGTGG
Found at i:17083029 original size:50 final size:50
Alignment explanation
Indices: 17082957--17083411 Score: 276
Period size: 50 Copynumber: 9.1 Consensus size: 50
17082947 CGGGGAAGCG
* * *
17082957 AGATTCACCGTTGTAGCGTCAATCTGTTCCACTGCACCGCCTTGGAAGTA
1 AGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACTGCCTGGGAAGTA
* * * ** * * * * *
17083007 AGATTCGCCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCA
1 AGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACTGCCTGGGAAGTA
* * *
17083057 AGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCACCGCCTGGGAAAGTA
1 AGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACTGCCTGGG-AAGTA
* ** * ** * * ** *
17083108 AGATCCGTCGTTGTGGCTT-AATTCT-TTTAATTGCAATATCGGGGAAAG-A
1 AGATTCACCGTTGTAGCTTCAA-TCTGTTCCACTGCACTGCCTGGG-AAGTA
* * *
17083157 AGATTCACTGTTGTAGCTTCAATCTATTCCACTACACTGCCTGGGAAGTA
1 AGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACTGCCTGGGAAGTA
* * * * ** * * ** * *
17083207 AGATTCACCATTGTGGCTTCAATTTTTTTAATTGCAATATCGGGGAAGCA
1 AGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACTGCCTGGGAAGTA
* * * *
17083257 AGATTCATCGTTGTA-CTTCAATTTGTTCCACTGCACCGCCTGAGAAGTA
1 AGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACTGCCTGGGAAGTA
* ** * * * * *
17083306 AGATTCACCGTTGT-GATTTCAATCT-TTTAATTGCAATGTC-GGTGAGGCA
1 AGATTCACCGTTGTAG-CTTCAATCTGTTCCACTGCACTGCCTGG-GAAGTA
* ** * * *
17083355 AGATTCGCTATTGTAGCTTCAATCTGTTCCACTGCACCGCTTGGGAAATA
1 AGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACTGCCTGGGAAGTA
17083405 AGATTCA
1 AGATTCA
17083412 TTGTCTTCGA
Statistics
Matches: 292, Mismatches: 102, Indels: 22
0.70 0.25 0.05
Matches are distributed among these distances:
48 1 0.00
49 89 0.30
50 177 0.61
51 25 0.09
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (50 bp):
AGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACTGCCTGGGAAGTA
Found at i:17083603 original size:704 final size:705
Alignment explanation
Indices: 17082226--17083637 Score: 2702
Period size: 704 Copynumber: 2.0 Consensus size: 705
17082216 TGGCCTCAAT
* *
17082226 CTTTTAATTGCAATGTTGGGGAAGCGAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCG
1 CTTTTAATTGCAATGTCGGGGAAGCGAGATTCACCGTTGTAGCGTCAATCTGTTCCACTGCACCG
17082291 CCTGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGAT
66 CCTGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGAT
*
17082356 TCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGGAAAGTAAGATCCGTCGTTGTGGCT
131 TCGCCGTTGTAGCTTCAATCTATTCCACTGCACCGCCTGGGAAAGTAAGATCCGTCGTTGTGGCT
*
17082421 TCAATCTTTTAATTACAATGTCGGGGAAAGAAGATTCACTGTTGTAGCTTCAATCTATTCCACTA
196 TCAATCTTTTAATTACAATATCGGGGAAAGAAGATTCACTGTTGTAGCTTCAATCTATTCCACTA
17082486 CACTGCCTGGGAAGTAAGATTCACCATTGTGGCTTCAATTTTTTTAATTGCAATATCGGGGAAGC
261 CACTGCCTGGGAAGTAAGATTCACCATTGTGGCTTCAATTTTTTTAATTGCAATATCGGGGAAGC
17082551 AAGATTCATCGTTGTAGCTTCAATTTGTTCCACTGCACCGCCTGAGAAGTAAGATTCACCGTTGT
326 AAGATTCATCGTTGTAGCTTCAATTTGTTCCACTGCACCGCCTGAGAAGTAAGATTCACCGTTGT
17082616 GATTTCAATCTTTTAATTGCAATGTCGGTGAGGCAAGATTCGCTATTGCAGCTTCAATCTGTTCC
391 GATTTCAATCTTTTAATTGCAATGTCGGTGAGGCAAGATTCGCTATTGCAGCTTCAATCTGTTCC
17082681 ACTGCACCGCTTGGGAAATAAGATTCATTGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAG
456 ACTGCACCGCTTGGGAAATAAGATTCATTGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAG
17082746 AATCTACAATCATTGACCTACTCCACTACTGCTTAAGGAAATAGGACTGGTGGCTTAAATCTGCT
521 AATCTACAATCATTGACCTACTCCACTACTGCTTAAGGAAATAGGACTGGTGGCTTAAATCTGCT
*
17082811 TCCCTTCTACCTTTAGAAGATAAGATTCACCGTTTTTGATCTGTTCCACTACTGTTTAGGGAGAC
586 TCCCTTCTACCTTTAGAAGATAAGATTCACCATTTTTGATCTGTTCCACTACTGTTTAGGGAGAC
* *
17082876 AGAATCTGCAATCTTCAACCTACTCCACTATTGCTTAGGGAGATAGGACTAATGG
651 AAAATCTGCAATCTTCAACCTACTCCACTATTGCTTAGGGAGATAGCACTAATGG
17082931 CTTTTAATTGCAATGTCGGGGAAGCGAGATTCACCGTTGTAGCGTCAATCTGTTCCACTGCACCG
1 CTTTTAATTGCAATGTCGGGGAAGCGAGATTCACCGTTGTAGCGTCAATCTGTTCCACTGCACCG
*
17082996 CCTTGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGAT
66 CCTGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGAT
17083061 TCGCCGTTGTAGCTTCAATCTATTCCACTGCACCGCCTGGGAAAGTAAGATCCGTCGTTGTGGCT
131 TCGCCGTTGTAGCTTCAATCTATTCCACTGCACCGCCTGGGAAAGTAAGATCCGTCGTTGTGGCT
*
17083126 T-AATTCTTTTAATTGCAATATCGGGGAAAGAAGATTCACTGTTGTAGCTTCAATCTATTCCACT
196 TCAA-TCTTTTAATTACAATATCGGGGAAAGAAGATTCACTGTTGTAGCTTCAATCTATTCCACT
17083190 ACACTGCCTGGGAAGTAAGATTCACCATTGTGGCTTCAATTTTTTTAATTGCAATATCGGGGAAG
260 ACACTGCCTGGGAAGTAAGATTCACCATTGTGGCTTCAATTTTTTTAATTGCAATATCGGGGAAG
17083255 CAAGATTCATCGTTGTA-CTTCAATTTGTTCCACTGCACCGCCTGAGAAGTAAGATTCACCGTTG
325 CAAGATTCATCGTTGTAGCTTCAATTTGTTCCACTGCACCGCCTGAGAAGTAAGATTCACCGTTG
*
17083319 TGATTTCAATCTTTTAATTGCAATGTCGGTGAGGCAAGATTCGCTATTGTAGCTTCAATCTGTTC
390 TGATTTCAATCTTTTAATTGCAATGTCGGTGAGGCAAGATTCGCTATTGCAGCTTCAATCTGTTC
17083384 CACTGCACCGCTTGGGAAATAAGATTCATTGTCTTCGATCTACTCCACTACTGCTTAGGGAGATA
455 CACTGCACCGCTTGGGAAATAAGATTCATTGTCTTCGATCTACTCCACTACTGCTTAGGGAGATA
*
17083449 GAATCTACTATCATTGACCTACTCCACTACTGCTTAAGGAAATAGGACTGGTGGCTTAAATCTGC
520 GAATCTACAATCATTGACCTACTCCACTACTGCTTAAGGAAATAGGACTGGTGGCTTAAATCTGC
17083514 TTCCCTTCTACCTTTAGAAGATAAGATTCACCATTTTTGATCTGTTCCACTACTGTTTAGGGAGA
585 TTCCCTTCTACCTTTAGAAGATAAGATTCACCATTTTTGATCTGTTCCACTACTGTTTAGGGAGA
17083579 CAAAATCTGCAATCTTCAACCTACTCCACTATTGCTTAGGGAGATAGCACTAATGG
650 CAAAATCTGCAATCTTCAACCTACTCCACTATTGCTTAGGGAGATAGCACTAATGG
17083635 CTT
1 CTT
17083638 AAATTTGCTT
Statistics
Matches: 695, Mismatches: 11, Indels: 3
0.98 0.02 0.00
Matches are distributed among these distances:
704 363 0.52
705 332 0.48
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (705 bp):
CTTTTAATTGCAATGTCGGGGAAGCGAGATTCACCGTTGTAGCGTCAATCTGTTCCACTGCACCG
CCTGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGAT
TCGCCGTTGTAGCTTCAATCTATTCCACTGCACCGCCTGGGAAAGTAAGATCCGTCGTTGTGGCT
TCAATCTTTTAATTACAATATCGGGGAAAGAAGATTCACTGTTGTAGCTTCAATCTATTCCACTA
CACTGCCTGGGAAGTAAGATTCACCATTGTGGCTTCAATTTTTTTAATTGCAATATCGGGGAAGC
AAGATTCATCGTTGTAGCTTCAATTTGTTCCACTGCACCGCCTGAGAAGTAAGATTCACCGTTGT
GATTTCAATCTTTTAATTGCAATGTCGGTGAGGCAAGATTCGCTATTGCAGCTTCAATCTGTTCC
ACTGCACCGCTTGGGAAATAAGATTCATTGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAG
AATCTACAATCATTGACCTACTCCACTACTGCTTAAGGAAATAGGACTGGTGGCTTAAATCTGCT
TCCCTTCTACCTTTAGAAGATAAGATTCACCATTTTTGATCTGTTCCACTACTGTTTAGGGAGAC
AAAATCTGCAATCTTCAACCTACTCCACTATTGCTTAGGGAGATAGCACTAATGG
Found at i:17083615 original size:132 final size:131
Alignment explanation
Indices: 17083415--17083775 Score: 454
Period size: 132 Copynumber: 2.7 Consensus size: 131
17083405 AGATTCATTG
* * *
17083415 TCTTCGATCTACTCCACTACTGCTTAGGGAGATAGAATCTACTATCATTGACCTACTCCACTACT
1 TCTTCGATCTACTCCACTACTGCTTAGGGAGACAGAATCTGCAATC-TTGACCTACTCCACTACT
* * ** * * *
17083480 GCTTAAGGAAATAGGACTGGTGGCTTAAATCTGCTTC-CCTTCTACCTTTAGAAGATAAGATTCA
65 GCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCC-ACTACATTGAGAAGATAAGATTCA
17083544 CCA
129 CCA
* * ** * * * *
17083547 TTTTTGATCTGTTCCACTACTGTTTAGGGAGACAAAATCTGCAATCTTCAACCTACTCCACTATT
1 TCTTCGATCTACTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTT-GACCTACTCCACTACT
* * *
17083612 GCTTAGGGAGATAGCACTAATGGCTTAAATTTGCTTCTCCACTATATTGAGAAGATAAGATTCAC
65 GCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTACATTGAGAAGATAAGATTCAC
17083677 CA
130 CA
* * *
17083679 TCTTCGATCTACTCCACTACTGCTTAAGGAGACAGAATCTGCAATCTTTGACTTATTCCACTACT
1 TCTTCGATCTACTCCACTACTGCTTAGGGAGACAGAATCTGCAATC-TTGACCTACTCCACTACT
