Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47972186
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2603476 characters in sequence are not A, C, G, or T
File 76 of 145
Found at i:25767122 original size:27 final size:26
Alignment explanation
Indices: 25766575--25767122 Score: 486
Period size: 27 Copynumber: 20.4 Consensus size: 26
25766565 CCACAAAATA
* ** *
25766575 GGTAAAATGATCGAAATATCCTAAAAG
1 GGTAAAATGACCGAAATA-CCCCATAG
*
25766602 GATAAAATGACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATA-CCCCATAG
* *
25766629 GATAGAATGACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATA-CCCCATAG
* *
25766656 GGTAGAATAACCGAAATACCCCATAG
1 GGTAAAATGACCGAAATACCCCATAG
* *
25766682 GGTAGAATGACCGAAATATGCCCATAG
1 GGTAAAATGACCGAAATA-CCCCATAG
* * *
25766709 GATAAAAAGATCGAAATACCCTCATAG
1 GGTAAAATGACCGAAATACCC-CATAG
* *
25766736 GGTAAAATGACAGAAATACCCCCATAC
1 GGTAAAATGACCGAAATA-CCCCATAG
*
25766763 GGTAAAATGACCGAAATACTTCCATAG
1 GGTAAAATGACCGAAATAC-CCCATAG
* *
25766790 GGTAGAATGATCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATA-CCCCATAG
* * *
25766817 CGTAAAATTACCGAAATACCCCTACAG
1 GGTAAAATGACCGAAATACCCC-ATAG
* *
25766844 GGTAAAATGACTGAAATACCCCTATAA
1 GGTAAAATGACCGAAATACCCC-ATAG
** * *
25766871 TATAGAATGACTGAAATACCCCCATAG
1 GGTAAAATGACCGAAATA-CCCCATAG
* * * *
25766898 CGTAAAATAATCAAAATACCCCGATAG
1 GGTAAAATGACCGAAATACCCC-ATAG
*
25766925 GGTAAAATGATCGAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCC-ATAG
* ** *
25766952 AGTAGCATGACTGAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCC-ATAG
* * * *
25766979 GGTAAAATAACTGGAATACCCCCGTAG
1 GGTAAAATGACCGAAATA-CCCCATAG
* *
25767006 GGTAAAATGACCAAAATACCCTTATAG
1 GGTAAAATGACCGAAATACCC-CATAG
*
25767033 GGTAAAATGACCAAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCC-ATAG
* *
25767060 GGTAAAATGATCGAGATACCCCATAG
1 GGTAAAATGACCGAAATACCCCATAG
* * *
25767086 GGT-GAATGACCGGAATACCCTCATTG
1 GGTAAAATGACCGAAATACCC-CATAG
25767112 GGTAAAATGAC
1 GGTAAAATGAC
25767123 TGTTATACCC
Statistics
Matches: 429, Mismatches: 79, Indels: 26
0.80 0.15 0.05
Matches are distributed among these distances:
25 13 0.03
26 53 0.12
27 351 0.82
28 12 0.03
ACGTcount: A:0.41, C:0.21, G:0.18, T:0.19
Consensus pattern (26 bp):
GGTAAAATGACCGAAATACCCCATAG
Found at i:25767315 original size:26 final size:26
Alignment explanation
Indices: 25767286--25767366 Score: 135
Period size: 26 Copynumber: 3.1 Consensus size: 26
25767276 TGGAGAAAGT
*
25767286 ATACTGTTACTGGCAGCTTTGCTGTG
1 ATACTGTTACTGGCAGCTTTGCTGCG
* *
25767312 ATACTGTTAGTGGTAGCTTTGCTGCG
1 ATACTGTTACTGGCAGCTTTGCTGCG
25767338 ATACTGTTACTGGCAGCTTTGCTGCG
1 ATACTGTTACTGGCAGCTTTGCTGCG
25767364 ATA
1 ATA
25767367 TTGGTGTGTT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.17, C:0.19, G:0.27, T:0.37
Consensus pattern (26 bp):
ATACTGTTACTGGCAGCTTTGCTGCG
Found at i:25769508 original size:201 final size:201
Alignment explanation
Indices: 25769162--25769636 Score: 815
Period size: 201 Copynumber: 2.4 Consensus size: 201
25769152 TAGAAAAGAC
* * * * * *
25769162 GGCGTTCTTCCTAAAGCAGAAAAGTGATGTGTCTTCCACATTTAAATCTTGGAATACTCTTATTG
1 GGCGTTCTTCCTGAAGCAGAAAAGTGATGTGTTTTCCGCATTTAAGTCTTGGAAAACTATTATTG
* *
25769227 AAAAACAAAAAAAGCCATAACAGGAAGGGAACATTGGAGTATATTAATTCTAATCTGTGGAGGCC
66 AAAAAC-AAAAAAGCCATAACACGAAGGGAACATTGGAGTATATTAATTCTAATCTGTGAAGGCC
25769292 ATCTAGAGTGCCTTCGAGAGGTGGACCTAATTATATGCTAACTTTTATTGATGATTTTTCTAGAA
130 ATCTAGAGTGCCTTCGAGAGGTGGACCTAATTATATGCTAACTTTTATTGATGATTTTTCTAGAA
25769357 AAGTTTG
195 AAGTTTG
25769364 GGCGTTCTTCCTGAAGCAGAAAAGTGATGTGTTTTCCGCATTTAAGTCTTGGAAAACTATTATTG
1 GGCGTTCTTCCTGAAGCAGAAAAGTGATGTGTTTTCCGCATTTAAGTCTTGGAAAACTATTATTG
* * *
25769429 AATAACAAAAAAGCCATAACACGAAGGGAACATTGGAGTATATTCATTCTGATCTGTGAAGGCCA
66 AAAAACAAAAAAGCCATAACACGAAGGGAACATTGGAGTATATTAATTCTAATCTGTGAAGGCCA
*
25769494 TCTAGAGTGCCTTCGAGAGGTGGAGCTAATTATATGCTAACTTTTATTGATGATTTTTCTAGAAA
131 TCTAGAGTGCCTTCGAGAGGTGGACCTAATTATATGCTAACTTTTATTGATGATTTTTCTAGAAA
25769559 AGTTTG
196 AGTTTG
* *
25769565 GGCGTTCTTCCTGAAGCAGAAAAGGGATGTGTTTTTCGCATTTAAGTCTTGGAAAACTATTATTG
1 GGCGTTCTTCCTGAAGCAGAAAAGTGATGTGTTTTCCGCATTTAAGTCTTGGAAAACTATTATTG
25769630 AAAAACA
66 AAAAACA
25769637 GATGGCAAAA
Statistics
Matches: 258, Mismatches: 15, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
201 194 0.75
202 64 0.25
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (201 bp):
GGCGTTCTTCCTGAAGCAGAAAAGTGATGTGTTTTCCGCATTTAAGTCTTGGAAAACTATTATTG
AAAAACAAAAAAGCCATAACACGAAGGGAACATTGGAGTATATTAATTCTAATCTGTGAAGGCCA
TCTAGAGTGCCTTCGAGAGGTGGACCTAATTATATGCTAACTTTTATTGATGATTTTTCTAGAAA
AGTTTG
Found at i:25783867 original size:7 final size:7
Alignment explanation
Indices: 25783855--25783880 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
25783845 ATATACTCAA
25783855 ACAGAAT
1 ACAGAAT
25783862 ACAGAAT
1 ACAGAAT
25783869 ACAGAAT
1 ACAGAAT
25783876 ACAGA
1 ACAGA
25783881 TCACTTCCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.15, T:0.12
Consensus pattern (7 bp):
ACAGAAT
Found at i:25786739 original size:14 final size:14
Alignment explanation
Indices: 25786720--25786746 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
25786710 GATACTATAA
25786720 AAAATAAAAGGAGG
1 AAAATAAAAGGAGG
25786734 AAAATAAAAGGAG
1 AAAATAAAAGGAG
25786747 TAAGCGTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.00, G:0.26, T:0.07
Consensus pattern (14 bp):
AAAATAAAAGGAGG
Found at i:25786884 original size:20 final size:20
Alignment explanation
Indices: 25786839--25786884 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
25786829 ATCATGGTCT
25786839 TTGCTT-CTTATTTACTTAC
1 TTGCTTACTTATTTACTTAC
*
25786858 TCT-CTTACTTGTTTACTTAC
1 T-TGCTTACTTATTTACTTAC
25786878 TTGCTTA
1 TTGCTTA
25786885 AATAAATCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.15, C:0.22, G:0.07, T:0.57
Consensus pattern (20 bp):
TTGCTTACTTATTTACTTAC
Found at i:25787214 original size:50 final size:49
Alignment explanation
Indices: 25787093--25787271 Score: 182
Period size: 50 Copynumber: 3.6 Consensus size: 49
25787083 ACATGCGAAA
* * *
25787093 GCCATGTCCCAGACATGGTCTTACATGGGA-TGTTTC-CTGTACTGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACT-TCTCACT-CAGTGCCAAT
* * * *
25787142 GTCATATCCCAGATATGGTCTTACATGGGACTTCTCACATCAGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACTTCTCAC-TCAGTGCCAAT
** * * *
25787192 GCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACTTCTCA-CTCAGTGCCAAT
* *
25787242 GCCATGTCTCAGACATGGTCTTACAAGGGA
1 GCCATGTCCCAGACATGGTCTTACATGGGA
25787272 TCTCATTCCC
Statistics
Matches: 107, Mismatches: 19, Indels: 7
0.80 0.14 0.05
Matches are distributed among these distances:
49 30 0.28
50 75 0.70
51 2 0.02
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27
Consensus pattern (49 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACTTCTCACTCAGTGCCAAT
Found at i:25791534 original size:42 final size:40
Alignment explanation
Indices: 25791472--25791698 Score: 204
Period size: 42 Copynumber: 5.4 Consensus size: 40
25791462 AAATTCCCCG
* * * * *
25791472 AGGGGTTGCTAAGTGCTGATTCCCTGAATTACTGACTCTAG
1 AGGGGTTGCTAAGTGCTGATTCCCCGTATTATTGAAT-TAA
* *
25791513 AGGTGGTTGCTATGTGCTGATTCCACCGTATTTTTGAATTGGAA
1 AGG-GGTTGCTAAGTGCTGATTCC-CCGTATTATTGAATT--AA
* *
25791557 AGGGGTTGTTATGTGCTGATTCCCCGTATTATTGAATATAA
1 AGGGGTTGCTAAGTGCTGATTCCCCGTATTATTGAAT-TAA
*
25791598 AGGTGGTTGCTAAGTGCTGATTCCACCGTATCT-TTGATTGTGAA
1 AGG-GGTTGCTAAGTGCTGATTCC-CCGTAT-TATTGAAT-T-AA
* * * * *
25791642 AGGAGTTGCTATGTGCTGATTCCCCGTATCACTGAATTTA
1 AGGGGTTGCTAAGTGCTGATTCCCCGTATTATTGAATTAA
25791682 AGGTGGTTGCTAAGTGC
1 AGG-GGTTGCTAAGTGC
25791699 AAAATCCATC
Statistics
Matches: 154, Mismatches: 21, Indels: 22
0.78 0.11 0.11
Matches are distributed among these distances:
40 4 0.03
41 20 0.13
42 61 0.40
43 59 0.38
44 10 0.06
ACGTcount: A:0.22, C:0.16, G:0.27, T:0.36
Consensus pattern (40 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGTATTATTGAATTAA
Found at i:25791571 original size:43 final size:42
Alignment explanation
Indices: 25791517--25791670 Score: 197
Period size: 43 Copynumber: 3.6 Consensus size: 42
25791507 CTCTAGAGGT
25791517 GGTTGCTATGTGCTGATTCCACCGTATTTTTGAATTGGAAAGG
1 GGTTGCTATGTGCTGATTCC-CCGTATTTTTGAATTGGAAAGG
* *
25791560 GGTTGTTATGTGCTGATTCCCCGTATTATTGAATAT--AAAGG
1 GGTTGCTATGTGCTGATTCCCCGTATTTTTGAAT-TGGAAAGG
* *
25791601 TGGTTGCTAAGTGCTGATTCCACCGTATCTTTG-ATTGTGAAAGG
1 -GGTTGCTATGTGCTGATTCC-CCGTATTTTTGAATTG-GAAAGG
*
25791645 AGTTGCTATGTGCTGATTCCCCGTAT
1 GGTTGCTATGTGCTGATTCCCCGTAT
25791671 CACTGAATTT
Statistics
Matches: 97, Mismatches: 8, Indels: 13
0.82 0.07 0.11
Matches are distributed among these distances:
41 6 0.06
42 39 0.40
43 47 0.48
44 5 0.05
ACGTcount: A:0.21, C:0.16, G:0.26, T:0.38
Consensus pattern (42 bp):
GGTTGCTATGTGCTGATTCCCCGTATTTTTGAATTGGAAAGG
Found at i:25791615 original size:85 final size:84
Alignment explanation
Indices: 25791472--25791698 Score: 312
Period size: 85 Copynumber: 2.7 Consensus size: 84
25791462 AAATTCCCCG
* * * * * *
25791472 AGGGGTTGCTAAGTGCTGATTCCCTGAATTACTGACTCTAGAGGTGGTTGCTATGTGCTGATTCC
1 AGGGGTTGCTATGTGCTGATTCCCCGTATTACTGAAT-TAAAGGTGGTTGCTAAGTGCTGATTCC
*
25791537 ACCGTATTTTTGAATTG-GAA
65 ACCGTATCTTTG-ATTGTGAA
* *
25791557 AGGGGTTGTTATGTGCTGATTCCCCGTATTATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCC
1 AGGGGTTGCTATGTGCTGATTCCCCGTATTACTGAAT-TAAAGGTGGTTGCTAAGTGCTGATTCC
25791622 ACCGTATCTTTGATTGTGAA
65 ACCGTATCTTTGATTGTGAA
* * *
25791642 AGGAGTTGCTATGTGCTGATTCCCCGTATCACTGAATTTAAGGTGGTTGCTAAGTGC
1 AGGGGTTGCTATGTGCTGATTCCCCGTATTACTGAATTAAAGGTGGTTGCTAAGTGC
25791699 AAAATCCATC