*
17083744 GCTTAGGGAGATAGGGCTAATGGCTTAAATCT
65 GCTTAGGGAGATAGGACTAATGGCTTAAATCT
17083776 TTTAATTGCA
Statistics
Matches: 191, Mismatches: 35, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
131 2 0.01
132 185 0.97
133 4 0.02
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (131 bp):
TCTTCGATCTACTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTGACCTACTCCACTACTG
CTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTACATTGAGAAGATAAGATTCACC
A
Found at i:17083847 original size:50 final size:50
Alignment explanation
Indices: 17083792--17084162 Score: 228
Period size: 50 Copynumber: 7.4 Consensus size: 50
17083782 TGCAATGTCG
* * *
17083792 GGGAAGCGAGATTCACCGTTGTAGCGTCAATCTGTTCCACTGCACCGCCT
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACCGCCT
* * * * ** * ** * *
17083842 TGGAAGTAAGATTCACCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCG
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACCGCCT
*
17083892 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTATTCCACTACACCGCCT
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACCGCCT
* * ** * * ** * ** * *
17083942 GGGAAAGTAAGATCCGTCGTTGTGGCTTCATTCT-TTTAATTGCAATGTCG
1 GGG-AAGCAAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACCGCCT
** * * *
17083992 GGGAAAG-AAGATTCACTATTGTAGCTTCAATCTATTCCACTACACTGCTT
1 GGG-AAGCAAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACCGCCT
* * * * * ** * ****
17084042 GGGAAGTAAGATTCACCATTGTGGCTTCAATTTTTTTAATTGCAATATC-
1 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACCGCCT
* * * *
17084091 GAGGAAGCAAGATTCATCGTTGTA-CTTCAATTTGTTCTACTGCACCGCCT
1 G-GGAAGCAAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACCGCCT
* *
17084141 GGAAAGTAAGATTCACCGTTGT
1 GGGAAGCAAGATTCACCGTTGT
17084163 GATTTCAATT
Statistics
Matches: 235, Mismatches: 81, Indels: 11
0.72 0.25 0.03
Matches are distributed among these distances:
49 58 0.25
50 153 0.65
51 24 0.10
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.32
Consensus pattern (50 bp):
GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACCGCCT
Found at i:17083894 original size:100 final size:100
Alignment explanation
Indices: 17083764--17084254 Score: 602
Period size: 100 Copynumber: 4.9 Consensus size: 100
17083754 ATAGGGCTAA
* * *
17083764 TGGCTTAAATC-TTTTAATTGCAATGTCGGGGAAGCGAGATTCACCGTTGTAGCGTCAATCTGTT
1 TGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTT
17083828 CCACTGCACCGCCTTGGAAGTAAGATTCACCGTTG
66 CCACTGCACCGCCTTGGAAGTAAGATTCACCGTTG
*
17083863 TGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTATT
1 TGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTT
* * * **
17083928 CCACTACACCGCCTGGGAAAGTAAGATCCGTCGTTG
66 CCACTGCACCGCCTTGG-AAGTAAGATTCACCGTTG
* ** *
17083964 TGGCTTCATTC-TTTTAATTGCAATGTCGGGGAAAG-AAGATTCACTATTGTAGCTTCAATCTAT
1 TGGCTTCAATCTTTTTAATTGCAATGTCGGGG-AAGCAAGATTCACCGTTGTAGCTTCAATCTGT
* * *
17084027 TCCACTACACTG-CTTGGGAAGTAAGATTCACCATTG
65 TCCACTGCACCGCCTT-GGAAGTAAGATTCACCGTTG
* * * * *
17084063 TGGCTTCAATTTTTTTAATTGCAATATCGAGGAAGCAAGATTCATCGTTGTA-CTTCAATTTGTT
1 TGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTT
*
17084127 CTACTGCACCGCC-TGGAAAGTAAGATTCACCGTTG
66 CCACTGCACCGCCTTGG-AAGTAAGATTCACCGTTG
** * * * * **
17084162 TGATTTCAAT-TTTTTAATTGCAATGTCGGTGAGGTAAGATTCGCTATTGTAGCTTCAATCTGTT
1 TGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTT
*
17084226 CCACTGCACCG-CTTGGGAAATAAGATTCA
66 CCACTGCACCGCCTT-GGAAGTAAGATTCA
17084255 TTGTCTTCGA
Statistics
Matches: 336, Mismatches: 45, Indels: 22
0.83 0.11 0.05
Matches are distributed among these distances:
98 35 0.10
99 115 0.34
100 158 0.47
101 28 0.08
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.33
Consensus pattern (100 bp):
TGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTT
CCACTGCACCGCCTTGGAAGTAAGATTCACCGTTG
Found at i:17084316 original size:843 final size:836
Alignment explanation
Indices: 17082723--17084484 Score: 3035
Period size: 843 Copynumber: 2.1 Consensus size: 836
17082713 TTCGATCTAC
* * * * * * *
17082723 TCCACTACTGCTTAGGGAGATAGAATCTACAATCATT-GACCTACTCCACTACTGCTTAAGGAAA
1 TCCACTACTGTTTAGGGAGACAGAATCTGCAATC-TTCAACCTACTCCACTATTGCTTAGGGAGA
** * * * * * *
17082787 TAGGACTGGTGGCTTAAATCTGCTTCCCTTCTACCTTTAGAAGATAAGATTCACCGTTTTTGATC
65 TAGGACTAATGGCTTAAATCTGCTTCCCTACTACATTGAGAAGATAAGATTCACCATCTTCGATC
** * * *
17082852 TGTTCCACTACTGTTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTATTGCTTAGGGA
130 TACTCCACTACTGCTTAAGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGA
17082917 GATAGGACTAATGGCTTTTAATTGCAATGTCGGGGAAGCGAGATTCACCGTTGTAGCGTCAATCT
195 GATAGGACTAATGGCTTTTAATTGCAATGTCGGGGAAGCGAGATTCACCGTTGTAGCGTCAATCT
*
17082982 GTTCCACTGCACCGCCTTGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTAATTGCAATGT
260 GTTCCACTGCACCGCCTTGGAAGTAAGATTCACCGTTGTGGCTTCAATCTTTTTAATTGCAATGT
* *
17083047 CGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCACCGCCTGGGAAAGTAAGAT
325 CGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTATTCCACTACACCGCCTGGGAAAGTAAGAT
*
17083112 CCGTCGTTGTGGCTTAATTCTTTTAATTGCAATATCGGGGAAAGAAGATTCACTGTTGTAGCTTC
390 CCGTCGTTGTGGCTTAATTCTTTTAATTGCAATATCGGGGAAAGAAGATTCACTATTGTAGCTTC
17083177 AATCTATTCCACTACACTGCCTGGGAAGTAAGATTCACCATTGTGGCTTCAATTTTTTTAATTGC
455 AATCTATTCCACTACACTGCCTGGGAAGTAAGATTCACCATTGTGGCTTCAATTTTTTTAATTGC
*
17083242 AATATCGGGGAAGCAAGATTCATCGTTGTACTTCAATTTGTTCCACTGCACCGCCTGAGAAGTAA
520 AATATCGAGGAAGCAAGATTCATCGTTGTACTTCAATTTGTTCCACTGCACCGCCTGAGAAGTAA
17083307 GATTCACCGTTGTGATTTCAATCTTTTAATTGCAATGTCGGTGAGGCAAGATTCGCTATTGTAGC
585 GATTCACCGTTGTGATTTCAATCTTTTAATTGCAATGTCGGTGAGGCAAGATTCGCTATTGTAGC
17083372 TTCAATCTGTTCCACTGCACCGCTTGGGAAATAAGATTCATTGTCTTCGATCTACTCCACTACTG
650 TTCAATCTGTTCCACTGCACCGCTTGGGAAATAAGATTCATTGTCTTCGATCTACTCCACTACTG
*
17083437 CTTAGGGAGATAGAATCTACTATCATTGACCTACTCCACTACTGCTTAAGGAAATAGGACTGGTG
715 CTTAGGGAGATAGAATCTACAATCATTGACCTACTCCACTACTGCTTAAGGAAATAGGACTGGTG
17083502 GCTTAAATCTGCTTCCCTTCTACCTTTAGAAGATAAGATTCACCATTTTTGATCTGT
780 GCTTAAATCTGCTTCCCTTCTACCTTTAGAAGATAAGATTCACCATTTTTGATCTGT
*
17083559 TCCACTACTGTTTAGGGAGACAAAATCTGCAATCTTCAACCTACTCCACTATTGCTTAGGGAGAT
1 TCCACTACTGTTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTATTGCTTAGGGAGAT
* * *
17083624 AGCACTAATGGCTTAAATTTGCTTCTCC-ACTATATTGAGAAGATAAGATTCACCATCTTCGATC
66 AGGACTAATGGCTTAAATCTGCTTC-CCTACTACATTGAGAAGATAAGATTCACCATCTTCGATC
** * *
17083688 TACTCCACTACTGCTTAAGGAGACAGAATCTGCAATCTTTGACTTATTCCACTACTGCTTAGGGA
130 TACTCCACTACTGCTTAAGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGA
*
17083753 GATAGGGCTAATGGCTTAAATCTTTTAATTGCAATGTCGGGGAAGCGAGATTCACCGTTGTAGCG
195 GATAGGACTAATGG-------CTTTTAATTGCAATGTCGGGGAAGCGAGATTCACCGTTGTAGCG
17083818 TCAATCTGTTCCACTGCACCGCCTTGGAAGTAAGATTCACCGTTGTGGCTTCAATCTTTTTAATT
253 TCAATCTGTTCCACTGCACCGCCTTGGAAGTAAGATTCACCGTTGTGGCTTCAATCTTTTTAATT
17083883 GCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTATTCCACTACACCGCCTGGGAAA
318 GCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTATTCCACTACACCGCCTGGGAAA
* *
17083948 GTAAGATCCGTCGTTGTGGCTTCATTCTTTTAATTGCAATGTCGGGGAAAGAAGATTCACTATTG
383 GTAAGATCCGTCGTTGTGGCTTAATTCTTTTAATTGCAATATCGGGGAAAGAAGATTCACTATTG
*
17084013 TAGCTTCAATCTATTCCACTACACTGCTTGGGAAGTAAGATTCACCATTGTGGCTTCAATTTTTT
448 TAGCTTCAATCTATTCCACTACACTGCCTGGGAAGTAAGATTCACCATTGTGGCTTCAATTTTTT
*
17084078 TAATTGCAATATCGAGGAAGCAAGATTCATCGTTGTACTTCAATTTGTTCTACTGCACCGCCTG-