Statistics
Matches: 126, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
84 23 0.18
85 103 0.82
ACGTcount: A:0.22, C:0.16, G:0.27, T:0.36
Consensus pattern (84 bp):
AGGGGTTGCTATGTGCTGATTCCCCGTATTACTGAATTAAAGGTGGTTGCTAAGTGCTGATTCCA
CCGTATCTTTGATTGTGAA
Found at i:25798764 original size:42 final size:40
Alignment explanation
Indices: 25798702--25798931 Score: 210
Period size: 43 Copynumber: 5.5 Consensus size: 40
25798692 AGATTCCCAG
* * * * *
25798702 AGGGGTTGCTAAGTGTTGATTCCCCGAATTACTGACTCTAG
1 AGGGGTTGCTAAGTGCTGATTCCCCGTATTATTGAAT-TAA
* *
25798743 AGGTGGTTGCTATGTGCTGATTCCACCGTATTTTTGAATTGGAA
1 AGG-GGTTGCTAAGTGCTGATTCC-CCGTATTATTGAATT--AA
*
25798787 AGGGGTTGCTATGTGCTGATTCCCCGTATTATTGAATATAA
1 AGGGGTTGCTAAGTGCTGATTCCCCGTATTATTGAAT-TAA
* *
25798828 AGGTGGTTGTTAAGTGCTGATTCCACCGTATCT-TTGACTGTGAA
1 AGG-GGTTGCTAAGTGCTGATTCC-CCGTAT-TATTGAAT-T-AA
* * * *
25798872 AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATTTA
1 AGGGGTTGCTAAGTGCTGATTCCCCGTATTATTGAATTAA
*
25798912 TGGTGGTTGCTAAGTGCTGA
1 AGG-GGTTGCTAAGTGCTGA
25798932 ATCCATCAAG
Statistics
Matches: 158, Mismatches: 20, Indels: 22
0.79 0.10 0.11
Matches are distributed among these distances:
40 3 0.02
41 24 0.15
42 60 0.38
43 61 0.39
44 10 0.06
ACGTcount: A:0.21, C:0.16, G:0.27, T:0.36
Consensus pattern (40 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGTATTATTGAATTAA
Found at i:25798845 original size:85 final size:84
Alignment explanation
Indices: 25798702--25798936 Score: 310
Period size: 85 Copynumber: 2.8 Consensus size: 84
25798692 AGATTCCCAG
* * * * * *
25798702 AGGGGTTGCTAAGTGTTGATTCCCCGAATTACTGACTCTAGAGGTGGTTGCTATGTGCTGATTCC
1 AGGGGTTGCTATGTGCTGATTCCCCGTATTACTGAAT-TAAAGGTGGTTGCTAAGTGCTGATTCC
* *
25798767 ACCGTATTTTTGAAT-TGGAA
65 ACCGTATCTTTGACTGT-GAA
* *
25798787 AGGGGTTGCTATGTGCTGATTCCCCGTATTATTGAATATAAAGGTGGTTGTTAAGTGCTGATTCC
1 AGGGGTTGCTATGTGCTGATTCCCCGTATTACTGAAT-TAAAGGTGGTTGCTAAGTGCTGATTCC
25798852 ACCGTATCTTTGACTGTGAA
65 ACCGTATCTTTGACTGTGAA
* * * *
25798872 AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATTTATGGTGGTTGCTAAGTGCTGAATCCA
1 AGGGGTTGCTATGTGCTGATTCCCCGTATTACTGAATTAAAGGTGGTTGCTAAGTGCTGATTCCA
25798937 TCAAGTAATG
Statistics
Matches: 132, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
84 24 0.18
85 107 0.81
86 1 0.01
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (84 bp):
AGGGGTTGCTATGTGCTGATTCCCCGTATTACTGAATTAAAGGTGGTTGCTAAGTGCTGATTCCA
CCGTATCTTTGACTGTGAA
Found at i:25802810 original size:23 final size:23
Alignment explanation
Indices: 25802784--25802859 Score: 116
Period size: 23 Copynumber: 3.3 Consensus size: 23
25802774 ATAAGTGCCA
25802784 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
25802807 CACTGATATGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* * *
25802830 CACTAAAATGTAGCTGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
25802853 CACTGAT
1 CACTGAT
25802860 CAATAACACT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.24
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:25804339 original size:26 final size:27
Alignment explanation
Indices: 25804284--25804347 Score: 64
Period size: 27 Copynumber: 2.4 Consensus size: 27
25804274 CTTTGCCTCA
*
25804284 ATTTCAAA-TCTTTATGAGTCATTAAGT
1 ATTTCAAACT-TTTATGAGTCATGAAGT
25804311 ATTTCAAACTTTTATG-GTCAGTGAA-T
1 ATTTCAAACTTTTATGAGTCA-TGAAGT
25804337 A-TTCAACACTT
1 ATTTCAA-ACTT
25804348 CTCACCGTAC
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
25 5 0.15
26 10 0.30
27 17 0.52
28 1 0.03
ACGTcount: A:0.33, C:0.14, G:0.11, T:0.42
Consensus pattern (27 bp):
ATTTCAAACTTTTATGAGTCATGAAGT
Found at i:25808692 original size:20 final size:20
Alignment explanation
Indices: 25808647--25808692 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
25808637 ATCATGGTCT
25808647 TTGCTT-CTTCTTTACTTAC
1 TTGCTTACTTCTTTACTTAC
*
25808666 TCT-CTTACTTGTTTACTTAC
1 T-TGCTTACTTCTTTACTTAC
25808686 TTGCTTA
1 TTGCTTA
25808693 AATAACTCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.13, C:0.24, G:0.07, T:0.57
Consensus pattern (20 bp):
TTGCTTACTTCTTTACTTAC
Found at i:25809035 original size:50 final size:50
Alignment explanation
Indices: 25808981--25809078 Score: 124
Period size: 50 Copynumber: 2.0 Consensus size: 50
25808971 ATATGGGAGT
* * * *
25808981 TCTCACATCGGTGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACA
1 TCTCACATCGGAGCCAACGCCATGTCCCAGACAAGGTCTTACAGGGGACA
** * *
25809031 TCTCATTTCGGAGCCAACGCCATGTCCCAGACAAGGTTTTACATGGGA
1 TCTCACATCGGAGCCAACGCCATGTCCCAGACAAGGTCTTACAGGGGA
25809079 TCTCATTCCC
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 40 1.00
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.23
Consensus pattern (50 bp):
TCTCACATCGGAGCCAACGCCATGTCCCAGACAAGGTCTTACAGGGGACA
Found at i:25813225 original size:16 final size:16
Alignment explanation
Indices: 25813204--25813239 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
25813194 AACAAAATAT
*
25813204 GAACTAGCTAAATGCA
1 GAACTAGCTAAATACA
*
25813220 GAACTAGCTGAATACA
1 GAACTAGCTAAATACA
25813236 GAAC
1 GAAC
25813240 AAAAACAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.44, C:0.19, G:0.19, T:0.17
Consensus pattern (16 bp):
GAACTAGCTAAATACA
Found at i:25814772 original size:62 final size:62
Alignment explanation
Indices: 25814670--25814834 Score: 177
Period size: 62 Copynumber: 2.7 Consensus size: 62
25814660 TTTGTGGGTC
* ** * * * * * * *
25814670 AAGACCACACGGCTTGGGACACAAGCTTGTGCTCAGGCCGTGTACCTTACTGTTTATGGTAT
1 AAGACCACACGGCTAGGGACACGGGCATGTACCCAAGCCGTGTAACTCACTGTTTATGATAT
* *
25814732 AAGACCACACAGCTAGGGACACGGGCATGTACCCAAGCCGTGTAACTCACTGTTTGTGATAT
1 AAGACCACACGGCTAGGGACACGGGCATGTACCCAAGCCGTGTAACTCACTGTTTATGATAT
* * * * *
25814794 AAAACAACACGGTTAGGGACATGGGCGTGTACCCAAGCCGT
1 AAGACCACACGGCTAGGGACACGGGCATGTACCCAAGCCGT
25814835 ATGAGTCATG
Statistics
Matches: 85, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
62 85 1.00
ACGTcount: A:0.27, C:0.25, G:0.26, T:0.22
Consensus pattern (62 bp):
AAGACCACACGGCTAGGGACACGGGCATGTACCCAAGCCGTGTAACTCACTGTTTATGATAT
Found at i:25828348 original size:21 final size:22
Alignment explanation
Indices: 25828322--25828366 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
25828312 TTAAGCATTG
* *
25828322 TATAAATAAAAAT-AATATATT
1 TATAAAGAAAAATGAATAGATT
*
25828343 TATAAAGAAATATGAATAGATT
1 TATAAAGAAAAATGAATAGATT
25828365 TA
1 TA
25828367 ATTATTTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.36
Consensus pattern (22 bp):
TATAAAGAAAAATGAATAGATT
Found at i:25829012 original size:79 final size:80
Alignment explanation
Indices: 25828907--25829065 Score: 311
Period size: 79 Copynumber: 2.0 Consensus size: 80
25828897 ATCAAAAAAT
25828907 AAAATATTAATTAAATTTAGTTCAGCTCAGATAATTATATTTTTAATTTATCAACTTAAATGAAT
1 AAAATATTAATTAAATTTAGTTCAGCTCAGATAATTATATTTTTAATTTATCAACTTAAATGAAT
25828972 AAATTGATTATTACA
66 AAATTGATTATTACA
25828987 AAAATATTAA-TAAATTTAGTTCAGCTCAGATAATTATATTTTTAATTTATCAACTTAAATGAAT
1 AAAATATTAATTAAATTTAGTTCAGCTCAGATAATTATATTTTTAATTTATCAACTTAAATGAAT
25829051 AAATTGATTATTACA
66 AAATTGATTATTACA
25829066 TGAATCAAAA
Statistics
Matches: 79, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
79 69 0.87
80 10 0.13
ACGTcount: A:0.44, C:0.08, G:0.06, T:0.42
Consensus pattern (80 bp):
AAAATATTAATTAAATTTAGTTCAGCTCAGATAATTATATTTTTAATTTATCAACTTAAATGAAT
AAATTGATTATTACA
Found at i:25831189 original size:43 final size:42
Alignment explanation
Indices: 25831136--25831257 Score: 111
Period size: 43 Copynumber: 2.8 Consensus size: 42
25831126 CAGTACAGTA
* * *
25831136 TGGATGAACCACTAAACGTTGCAAATGAA-CTACTAGTACGATG
1 TGGATAAACCACTAAACG-TGCAAA-CAAGCTACTAATACGATG
** * *
25831179 TGGATAAACCACTATTCAGTGCAAACAAGCTACTAATATGGTG
1 TGGATAAACCACTAAAC-GTGCAAACAAGCTACTAATACGATG
* * *
25831222 TGGATTAACCACTAAACGGTGCAGACAAGCTGCTAA
1 TGGATAAACCACTAAAC-GTGCAAACAAGCTACTAA
25831258 CACTTCCTTC
Statistics
Matches: 64, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
42 2 0.03
43 61 0.95
44 1 0.02
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (42 bp):
TGGATAAACCACTAAACGTGCAAACAAGCTACTAATACGATG
Found at i:25832337 original size:17 final size:16
Alignment explanation
Indices: 25832294--25832337 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
25832284 CAATTATAAG
* *
25832294 AGAAAAGATGAGGAAA
1 AGAAAAGAGGAAGAAA
25832310 AGAAAAGAGGAAGAAA
1 AGAAAAGAGGAAGAAA
*
25832326 ATAAATAGAGGA
1 AGAAA-AGAGGA
25832338 TGAAGAGGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 18 0.75
17 6 0.25
ACGTcount: A:0.64, C:0.00, G:0.30, T:0.07
Consensus pattern (16 bp):
AGAAAAGAGGAAGAAA
Found at i:25835003 original size:21 final size:20
Alignment explanation
Indices: 25834979--25835034 Score: 58
Period size: 21 Copynumber: 2.8 Consensus size: 20
25834969 ATTAGTTTAT
25834979 TAAATTAAATAAAAAAGTTA
1 TAAATTAAATAAAAAAGTTA
* * **
25834999 CTAAATTTATTATTAAAGTTA
1 -TAAATTAAATAAAAAAGTTA
*
25835020 TAAATTATATAAAAA
1 TAAATTAAATAAAAA
25835035 TAAATTAATA
Statistics
Matches: 26, Mismatches: 9, Indels: 1
0.72 0.25 0.03
Matches are distributed among these distances:
20 10 0.38
21 16 0.62
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.38
Consensus pattern (20 bp):
TAAATTAAATAAAAAAGTTA
Found at i:25836096 original size:31 final size:30
Alignment explanation
Indices: 25836051--25836129 Score: 106
Period size: 31 Copynumber: 2.5 Consensus size: 30
25836041 TTTAAGAGTT
25836051 AATAGGAGTATTTTAGATAGTATG-AAAAATC
1 AATAGG-GTATTTTAGATAGTA-GCAAAAATC
25836082 AATAAGGGTATTTTAGATAGTAGCAAAAATC
1 AAT-AGGGTATTTTAGATAGTAGCAAAAATC
*
25836113 AATAGGGATAATTTAGA
1 AATAGGG-TATTTTAGA
25836130 CATTATAACT
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
30 5 0.11
31 36 0.82
32 3 0.07
ACGTcount: A:0.46, C:0.04, G:0.20, T:0.30
Consensus pattern (30 bp):
AATAGGGTATTTTAGATAGTAGCAAAAATC
Found at i:25838262 original size:21 final size:21
Alignment explanation
Indices: 25838224--25838266 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
25838214 CAAGTTACAG
*
25838224 TTTTCAAAACTCTATTTAACT
1 TTTTCAAAAATCTATTTAACT
* *
25838245 TTTTCAAAAATTTGTTTAACT
1 TTTTCAAAAATCTATTTAACT
25838266 T
1 T
25838267 AAAAATTCCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.14, G:0.02, T:0.51
Consensus pattern (21 bp):
TTTTCAAAAATCTATTTAACT
Found at i:25840636 original size:260 final size:261
Alignment explanation
Indices: 25840153--25840678 Score: 919
Period size: 260 Copynumber: 2.0 Consensus size: 261
25840143 TTGGATGCAA
25840153 TAAGTATTCGAATAGGCTCAATTTTTGGGTAAAAATGGTTAAATTGCATGTTTTAGGCTCAGGGA
1 TAAGTATTCGAATAGGCTCAATTTTTGGGTAAAAATGGTTAAATTGCATGTTTTAGGCTCAGGGA
*
25840218 CTAAATTGAACAAAAGTAAAACTTTAGGGGTAATTTTGTAAAAATGTAAAAAATGACTAAATTGC
66 CTAAATTGAACAAAAGTAAAACTTTAGGGGTAATTTTGTAAAAATGTAAAAAATGAATAAATTGC
*
25840283 ATAAAATACATTTTTTAATGTCTAAATTAATAGATTGAATGAAATTATTAATTTAGATCAAGATT
131 ATAAAATACATTTTTTAATGTCTAAATTAATAGATTGAATGAAATTATTAATTTAGATCAAGATC
* * *
25840348 GGATGGAAAATCGAGGAGAATGGTAAAAATGCTCTTGTACTTTGACATTTCTACAATTTAGCCAG
196 GGATGGAAAATCGAGGAGAATGGTAAAAATGCCCTTGGACTTTGAAATTTCTACAATTTAGCCAG
25840413 G
261 G
** *
25840414 TAAGTATTCGGCTAGGCTCAA-TTTTGGGTAAAAATGGTTAAATTGCATGTTTTAGGCTTAGGGA
1 TAAGTATTCGAATAGGCTCAATTTTTGGGTAAAAATGGTTAAATTGCATGTTTTAGGCTCAGGGA
* *
25840478 CTAAATTGAACAAAAGTAAAACTTTAGGGGTAATTTTTTAAAAATGTAAATAATGAATAAATTGC
66 CTAAATTGAACAAAAGTAAAACTTTAGGGGTAATTTTGTAAAAATGTAAAAAATGAATAAATTGC
*
25840543 ATAAAATACATTTTTTACTGTCTAAATTAATAGATTGAATGAAATTATTAATTTAGATCAAGATC
131 ATAAAATACATTTTTTAATGTCTAAATTAATAGATTGAATGAAATTATTAATTTAGATCAAGATC
* * *
25840608 GGATGGAAAATCGGGGAGAATGGTAAAAATGCCCTTGGACTTTGAAATTTTTGCAATTTAGCCAG
196 GGATGGAAAATCGAGGAGAATGGTAAAAATGCCCTTGGACTTTGAAATTTCTACAATTTAGCCAG
25840673 G
261 G
25840674 TAAGT
1 TAAGT
25840679 TCGTATGAAC
Statistics
Matches: 251, Mismatches: 14, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
260 232 0.92
261 19 0.08
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.34
Consensus pattern (261 bp):
TAAGTATTCGAATAGGCTCAATTTTTGGGTAAAAATGGTTAAATTGCATGTTTTAGGCTCAGGGA
CTAAATTGAACAAAAGTAAAACTTTAGGGGTAATTTTGTAAAAATGTAAAAAATGAATAAATTGC
ATAAAATACATTTTTTAATGTCTAAATTAATAGATTGAATGAAATTATTAATTTAGATCAAGATC
GGATGGAAAATCGAGGAGAATGGTAAAAATGCCCTTGGACTTTGAAATTTCTACAATTTAGCCAG
G
Found at i:25854031 original size:66 final size:66
Alignment explanation
Indices: 25853956--25854087 Score: 264
Period size: 66 Copynumber: 2.0 Consensus size: 66
25853946 GAGAGAGTAA
25853956 GCATCGGACGAGTATGTGACCAAATTTGTGTAAGTAACTTCTATGTATAACATTCTTTGTGATGC
1 GCATCGGACGAGTATGTGACCAAATTTGTGTAAGTAACTTCTATGTATAACATTCTTTGTGATGC
25854021 C
66 C
25854022 GCATCGGACGAGTATGTGACCAAATTTGTGTAAGTAACTTCTATGTATAACATTCTTTGTGATGC
1 GCATCGGACGAGTATGTGACCAAATTTGTGTAAGTAACTTCTATGTATAACATTCTTTGTGATGC
25854087 C
66 C
25854088 TTTGGTGGGG
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (66 bp):
GCATCGGACGAGTATGTGACCAAATTTGTGTAAGTAACTTCTATGTATAACATTCTTTGTGATGC
C
Found at i:25854441 original size:24 final size:24
Alignment explanation
Indices: 25854322--25854440 Score: 166
Period size: 24 Copynumber: 5.0 Consensus size: 24
25854312 CACGTGATTA
*
25854322 TGTAAGTGCCATTATGGCGTATTT
1 TGTAAGTGCCTTTATGGCGTATTT
*
25854346 TGTAAGTGCCTTTATGGTGTATTT
1 TGTAAGTGCCTTTATGGCGTATTT
*
25854370 TGTAAGTGCATTTATGGCGTATTT
1 TGTAAGTGCCTTTATGGCGTATTT
* * *
25854394 TGTATGTGCCTTTGTGGCGTATTC
1 TGTAAGTGCCTTTATGGCGTATTT
* *
25854418 TGCAAGTGCCTTTGTGGCGTATT
1 TGTAAGTGCCTTTATGGCGTATT
25854441 CGGGAATGCC
Statistics
Matches: 85, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 85 1.00
ACGTcount: A:0.16, C:0.13, G:0.27, T:0.45
Consensus pattern (24 bp):
TGTAAGTGCCTTTATGGCGTATTT
Found at i:25862332 original size:90 final size:90
Alignment explanation
Indices: 25862175--25862391 Score: 258
Period size: 90 Copynumber: 2.4 Consensus size: 90
25862165 ATGAGCTCCT
* * * * *
25862175 TGCTCTTAAT-AAGTTCATAACCCAGAGTTAGGGTGGTCATGTTAAGACGAACTTAATGAATTCA
1 TGCTCTTAATGAA-TTCATAACCCAGGGTTTGGGTGGTCATATTAAGACGAACTTAATAAACTCA
* *
25862239 CTAAATTTATAGGATGAACTACTAGA
65 CTAAATTTATAGGATGAACCACTAAA
* * *
25862265 TGCTCTTAATGATTTCATAACCCAGGGTTTGGGTGGTCATATTAAGACGGACTTGATAAAC-CTA
1 TGCTCTTAATGAATTCATAACCCAGGGTTTGGGTGGTCATATTAAGACGAACTTAATAAACTC-A
*
25862329 CTAAATTTATAGGATGAGCCACTAAA
65 CTAAATTTATAGGATGAACCACTAAA
** * * *
25862355 TATTCTTAATGAATTCATATCCCATGCTTTGGGTGGT
1 TGCTCTTAATGAATTCATAACCCAGGGTTTGGGTGGT
25862392 GGTTCTATTG
Statistics
Matches: 108, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
89 1 0.01
90 106 0.98
91 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (90 bp):
TGCTCTTAATGAATTCATAACCCAGGGTTTGGGTGGTCATATTAAGACGAACTTAATAAACTCAC
TAAATTTATAGGATGAACCACTAAA
Found at i:25863990 original size:20 final size:20
Alignment explanation
Indices: 25863965--25864003 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
25863955 NNNNNNNNNN
25863965 TTTAATATTAAAATAATAAC
1 TTTAATATTAAAATAATAAC
*
25863985 TTTAATATTAAATTAATAA
1 TTTAATATTAAAATAATAA
25864004 AATACTATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (20 bp):
TTTAATATTAAAATAATAAC
Found at i:25864048 original size:37 final size:36
Alignment explanation
Indices: 25863970--25864061 Score: 98
Period size: 37 Copynumber: 2.4 Consensus size: 36
25863960 NNNNNTTTAA
25863970 TATTAAAATAATAACTTTAATATTAAATTAATAAAATAC
1 TATTAAAATAAT-A--TTAATATTAAATTAATAAAATAC
* *
25864009 TATTAAGATAAGTATTAA-ATTAAATTTAATATTAA-AC
1 TATTAAAATAA-TATTAATATTAAA-TTAATA-AAATAC
25864046 TATTAAAATAATATTA
1 TATTAAAATAATATTA
25864062 TTTTTGGTGT
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
36 11 0.23
37 22 0.47
38 2 0.04
39 11 0.23
40 1 0.02
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.40
Consensus pattern (36 bp):
TATTAAAATAATATTAATATTAAATTAATAAAATAC
Found at i:25868141 original size:31 final size:28
Alignment explanation
Indices: 25868089--25868151 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 28
25868079 TACCATTTGA
25868089 TTAGAACTAAATTTTCAAAAATTGAAAAGT
1 TTAGAACTAAATTTTCAAAAATT-AAAA-T
*
25868119 TTAGAGACTAAA-TTTGATAAAATTAAAAT
1 TTAGA-ACTAAATTTTCA-AAAATTAAAAT
25868148 TTAG
1 TTAG
25868152 CCTTTACGCT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
29 5 0.17
30 13 0.43
31 12 0.40
ACGTcount: A:0.49, C:0.05, G:0.11, T:0.35
Consensus pattern (28 bp):
TTAGAACTAAATTTTCAAAAATTAAAAT
Found at i:25868242 original size:26 final size:24
Alignment explanation
Indices: 25868197--25868248 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
25868187 TATTTATTTT
*
25868197 ATTTTAAATATTAATAATTATAAAA
1 ATTTTAAATATAAATAATTA-AAAA
25868222 ATTTTAAAATATCAAAT-ATTAAAAA
1 ATTTT-AAATAT-AAATAATTAAAAA
25868247 AT
1 AT
25868249 AAAGAAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 11 0.46
26 10 0.42
27 3 0.12
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (24 bp):
ATTTTAAATATAAATAATTAAAAA
Found at i:25870370 original size:3 final size:3
Alignment explanation
Indices: 25870357--25870403 Score: 85
Period size: 3 Copynumber: 15.7 Consensus size: 3
25870347 TCCTTCTTTC
*
25870357 TTA TCA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
25870404 CCAAATTGTA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:25871982 original size:13 final size:13
Alignment explanation
Indices: 25871964--25871992 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
25871954 TATGTAGTAT
25871964 AATTTAAAATAAA
1 AATTTAAAATAAA
25871977 AATTTAAAATAAA
1 AATTTAAAATAAA
25871990 AAT
1 AAT
25871993 GAATATTGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
AATTTAAAATAAA
Found at i:25875699 original size:50 final size:50
Alignment explanation
Indices: 25875596--25875836 Score: 216
Period size: 50 Copynumber: 4.7 Consensus size: 50
25875586 GGTAAAGAGA
* *
25875596 TCCCATGTAAGACCATGTCTGGGACATGGAATTGGCATCATTGAGGTTATGAGATG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--TGA-G--ATGAGAAG
* * * *
25875652 TCCCATGTAAAACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAAG
** * * *
25875702 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACTGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAAG
* * * * * * *
25875752 TCCCGTGTAAGACCATATCTAGGATATGGCATTGGCAGT-AGAAGA-AACA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAA-G
* * *
25875801 TCCCAAGTAAGACCATGTCTAGGACATGGCTTTGGC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGC
25875837 TTGTTATTAT
Statistics
Matches: 155, Mismatches: 29, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
48 2 0.01
49 35 0.23
50 80 0.52
52 1 0.01
53 2 0.01
55 1 0.01
56 34 0.22
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAAG
Found at i:25879591 original size:27 final size:27
Alignment explanation
Indices: 25879561--25879617 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
25879551 TTATGAAAGA
25879561 ATGAATTTTATGAGTTGTTATGGGTGT
1 ATGAATTTTATGAGTTGTTATGGGTGT
25879588 ATGAATTTTATGAGTTGTTATGGGTGT
1 ATGAATTTTATGAGTTGTTATGGGTGT
25879615 ATG
1 ATG
25879618 TTGAATTCGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.47
Consensus pattern (27 bp):
ATGAATTTTATGAGTTGTTATGGGTGT
Found at i:25880041 original size:40 final size:40
Alignment explanation
Indices: 25879985--25880062 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
25879975 GTTAACTATA
* * * *