513 TAATTGCAATATCGAGGAAGCAAGATTCATCGTTGTACTTCAATTTGTTCCACTGCACCGCCTGA
* *
17084142 GAAAGTAAGATTCACCGTTGTGATTTCAATTTTTTAATTGCAATGTCGGTGAGGTAAGATTCGCT
578 G-AAGTAAGATTCACCGTTGTGATTTCAATCTTTTAATTGCAATGTCGGTGAGGCAAGATTCGCT
17084207 ATTGTAGCTTCAATCTGTTCCACTGCACCGCTTGGGAAATAAGATTCATTGTCTTCGATCTACTC
642 ATTGTAGCTTCAATCTGTTCCACTGCACCGCTTGGGAAATAAGATTCATTGTCTTCGATCTACTC
17084272 CACTACTGCTTAGGGAGATAGAATCTACAATCATTGACCTACTCCACTACTGCTTAAGGAAATAG
707 CACTACTGCTTAGGGAGATAGAATCTACAATCATTGACCTACTCCACTACTGCTTAAGGAAATAG
*
17084337 GACTGGTGGCTTAAATCTGCTTCCCTTCTACCTTTAGAAGATAAGATTCACCGTTTTTGATCTGT
772 GACTGGTGGCTTAAATCTGCTTCCCTTCTACCTTTAGAAGATAAGATTCACCATTTTTGATCTGT
17084402 TCCACTACTGTTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTATTGCTTAGGGAGAT
1 TCCACTACTGTTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTATTGCTTAGGGAGAT
17084467 AGGACTAATGGCTTAAAT
66 AGGACTAATGGCTTAAAT
17084485 NNNNNNNNNN
Statistics
Matches: 872, Mismatches: 44, Indels: 13
0.94 0.05 0.01
Matches are distributed among these distances:
835 2 0.00
836 173 0.20
837 2 0.00
842 1 0.00
843 694 0.80
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (836 bp):
TCCACTACTGTTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTATTGCTTAGGGAGAT
AGGACTAATGGCTTAAATCTGCTTCCCTACTACATTGAGAAGATAAGATTCACCATCTTCGATCT
ACTCCACTACTGCTTAAGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAG
ATAGGACTAATGGCTTTTAATTGCAATGTCGGGGAAGCGAGATTCACCGTTGTAGCGTCAATCTG
TTCCACTGCACCGCCTTGGAAGTAAGATTCACCGTTGTGGCTTCAATCTTTTTAATTGCAATGTC
GGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTATTCCACTACACCGCCTGGGAAAGTAAGATC
CGTCGTTGTGGCTTAATTCTTTTAATTGCAATATCGGGGAAAGAAGATTCACTATTGTAGCTTCA
ATCTATTCCACTACACTGCCTGGGAAGTAAGATTCACCATTGTGGCTTCAATTTTTTTAATTGCA
ATATCGAGGAAGCAAGATTCATCGTTGTACTTCAATTTGTTCCACTGCACCGCCTGAGAAGTAAG
ATTCACCGTTGTGATTTCAATCTTTTAATTGCAATGTCGGTGAGGCAAGATTCGCTATTGTAGCT
TCAATCTGTTCCACTGCACCGCTTGGGAAATAAGATTCATTGTCTTCGATCTACTCCACTACTGC
TTAGGGAGATAGAATCTACAATCATTGACCTACTCCACTACTGCTTAAGGAAATAGGACTGGTGG
CTTAAATCTGCTTCCCTTCTACCTTTAGAAGATAAGATTCACCATTTTTGATCTGT
Found at i:17085030 original size:89 final size:89
Alignment explanation
Indices: 17084877--17085451 Score: 731
Period size: 89 Copynumber: 6.5 Consensus size: 89
17084867 GGACTAATGG
* * * * * *
17084877 CTTCGATCTACTTCGCTGTCAGTACAGGAAGGCAATATCTGCTATCTTTAGTCTGCTCCGCTGTC
1 CTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAATCTGCTCCACTGTC
*
17084942 AGTATAGGAAGGCAAGACTGGTTT
66 AGTACAGGAAGGCAAGACTGGTTT
* * * *
17084966 CTTCGATCTGCTTTGCCGTCAGTACAGGAAGGCAACATCTGCTATCTTTAGTCTGCTCCACTGTC
1 CTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAATCTGCTCCACTGTC
* *
17085031 AGTACAAGAATGCAAGACTGGTTT
66 AGTACAGGAAGGCAAGACTGGTTT
* * * * *
17085055 CTTCGATTTGCTTCGCCATCAGTACAGGAAGGCATGATCTGCTATCATCAATCTGCTCCACTATC
1 CTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAATCTGCTCCACTGTC
17085120 AGTACAGGAAGGCAAGACTGGTTT
66 AGTACAGGAAGGCAAGACTGGTTT
* * *
17085144 CTTCGATCTGCTTCACCGTCAGTACAGGAAGGCATA-ATCTGCTATCTTCAATCTGTTCAACTGT
1 CTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCA-AGATCTGCTATCTTCAATCTGCTCCACTGT
* *
17085208 CAATATAGGAAGGCAAGACTGGTTT
65 CAGTACAGGAAGGCAAGACTGGTTT
* ** * * * * *
17085233 CTTCGATCTGCTTCGCCGCCAGTGTAGGAGGGCAAGATCTGCTATCTTTAGTCTGTTCCGCTGTC
1 CTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAATCTGCTCCACTGTC
* *
17085298 AGTATAGGAAGGTAAGACTGGTTT
66 AGTACAGGAAGGCAAGACTGGTTT
* * * * * *
17085322 CTTCGATCTGCTTCACCGTCAGTACAGGAATGCATGATCTGCTATCTTCAATCTACTCCGCTATC
1 CTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAATCTGCTCCACTGTC
* *
17085387 AATACAGGAAGGCAAGGA-TGGTGT
66 AGTACAGGAAGGCAA-GACTGGTTT
* *
17085411 CTTCGATCTGCTTTGCCGTCAGTACAGGAAGGCATGATCTG
1 CTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTG
17085452 TAACTTCGTT
Statistics
Matches: 424, Mismatches: 59, Indels: 6
0.87 0.12 0.01
Matches are distributed among these distances:
88 1 0.00
89 421 0.99
90 2 0.00
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (89 bp):
CTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAATCTGCTCCACTGTC
AGTACAGGAAGGCAAGACTGGTTT
Found at i:17085359 original size:267 final size:267
Alignment explanation
Indices: 17084877--17085451 Score: 830
Period size: 267 Copynumber: 2.2 Consensus size: 267
17084867 GGACTAATGG
* * * * **
17084877 CTTCGATCTACTTCGCTGTCAGTACAGGAAGGCA-ATATCTGCTATCTTTAGTCTGCTCCGCTGT
1 CTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCATA-ATCTGCTATCTTCAATCTGCTCAACTGT
* * *
17084941 CAGTATAGGAAGGCAAGACTGGTTTCTTCGATCTGCTTTGCCGTCAGTACAGGAAGGCAACATCT
65 CAATATAGGAAGGCAAGACTGGTTTCTTCGATCTGCTTCGCCGCCAGTACAGGAAGGCAACATCT
* * *
17085006 GCTATCTTTAGTCTGCTCCACTGTCAGTACAAGAATGCAAGACTGGTTTCTTCGATTTGCTTCGC
130 GCTATCTTTAGTCTGCTCCACTGTCAGTACAAGAAGGCAAGACTGGTTTCTTCGATCTGCTTCAC
* *
17085071 CATCAGTACAGGAAGGCATGATCTGCTATCATCAATCTGCTCCACTATCAGTACAGGAAGGCAA-
195 CATCAGTACAGGAAGGCATGATCTGCTATCATCAATCTACTCCACTATCAATACAGGAAGGCAAG
*
17085135 GACTGGTTT
260 GA-TGGTGT
* *
17085144 CTTCGATCTGCTTCACCGTCAGTACAGGAAGGCATAATCTGCTATCTTCAATCTGTTCAACTGTC
1 CTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCATAATCTGCTATCTTCAATCTGCTCAACTGTC
** * *
17085209 AATATAGGAAGGCAAGACTGGTTTCTTCGATCTGCTTCGCCGCCAGTGTAGGAGGGCAAGATCTG
66 AATATAGGAAGGCAAGACTGGTTTCTTCGATCTGCTTCGCCGCCAGTACAGGAAGGCAACATCTG
* * * * *
17085274 CTATCTTTAGTCTGTTCCGCTGTCAGTATAGGAAGGTAAGACTGGTTTCTTCGATCTGCTTCACC
131 CTATCTTTAGTCTGCTCCACTGTCAGTACAAGAAGGCAAGACTGGTTTCTTCGATCTGCTTCACC
* * * *
17085339 GTCAGTACAGGAATGCATGATCTGCTATCTTCAATCTACTCCGCTATCAATACAGGAAGGCAAGG
196 ATCAGTACAGGAAGGCATGATCTGCTATCATCAATCTACTCCACTATCAATACAGGAAGGCAAGG
17085404 ATGGTGT
261 ATGGTGT
* *
17085411 CTTCGATCTGCTTTGCCGTCAGTACAGGAAGGCATGATCTG
1 CTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCATAATCTG
17085452 TAACTTCGTT
Statistics
Matches: 273, Mismatches: 33, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
267 270 0.99
268 3 0.01
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (267 bp):
CTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCATAATCTGCTATCTTCAATCTGCTCAACTGTC
AATATAGGAAGGCAAGACTGGTTTCTTCGATCTGCTTCGCCGCCAGTACAGGAAGGCAACATCTG
CTATCTTTAGTCTGCTCCACTGTCAGTACAAGAAGGCAAGACTGGTTTCTTCGATCTGCTTCACC
ATCAGTACAGGAAGGCATGATCTGCTATCATCAATCTACTCCACTATCAATACAGGAAGGCAAGG
ATGGTGT
Found at i:17086711 original size:14 final size:14
Alignment explanation
Indices: 17086692--17086750 Score: 55
Period size: 14 Copynumber: 3.9 Consensus size: 14
17086682 CCTCTCCTTT
17086692 TTCTTTTCTTTTTC
1 TTCTTTTCTTTTTC
17086706 TTCTTTCTTTCTTTTTC
1 TTC--T-TTTCTTTTTC
* *
17086723 TTTTTTTCTTTCTC
1 TTCTTTTCTTTTTC
*
17086737 TTTTTTTCTCTTTT
1 TTCTTTTCT-TTTT
17086751 TTTTAACAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
14 21 0.55
15 4 0.11
16 1 0.03
17 12 0.32
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (14 bp):
TTCTTTTCTTTTTC
Found at i:17086714 original size:18 final size:18
Alignment explanation
Indices: 17086691--17086745 Score: 69
Period size: 18 Copynumber: 3.1 Consensus size: 18
17086681 GCCTCTCCTT
17086691 TTTCTTTTCTTTTTCTTC
1 TTTCTTTTCTTTTTCTTC
*
17086709 TTTC-TTTCTTTTTCTTTT
1 TTTCTTTTCTTTTTC-TTC
17086727 TTTCTTTCTCTTTTT-TTC
1 TTTCTTT-TCTTTTTCTTC
17086745 T
1 T
17086746 CTTTTTTTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
17 10 0.31
18 13 0.41
19 2 0.06
20 7 0.22
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (18 bp):
TTTCTTTTCTTTTTCTTC