25879985 CCTGAATGCACGTACGTGCCCTTATTTGTACTTTGGTACC
1 CCTGAATGCACATACGTGCCCCTATTTATACTTCGGTACC
*
25880025 CCTGATTGCACATACGTGCCCCTATTTATACTTCGGTA
1 CCTGAATGCACATACGTGCCCCTATTTATACTTCGGTA
25880063 ATTTCAATCA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (40 bp):
CCTGAATGCACATACGTGCCCCTATTTATACTTCGGTACC
Found at i:25882142 original size:31 final size:31
Alignment explanation
Indices: 25882105--25882165 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
25882095 TTGATCATTA
*
25882105 AACTATTCGAAAGTTTTCATTTAAGTCACTG
1 AACTATTCAAAAGTTTTCATTTAAGTCACTG
*
25882136 AACTATTCAAAAGTTTTTATTTAAGTCACT
1 AACTATTCAAAAGTTTTCATTTAAGTCACT
25882166 AGATTAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.34, C:0.15, G:0.10, T:0.41
Consensus pattern (31 bp):
AACTATTCAAAAGTTTTCATTTAAGTCACTG
Found at i:25895007 original size:15 final size:15
Alignment explanation
Indices: 25894987--25895038 Score: 77
Period size: 15 Copynumber: 3.4 Consensus size: 15
25894977 TAAATAATTA
25894987 ATTTAACATTAAAAT
1 ATTTAACATTAAAAT
25895002 ATTTAACATTAAAAT
1 ATTTAACATTAAAAT
* *
25895017 ATTTAATATAAAAAAT
1 ATTTAACAT-TAAAAT
25895033 ATTTAA
1 ATTTAA
25895039 TAACATANNN
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
15 23 0.68
16 11 0.32
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (15 bp):
ATTTAACATTAAAAT
Found at i:25895482 original size:21 final size:22
Alignment explanation
Indices: 25895458--25895505 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 22
25895448 ACTTCATTCT
25895458 ATTTTGGTC-ACTTAGTTATT-A
1 ATTTT-GTCGACTTAGTTATTGA
* *
25895479 ATTTTTTCGATTTAGTTATTGA
1 ATTTTGTCGACTTAGTTATTGA
25895501 ATTTT
1 ATTTT
25895506 TCAAAATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 2 0.09
21 15 0.65
22 6 0.26
ACGTcount: A:0.23, C:0.06, G:0.12, T:0.58
Consensus pattern (22 bp):
ATTTTGTCGACTTAGTTATTGA
Found at i:25898742 original size:27 final size:27
Alignment explanation
Indices: 25898710--25898910 Score: 258
Period size: 27 Copynumber: 7.4 Consensus size: 27
25898700 AACTAAGAGC
25898710 TGCCTTTGTGGCGTACTCTGAAAGAAT
1 TGCCTTTGTGGCGTACTCTGAAAGAAT
* * * *
25898737 TGCCTTTGTGGTGTACTCTAAAAGTAC
1 TGCCTTTGTGGCGTACTCTGAAAGAAT
* * *
25898764 TACCTTTGTGGTGTACTCTGAAAGAAC
1 TGCCTTTGTGGCGTACTCTGAAAGAAT
* * *
25898791 TACCTTTGTGGCATACTCTAAAAGAAT
1 TGCCTTTGTGGCGTACTCTGAAAGAAT
* * * *
25898818 TGCATTGGTGGCATACTCTGAAAGAAC
1 TGCCTTTGTGGCGTACTCTGAAAGAAT
*
25898845 TGCCTTTGTGGTGTACTCTGAAAGAAT
1 TGCCTTTGTGGCGTACTCTGAAAGAAT
*
25898872 TGCCTTTGTGGTGTACTCTGAAAGAAT
1 TGCCTTTGTGGCGTACTCTGAAAGAAT
25898899 TGCCTTTGTGGC
1 TGCCTTTGTGGC
25898911 AAAATCTTAA
Statistics
Matches: 152, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 152 1.00
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (27 bp):
TGCCTTTGTGGCGTACTCTGAAAGAAT
Found at i:25898851 original size:81 final size:81
Alignment explanation
Indices: 25898712--25898938 Score: 305
Period size: 81 Copynumber: 2.8 Consensus size: 81
25898702 CTAAGAGCTG
** * *
25898712 CCTTTGTGGCGTACTCTGAAAGAATTGCCTTTGTGGTGTACTCTAAAAGTACTACCTTTGTGGTG
1 CCTTTGTGGCGTACTCTGAAAGAATTGCCTTTGTGGCATACTCTAAAAGAACTGCCTTTGTGGTG
25898777 TACTCTGAAAGAACTA
66 TACTCTGAAAGAACTA
* * * * *
25898793 CCTTTGTGGCATACTCTAAAAGAATTGCATTGGTGGCATACTCTGAAAGAACTGCCTTTGTGGTG
1 CCTTTGTGGCGTACTCTGAAAGAATTGCCTTTGTGGCATACTCTAAAAGAACTGCCTTTGTGGTG
* *
25898858 TACTCTGAAAGAATTG
66 TACTCTGAAAGAACTA
* * *
25898874 CCTTTGTGGTGTACTCTGAAAGAATTGCCTTTGTGGCAAAATCTTAAAAGAA-TG-CTTTGTGGT
1 CCTTTGTGGCGTACTCTGAAAGAATTGCCTTTGTGGCATACTC-TAAAAGAACTGCCTTTGTGGT
25898937 GT
65 GT
25898939 GATCTAAAAG
Statistics
Matches: 126, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
80 11 0.09
81 108 0.86
82 7 0.06
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (81 bp):
CCTTTGTGGCGTACTCTGAAAGAATTGCCTTTGTGGCATACTCTAAAAGAACTGCCTTTGTGGTG
TACTCTGAAAGAACTA
Found at i:25915961 original size:34 final size:33
Alignment explanation
Indices: 25915898--25915969 Score: 90
Period size: 34 Copynumber: 2.2 Consensus size: 33
25915888 TTTGTTCTAA
* *
25915898 CAATTGTTTTTTTAAAATTTTGGGGTTTTTAAT
1 CAATTATTTTTTTAAAATTTTAGGGTTTTTAAT
* *
25915931 CAATTATTTTTTATAAAATTTTATGTTTTTTAAT
1 CAATTATTTTTT-TAAAATTTTAGGGTTTTTAAT
*
25915965 TAATT
1 CAATT
25915970 TCCAATAATT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
33 11 0.33
34 22 0.67
ACGTcount: A:0.29, C:0.03, G:0.08, T:0.60
Consensus pattern (33 bp):
CAATTATTTTTTTAAAATTTTAGGGTTTTTAAT
Found at i:25923084 original size:18 final size:18
Alignment explanation
Indices: 25923058--25923103 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
25923048 CACACGGGCA
* * *
25923058 TGTGGGCCCACATGGGTG
1 TGTGAGCCCACATAGGCG
*
25923076 TTTGAGCCCACATAGGCG
1 TGTGAGCCCACATAGGCG
25923094 TGTGAGCCCA
1 TGTGAGCCCA
25923104 TTTTCACTGA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.17, C:0.26, G:0.35, T:0.22
Consensus pattern (18 bp):
TGTGAGCCCACATAGGCG
Found at i:25925235 original size:96 final size:96
Alignment explanation
Indices: 25925061--25925236 Score: 239
Period size: 96 Copynumber: 1.8 Consensus size: 96
25925051 TTTCTTGTTC
*** * *
25925061 GATATTTAATTGGACATTGGAAACCCTTATGATCTTTTGAACTACACAAATAACTTTGCACTAAA
1 GATATTTAATTGGACATCAAAAACCCTCATGATCTTTGGAACTACACAAATAACTTTGCACTAAA
* * *
25925126 GGTGATAGCTCAATCTTATTCTCTCTATTTG
66 GCTGAGAGATCAATCTTATTCTCTCTATTTG
*
25925157 GATATTTAATTGGACATCAAAAACCCTCATGATCTTTGGAACTACACCAATAACATTT-CAC-AA
1 GATATTTAATTGGACATCAAAAACCCTCATGATCTTTGGAACTACACAAATAAC-TTTGCACTAA
25925220 TAGCTGAGAGATCAATC
65 -AGCTGAGAGATCAATC
25925237 ATACTCCTAT
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
95 2 0.03
96 64 0.93
97 3 0.04
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33
Consensus pattern (96 bp):
GATATTTAATTGGACATCAAAAACCCTCATGATCTTTGGAACTACACAAATAACTTTGCACTAAA
GCTGAGAGATCAATCTTATTCTCTCTATTTG
Found at i:25930149 original size:29 final size:30
Alignment explanation
Indices: 25930116--25930307 Score: 157
Period size: 30 Copynumber: 6.4 Consensus size: 30
25930106 AGTTATCGAT
*
25930116 TATGAAAAGGGATGTTGACGACCATC-AACA
1 TATGAAAAGGGATGGTGACGACCATCGAA-A
25930146 -ATGAAAAGGGATGGTGACGACCATCGAAA
1 TATGAAAAGGGATGGTGACGACCATCGAAA
* * ** **
25930175 TATGAAAAGGGATGGAT-TCGGCTGTCGATT
1 TATGAAAAGGGATGG-TGACGACCATCGAAA
* * *
25930205 TATGAAAAGGGATAGCT-TC-AGCTATC-AAA
1 TATGAAAAGGGAT-GGTGACGA-CCATCGAAA
*
25930234 TTATGAAAAGGGATGGTGACGACCATCGAGCA
1 -TATGAAAAGGGATGGTGACGACCATCGA-AA
*
25930266 -ATGAAAAGGGATGGTGACTACCATC-AAA
1 TATGAAAAGGGATGGTGACGACCATCGAAA
25930294 TTATGAAAAGGGAT
1 -TATGAAAAGGGAT
25930308 AGCTTCGGCT
Statistics
Matches: 132, Mismatches: 18, Indels: 24
0.76 0.10 0.14
Matches are distributed among these distances:
28 1 0.01
29 29 0.22
30 97 0.73
31 4 0.03
32 1 0.01
ACGTcount: A:0.38, C:0.13, G:0.28, T:0.21
Consensus pattern (30 bp):
TATGAAAAGGGATGGTGACGACCATCGAAA
Found at i:25930239 original size:60 final size:59
Alignment explanation
Indices: 25930175--25930369 Score: 169
Period size: 60 Copynumber: 3.3 Consensus size: 59
25930165 ACCATCGAAA
**
25930175 TATGAAAAGGGATGGATTCGGCTGTCGATTTATGAAAAGGGATAGCTTCAGCTATCAAAT
1 TATGAAAAGGGATGG-TTCGGCTGTCGAACTATGAAAAGGGATAGCTTCAGCTATCAAAT
* * ** * * * * *
25930235 TATGAAAAGGGATGGTGACGACCATCGAGCAATGAAAAGGGAT-GGTGACTA-CCATCAAAT
1 TATGAAAAGGGATGGT-TCGGCTGTCGAACTATGAAAAGGGATAGCT-TC-AGCTATCAAAT
* * * * * **
25930295 TATGAAAAGGGATAGCTTCGGCTGTCAAACTATAAAAAGGGATAACTTCAGTTATTGAAT
1 TATGAAAAGGGAT-GGTTCGGCTGTCGAACTATGAAAAGGGATAGCTTCAGCTATCAAAT
25930355 TATGAAAAGGGATGG
1 TATGAAAAGGGATGG
25930370 GTCAACCATC
Statistics
Matches: 102, Mismatches: 27, Indels: 13
0.72 0.19 0.09
Matches are distributed among these distances:
59 5 0.05
60 93 0.91
61 4 0.04
ACGTcount: A:0.37, C:0.12, G:0.27, T:0.25
Consensus pattern (59 bp):
TATGAAAAGGGATGGTTCGGCTGTCGAACTATGAAAAGGGATAGCTTCAGCTATCAAAT
Found at i:25930254 original size:90 final size:90
Alignment explanation
Indices: 25930146--25930337 Score: 244
Period size: 90 Copynumber: 2.1 Consensus size: 90
25930136 ACCATCAACA
* * ** * *
25930146 ATGAAAAGGGATGGTGACGACCATCGA-AATATGAAAAGGGATGGAT-TCGGCTGTCGATTTATG
1 ATGAAAAGGGATGGTGACGACCATCGAGAA-ATGAAAAGGGATGG-TGACGACCATCAAATTATG
*
25930209 AAAAGGGATAGCTTCAGCTATCAAATT
64 AAAAGGGATAGCTTCAGCTATCAAACT
* *
25930236 ATGAAAAGGGATGGTGACGACCATCGAGCAATGAAAAGGGATGGTGACTACCATCAAATTATGAA
1 ATGAAAAGGGATGGTGACGACCATCGAGAAATGAAAAGGGATGGTGACGACCATCAAATTATGAA
* *
25930301 AAGGGATAGCTTCGGCTGTCAAACT
66 AAGGGATAGCTTCAGCTATCAAACT
*
25930326 ATAAAAAGGGAT
1 ATGAAAAGGGAT
25930338 AACTTCAGTT
Statistics
Matches: 88, Mismatches: 12, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
89 1 0.01
90 86 0.98
91 1 0.01
ACGTcount: A:0.38, C:0.13, G:0.28, T:0.22
Consensus pattern (90 bp):
ATGAAAAGGGATGGTGACGACCATCGAGAAATGAAAAGGGATGGTGACGACCATCAAATTATGAA
AAGGGATAGCTTCAGCTATCAAACT
Found at i:25930323 original size:30 final size:30
Alignment explanation
Indices: 25930288--25930367 Score: 88
Period size: 30 Copynumber: 2.7 Consensus size: 30
25930278 GGTGACTACC
* *
25930288 ATCAAATTATGAAAAGGGATAGCTTCGGCT
1 ATCAAATTATGAAAAGGGATAACTTCAGCT
* * * *
25930318 GTCAAACTATAAAAAGGGATAACTTCAGTT
1 ATCAAATTATGAAAAGGGATAACTTCAGCT
**
25930348 ATTGAATTATGAAAAGGGAT
1 ATCAAATTATGAAAAGGGAT
25930368 GGGTCAACCA
Statistics
Matches: 39, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.28
Consensus pattern (30 bp):
ATCAAATTATGAAAAGGGATAACTTCAGCT
Found at i:25934468 original size:23 final size:24
Alignment explanation
Indices: 25934437--25934483 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
25934427 AAAAACAATC
25934437 TACAAAATCAAATC-TCTAAGATT