Found at i:17086717 original size:22 final size:21
Alignment explanation
Indices: 17086691--17086752 Score: 79
Period size: 22 Copynumber: 2.8 Consensus size: 21
17086681 GCCTCTCCTT
17086691 TTTCTTTTCTTTTTCTTCTTTC
1 TTTCTTTTCTTTTT-TTCTTTC
17086713 TTTCTTTTTCTTTTTTTCTTTC
1 TTTC-TTTTCTTTTTTTCTTTC
*
17086735 TCTTTTTTTCTCTTTTTT
1 T-TTCTTTTCT-TTTTTT
17086753 TTAACAATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
22 18 0.50
23 18 0.50
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (21 bp):
TTTCTTTTCTTTTTTTCTTTC
Found at i:17086720 original size:28 final size:28
Alignment explanation
Indices: 17086688--17086754 Score: 84
Period size: 28 Copynumber: 2.4 Consensus size: 28
17086678 TTGGCCTCTC
17086688 CTTTTTCTTTTCTT-TTTCTTCTTTCTTT
1 CTTTTTCTTTTCTTCTTTC-TCTTTCTTT
* *
17086716 CTTTTTCTTTTTTTCTTTCTCTTTTTTT
1 CTTTTTCTTTTCTTCTTTCTCTTTCTTT
17086744 CTCTTTT-TTTT
1 CT-TTTTCTTTT
17086755 AACAATTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 27 0.77
29 8 0.23
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (28 bp):
CTTTTTCTTTTCTTCTTTCTCTTTCTTT
Found at i:17086750 original size:8 final size:8
Alignment explanation
Indices: 17086698--17086751 Score: 51
Period size: 8 Copynumber: 6.9 Consensus size: 8
17086688 CTTTTTCTTT
17086698 TCTTTTTC
1 TCTTTTTC
17086706 TTCTTTCTT-
1 -TCTTT-TTC
17086715 TCTTTTTC
1 TCTTTTTC
17086723 T-TTTTT-
1 TCTTTTTC
*
17086729 TCTTTCTC
1 TCTTTTTC
*
17086737 TTTTTTTC
1 TCTTTTTC
17086745 TCTTTTT
1 TCTTTTT
17086752 TTTAACAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
6 1 0.03
7 11 0.30
8 18 0.49
9 5 0.14
10 2 0.05
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (8 bp):
TCTTTTTC
Found at i:17089127 original size:109 final size:107
Alignment explanation
Indices: 17088815--17089135 Score: 464
Period size: 108 Copynumber: 3.0 Consensus size: 107
17088805 GATTAAGATA
* *
17088815 TAAAAGGATATTTGGCTATTTGGTCCAACGAGAAAATCGAAACTCAGCACATTAGGGCACGTTTC
1 TAAAAGGATATTTGGCTA-TTGGTCGAACGAGAAAATCGAAACCCAGCACATTAGGGCACGTTTC
* *
17088880 CTGGAATTTCCAAGCACAAAACATTGCCTTATTTTGAAATTTT
65 CTCGAATTTCCAAACACAAAACATTGCCTTATTTTGAAATTTT
* * * *
17088923 TAAAAGGATATTCGGTTATCTGGTTGAACGAGAAAATCGAAACCCAGCACATTAGGGCACATTTC
1 TAAAAGGATATTTGGCTAT-TGGTCGAACGAGAAAATCGAAACCCAGCACATTAGGGCACGTTTC
*
17088988 CTCGAATTTCCAAACACAAAACATTACCTTATTTTGAAATTTT
65 CTCGAATTTCCAAACACAAAACATTGCCTTATTTTGAAATTTT
17089031 TAAAAGGATATTTGGCTATTAGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGCTT
1 TAAAAGGATATTTGGCTATT-GGTCGAACGAG-AAAATCGAAACCCAGCACATTAGGGCACG-TT
* ** * *
17089096 T-CTCGAACTTCCAAATGCAAAATATTGCCTTATTTAGAAA
63 TCCTCGAATTTCCAAACACAAAACATTGCCTTATTTTGAAA
17089136 AAAAATTTCT
Statistics
Matches: 190, Mismatches: 19, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
107 2 0.01
108 124 0.65
109 61 0.32
110 3 0.02
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29
Consensus pattern (107 bp):
TAAAAGGATATTTGGCTATTGGTCGAACGAGAAAATCGAAACCCAGCACATTAGGGCACGTTTCC
TCGAATTTCCAAACACAAAACATTGCCTTATTTTGAAATTTT
Found at i:17097598 original size:33 final size:33
Alignment explanation
Indices: 17097553--17097642 Score: 94
Period size: 33 Copynumber: 2.7 Consensus size: 33
17097543 CGGTGTTTAT
17097553 ATGTAAGACCATAGTTGGGCTATGGCA-T-TCAG
1 ATGTAAGACCATAGTTGGGCTATGGCACTAT-AG
** * *
17097585 ATGATAAGACCATAACTGGGTTATGGCACTATGG
1 ATG-TAAGACCATAGTTGGGCTATGGCACTATAG
* *
17097619 GTGTAAGACCATAGTTGGACTATG
1 ATGTAAGACCATAGTTGGGCTATG
17097643 ATACAATAAG
Statistics
Matches: 46, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
32 3 0.07
33 38 0.83
34 4 0.09
35 1 0.02
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (33 bp):
ATGTAAGACCATAGTTGGGCTATGGCACTATAG
Found at i:17097630 original size:101 final size:101
Alignment explanation
Indices: 17097417--17097643 Score: 310
Period size: 101 Copynumber: 2.2 Consensus size: 101
17097407 AATTATTCAA
* *
17097417 ATGTAACACCATGGTTGGACCATGACAGTGTTTATATGTAAGACTACAACTAGGCTATGGCATTC
1 ATGTAACACCATGGTTGGACAATGACAGTGTTTATATGTAAGACCACAACTAGGCTATGGCATTC
*
17097482 TGATGATAAGACCATAACTGGGTTATGGCACTATGG
66 AGATGATAAGACCATAACTGGGTTATGGCACTATGG
* * * * * * ** *
17097518 ACGGAATACCATGGTTGGACAATGGCGGTGTTTATATGTAAGACCATAGTTGGGCTATGGCATTC
1 ATGTAACACCATGGTTGGACAATGACAGTGTTTATATGTAAGACCACAACTAGGCTATGGCATTC
17097583 AGATGATAAGACCATAACTGGGTTATGGCACTATGG
66 AGATGATAAGACCATAACTGGGTTATGGCACTATGG
* * * *
17097619 GTGTAAGACCATAGTTGGACTATGA
1 ATGTAACACCATGGTTGGACAATGA
17097644 TACAATAAGA
Statistics
Matches: 107, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
101 107 1.00
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.28
Consensus pattern (101 bp):
ATGTAACACCATGGTTGGACAATGACAGTGTTTATATGTAAGACCACAACTAGGCTATGGCATTC
AGATGATAAGACCATAACTGGGTTATGGCACTATGG
Found at i:17100987 original size:42 final size:41
Alignment explanation
Indices: 17100905--17101041 Score: 143
Period size: 42 Copynumber: 3.3 Consensus size: 41
17100895 AAATGATTCT
* **
17100905 CGAGCTTAAATTGTTTATCCAAAATATG-TCCCTCGGAAGCA
1 CGAGCTTAAATTGTTTATCCAAAATATGAT-GCTCCTAAGCA
* *
17100946 CGAGTTTAAATTGTTAAATCCAAAATATGATGCTCCTAAGCA
1 CGAGCTTAAATTGTT-TATCCAAAATATGATGCTCCTAAGCA
* * *
17100988 CAAGCTTAAATTGTTTATCCAAAA-AAGCAATGCTCTTAAGCA
1 CGAGCTTAAATTGTTTATCCAAAATATG--ATGCTCCTAAGCA
*
17101030 CGAGATTAAATT
1 CGAGCTTAAATT
17101042 ACCATCCAAA
Statistics
Matches: 80, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
40 2 0.03
41 22 0.28
42 55 0.69
43 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.30
Consensus pattern (41 bp):
CGAGCTTAAATTGTTTATCCAAAATATGATGCTCCTAAGCA
Found at i:17101434 original size:32 final size:32
Alignment explanation
Indices: 17101380--17101442 Score: 74
Period size: 32 Copynumber: 2.0 Consensus size: 32
17101370 AGGAAAAATC
*
17101380 AAGAAATCAAATAATTTTAAAAT-ACTTTTATA
1 AAGAAATCAAATAATTTAAAAATGA-TTTTATA
* **
17101412 AAGAAATCATATTCTTTAAAAATGATTTTAT
1 AAGAAATCAAATAATTTAAAAATGATTTTAT
17101443 TTCTAATTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
32 25 0.96
33 1 0.04
ACGTcount: A:0.49, C:0.06, G:0.05, T:0.40
Consensus pattern (32 bp):
AAGAAATCAAATAATTTAAAAATGATTTTATA
Found at i:17102512 original size:13 final size:13
Alignment explanation
Indices: 17102494--17102521 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
17102484 TATAGCAGAA
17102494 TGATAGGTAGTAT
1 TGATAGGTAGTAT
17102507 TGATAGGTAGTAT
1 TGATAGGTAGTAT
17102520 TG
1 TG
17102522 TACCACCATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.32, T:0.39
Consensus pattern (13 bp):
TGATAGGTAGTAT
Found at i:17116490 original size:15 final size:15
Alignment explanation
Indices: 17116470--17116499 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
17116460 ATTATACTTC
17116470 CTTTTTCCTTTTGGG
1 CTTTTTCCTTTTGGG
*
17116485 CTTTTTCTTTTTGGG
1 CTTTTTCCTTTTGGG
17116500 AAAGAAGGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.17, G:0.20, T:0.63
Consensus pattern (15 bp):
CTTTTTCCTTTTGGG
Found at i:17123185 original size:29 final size:30
Alignment explanation
Indices: 17123135--17123194 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 30
17123125 ATATTTTTAA
* *
17123135 AAAAATAAAAAAAAAATTTAAAGTAT-TTT
1 AAAAATAAAAAAAAAATATAAAATATATTT
*
17123164 AAAATTAAAAAATAAAA-ATAAAATATATTT
1 AAAAATAAAAAA-AAAATATAAAATATATTT
17123194 A
1 A
17123195 TTTATTATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
29 18 0.69
30 8 0.31
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (30 bp):