1 TACAAAATCAAATCTTCTAAGATT
* *
25934460 TACAGAATCATATCTTCTAAGATT
1 TACAAAATCAAATCTTCTAAGATT
25934484 ACATATCATC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.43, C:0.17, G:0.06, T:0.34
Consensus pattern (24 bp):
TACAAAATCAAATCTTCTAAGATT
Found at i:25934490 original size:17 final size:17
Alignment explanation
Indices: 25934468--25934521 Score: 81
Period size: 17 Copynumber: 3.2 Consensus size: 17
25934458 TTTACAGAAT
*
25934468 CATATCTTCTAAGATTA
1 CATATCTTCCAAGATTA
*
25934485 CATATCATCCAAGATTA
1 CATATCTTCCAAGATTA
*
25934502 CATATCTTCGAAGATTA
1 CATATCTTCCAAGATTA
25934519 CAT
1 CAT
25934522 TCCATATTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 33 1.00
ACGTcount: A:0.37, C:0.20, G:0.07, T:0.35
Consensus pattern (17 bp):
CATATCTTCCAAGATTA
Found at i:25936751 original size:33 final size:34
Alignment explanation
Indices: 25936711--25936778 Score: 129
Period size: 33 Copynumber: 2.0 Consensus size: 34
25936701 AGTTAACTTA
25936711 AAAATAATATATAAACTTTAT-AAAAAATGTTTT
1 AAAATAATATATAAACTTTATAAAAAAATGTTTT
25936744 AAAATAATATATAAACTTTATAAAAAAATGTTTT
1 AAAATAATATATAAACTTTATAAAAAAATGTTTT
25936778 A
1 A
25936779 TAAAGTGTCC
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 21 0.62
34 13 0.38
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (34 bp):
AAAATAATATATAAACTTTATAAAAAAATGTTTT
Found at i:25942612 original size:319 final size:322
Alignment explanation
Indices: 25942031--25942675 Score: 1143
Period size: 319 Copynumber: 2.0 Consensus size: 322
25942021 AGAAGTTAGC
25942031 ATTATCATTGTACATTCTTGGAAATAGAGAATCAAATTCAAATGCAACAGAGCGATTTCAACGAT
1 ATTATCATTGTACATTCTTGGAAATAGAGAATCAAATTCAAATGCAACAGAGCGATTTCAACGAT
25942096 CTGGGGAAACTGTTAGTCGAATTTTTACTGATATGTTGCATATATTTGCTCGAATGGGAATAGAC
66 CTGGGGAAACTGTTAGTCGAATTTTTACTGATATGTTGCATATATTTGCTCGAATGGGAATAGAC
*
25942161 ACGATTAAACCCACTAAAGGTCAATTCGAGGAAATACCGAACTATATTCGACATGATACAAGATA
131 ACGATTAAACCCACTAAAGGTCAATTCGAGGAAATACCGAACCATATTCGACATGATACAAGATA
* *
25942226 TTGGCATCACTTTAAGGTAAAATTTACACAATTTTTATATTTTTAAAATATAAATTATTTATAAC
196 TTGGCATCACTTTAAGGTAAAATTTACACAATCTTTATATTTTTAAAACATAAATTATTTATAAC
*
25942291 TTTTATCTC-A-T-TATTTATTTTAAAGGATTGTATTGGAGCCATAGATGGAGCACACATAA
261 TTTTATCTCTACTGTATTTATTTTAAAGGATTGTATTGGAGCCATAGATGGAACACACATAA
*
25942350 ATTATCATTGTATATTCTTGGAAATAGAGAATCAAATTCAAATGCAACAGAGCGATTTCAACGAT
1 ATTATCATTGTACATTCTTGGAAATAGAGAATCAAATTCAAATGCAACAGAGCGATTTCAACGAT
*
25942415 CTGGGGAAACTGTTAGTTGAATTTTTACTGATATGTTGCATATATTTGCTCGAATGGGAATAGAC
66 CTGGGGAAACTGTTAGTCGAATTTTTACTGATATGTTGCATATATTTGCTCGAATGGGAATAGAC
* *
25942480 ACGATTAAACCCACTGAAGGTCAATTCGAGGAAGTACCGAACCATATTCGACATGATACAAGATA
131 ACGATTAAACCCACTAAAGGTCAATTCGAGGAAATACCGAACCATATTCGACATGATACAAGATA
* *
25942545 TTGGCCTCACTTTAAGGTAAAATTTACACAATCTTTATATTTTTAAAACATAAATTATTTCTAAC
196 TTGGCATCACTTTAAGGTAAAATTTACACAATCTTTATATTTTTAAAACATAAATTATTTATAAC
*
25942610 TTTTATCTCATTACTTGTATTTATTTTAAAGGATTGTATTGGGGCCATAGATGGAACACACATAA
261 TTTTATCTC--TAC-TGTATTTATTTTAAAGGATTGTATTGGAGCCATAGATGGAACACACATAA
25942675 A
1 A
25942676 AGCATGCATT
Statistics
Matches: 309, Mismatches: 11, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
319 260 0.84
322 1 0.00
324 1 0.00
325 47 0.15
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (322 bp):
ATTATCATTGTACATTCTTGGAAATAGAGAATCAAATTCAAATGCAACAGAGCGATTTCAACGAT
CTGGGGAAACTGTTAGTCGAATTTTTACTGATATGTTGCATATATTTGCTCGAATGGGAATAGAC
ACGATTAAACCCACTAAAGGTCAATTCGAGGAAATACCGAACCATATTCGACATGATACAAGATA
TTGGCATCACTTTAAGGTAAAATTTACACAATCTTTATATTTTTAAAACATAAATTATTTATAAC
TTTTATCTCTACTGTATTTATTTTAAAGGATTGTATTGGAGCCATAGATGGAACACACATAA
Found at i:25943535 original size:21 final size:21
Alignment explanation
Indices: 25943511--25943555 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
25943501 ATTTTAATAT
25943511 TTTATTAAATTAATTTATAAA
1 TTTATTAAATTAATTTATAAA
25943532 TTTATTAAATTAATTTATAAA
1 TTTATTAAATTAATTTATAAA
25943553 TTT
1 TTT
25943556 TCATATTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
TTTATTAAATTAATTTATAAA
Found at i:25944128 original size:48 final size:48
Alignment explanation
Indices: 25944057--25944159 Score: 197
Period size: 48 Copynumber: 2.1 Consensus size: 48
25944047 TTTTATTTCG
*
25944057 AAACTCAACGCTTCAATCTTATTATATCTTGTGATTTTCTTGGAAGCC
1 AAACTGAACGCTTCAATCTTATTATATCTTGTGATTTTCTTGGAAGCC
25944105 AAACTGAACGCTTCAATCTTATTATATCTTGTGATTTTCTTGGAAGCC
1 AAACTGAACGCTTCAATCTTATTATATCTTGTGATTTTCTTGGAAGCC
25944153 AAACTGA
1 AAACTGA
25944160 GGCTGGCGCT
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (48 bp):
AAACTGAACGCTTCAATCTTATTATATCTTGTGATTTTCTTGGAAGCC
Found at i:25944845 original size:2 final size:2
Alignment explanation
Indices: 25944838--25944868 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
25944828 GTTTGAATTT
25944838 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
25944869 TATATATATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:25946099 original size:2 final size:2
Alignment explanation
Indices: 25946092--25946124 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
25946082 GTAAATGCAT
25946092 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
25946125 TTAATTTAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:25952792 original size:27 final size:27
Alignment explanation
Indices: 25952760--25952833 Score: 107
Period size: 27 Copynumber: 2.7 Consensus size: 27
25952750 ATTTGTTTAG
25952760 GGTTTAGAGATTTTAAAAATAAATC-A
1 GGTTTAGAGATTTTAAAAATAAATCAA
25952786 GGATTTAGAGATTTTAAACAATAAATCAA
1 GG-TTTAGAGATTTTAAA-AATAAATCAA
25952815 GGTTTAG-GATTTTAGAAAA
1 GGTTTAGAGATTTTA-AAAA
25952834 ATTAATTAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 7
0.86 0.00 0.14
Matches are distributed among these distances:
26 2 0.05
27 24 0.55
28 15 0.34
29 3 0.07
ACGTcount: A:0.45, C:0.04, G:0.18, T:0.34
Consensus pattern (27 bp):
GGTTTAGAGATTTTAAAAATAAATCAA
Found at i:25952901 original size:33 final size:32
Alignment explanation
Indices: 25952814--25952905 Score: 116
Period size: 33 Copynumber: 2.8 Consensus size: 32
25952804 CAATAAATCA
*
25952814 AGGTTTA-GGATTTTAGAAAAATTAATTAAATT
1 AGGTTTAGGGTTTTTA-AAAAATTAATTAAATT
*
25952846 AGGTTTAAGGTTTTTAAGAAAATTAATTAAATT
1 AGGTTTAGGGTTTTTAA-AAAATTAATTAAATT
*
25952879 AGGGTTTAGGGTTTTTTAAAAA-TAATT
1 A-GGTTTAGGGTTTTTAAAAAATTAATT
25952906 TTGTGTTTAG
Statistics
Matches: 54, Mismatches: 3, Indels: 6
0.86 0.05 0.10
Matches are distributed among these distances:
32 13 0.24
33 27 0.50
34 14 0.26
ACGTcount: A:0.40, C:0.00, G:0.17, T:0.42
Consensus pattern (32 bp):
AGGTTTAGGGTTTTTAAAAAATTAATTAAATT
Found at i:25953310 original size:126 final size:125
Alignment explanation
Indices: 25952989--25953379 Score: 470
Period size: 126 Copynumber: 3.1 Consensus size: 125
25952979 GTTTTGTTTT
* * * *
25952989 TTTTTCTACAGTAG-TTTGAAAAAATAATAAT--G-AGATGGTTTTGAAAAAATAGTGA-CAAAA
1 TTTTTCTACAATAGTTTTGGAAAAATAATTATGAGAAGATGGTTTTGAAAAAATAAT-ATCAAAA
* * * * * * * *
25953049 ATGCTTCAAGCAGGATGCATTCTTAGCAAAAGTATTGAAAAAAAGCT-CTCATGTGAATGCTC
65 ACGCTTCAAGCAGGATGCACTATTAGCAAAATTACTG-AAAAAAGCTCCT-ACGTGGACGCTC
* * ** *
25953111 TTTTTCTATAATAGTTTCTGGAAAAATTAATTTTGAGAAGACAGTTTTGAAAAAATAATGTCAAA
1 TTTTTCTACAATAGTTT-TGGAAAAA-TAATTATGAGAAGATGGTTTTGAAAAAATAATATCAAA
* *
25953176 AACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCTACGTGGACGCTC
64 AACGCTTCAAGCAGGATGCACTATTAGCAAAATTACTGAAAAAAGCTCCTACGTGGACGCTC
* * *
25953238 TTTTTCTACAGTAGTTCTTGGAAAAATAATTATGAGAAGATGGTTTCGAAAAAATAATATAAAAA
1 TTTTTCTACAATAGTT-TTGGAAAAATAATTATGAGAAGATGGTTTTGAAAAAATAATATCAAAA
* *
25953303 ACGCTTCAAGCAGGATGCACCATTAGCAAAATTACTGAAAAAAGTTCCTACGTGGACGCTC
65 ACGCTTCAAGCAGGATGCACTATTAGCAAAATTACTGAAAAAAGCTCCTACGTGGACGCTC
25953364 TTTTTCTACAATAGTT
1 TTTTTCTACAATAGTT
25953380 CTTACTTACC
Statistics
Matches: 229, Mismatches: 31, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
122 12 0.05
123 2 0.01
124 7 0.03
125 5 0.02
126 105 0.46
127 41 0.18
128 57 0.25
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (125 bp):
TTTTTCTACAATAGTTTTGGAAAAATAATTATGAGAAGATGGTTTTGAAAAAATAATATCAAAAA
CGCTTCAAGCAGGATGCACTATTAGCAAAATTACTGAAAAAAGCTCCTACGTGGACGCTC
Found at i:25956891 original size:13 final size:13
Alignment explanation
Indices: 25956848--25956877 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
25956838 ATTATCCAAT
25956848 CCAACCAAATTAC
1 CCAACCAAATTAC
*
25956861 CCAACCCAATTAC
1 CCAACCAAATTAC
25956874 CCAA
1 CCAA
25956878 TTACCCAACC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.43, C:0.43, G:0.00, T:0.13
Consensus pattern (13 bp):
CCAACCAAATTAC
Found at i:25956948 original size:61 final size:60
Alignment explanation
Indices: 25956855--25956972 Score: 175
Period size: 61 Copynumber: 1.9 Consensus size: 60
25956845 AATCCAACCA
* *
25956855 AATTACCCAACCCAATTACCCAATTACCCAACCCAATAAAACTAAAACTAAAGTCTACCC
1 AATTACCCAACCAAATTACCCAATTACCCAACCCAATAAAAATAAAACTAAAGTCTACCC
* *
25956915 AATTACCCAACTAAAGTCTACCCAATTA-CCAACCTAATAAAAATAAAACTAAAGTCTA
1 AATTACCCAACCAAA-T-TACCCAATTACCCAACCCAATAAAAATAAAACTAAAGTCTA
25956973 ACTCTTAAGT
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
60 13 0.25
61 29 0.56
62 10 0.19
ACGTcount: A:0.47, C:0.30, G:0.03, T:0.20
Consensus pattern (60 bp):
AATTACCCAACCAAATTACCCAATTACCCAACCCAATAAAAATAAAACTAAAGTCTACCC
Found at i:25956951 original size:23 final size:23
Alignment explanation
Indices: 25956900--25956944 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
25956890 ATAAAACTAA
25956900 AACTAAAGTCTACCCAATTACCC
1 AACTAAAGTCTACCCAATTACCC
25956923 AACTAAAGTCTACCCAATTACC
1 AACTAAAGTCTACCCAATTACC