AAAAATAAAAAAAAAATATAAAATATATTT
Found at i:17125342 original size:23 final size:23
Alignment explanation
Indices: 17125312--17125391 Score: 81
Period size: 23 Copynumber: 3.5 Consensus size: 23
17125302 ACCACATCAG
* *
17125312 TATAACATGCACAAGGTGTTGAA
1 TATAACATGCACAAGGTGCTAAA
*
17125335 TATAACATGCATATA-GTGCTAAA
1 TATAACATGCACA-AGGTGCTAAA
* * *
17125358 TGTAACACGCACAAGGCGCTAAA
1 TATAACATGCACAAGGTGCTAAA
*
17125381 TATAACCTGCA
1 TATAACATGCA
17125392 TAAAGTGTTG
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
22 1 0.02
23 43 0.96
24 1 0.02
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.24
Consensus pattern (23 bp):
TATAACATGCACAAGGTGCTAAA
Found at i:17128182 original size:152 final size:152
Alignment explanation
Indices: 17127888--17128185 Score: 436
Period size: 152 Copynumber: 2.0 Consensus size: 152
17127878 AGGCCTCAAG
* *
17127888 GGCTCGAATAAGGGACGATATGCATGTATCTTAATGGATTTTTCTATGATTATGAAATGTTTGGA
1 GGCTCAAATAAGGGACGATATGCATGTATCTTAATGGATTTTGCTATGATTATGAAATGTTTGGA
* * * *
17127953 TATTGATGATTTTAAGTTATGTTTTTACGGTAATGCTCTATAACCCTAACCCGACGACGGATACG
66 AATTGATGATTTTAAGTTACGTTTTTACGGTAATGCTCTATAACCCTAACCCGACCACGGATACA
* *
17128018 GGTGAAGTGTGTTACATTTAGT
131 GATGAAGGGTGTTACATTTAGT
* *
17128040 GGCTCAAATAAGGGACGATATGCATGTGT-TTGAATGGATTTTGCTATGGTTATGAAATGTTTGG
1 GGCTCAAATAAGGGACGATATGCATGTATCTT-AATGGATTTTGCTATGATTATGAAATGTTTGG
* ** * *
17128104 AAATTGATGATTTTAAGTTACGTTTTTACGGTAATGCTCTGTAACCCTATTCTGGCCACGGATAC
65 AAATTGATGATTTTAAGTTACGTTTTTACGGTAATGCTCTATAACCCTAACCCGACCACGGATAC
*
17128169 AGATTAAGGGTGTTACA
130 AGATGAAGGGTGTTACA
17128186 CTACCATATA
Statistics
Matches: 129, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
151 2 0.02
152 127 0.98
ACGTcount: A:0.28, C:0.12, G:0.24, T:0.36
Consensus pattern (152 bp):
GGCTCAAATAAGGGACGATATGCATGTATCTTAATGGATTTTGCTATGATTATGAAATGTTTGGA
AATTGATGATTTTAAGTTACGTTTTTACGGTAATGCTCTATAACCCTAACCCGACCACGGATACA
GATGAAGGGTGTTACATTTAGT
Found at i:17130130 original size:15 final size:14
Alignment explanation
Indices: 17130110--17130149 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
17130100 AATTTGACCC
17130110 AATATAATATTACA
1 AATATAATATTACA
*
17130124 TAATATAATAATACA
1 -AATATAATATTACA
17130139 AATTATAATAT
1 AA-TATAATAT
17130150 CAATGGTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 2 0.09
15 20 0.91
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (14 bp):
AATATAATATTACA
Found at i:17130336 original size:17 final size:16
Alignment explanation
Indices: 17130311--17130360 Score: 59
Period size: 17 Copynumber: 3.2 Consensus size: 16
17130301 TCAGTTATGA
17130311 TATATAAAATATCTAT
1 TATATAAAATATCTAT
*
17130327 TATAATAAAACATCT-T
1 TAT-ATAAAATATCTAT
*
17130343 TATA-AAAATTTCTAT
1 TATATAAAATATCTAT
17130358 TAT
1 TAT
17130361 TTAGGAGCGA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
14 7 0.24
15 5 0.17
16 7 0.24
17 10 0.34
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (16 bp):
TATATAAAATATCTAT
Found at i:17130553 original size:17 final size:17
Alignment explanation
Indices: 17130518--17130562 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 17
17130508 GGATTGAGAA
* *
17130518 AATCTAAA-CTCAGACT
1 AATCTAAACCTTAAACT
17130534 AATCTAAACCTTAAACT
1 AATCTAAACCTTAAACT
*
17130551 AATCTCAACCTT
1 AATCTAAACCTT
17130563 CCTAAAGCTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
16 8 0.32
17 17 0.68
ACGTcount: A:0.42, C:0.27, G:0.02, T:0.29
Consensus pattern (17 bp):
AATCTAAACCTTAAACT
Found at i:17131745 original size:20 final size:17
Alignment explanation
Indices: 17131724--17131757 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
17131714 AATAGATGTA
17131724 ATAATTGAACAAGATAC
1 ATAATTGAACAAGATAC
17131741 ATAATTGAACAAGATAC
1 ATAATTGAACAAGATAC
17131758 TATCTTACTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.24
Consensus pattern (17 bp):
ATAATTGAACAAGATAC
Found at i:17142165 original size:42 final size:41
Alignment explanation
Indices: 17142105--17142194 Score: 126
Period size: 41 Copynumber: 2.2 Consensus size: 41
17142095 TCCTTTAGTT
* * * *
17142105 TCACTCATTTGCACTAAAAATTTTTTAAAAAAATTCAAATAA
1 TCACTCACTTACACTAAAAA-TCTTGAAAAAAATTCAAATAA
*
17142147 TCACTCACTTACATTAAAAATCTTGAAAAAAATTCAAATAA
1 TCACTCACTTACACTAAAAATCTTGAAAAAAATTCAAATAA
17142188 TCACTCA
1 TCACTCA
17142195 ACAGCACGTA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
41 26 0.60
42 17 0.40
ACGTcount: A:0.48, C:0.18, G:0.02, T:0.32
Consensus pattern (41 bp):
TCACTCACTTACACTAAAAATCTTGAAAAAAATTCAAATAA
Found at i:17153964 original size:9 final size:8
Alignment explanation
Indices: 17153941--17154003 Score: 58
Period size: 9 Copynumber: 7.4 Consensus size: 8
17153931 ACAATTTGGC
17153941 ATAAAAT-
1 ATAAAATA
17153948 ATATAAATA
1 ATA-AAATA
17153957 ATGAAAATA
1 AT-AAAATA
17153966 ATGAAAACT-
1 AT-AAAA-TA
17153975 ATAAAATA
1 ATAAAATA
17153983 ATAATAATA
1 ATAA-AATA
17153992 ATAATAATA
1 ATAA-AATA
17154001 ATA
1 ATA
17154004 GTAACGAAGT
Statistics
Matches: 50, Mismatches: 0, Indels: 10
0.83 0.00 0.17
Matches are distributed among these distances:
7 4 0.08
8 12 0.24
9 32 0.64
10 2 0.04
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.29
Consensus pattern (8 bp):
ATAAAATA
Found at i:17153981 original size:26 final size:26
Alignment explanation
Indices: 17153943--17153993 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17153933 AATTTGGCAT
17153943 AAAATATATAAATAATGAA-AATAATG
1 AAAATATATAAATAAT-AATAATAATG
17153969 AAAACTATA-AAATAATAATAATAAT
1 AAAA-TATATAAATAATAATAATAAT
17153994 AATAATAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 2 0.09
26 17 0.74
27 4 0.17
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (26 bp):
AAAATATATAAATAATAATAATAATG
Found at i:17154022 original size:3 final size:3
Alignment explanation
Indices: 17153975--17154003 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
17153965 AATGAAAACT
17153975 ATA A-A ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
17154004 GTAACGAAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:17154961 original size:97 final size:97
Alignment explanation
Indices: 17154812--17154993 Score: 296
Period size: 97 Copynumber: 1.9 Consensus size: 97
17154802 AATTCCTAAT
*
17154812 CCCGAGCCCGGCCCGGCCCATTTTTTTAATAAACACCAAAATTTTAGTTTAAAAATAAAAAAAGT
1 CCCGAGCCCGGCCCGACCCATTTTTTTAATAAACACCAAAATTTTAG-TTAAAAATAAAAAAAGT
17154877 ATTTTAAAAATATTTTAAAATTATAAGCCCGGC
65 ATTTTAAAAATATTTTAAAATTATAAGCCCGGC
* *
17154910 CCCG-GCCCGGCCCGACCCATTTTTTTAATAAATACCATATATATTTA-TTAAAAATAAAAAAAG
1 CCCGAGCCCGGCCCGACCCATTTTTTTAATAAACACCA-AAAT-TTTAGTTAAAAATAAAAAAAG
17154973 TATTTTAAAAATATTTTAAAA
64 TATTTTAAAAATATTTTAAAA
17154994 AGCGGGGCCC
Statistics
Matches: 79, Mismatches: 3, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
97 68 0.86
98 7 0.09
99 4 0.05
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.31
Consensus pattern (97 bp):
CCCGAGCCCGGCCCGACCCATTTTTTTAATAAACACCAAAATTTTAGTTAAAAATAAAAAAAGTA
TTTTAAAAATATTTTAAAATTATAAGCCCGGC
Found at i:17154987 original size:11 final size:12
Alignment explanation
Indices: 17154967--17154995 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
17154957 TTAAAAATAA
17154967 AAAAAGTATTTT
1 AAAAAGTATTTT
17154979 AAAAA-TATTTT
1 AAAAAGTATTTT
17154990 AAAAAG
1 AAAAAG
17154996 CGGGGCCCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (12 bp):
AAAAAGTATTTT
Found at i:17155762 original size:25 final size:25
Alignment explanation
Indices: 17155712--17155758 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 25
17155702 AATTCTGGGC
*
17155712 TTTGGTTTTTTTATATTTTTTTGTA
1 TTTGGTTTTATTATATTTTTTTGTA
*
17155737 TTTGG-TTTATTAT-TTTCTTTGT
1 TTTGGTTTTATTATATTTTTTTGT
17155759 GTATGCGAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 7 0.35
25 5 0.25
ACGTcount: A:0.11, C:0.02, G:0.13, T:0.74
Consensus pattern (25 bp):
TTTGGTTTTATTATATTTTTTTGTA
Found at i:17156388 original size:217 final size:217
Alignment explanation
Indices: 17156007--17156507 Score: 675
Period size: 217 Copynumber: 2.3 Consensus size: 217
17155997 TCTGTCTACT
* * * * **
17156007 CCACTACAACTTCAGCGGTATAAGATCTGCTTGCTTAGTCTACTCCGTTGCAACTTCAGGGAGAT
1 CCACTGCAACTTCAGGGGGATAAGATCTGCTTGCTTAGTCTGCTCCACTGCAACTTCAGGGAGAT
* * * *
17156072 AAGACTAGATGTGATCTGCTCTCTGCAATTTCAGAGAGGTAAGATCTGTCATTTTAATCCACTCG
66 AAGACTAGATGCGATCTGCTCTCTGCAATTTCAGACAGATAAGATCTGTCATTTTAATCCACTCC
* * * * * * *
17156137 GCTACAATTTTAGGGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTTAGGGGGATAA
131 ACTACAACTTCAGAGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAA
*
17156202 GATTCG-TCATCTTCAATCCGCC
196 GATTGGCT-ATCTTCAATCCGCC
* *
17156224 CCATTGCAACTTCAGGGGGATAAGATCTGCTTGCTTAGTCTGCTCCACTGCAACTTTAGGGAGAT
1 CCACTGCAACTTCAGGGGGATAAGATCTGCTTGCTTAGTCTGCTCCACTGCAACTTCAGGGAGAT
* **
17156289 AAGACTAGATGCGATCTGCTCTTTGCAACTTT-AGACAGATAAGATCTGTCATTTTAATCTGCTC
66 AAGACTAGATGCGATCTGCTCTCTGCAA-TTTCAGACAGATAAGATCTGTCATTTTAATCCACTC
17156353 CACTACAACTTCAGAGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATA
130 CACTACAACTTCAGAGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATA
*
17156418 AGATTGGCTATCTTCAATCCGCT
195 AGATTGGCTATCTTCAATCCGCC
* * * * * *
17156441 CTACTGCAACTTCAGGGAGATAGGATTTACTAT-CTTCAGTCCGCTCCACTGCAACTTCAGGGAG
1 CCACTGCAACTTCAGGGGGATAAGATCTGCT-TGCTT-AGTCTGCTCCACTGCAACTTCAGGGAG
17156505 ATA
64 ATA
17156508 GGATTTGTAT
Statistics
Matches: 248, Mismatches: 32, Indels: 7
0.86 0.11 0.02
Matches are distributed among these distances:
217 215 0.87
218 33 0.13
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (217 bp):
CCACTGCAACTTCAGGGGGATAAGATCTGCTTGCTTAGTCTGCTCCACTGCAACTTCAGGGAGAT
AAGACTAGATGCGATCTGCTCTCTGCAATTTCAGACAGATAAGATCTGTCATTTTAATCCACTCC
ACTACAACTTCAGAGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAA
GATTGGCTATCTTCAATCCGCC
Found at i:17156461 original size:45 final size:44
Alignment explanation
Indices: 17156171--17156556 Score: 270
Period size: 44 Copynumber: 8.8 Consensus size: 44
17156161 TATTGGCTTT
* *
17156171 AATCTGCTCCACTGCAACTTTAGGGGGATAAGATT-CGTCATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGC-T-ATCTTC
* * * *
17156216 AATCCGCCCCATTGCAACTTCAGGGGGATAAGATCTGCT-TGCTT-
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TGCTAT-CTTC
* * ** *
17156260 AGTCTGCTCCACTGCAACTTTAGGGAGATAAGA---CTAGATGC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGCTATCTTC
* ** * ** *
17156301 GATCTGCT-CTTTGCAACTTTAGACAGATAAGATCTG-TCAT-TTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TGCT-ATCTTC
* * * ** ** *
17156344 AATCTGCTCCACTACAACTTCAGAGAGATAGGATTATTGGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGCTATCTTC
*
17156388 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTGGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-GCTATCTTC
* * * *
17156433 AATCCGCTCTACTGCAACTTCAGGGAGATAGGATTTACTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGCTATCTTC
* * *
17156478 AGTCCGCTCCACTGCAACTTCAGGGAGATAGGATTTG-TATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGCTATCTTC
* * * * *
17156522 AATCCGCTCCACTGTAACTTTAGGAAGATAGGATT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
17156557 TGTGGTTTCA
Statistics
Matches: 275, Mismatches: 51, Indels: 32
0.77 0.14 0.09
Matches are distributed among these distances:
40 23 0.08
41 6 0.02
43 12 0.04
44 121 0.44
45 108 0.39
46 4 0.01
47 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGCTATCTTC
Found at i:17156464 original size:89 final size:89
Alignment explanation
Indices: 17156171--17156556 Score: 290
Period size: 89 Copynumber: 4.4 Consensus size: 89
17156161 TATTGGCTTT
* * * * * * *
17156171 AATCTGCTCCACTGCAACTTTAGGGGGATAAGATT-CGTCATCTTCAATCCGCCCCATTGCAACT
1 AATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAC-T-AGCTTCAATCCGCTCCACTGCAACT
* *
17156235 TCAGGGGGATAAGATCT-GCT-TGCTT-
64 TCAGAGAGATAAGAT-TGGCTAT-CTTC
* * * * * * * * ** *
17156260 AGTCTGCTCCACTGCAACTTTAGGGAGATA--A-GACTAGATGCGATCTGCT-CTTTGCAACTTT
1 AATCCGCTCCACTGCAACTTCAGGGAGATAGGATTACTAGCTTCAATCCGCTCCACTGCAACTTC
* * *
17156321 AGACAGATAAGATCTGTC-AT-TTT
66 AGAGAGATAAGAT-TGGCTATCTTC
* * * * * * *
17156344 AATCTGCTCCACTACAACTTCAGAGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTC
1 AATCCGCTCCACTGCAACTTCAGGGAGATAGGATTACTAGCTTCAATCCGCTCCACTGCAACTTC
17156409 AGAGAGATAAGATTGGCTATCTTC
66 AGAGAGATAAGATTGGCTATCTTC
* * *
17156433 AATCCGCTCTACTGCAACTTCAGGGAGATAGGATTTACTATCTTCAGTCCGCTCCACTGCAACTT
1 AATCCGCTCCACTGCAACTTCAGGGAGATAGGA-TTACTAGCTTCAATCCGCTCCACTGCAACTT
* * *
17156498 CAGGGAGATAGGATTTG-TATCTTC
65 CAGAGAGATAAGATTGGCTATCTTC
* * *
17156522 AATCCGCTCCACTGTAACTTTAGGAAGATAGGATT
1 AATCCGCTCCACTGCAACTTCAGGGAGATAGGATT
17156557 TGTGGTTTCA
Statistics
Matches: 237, Mismatches: 49, Indels: 23
0.77 0.16 0.07
Matches are distributed among these distances:
83 2 0.01
84 48 0.20
85 10 0.04
86 2 0.01
87 16 0.07
88 25 0.11
89 95 0.40
90 39 0.16
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (89 bp):
AATCCGCTCCACTGCAACTTCAGGGAGATAGGATTACTAGCTTCAATCCGCTCCACTGCAACTTC
AGAGAGATAAGATTGGCTATCTTC
Found at i:17165157 original size:82 final size:82
Alignment explanation
Indices: 17165020--17165179 Score: 311
Period size: 82 Copynumber: 2.0 Consensus size: 82
17165010 AAAATAAATT
*
17165020 TCTTTACATAAAATGAACTACAAATAGGGCTTTGCCCTAATACTCAAGACCTTAATCCTCCTAAG
1 TCTTTACATAAAATGAACTACAAATAAGGCTTTGCCCTAATACTCAAGACCTTAATCCTCCTAAG
17165085 TAACGAGGCCAACAGAA
66 TAACGAGGCCAACAGAA
17165102 TCTTTACATAAAATGAACTACAAATAAGGCTTTGCCCTAATACTCAAGACCTTAATCCTCCTAAG
1 TCTTTACATAAAATGAACTACAAATAAGGCTTTGCCCTAATACTCAAGACCTTAATCCTCCTAAG
17165167 TAACGAGGCCAAC
66 TAACGAGGCCAAC
17165180 TTCTGTCCCC
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 77 1.00
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.25
Consensus pattern (82 bp):
TCTTTACATAAAATGAACTACAAATAAGGCTTTGCCCTAATACTCAAGACCTTAATCCTCCTAAG
TAACGAGGCCAACAGAA
Found at i:17165340 original size:91 final size:91
Alignment explanation
Indices: 17165185--17165362 Score: 356
Period size: 91 Copynumber: 2.0 Consensus size: 91
17165175 CCAACTTCTG
17165185 TCCCCGATCTGATTCCAACTCATACTTCACACTCAACGTATCAGCCTGTATTACCAAAGTTTGCA
1 TCCCCGATCTGATTCCAACTCATACTTCACACTCAACGTATCAGCCTGTATTACCAAAGTTTGCA
17165250 GGTAATCCGCTATCTCTCGAATTTGA
66 GGTAATCCGCTATCTCTCGAATTTGA
17165276 TCCCCGATCTGATTCCAACTCATACTTCACACTCAACGTATCAGCCTGTATTACCAAAGTTTGCA
1 TCCCCGATCTGATTCCAACTCATACTTCACACTCAACGTATCAGCCTGTATTACCAAAGTTTGCA
17165341 GGTAATCCGCTATCTCTCGAAT
66 GGTAATCCGCTATCTCTCGAAT
17165363 CTGAACCACA
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 87 1.00
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.30
Consensus pattern (91 bp):
TCCCCGATCTGATTCCAACTCATACTTCACACTCAACGTATCAGCCTGTATTACCAAAGTTTGCA
GGTAATCCGCTATCTCTCGAATTTGA
Found at i:17168845 original size:9 final size:8
Alignment explanation
Indices: 17168814--17168885 Score: 58
Period size: 9 Copynumber: 8.4 Consensus size: 8
17168804 ACAATTTGGC