25956945 AACCTAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.40, C:0.33, G:0.04, T:0.22
Consensus pattern (23 bp):
AACTAAAGTCTACCCAATTACCC
Found at i:25957147 original size:9 final size:9
Alignment explanation
Indices: 25957133--25957172 Score: 62
Period size: 9 Copynumber: 4.4 Consensus size: 9
25957123 GTAGTGATTC
25957133 AATTCGGGT
1 AATTCGGGT
25957142 AATTCGGGT
1 AATTCGGGT
*
25957151 AATTCGAGT
1 AATTCGGGT
*
25957160 AATTCGGTT
1 AATTCGGGT
25957169 AATT
1 AATT
25957173 TTTAACCAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.28, C:0.10, G:0.25, T:0.38
Consensus pattern (9 bp):
AATTCGGGT
Found at i:25957674 original size:18 final size:18
Alignment explanation
Indices: 25957651--25957685 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
25957641 AAAAGAAAAT
* *
25957651 ATATAAGGGTTAGGATAC
1 ATATAAAGGCTAGGATAC
25957669 ATATAAAGGCTAGGATA
1 ATATAAAGGCTAGGATA
25957686 TACACTTGGC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.06, G:0.26, T:0.26
Consensus pattern (18 bp):
ATATAAAGGCTAGGATAC
Found at i:25965515 original size:28 final size:28
Alignment explanation
Indices: 25965460--25965516 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
25965450 ATTATACAAT
* *
25965460 AAAAATTAATTAAAATTACATAAATGAA
1 AAAAATTAAATAAAATTACAAAAATGAA
*
25965488 AAAAATTAAATAATATT-CAAAAATTGAA
1 AAAAATTAAATAAAATTACAAAAA-TGAA
25965516 A
1 A
25965517 TTAACCTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 5 0.20
28 20 0.80
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.28
Consensus pattern (28 bp):
AAAAATTAAATAAAATTACAAAAATGAA
Found at i:25966438 original size:17 final size:17
Alignment explanation
Indices: 25966406--25966455 Score: 73
Period size: 17 Copynumber: 2.8 Consensus size: 17
25966396 TAATAAATAA
25966406 AATTATCCAACCCAACCC
1 AATTA-CCAACCCAACCC
*
25966424 AATTACCATCCCAACCC
1 AATTACCAACCCAACCC
25966441 AATTACCCAACCCAA
1 AATTA-CCAACCCAA
25966456 TAAAACTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 16 0.55
18 13 0.45
ACGTcount: A:0.40, C:0.44, G:0.00, T:0.16
Consensus pattern (17 bp):
AATTACCAACCCAACCC
Found at i:25966496 original size:38 final size:39
Alignment explanation
Indices: 25966437--25966514 Score: 131
Period size: 38 Copynumber: 2.0 Consensus size: 39
25966427 TACCATCCCA
*
25966437 ACCCAATTACCCAACCCAATAAAACTAAAACTAAAGTCT
1 ACCCAATTACCCAACCCAATAAAAATAAAACTAAAGTCT
*
25966476 ACCCAATTA-CTAACCCAATAAAAATAAAACTAAAGTCT
1 ACCCAATTACCCAACCCAATAAAAATAAAACTAAAGTCT
25966514 A
1 A
25966515 ACTCTTAAGT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
38 28 0.76
39 9 0.24
ACGTcount: A:0.51, C:0.27, G:0.03, T:0.19
Consensus pattern (39 bp):
ACCCAATTACCCAACCCAATAAAAATAAAACTAAAGTCT
Found at i:25966669 original size:37 final size:37
Alignment explanation
Indices: 25966642--25966716 Score: 105
Period size: 37 Copynumber: 2.0 Consensus size: 37
25966632 TGTTAATTTC
* * *
25966642 AAGAATTATGTAATGTTTTTAATTATGTAGTGATTCA
1 AAGAATTATATAATATTTTTAATTATGTAGTAATTCA
* *
25966679 AAGACTTATATAATATTTTTAATTATGTAGTGATTCA
1 AAGAATTATATAATATTTTTAATTATGTAGTAATTCA
25966716 A
1 A
25966717 TTCGAGTAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.37, C:0.04, G:0.13, T:0.45
Consensus pattern (37 bp):
AAGAATTATATAATATTTTTAATTATGTAGTAATTCA
Found at i:25966738 original size:18 final size:19
Alignment explanation
Indices: 25966715--25966772 Score: 77
Period size: 18 Copynumber: 3.2 Consensus size: 19
25966705 GTAGTGATTC
*
25966715 AATTCGAG-TAATTCGGGT
1 AATTCGAGTTAATTCGGTT
*
25966733 AATTCG-GTTAATTTGGTT
1 AATTCGAGTTAATTCGGTT
25966751 AATTC-AGTTAATTCGGTT
1 AATTCGAGTTAATTCGGTT
25966769 AATT
1 AATT
25966773 TTTAACCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
17 1 0.03
18 34 0.97
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.43
Consensus pattern (19 bp):
AATTCGAGTTAATTCGGTT
Found at i:25966739 original size:9 final size:9
Alignment explanation
Indices: 25966723--25966772 Score: 73
Period size: 9 Copynumber: 5.6 Consensus size: 9
25966713 TCAATTCGAG
*
25966723 TAATTCGGG
1 TAATTCGGT
25966732 TAATTCGGT
1 TAATTCGGT
*
25966741 TAATTTGGT
1 TAATTCGGT
*
25966750 TAATTCAGT
1 TAATTCGGT
25966759 TAATTCGGT
1 TAATTCGGT
25966768 TAATT
1 TAATT
25966773 TTTAACCAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.26, C:0.08, G:0.20, T:0.46
Consensus pattern (9 bp):
TAATTCGGT
Found at i:25968803 original size:12 final size:12
Alignment explanation
Indices: 25968775--25968821 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 12
25968765 AGTACAAATT
*
25968775 ACAAAAATAATA
1 ACAAAAATAACA
*
25968787 GCAAAAATAACA
1 ACAAAAATAACA
* *
25968799 ACAAAAACAGCA
1 ACAAAAATAACA
25968811 A-AAAAATAACA
1 ACAAAAATAACA
25968822 GCACCAAAAC
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
11 8 0.29
12 20 0.71
ACGTcount: A:0.72, C:0.15, G:0.04, T:0.09
Consensus pattern (12 bp):
ACAAAAATAACA
Found at i:25970847 original size:11 final size:11
Alignment explanation
Indices: 25970827--25970870 Score: 70
Period size: 11 Copynumber: 3.9 Consensus size: 11
25970817 CTCAACACCA
25970827 AAATTGAGAGG
1 AAATTGAGAGG
*
25970838 AAATTTAGAGG
1 AAATTGAGAGG
25970849 AAATTGAGAGG
1 AAATTGAGAGG
25970860 AAATTTGAGAG
1 AAA-TTGAGAG
25970871 AGGATTAGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
11 23 0.77
12 7 0.23
ACGTcount: A:0.45, C:0.00, G:0.32, T:0.23
Consensus pattern (11 bp):
AAATTGAGAGG
Found at i:25970855 original size:22 final size:23
Alignment explanation
Indices: 25970827--25970870 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 23
25970817 CTCAACACCA
25970827 AAATTGAGAGGAAATTT-AGAGG
1 AAATTGAGAGGAAATTTGAGAGG
25970849 AAATTGAGAGGAAATTTGAGAG
1 AAATTGAGAGGAAATTTGAGAG
25970871 AGGATTAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.45, C:0.00, G:0.32, T:0.23
Consensus pattern (23 bp):
AAATTGAGAGGAAATTTGAGAGG
Found at i:25973033 original size:27 final size:27
Alignment explanation
Indices: 25973003--25973059 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
25972993 CCTAAATCTG
*
25973003 AATGTAAAAACCTTATGGTTTCATTAA
1 AATGTAAAAACCTTATAGTTTCATTAA
*
25973030 AATGTAAAAACCTTATAGTTTCGTTAA
1 AATGTAAAAACCTTATAGTTTCATTAA
25973057 AAT
1 AAT
25973060 ATAACACCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.37
Consensus pattern (27 bp):
AATGTAAAAACCTTATAGTTTCATTAA
Found at i:25973867 original size:12 final size:12
Alignment explanation
Indices: 25973846--25973877 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
25973836 AAAAAAGAAT
*
25973846 CTCTTCCTCTTC
1 CTCTTTCTCTTC
25973858 CTCTTTCTCTTC
1 CTCTTTCTCTTC
25973870 CTCTTTCT
1 CTCTTTCT
25973878 ATGTTGGCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (12 bp):
CTCTTTCTCTTC
Found at i:25974005 original size:21 final size:21
Alignment explanation
Indices: 25973981--25974034 Score: 60
Period size: 19 Copynumber: 2.7 Consensus size: 21
25973971 TTTTTTTTGC
*
25973981 AAAAT-AAAAGTTTTCTTTAAA
1 AAAATCAAAACTTTTC-TTAAA
*
25974002 AAAATCACAACTTTTCTT--A
1 AAAATCAAAACTTTTCTTAAA
25974021 AAAATCAAAACTTT
1 AAAATCAAAACTTT
25974035 ATTTCAAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 14 0.48
21 7 0.24
22 8 0.28
ACGTcount: A:0.50, C:0.13, G:0.02, T:0.35
Consensus pattern (21 bp):
AAAATCAAAACTTTTCTTAAA
Found at i:25974163 original size:145 final size:148
Alignment explanation
Indices: 25973999--25974302 Score: 386
Period size: 146 Copynumber: 2.1 Consensus size: 148
25973989 AGTTTTCTTT
*
25973999 AAAAAAATCACAACTTTTCTTAAAAATCAAA-ACTTTATTTCAAAATAGTTG-AAAAAGATCAAA
1 AAAAAAAT-ACAACTTTTCTTAAAAATCAAAGACTTTATTTCAAAATAGTTGAAAAAAAATCAAA
* * *
25974062 ACTTTGTTTTAAAAAATCTACACATTTTCTTTAAAATGACT-AA-AAAATAGATTTTTATTTTAA
65 ACTTTGTTTT-AAAAATCTAAAC-TTTCCTTTAAAATGACTAAAGAAAACAGATTTTTATTTT-A
25974125 AAAATCTAAAC-TCTC-TTTTA
127 AAAATCTAAACTTCTCTTTTTA
* * * ** ** *
25974145 AAAAAAATACTATTTTTCTTAAAGATCAAAGTTTTTATTTTGAAATAGTTGAAAAAAAATTAAAA
1 AAAAAAATACAACTTTTCTTAAAAATCAAAGACTTTATTTCAAAATAGTTGAAAAAAAATCAAAA
* * *
25974210 CTTTGTTTTAAAAATTTAAACTTTCCTTTAAAATGACTAAAGAAAACATATTTTTATTTTTAAAA
66 CTTTGTTTTAAAAATCTAAACTTTCCTTTAAAATGACTAAAGAAAACAGATTTTTATTTTAAAAA
25974275 TCTAAACTTTCTCTTTTTA
131 TCTAAAC-TTCTCTTTTTA
25974294 AAAAAAATA
1 AAAAAAATA
25974303 AAAAATAAAA
Statistics
Matches: 136, Mismatches: 15, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
145 35 0.26
146 47 0.35
147 36 0.26
148 4 0.03
149 14 0.10
ACGTcount: A:0.46, C:0.10, G:0.05, T:0.39
Consensus pattern (148 bp):
AAAAAAATACAACTTTTCTTAAAAATCAAAGACTTTATTTCAAAATAGTTGAAAAAAAATCAAAA
CTTTGTTTTAAAAATCTAAACTTTCCTTTAAAATGACTAAAGAAAACAGATTTTTATTTTAAAAA
TCTAAACTTCTCTTTTTA
Found at i:25974239 original size:20 final size:20
Alignment explanation
Indices: 25974199--25974242 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
25974189 ATAGTTGAAA
**
25974199 AAAAATTAAAACTTTGTTTT
1 AAAAATTAAAACTTTCCTTT
*
25974219 AAAAATTTAAACTTTCCTTT
1 AAAAATTAAAACTTTCCTTT
25974239 AAAA
1 AAAA
25974243 TGACTAAAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.48, C:0.09, G:0.02, T:0.41
Consensus pattern (20 bp):
AAAAATTAAAACTTTCCTTT
Found at i:25974731 original size:3 final size:3
Alignment explanation
Indices: 25974725--25974756 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
25974715 AGAAGAAGAA
25974725 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
25974757 ATGTCTCAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:25975706 original size:13 final size:13
Alignment explanation
Indices: 25975690--25975714 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25975680 AATAAAAATG
25975690 TAATTTAAATAAA
1 TAATTTAAATAAA
25975703 TAATTTAAATAA
1 TAATTTAAATAA