17168814 ATAAAAT-
1 ATAAAATA
17168821 ATATAAATAA
1 ATA-AAAT-A
17168831 ATAAAATA
1 ATAAAATA
17168839 ATGAAAACT-
1 AT-AAAA-TA
17168848 ATAAAATA
1 ATAAAATA
17168856 ATAATAATA
1 ATAA-AATA
*
17168865 ATAATAGTA
1 ATAA-AATA
17168874 ATAATAATA
1 ATAA-AATA
17168883 ATA
1 ATA
17168886 GTAACGAAGT
Statistics
Matches: 56, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
7 4 0.07
8 15 0.27
9 33 0.59
10 4 0.07
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.29
Consensus pattern (8 bp):
ATAAAATA
Found at i:17168860 original size:3 final size:3
Alignment explanation
Indices: 17168848--17168885 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
17168838 AATGAAAACT
*
17168848 ATA A-A ATA ATA ATA ATA ATA ATA GTA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
17168886 GTAACGAAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:17169952 original size:24 final size:23
Alignment explanation
Indices: 17169924--17169969 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
17169914 AATTCTGGGC
* *
17169924 TTTGGTTTTTTATATTTTTTTGTA
1 TTTGGTTTATTAT-TTTCTTTGTA
17169948 TTTGGTTTATTATTTTCTTTGT
1 TTTGGTTTATTATTTTCTTTGT
17169970 GTATGTGGGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.11, C:0.02, G:0.13, T:0.74
Consensus pattern (23 bp):
TTTGGTTTATTATTTTCTTTGTA
Found at i:17177640 original size:34 final size:34
Alignment explanation
Indices: 17177597--17177664 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
17177587 GTGCTTAGTC
*
17177597 AAACAACTTCAGCATCAAATTGCGAACGAAATTG
1 AAACAACTTCAGCATCAAATAGCGAACGAAATTG
*
17177631 AAACAACTTCAGTATCAAATAGCGAACGAAATTG
1 AAACAACTTCAGCATCAAATAGCGAACGAAATTG
17177665 GAGCACATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.46, C:0.19, G:0.15, T:0.21
Consensus pattern (34 bp):
AAACAACTTCAGCATCAAATAGCGAACGAAATTG
Found at i:17184824 original size:21 final size:20
Alignment explanation
Indices: 17184800--17184842 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
17184790 TCCATACATT
*
17184800 ATCTTTAAATTTACATTTATC
1 ATCTTCAAATTTACATTT-TC
*
17184821 ATCTTCAAATTTTCATTTTC
1 ATCTTCAAATTTACATTTTC
17184841 AT
1 AT
17184843 GCATGACTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.30, C:0.16, G:0.00, T:0.53
Consensus pattern (20 bp):
ATCTTCAAATTTACATTTTC
Found at i:17185227 original size:18 final size:18
Alignment explanation
Indices: 17185204--17185238 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
17185194 ATAAGCAATT
*
17185204 TTTTTTATTCTTTTTTTA
1 TTTTTTATCCTTTTTTTA
17185222 TTTTTTATCCTTTTTTT
1 TTTTTTATCCTTTTTTT
17185239 TCTTTCTTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.83
Consensus pattern (18 bp):
TTTTTTATCCTTTTTTTA
Found at i:17192442 original size:21 final size:22
Alignment explanation
Indices: 17192362--17192437 Score: 93
Period size: 21 Copynumber: 3.5 Consensus size: 22
17192352 CAAAACAACA
* *
17192362 GTTTCTCCCCTCGTTCCTGCTG
1 GTTTCTCCCCTCGTTCTTACTG
*
17192384 GTTTCT-CCCTTGTTCTTACTG
1 GTTTCTCCCCTCGTTCTTACTG
* *
17192405 GTTTGT-CCCTCGTTTTTACTG
1 GTTTCTCCCCTCGTTCTTACTG
17192426 GTTTCTCCCCTC
1 GTTTCTCCCCTC
17192438 TTTTTTGCTT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
21 35 0.76
22 11 0.24
ACGTcount: A:0.03, C:0.34, G:0.16, T:0.47
Consensus pattern (22 bp):
GTTTCTCCCCTCGTTCTTACTG
Found at i:17194504 original size:6 final size:6
Alignment explanation
Indices: 17194493--17194531 Score: 60
Period size: 6 Copynumber: 6.2 Consensus size: 6
17194483 AGCAACCGTA
17194493 AATGGG AATGGG AAATGGG AATGGG AATGGG AAATGGG A
1 AATGGG AATGGG -AATGGG AATGGG AATGGG -AATGGG A
17194532 GGAGGGGAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 19 0.61
7 12 0.39
ACGTcount: A:0.38, C:0.00, G:0.46, T:0.15
Consensus pattern (6 bp):
AATGGG
Found at i:17194510 original size:13 final size:13
Alignment explanation
Indices: 17194492--17194662 Score: 77
Period size: 13 Copynumber: 12.6 Consensus size: 13
17194482 AAGCAACCGT
17194492 AAATGGGAATGGG
1 AAATGGGAATGGG
17194505 AAATGGGAATGGG
1 AAATGGGAATGGG
17194518 -AATGGGAAATGGG
1 AAATGGG-AATGGG
* * *
17194531 AGGAGGGGAAT-CG
1 A-AATGGGAATGGG
*
17194544 --AT-GGAAGAGGG
1 AAATGGGAA-TGGG
17194555 AAAATGGGAATGGG
1 -AAATGGGAATGGG
17194569 AAATGGGAGGA-GGG
1 AAATGGGA--ATGGG
* **
17194583 CACGGTGGAATAGGGG
1 AAATG-GGAAT--GGG
17194599 AAATGGGAATGGG
1 AAATGGGAATGGG
17194612 AAATGGGAGGA-GGG
1 AAATGGGA--ATGGG
* **
17194626 CACGGTGGAATAGGGG
1 AAATG-GGAAT--GGG
17194642 AAATGGGAATGGG
1 AAATGGGAATGGG
17194655 AAATGGGA
1 AAATGGGA
17194663 GGAGGGCACG
Statistics
Matches: 118, Mismatches: 19, Indels: 42
0.66 0.11 0.23
Matches are distributed among these distances:
9 4 0.03
10 1 0.01
11 1 0.01
12 6 0.05
13 52 0.44
14 18 0.15
15 26 0.22
16 10 0.08
ACGTcount: A:0.36, C:0.03, G:0.49, T:0.12
Consensus pattern (13 bp):
AAATGGGAATGGG
Found at i:17194606 original size:43 final size:43
Alignment explanation
Indices: 17194512--17194678 Score: 280
Period size: 43 Copynumber: 3.8 Consensus size: 43
17194502 GGGAAATGGG
* * * *
17194512 AATGGGAATGGGAAATGGGAGGAGGGGAATCGATGGAAGAGGGAA
1 AATGGGAATGGGAAATGGGAGGA-GGGCA-CGGTGGAATAGGGGA
17194557 AATGGGAATGGGAAATGGGAGGAGGGCACGGTGGAATAGGGGA
1 AATGGGAATGGGAAATGGGAGGAGGGCACGGTGGAATAGGGGA
17194600 AATGGGAATGGGAAATGGGAGGAGGGCACGGTGGAATAGGGGA
1 AATGGGAATGGGAAATGGGAGGAGGGCACGGTGGAATAGGGGA
17194643 AATGGGAATGGGAAATGGGAGGAGGGCACGGTGGAA
1 AATGGGAATGGGAAATGGGAGGAGGGCACGGTGGAA
17194679 GGGGGGAATC
Statistics
Matches: 118, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
43 91 0.77
44 4 0.03
45 23 0.19
ACGTcount: A:0.34, C:0.04, G:0.50, T:0.11
Consensus pattern (43 bp):
AATGGGAATGGGAAATGGGAGGAGGGCACGGTGGAATAGGGGA
Found at i:17194843 original size:29 final size:29
Alignment explanation
Indices: 17194732--17194869 Score: 231
Period size: 30 Copynumber: 4.7 Consensus size: 29
17194722 CATTGTATTT
* *
17194732 TGTATTTTAAAAATAAATATATATATGTAA
1 TGTATTTTAAAAATAAA-AAATATATGTAG
17194762 TGTATTTTAAAAATAAAGAAATATATGTAG
1 TGTATTTTAAAAATAAA-AAATATATGTAG
17194792 TGTATTTTAAAAATAAAAAAATATATGTAG
1 TGTATTTTAAAAAT-AAAAAATATATGTAG
17194822 TGTATTTTAAAAATAAAAAATATATGTAG
1 TGTATTTTAAAAATAAAAAATATATGTAG
17194851 TGTATTTTAAAAATAAAAA
1 TGTATTTTAAAAATAAAAA
17194870 NNNNNNNNNN
Statistics
Matches: 104, Mismatches: 3, Indels: 3
0.95 0.03 0.03
Matches are distributed among these distances:
29 34 0.33
30 67 0.64
31 3 0.03
ACGTcount: A:0.52, C:0.00, G:0.09, T:0.38
Consensus pattern (29 bp):
TGTATTTTAAAAATAAAAAATATATGTAG
Found at i:17199358 original size:21 final size:21
Alignment explanation
Indices: 17199334--17199384 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
17199324 CATTGTTTCT
*
17199334 AATCTCACCGCTACAGTATCC
1 AATCTCACCGCTACAGTAACC
*
17199355 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
17199376 AATCTCACC
1 AATCTCACC
17199385 ACCACCGCTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.31, C:0.37, G:0.08, T:0.24
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:17203486 original size:11 final size:10
Alignment explanation
Indices: 17203457--17203714 Score: 83
Period size: 10 Copynumber: 24.4 Consensus size: 10
17203447 AATCACGTTC
17203457 AAAATTA-TA
1 AAAATTATTA
17203466 GAAAATTATTA
1 -AAAATTATTA
17203477 AAATATTATTA
1 AAA-ATTATTA
17203488 AAAATTA-TA
1 AAAATTATTA
17203497 AAAATATATT-
1 AAAAT-TATTA
*
17203507 GAAATTATTA
1 AAAATTATTA
*
17203517 AAAACGTCCA-TA
1 AAAA--T-TATTA
* *
17203529 ATGAACTTA-GA
1 A--AAATTATTA
*
17203540 CAAAATAATTAAA