25975715 CAGCAAGAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
TAATTTAAATAAA
Found at i:25980177 original size:95 final size:96
Alignment explanation
Indices: 25980053--25980249 Score: 387
Period size: 95 Copynumber: 2.1 Consensus size: 96
25980043 CTTGAATAAC
25980053 TAATAAACAAACAATAAATAAACATATACATATACATATATATAATATCTAAAGATATATACTAA
1 TAATAAACAAACAATAAATAAACATATACATATACATATATATAATATCTAAAGATATATACTAA
25980118 CTTTTAGATATAAAATAGTCAATATAAATAT
66 CTTTTAGATATAAAATAGTCAATATAAATAT
25980149 TAATAAAC-AACAATAAATAAACATATACATATACATATATATAATATCTAAAGATATATACTAA
1 TAATAAACAAACAATAAATAAACATATACATATACATATATATAATATCTAAAGATATATACTAA
25980213 CTTTTAGATATAAAATAGTCAATATAAATAT
66 CTTTTAGATATAAAATAGTCAATATAAATAT
25980244 TAATAA
1 TAATAA
25980250 TTATATTATA
Statistics
Matches: 101, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
95 93 0.92
96 8 0.08
ACGTcount: A:0.55, C:0.09, G:0.03, T:0.32
Consensus pattern (96 bp):
TAATAAACAAACAATAAATAAACATATACATATACATATATATAATATCTAAAGATATATACTAA
CTTTTAGATATAAAATAGTCAATATAAATAT
Found at i:25981469 original size:22 final size:21
Alignment explanation
Indices: 25981444--25981499 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 21
25981434 TTCCCAAAGT
*
25981444 AGCGATTCT-TTCTCTTTAAGCC
1 AGCGATGCTCTTCTC-TT-AGCC
*
25981466 AGCGCTGCTCTTCTCTTAGCC
1 AGCGATGCTCTTCTCTTAGCC
*
25981487 AGCGTTGCTCTTC
1 AGCGATGCTCTTC
25981500 ACGGAGCCAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 16 0.53
22 9 0.30
23 5 0.17
ACGTcount: A:0.12, C:0.32, G:0.18, T:0.38
Consensus pattern (21 bp):
AGCGATGCTCTTCTCTTAGCC
Found at i:25981488 original size:21 final size:23
Alignment explanation
Indices: 25981453--25981499 Score: 71
Period size: 21 Copynumber: 2.1 Consensus size: 23
25981443 TAGCGATTCT
25981453 TTCTCTTTAAGCCAGCGCTGCTC
1 TTCTCTTTAAGCCAGCGCTGCTC
*
25981476 TTCTC-TT-AGCCAGCGTTGCTC
1 TTCTCTTTAAGCCAGCGCTGCTC
25981497 TTC
1 TTC
25981500 ACGGAGCCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 16 0.70
22 2 0.09
23 5 0.22
ACGTcount: A:0.11, C:0.34, G:0.17, T:0.38
Consensus pattern (23 bp):
TTCTCTTTAAGCCAGCGCTGCTC
Found at i:25981507 original size:21 final size:21
Alignment explanation
Indices: 25981462--25981514 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
25981452 TTTCTCTTTA
* **
25981462 AGCCAGCGCTGCTCTTCTCTT
1 AGCCAGCGCTGCTCTTCACGG
*
25981483 AGCCAGCGTTGCTCTTCACGG
1 AGCCAGCGCTGCTCTTCACGG
*
25981504 AGCCATCGCTG
1 AGCCAGCGCTG
25981515 TTCCTCGCGA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.13, C:0.36, G:0.25, T:0.26
Consensus pattern (21 bp):
AGCCAGCGCTGCTCTTCACGG
Found at i:25981582 original size:3 final size:3
Alignment explanation
Indices: 25981567--25981616 Score: 73
Period size: 3 Copynumber: 16.7 Consensus size: 3
25981557 GGAATTATGT
* * *
25981567 GAA GAA GAT GAA GAA GAA GAA GAA GAA GAA GAA GGA GAA GAA GGA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
25981615 GA
1 GA
25981617 GGAGGAGAAG
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.60, C:0.00, G:0.38, T:0.02
Consensus pattern (3 bp):
GAA
Found at i:25981637 original size:20 final size:20
Alignment explanation
Indices: 25981581--25981626 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
25981571 AAGATGAAGA
* *
25981581 AGAAGAAGAAGAAGAAGAAGG
1 AGAAGAAGGAGAAG-AGGAGG
25981602 AGAAGAAGGAGAAGAGGAGG
1 AGAAGAAGGAGAAGAGGAGG
25981622 AGAAG
1 AGAAG
25981627 CAGACGAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 10 0.43
21 13 0.57
ACGTcount: A:0.57, C:0.00, G:0.43, T:0.00
Consensus pattern (20 bp):
AGAAGAAGGAGAAGAGGAGG
Found at i:25982377 original size:4 final size:4
Alignment explanation
Indices: 25982368--25982404 Score: 53
Period size: 4 Copynumber: 10.0 Consensus size: 4
25982358 AGAGAGGGAG
25982368 AAGA AAGA AAGA AAGA AAGA AAG- AAG- AAGA AA-A AAGA
1 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA
25982405 GAAAGGAGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
3 9 0.29
4 22 0.71
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:25982388 original size:19 final size:20
Alignment explanation
Indices: 25982366--25982419 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 20
25982356 GAAGAGAGGG
25982366 AGAAGAAAGAAAGAAAGAAAGAA
1 AGAAGAAAGAAA-AAAG--AGAA
25982389 AGAAG-AAGAAAAAAGAGAA
1 AGAAGAAAGAAAAAAGAGAA
*
25982408 AGGAGAAGAGAA
1 AGAAGAA-AGAA
25982420 GGATAATGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
19 8 0.29
20 1 0.04
21 8 0.29
22 6 0.21
23 5 0.18
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (20 bp):
AGAAGAAAGAAAAAAGAGAA
Found at i:25982407 original size:12 final size:13
Alignment explanation
Indices: 25982351--25982407 Score: 64
Period size: 12 Copynumber: 4.4 Consensus size: 13
25982341 AGCAGTAGTG
**
25982351 GAGAAGAAGAGAGG
1 GAGAAGAA-AGAAA
25982365 GAGAAGAAAGAAA
1 GAGAAGAAAGAAA
25982378 GA-AAGAAAGAAA
1 GAGAAGAAAGAAA
25982390 GAAGAAGAAA-AAA
1 G-AGAAGAAAGAAA
25982403 GAGAA
1 GAGAA
25982408 AGGAGAAGAG
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
12 15 0.38
13 10 0.26
14 14 0.36
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (13 bp):
GAGAAGAAAGAAA
Found at i:25989405 original size:115 final size:115
Alignment explanation
Indices: 25989059--25989406 Score: 597
Period size: 115 Copynumber: 3.0 Consensus size: 115
25989049 TTTCCATCAC
*
25989059 CCATTTCAAGCCTGTACCTACAAGCCATTTGCACCCTTGTTCAAAGCATCAAAACATACCAAAAC
1 CCATTTCAAGCATGTACCTACAAGCCATTTGCACCCTTGTTCAAAGCATCAAAACATACCAAAAC
*
25989124 ATGCCTGAAATGACCAATTCACTATACCATTATTCCATCCAACCAATATG
66 ATGCATGAAATGACCAATTCACTATACCATTATTCCATCCAACCAATATG
* * * * *
25989174 CAATTTCAAGCATGTACCTACAAGCCATTTGCACCCTTTTTCAAAGAATCAAAACATATCTAAAC
1 CCATTTCAAGCATGTACCTACAAGCCATTTGCACCCTTGTTCAAAGCATCAAAACATACCAAAAC
*
25989239 ATGCATGAAATGACCAATTCACTATACCATTATTCCATCCAATCAATATG
66 ATGCATGAAATGACCAATTCACTATACCATTATTCCATCCAACCAATATG
*
25989289 CCATTTCAAGCATGTACCTACAAGCCATTTGCACCCTTGTTCAAAGCATCAAACCATACCAAAAC
1 CCATTTCAAGCATGTACCTACAAGCCATTTGCACCCTTGTTCAAAGCATCAAAACATACCAAAAC
* *
25989354 ATGCTTGAAATGACCAATTCACTATACCATTATTCCATACAACCAATATG
66 ATGCATGAAATGACCAATTCACTATACCATTATTCCATCCAACCAATATG
25989404 CCA
1 CCA
25989407 ATAAGGTATT
Statistics
Matches: 216, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
115 216 1.00
ACGTcount: A:0.37, C:0.28, G:0.08, T:0.26
Consensus pattern (115 bp):
CCATTTCAAGCATGTACCTACAAGCCATTTGCACCCTTGTTCAAAGCATCAAAACATACCAAAAC
ATGCATGAAATGACCAATTCACTATACCATTATTCCATCCAACCAATATG
Found at i:25998155 original size:294 final size:295
Alignment explanation
Indices: 25997616--25998204 Score: 1171
Period size: 294 Copynumber: 2.0 Consensus size: 295
25997606 AGTAAAATTC
25997616 ACTTATTTCAATAATAATTACTTGAGATAAACATAATAATTAAGCAAAAATATGGTAAAAACATA
1 ACTTATTTCAATAATAATTACTTGAGATAAACATAATAATTAAGCAAAAATATGGTAAAAACATA
25997681 TAGAAAATCCCTATATAATTTCAAGTTTACACACCCCCAAACTTAAACCATTGTTCGTCCTGAGT
66 TAGAAAATCCCTATATAATTTCAAGTTTACACACCCCCAAACTTAAACCATTGTTCGTCCTGAGT
25997746 AATGTTCATGCGTAGCATAATTTTTGCTAAAGCAATTTTGCAAAAAGATAAAGCAACATCAATCT
131 AATGTTCATGCGTAGCATAATTTTTGCTAAAGCAATTTTGCAAAAAGATAAAGCAACATCAATCT
25997811 TTGCACATAATCTTGCTTCAATAAAATCATGCTAAAAATATTTTTTATTCATAAGTAGCTCAAAT
196 TTGCACATAATCTTGCTTCAATAAAATCATGCTAAAAATATTTTTTATTCATAAGTAGCTCAAAT
25997876 ACAAATACTATTTCCAAACTTTATACTAAGTACAT
261 ACAAATACTATTTCCAAACTTTATACTAAGTACAT
25997911 ACTTATTTC-ATAATAATTACTTGAGATAAACATAATAATTAAGCAAAAATATGGTAAAAACATA
1 ACTTATTTCAATAATAATTACTTGAGATAAACATAATAATTAAGCAAAAATATGGTAAAAACATA
25997975 TAGAAAATCCCTATATAATTTCAAGTTTACACACCCCCAAACTTAAACCATTGTTCGTCCTGAGT
66 TAGAAAATCCCTATATAATTTCAAGTTTACACACCCCCAAACTTAAACCATTGTTCGTCCTGAGT
25998040 AATGTTCATGCGTAGCATAATTTTTGCTAAAGCAATTTTGCAAAAAGATAAAGCAACATCAATCT
131 AATGTTCATGCGTAGCATAATTTTTGCTAAAGCAATTTTGCAAAAAGATAAAGCAACATCAATCT
25998105 TTGCACATAATCTTGCTTCAATAAAATCATGCTAAAAATATTTTTTATTCATAAGTAGCTCAAAT
196 TTGCACATAATCTTGCTTCAATAAAATCATGCTAAAAATATTTTTTATTCATAAGTAGCTCAAAT
25998170 ACAAATACTATTTCCAAACTTTATACTAAGTACAT
261 ACAAATACTATTTCCAAACTTTATACTAAGTACAT
25998205 CATAATGTCA
Statistics
Matches: 294, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
294 285 0.97
295 9 0.03
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.33
Consensus pattern (295 bp):
ACTTATTTCAATAATAATTACTTGAGATAAACATAATAATTAAGCAAAAATATGGTAAAAACATA
TAGAAAATCCCTATATAATTTCAAGTTTACACACCCCCAAACTTAAACCATTGTTCGTCCTGAGT
AATGTTCATGCGTAGCATAATTTTTGCTAAAGCAATTTTGCAAAAAGATAAAGCAACATCAATCT
TTGCACATAATCTTGCTTCAATAAAATCATGCTAAAAATATTTTTTATTCATAAGTAGCTCAAAT
ACAAATACTATTTCCAAACTTTATACTAAGTACAT
Found at i:26005934 original size:29 final size:28
Alignment explanation
Indices: 26005901--26005963 Score: 108
Period size: 29 Copynumber: 2.2 Consensus size: 28
26005891 CATTGCTTGA
26005901 GACACAGGCATGTGACTCAGCCATGTGTT
1 GACACAGGCATGTGACTCAGCCATGTG-T
*
26005930 GACACGGGCATGTGACTCAGCCATGTGT
1 GACACAGGCATGTGACTCAGCCATGTGT
26005958 GACACA
1 GACACA
26005964 TGGCCCTATG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 6 0.19
29 26 0.81
ACGTcount: A:0.25, C:0.25, G:0.29, T:0.21
Consensus pattern (28 bp):
GACACAGGCATGTGACTCAGCCATGTGT
Found at i:26012055 original size:40 final size:41
Alignment explanation
Indices: 26011881--26012113 Score: 292
Period size: 41 Copynumber: 5.7 Consensus size: 41
26011871 AATTATTCCC
* *
26011881 TGAATTGCATATACGTGCCCCTGTTTGTACTTCAGTACCCT
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTTAGTACCCT
* * *
26011922 TGAATTGCACACACGTGCCCCTGTTTGAACTTTGGTA-CCT
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTTAGTACCCT
* *
26011962 CTGAATTGCACATACGTGCCCCTGTTTGTAATTTAGTACCCC
1 -TGAATTGCACATACGTGCCCCTGTTTGTACTTTAGTACCCT