1 -AAAATTATT--A
17203553 CAAAATTA-TA
1 -AAAATTATTA
17203563 GAAAATTATTA
1 -AAAATTATTA
17203574 AAATATTATTA
1 AAA-ATTATTA
17203585 AAAATTA-TA
1 AAAATTATTA
17203594 AAAATATATT-
1 AAAAT-TATTA
*
17203604 GAAATTATTA
1 AAAATTATTA
*
17203614 AAAACGTCCA-TA
1 AAAA--T-TATTA
* *
17203626 ATGAACTTA-GA
1 A--AAATTATTA
*
17203637 CAAAATAATTAAA
1 -AAAATTATT--A
17203650 CAAAATTA-TA
1 -AAAATTATTA
17203660 GAAAATTATTA
1 -AAAATTATTA
17203671 AAATATTATTA
1 AAA-ATTATTA
17203682 AAAATTA-TA
1 AAAATTATTA
17203691 AAAATATATT-
1 AAAAT-TATTA
*
17203701 GAAATTATTA
1 AAAATTATTA
17203711 AAAA
1 AAAA
17203715 CGTCCATAAT
Statistics
Matches: 191, Mismatches: 24, Indels: 66
0.68 0.09 0.23
Matches are distributed among these distances:
9 33 0.17
10 79 0.41
11 43 0.23
12 14 0.07
13 18 0.09
14 4 0.02
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.33
Consensus pattern (10 bp):
AAAATTATTA
Found at i:17203491 original size:21 final size:19
Alignment explanation
Indices: 17203467--17203519 Score: 70
Period size: 21 Copynumber: 2.7 Consensus size: 19
17203457 AAAATTATAG
17203467 AAAATTATTAAAATATTATT
1 AAAATTATTAAAATA-TATT
*
17203487 AAAAATTATAAAAATATATT
1 -AAAATTATTAAAATATATT
*
17203507 GAAATTATTAAAA
1 AAAATTATTAAAA
17203520 ACGTCCATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 11 0.38
20 4 0.14
21 14 0.48
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (19 bp):
AAAATTATTAAAATATATT
Found at i:17203520 original size:21 final size:19
Alignment explanation
Indices: 17203468--17203520 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
17203458 AAATTATAGA
*
17203468 AAATTATTAAAATATTATT
1 AAATTATTAAAAAATTATT
*
17203487 AAA-AATTATAAAAATATATT
1 AAATTATTA-AAAAAT-TATT
17203507 GAAATTATTAAAAA
1 -AAATTATTAAAAA
17203521 CGTCCATAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
18 4 0.15
19 8 0.30
20 4 0.15
21 7 0.26
22 4 0.15
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (19 bp):
AAATTATTAAAAAATTATT
Found at i:17203563 original size:97 final size:97
Alignment explanation
Indices: 17203456--17203789 Score: 627
Period size: 97 Copynumber: 3.4 Consensus size: 97
17203446 AAATCACGTT
17203456 CAAAATTATAGAAAATTATTAAAATATTATTAAAAATTATAAAAATATATTGAAATTATTAAAAA
1 CAAAATTATAGAAAATTATTAAAATATTATTAAAAATTATAAAAATATATTGAAATTATTAAAAA
17203521 CGTCCATAATGAACTTAGACAAAATAATTAAA
66 CGTCCATAATGAACTTAGACAAAATAATTAAA
17203553 CAAAATTATAGAAAATTATTAAAATATTATTAAAAATTATAAAAATATATTGAAATTATTAAAAA
1 CAAAATTATAGAAAATTATTAAAATATTATTAAAAATTATAAAAATATATTGAAATTATTAAAAA
17203618 CGTCCATAATGAACTTAGACAAAATAATTAAA
66 CGTCCATAATGAACTTAGACAAAATAATTAAA
17203650 CAAAATTATAGAAAATTATTAAAATATTATTAAAAATTATAAAAATATATTGAAATTATTAAAAA
1 CAAAATTATAGAAAATTATTAAAATATTATTAAAAATTATAAAAATATATTGAAATTATTAAAAA
17203715 CGTCCATAATGAACTTAGACAAAATAATTAAA
66 CGTCCATAATGAACTTAGACAAAATAATTAAA
*
17203747 CAAAATTATAGAAAATTATTTAAGA-ATTA-TAATAAATTATAAA
1 CAAAATTATAGAAAATTA-TTAAAATATTATTAA-AAATTATAAA
17203790 TTATTAAACT
Statistics
Matches: 234, Mismatches: 1, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
96 3 0.01
97 226 0.97
98 5 0.02
ACGTcount: A:0.57, C:0.06, G:0.05, T:0.32
Consensus pattern (97 bp):
CAAAATTATAGAAAATTATTAAAATATTATTAAAAATTATAAAAATATATTGAAATTATTAAAAA
CGTCCATAATGAACTTAGACAAAATAATTAAA
Found at i:17203617 original size:20 final size:22
Alignment explanation
Indices: 17203541--17203617 Score: 74
Period size: 21 Copynumber: 3.6 Consensus size: 22
17203531 GAACTTAGAC
* *
17203541 AAAATAATTAAACAAAATTA-TA
1 AAAATTATTAAA-AATATTATTA
17203563 GAAAATTATT-AAAATATTATTA
1 -AAAATTATTAAAAATATTATTA
17203585 AAAATTA-TAAAAATA-TATT-
1 AAAATTATTAAAAATATTATTA
*
17203604 GAAATTATTAAAAA
1 AAAATTATTAAAAA
17203618 CGTCCATAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
19 6 0.12
20 11 0.23
21 19 0.40
22 4 0.08
23 8 0.17
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (22 bp):
AAAATTATTAAAAATATTATTA
Found at i:17203617 original size:21 final size:19
Alignment explanation
Indices: 17203565--17203617 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
17203555 AAATTATAGA
*
17203565 AAATTATTAAAATATTATT
1 AAATTATTAAAAAATTATT
*
17203584 AAA-AATTATAAAAATATATT
1 AAATTATTA-AAAAAT-TATT
17203604 GAAATTATTAAAAA
1 -AAATTATTAAAAA
17203618 CGTCCATAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
18 4 0.15
19 8 0.30
20 4 0.15
21 7 0.26
22 4 0.15
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (19 bp):
AAATTATTAAAAAATTATT
Found at i:17203714 original size:20 final size:22
Alignment explanation
Indices: 17203638--17203714 Score: 74
Period size: 21 Copynumber: 3.6 Consensus size: 22
17203628 GAACTTAGAC
* *
17203638 AAAATAATTAAACAAAATTA-TA
1 AAAATTATTAAA-AATATTATTA
17203660 GAAAATTATT-AAAATATTATTA
1 -AAAATTATTAAAAATATTATTA
17203682 AAAATTA-TAAAAATA-TATT-
1 AAAATTATTAAAAATATTATTA
*
17203701 GAAATTATTAAAAA
1 AAAATTATTAAAAA
17203715 CGTCCATAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
19 6 0.12
20 11 0.23
21 19 0.40
22 4 0.08
23 8 0.17
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (22 bp):
AAAATTATTAAAAATATTATTA
Found at i:17203714 original size:21 final size:19
Alignment explanation
Indices: 17203662--17203714 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
17203652 AAATTATAGA
*
17203662 AAATTATTAAAATATTATT
1 AAATTATTAAAAAATTATT
*
17203681 AAA-AATTATAAAAATATATT
1 AAATTATTA-AAAAAT-TATT
17203701 GAAATTATTAAAAA
1 -AAATTATTAAAAA
17203715 CGTCCATAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
18 4 0.15
19 8 0.30
20 4 0.15
21 7 0.26
22 4 0.15
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (19 bp):
AAATTATTAAAAAATTATT
Found at i:17204834 original size:16 final size:16
Alignment explanation
Indices: 17204809--17204841 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
17204799 CTTAAGGTTG
*
17204809 GTTTAGGGTTTTGTTT
1 GTTTAAGGTTTTGTTT
17204825 GTTTAAGGTTTTGTTT
1 GTTTAAGGTTTTGTTT
17204841 G
1 G
17204842 AGGGTTTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.09, C:0.00, G:0.30, T:0.61
Consensus pattern (16 bp):
GTTTAAGGTTTTGTTT
Found at i:17210627 original size:37 final size:37
Alignment explanation
Indices: 17210576--17210651 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 37
17210566 TTCCAAAAAT
*
17210576 AATATTATTTTAATAGT-TTAATATTAAATTAA-ATTA
1 AATATTATCTTAATAGTGTT-ATATTAAATTAATATTA
* *
17210612 AATATTTATCTTAATAGTGTTTTATTAATTTAATATTA
1 AATA-TTATCTTAATAGTGTTATATTAAATTAATATTA
17210650 AA
1 AA
17210652 GTGATTAAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
36 4 0.12
37 22 0.65
38 8 0.24
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.51
Consensus pattern (37 bp):
AATATTATCTTAATAGTGTTATATTAAATTAATATTA
Found at i:17211252 original size:29 final size:29
Alignment explanation
Indices: 17211210--17211269 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
17211200 CTTCCCAAAG
17211210 CCTTATATTTATAGTAGAGCAATGGGGTT
1 CCTTATATTTATAGTAGAGCAATGGGGTT
17211239 CCTTATATTTATAGTAGAGCAATGGGGTT
1 CCTTATATTTATAGTAGAGCAATGGGGTT
17211268 CC
1 CC
17211270 CAAAAAACGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (29 bp):
CCTTATATTTATAGTAGAGCAATGGGGTT
Found at i:17212547 original size:2 final size:2
Alignment explanation
Indices: 17212542--17212566 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
17212532 TTTTTGCAAG
17212542 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
17212567 GATAAGAGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Done.