*
26012004 TGAATTGCACATACGTGCCCCTGCTTGTACTTT-GTACCCT
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTTAGTACCCT
* * * * * *
26012044 TAAATTACACATATGTGCCCCTTTTTGAACTTCAGTAACCC-
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTTAGT-ACCCT
*
26012085 TGAATTGCATATACGTGCCCCTGTTTGTA
1 TGAATTGCACATACGTGCCCCTGTTTGTA
26012114 TCAAATTGCT
Statistics
Matches: 162, Mismatches: 26, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
40 35 0.22
41 121 0.75
42 6 0.04
ACGTcount: A:0.21, C:0.27, G:0.17, T:0.35
Consensus pattern (41 bp):
TGAATTGCACATACGTGCCCCTGTTTGTACTTTAGTACCCT
Found at i:26012090 original size:81 final size:82
Alignment explanation
Indices: 26011891--26012113 Score: 292
Period size: 81 Copynumber: 2.7 Consensus size: 82
26011881 TGAATTGCAT
* * *
26011891 ATACGTGCCCCTGTTTGTACTTCAGT-ACCCTTGAATTGCACACACGTGCCCCTGTTTGAACTTT
1 ATACGTGCCCCTGTTTGAACTTCAGTAACCC-TGAATTGCACATACGTGCCCCTGTTTGTACTTT
* *
26011955 GGTACCTCTGAATTGCAC
65 GGTACCTCTAAATTACAC
* * *
26011973 ATACGTGCCCCTGTTTGTAA-TTTAGTACCCCTGAATTGCACATACGTGCCCCTGCTTGTACTTT
1 ATACGTGCCCCTGTTTG-AACTTCAGTAACCCTGAATTGCACATACGTGCCCCTGTTTGTACTTT
26012037 -GTACC-CTTAAATTACAC
65 GGTACCTC-TAAATTACAC
* * *
26012054 ATATGTGCCCCTTTTTGAACTTCAGTAACCCTGAATTGCATATACGTGCCCCTGTTTGTA
1 ATACGTGCCCCTGTTTGAACTTCAGTAACCCTGAATTGCACATACGTGCCCCTGTTTGTA
26012114 TCAAATTGCT
Statistics
Matches: 123, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
80 3 0.02
81 64 0.52
82 52 0.42
83 4 0.03
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (82 bp):
ATACGTGCCCCTGTTTGAACTTCAGTAACCCTGAATTGCACATACGTGCCCCTGTTTGTACTTTG
GTACCTCTAAATTACAC
Found at i:26012099 original size:122 final size:123
Alignment explanation
Indices: 26011878--26012113 Score: 350
Period size: 122 Copynumber: 1.9 Consensus size: 123
26011868 GTTAATTATT
* * * *
26011878 CCCTGAATTGCATATACGTGCCCCTGTTTGTACTTCAGTACCCTTGAATTGCACACACGTGCCCC
1 CCCTGAATTGCACATACGTGCCCCTGCTTGTACTTCAGTACCCTTAAATTACACACACGTGCCCC
**
26011943 TGTTTGAACTTTGGTACCTCTGAATTGCACATACGTGCCCCTGTTTGTAATTTAGTAC
66 TGTTTGAACTTCAGTACCTCTGAATTGCACATACGTGCCCCTGTTTGTAATTTAGTAC
* * *
26012001 CCCTGAATTGCACATACGTGCCCCTGCTTGTACTT-TGTACCCTTAAATTACACATATGTGCCCC
1 CCCTGAATTGCACATACGTGCCCCTGCTTGTACTTCAGTACCCTTAAATTACACACACGTGCCCC
* *
26012065 TTTTTGAACTTCAGTAACC-CTGAATTGCATATACGTGCCCCTGTTTGTA
66 TGTTTGAACTTCAGT-ACCTCTGAATTGCACATACGTGCCCCTGTTTGTA
26012114 TCAAATTGCT
Statistics
Matches: 101, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
122 65 0.64
123 36 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (123 bp):
CCCTGAATTGCACATACGTGCCCCTGCTTGTACTTCAGTACCCTTAAATTACACACACGTGCCCC
TGTTTGAACTTCAGTACCTCTGAATTGCACATACGTGCCCCTGTTTGTAATTTAGTAC
Found at i:26012613 original size:41 final size:41
Alignment explanation
Indices: 26012556--26012826 Score: 334
Period size: 41 Copynumber: 6.6 Consensus size: 41
26012546 AATTATTCCC
* *
26012556 TGAATTGCATATACGTGCCCCTGTTTGTACTTCAGTACCCT
1 TGAATTGCACATACGTGCCCCTGTTTGAACTTCAGTACCCT
* **
26012597 TGAATTGCACACACGTGCCCCTGTTTGAACTTTGGTA-CCT
1 TGAATTGCACATACGTGCCCCTGTTTGAACTTCAGTACCCT
* *
26012637 CTGAATTGCACATACGTGCCCCTGTTTGTAA-TTTAGTACCCC
1 -TGAATTGCACATACGTGCCCCTGTTTG-AACTTCAGTACCCT
* * *
26012679 TGAATTGCACATACGTGCCCCTGCTTGTACTT-TGTACCCT
1 TGAATTGCACATACGTGCCCCTGTTTGAACTTCAGTACCCT
* * * *
26012719 TAAATTACACATATGTGCCCCTTTTTGAACTTCAGTAACCC-
1 TGAATTGCACATACGTGCCCCTGTTTGAACTTCAGT-ACCCT
* * *
26012760 TGAATTGCATATACGTGCCCCTGTTTGAACTTCGGTACCTT
1 TGAATTGCACATACGTGCCCCTGTTTGAACTTCAGTACCCT
26012801 TGAATTGCACATACGTGCCCCTGTTT
1 TGAATTGCACATACGTGCCCCTGTTT
26012827 ACACTCTGAT
Statistics
Matches: 196, Mismatches: 27, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
40 39 0.20
41 149 0.76
42 8 0.04
ACGTcount: A:0.21, C:0.27, G:0.17, T:0.35
Consensus pattern (41 bp):
TGAATTGCACATACGTGCCCCTGTTTGAACTTCAGTACCCT
Found at i:26012695 original size:82 final size:82
Alignment explanation
Indices: 26012555--26012826 Score: 370
Period size: 82 Copynumber: 3.3 Consensus size: 82
26012545 TAATTATTCC
* * * *
26012555 CTGAATTGCATATACGTGCCCCTGTTTGTACTTCAGTACCCTTGAATTGCACACACGTGCCCCTG
1 CTGAATTGCACATACGTGCCCCTGTTTGTAATTCAGTACCCCTGAATTGCACATACGTGCCCCTG
26012620 TTTGAACTTTGGTACCT
66 TTTGAACTTTGGTACCT
*
26012637 CTGAATTGCACATACGTGCCCCTGTTTGTAATTTAGTACCCCTGAATTGCACATACGTGCCCCTG
1 CTGAATTGCACATACGTGCCCCTGTTTGTAATTCAGTACCCCTGAATTGCACATACGTGCCCCTG
* *
26012702 CTTGTACTTT-GTACC-
66 TTTGAACTTTGGTACCT
* * * * * *
26012717 CTTAAATTACACATATGTGCCCCTTTTTG-AACTTCAGTAACCCTGAATTGCATATACGTGCCCC
1 C-TGAATTGCACATACGTGCCCCTGTTTGTAA-TTCAGTACCCCTGAATTGCACATACGTGCCCC
*
26012781 TGTTTGAACTTCGGTACCT
64 TGTTTGAACTTTGGTACCT
*
26012800 TTGAATTGCACATACGTGCCCCTGTTT
1 CTGAATTGCACATACGTGCCCCTGTTT
26012827 ACACTCTGAT
Statistics
Matches: 164, Mismatches: 22, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
80 3 0.02
81 66 0.40
82 95 0.58
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (82 bp):
CTGAATTGCACATACGTGCCCCTGTTTGTAATTCAGTACCCCTGAATTGCACATACGTGCCCCTG
TTTGAACTTTGGTACCT
Found at i:26012726 original size:675 final size:675
Alignment explanation
Indices: 26011436--26012786 Score: 2702
Period size: 675 Copynumber: 2.0 Consensus size: 675
26011426 GCAGCTAAAG
26011436 GTATCAAATTGCTATGAAATTTAAATGTGAGTGGAATTAAATGGTAAAAATACCATTCATCAGGT
1 GTATCAAATTGCTATGAAATTTAAATGTGAGTGGAATTAAATGGTAAAAATACCATTCATCAGGT
26011501 TATTGGACAATATTGGACATGGTTTAACTGAATATTAATGTAAATAACTAAGGTTAAAAATGTAA
66 TATTGGACAATATTGGACATGGTTTAACTGAATATTAATGTAAATAACTAAGGTTAAAAATGTAA
26011566 GTTAATAAATCAACTTAAAATTCAAACAAACAAAAGTGTGGTATCATCTTCCTAAAAGATTTTAT
131 GTTAATAAATCAACTTAAAATTCAAACAAACAAAAGTGTGGTATCATCTTCCTAAAAGATTTTAT
26011631 CCACCAAAAATATGGAAAGAAGAATCCATATTCAAGCTTTGAAATTTCGGCAAGTTCAAGTCTTT
196 CCACCAAAAATATGGAAAGAAGAATCCATATTCAAGCTTTGAAATTTCGGCAAGTTCAAGTCTTT
26011696 GCATGATCAAGATAAATCTCAACTGGATCTAAATTGGAGAAATGCGAAAATCACAGATTAGCTCG
261 GCATGATCAAGATAAATCTCAACTGGATCTAAATTGGAGAAATGCGAAAATCACAGATTAGCTCG
26011761 ACCATATTTCTACGCTTTAGTCGCCAAGGTAAGTTCATAGTATTTCAATATATAATTGAATTTCT
326 ACCATATTTCTACGCTTTAGTCGCCAAGGTAAGTTCATAGTATTTCAATATATAATTGAATTTCT
26011826 ACTTTTATTTCCACATTGTAGCTATGTAATTAAATGCTTATAGTTAATTATTCCCTGAATTGCAT
391 ACTTTTATTTCCACATTGTAGCTATGTAATTAAATGCTTATAGTTAATTATTCCCTGAATTGCAT
26011891 ATACGTGCCCCTGTTTGTACTTCAGTACCCTTGAATTGCACACACGTGCCCCTGTTTGAACTTTG
456 ATACGTGCCCCTGTTTGTACTTCAGTACCCTTGAATTGCACACACGTGCCCCTGTTTGAACTTTG
26011956 GTACCTCTGAATTGCACATACGTGCCCCTGTTTGTAATTTAGTACCCCTGAATTGCACATACGTG
521 GTACCTCTGAATTGCACATACGTGCCCCTGTTTGTAATTTAGTACCCCTGAATTGCACATACGTG
26012021 CCCCTGCTTGTACTTTGTACCCTTAAATTACACATATGTGCCCCTTTTTGAACTTCAGTAACCCT
586 CCCCTGCTTGTACTTTGTACCCTTAAATTACACATATGTGCCCCTTTTTGAACTTCAGTAACCCT
26012086 GAATTGCATATACGTGCCCCTGTTT
651 GAATTGCATATACGTGCCCCTGTTT
26012111 GTATCAAATTGCTATGAAATTTAAATGTGAGTGGAATTAAATGGTAAAAATACCATTCATCAGGT
1 GTATCAAATTGCTATGAAATTTAAATGTGAGTGGAATTAAATGGTAAAAATACCATTCATCAGGT
26012176 TATTGGACAATATTGGACATGGTTTAACTGAATATTAATGTAAATAACTAAGGTTAAAAATGTAA
66 TATTGGACAATATTGGACATGGTTTAACTGAATATTAATGTAAATAACTAAGGTTAAAAATGTAA
26012241 GTTAATAAATCAACTTAAAATTCAAACAAACAAAAGTGTGGTATCATCTTCCTAAAAGATTTTAT
131 GTTAATAAATCAACTTAAAATTCAAACAAACAAAAGTGTGGTATCATCTTCCTAAAAGATTTTAT
26012306 CCACCAAAAATATGGAAAGAAGAATCCATATTCAAGCTTTGAAATTTCGGCAAGTTCAAGTCTTT
196 CCACCAAAAATATGGAAAGAAGAATCCATATTCAAGCTTTGAAATTTCGGCAAGTTCAAGTCTTT
26012371 GCATGATCAAGATAAATCTCAACTGGATCTAAATTGGAGAAATGCGAAAATCACAGATTAGCTCG
261 GCATGATCAAGATAAATCTCAACTGGATCTAAATTGGAGAAATGCGAAAATCACAGATTAGCTCG
26012436 ACCATATTTCTACGCTTTAGTCGCCAAGGTAAGTTCATAGTATTTCAATATATAATTGAATTTCT
326 ACCATATTTCTACGCTTTAGTCGCCAAGGTAAGTTCATAGTATTTCAATATATAATTGAATTTCT
26012501 ACTTTTATTTCCACATTGTAGCTATGTAATTAAATGCTTATAGTTAATTATTCCCTGAATTGCAT
391 ACTTTTATTTCCACATTGTAGCTATGTAATTAAATGCTTATAGTTAATTATTCCCTGAATTGCAT
26012566 ATACGTGCCCCTGTTTGTACTTCAGTACCCTTGAATTGCACACACGTGCCCCTGTTTGAACTTTG
456 ATACGTGCCCCTGTTTGTACTTCAGTACCCTTGAATTGCACACACGTGCCCCTGTTTGAACTTTG
26012631 GTACCTCTGAATTGCACATACGTGCCCCTGTTTGTAATTTAGTACCCCTGAATTGCACATACGTG
521 GTACCTCTGAATTGCACATACGTGCCCCTGTTTGTAATTTAGTACCCCTGAATTGCACATACGTG
26012696 CCCCTGCTTGTACTTTGTACCCTTAAATTACACATATGTGCCCCTTTTTGAACTTCAGTAACCCT
586 CCCCTGCTTGTACTTTGTACCCTTAAATTACACATATGTGCCCCTTTTTGAACTTCAGTAACCCT
26012761 GAATTGCATATACGTGCCCCTGTTT
651 GAATTGCATATACGTGCCCCTGTTT
26012786 G
1 G
26012787 AACTTCGGTA
Statistics
Matches: 676, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
675 676 1.00
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (675 bp):
GTATCAAATTGCTATGAAATTTAAATGTGAGTGGAATTAAATGGTAAAAATACCATTCATCAGGT
TATTGGACAATATTGGACATGGTTTAACTGAATATTAATGTAAATAACTAAGGTTAAAAATGTAA
GTTAATAAATCAACTTAAAATTCAAACAAACAAAAGTGTGGTATCATCTTCCTAAAAGATTTTAT
CCACCAAAAATATGGAAAGAAGAATCCATATTCAAGCTTTGAAATTTCGGCAAGTTCAAGTCTTT
GCATGATCAAGATAAATCTCAACTGGATCTAAATTGGAGAAATGCGAAAATCACAGATTAGCTCG
ACCATATTTCTACGCTTTAGTCGCCAAGGTAAGTTCATAGTATTTCAATATATAATTGAATTTCT
ACTTTTATTTCCACATTGTAGCTATGTAATTAAATGCTTATAGTTAATTATTCCCTGAATTGCAT
ATACGTGCCCCTGTTTGTACTTCAGTACCCTTGAATTGCACACACGTGCCCCTGTTTGAACTTTG
GTACCTCTGAATTGCACATACGTGCCCCTGTTTGTAATTTAGTACCCCTGAATTGCACATACGTG
CCCCTGCTTGTACTTTGTACCCTTAAATTACACATATGTGCCCCTTTTTGAACTTCAGTAACCCT
GAATTGCATATACGTGCCCCTGTTT
Found at i:26012774 original size:122 final size:123
Alignment explanation
Indices: 26012553--26012823 Score: 368
Period size: 122 Copynumber: 2.2 Consensus size: 123
26012543 GTTAATTATT
* * * *
26012553 CCCTGAATTGCATATACGTGCCCCTGTTTGTACTTCAGTACCCTTGAATTGCACACACGTGCCCC
1 CCCTGAATTGCACATACGTGCCCCTGCTTGTACTTCAGTACCCTTAAATTACACACACGTGCCCC
** *
26012618 TGTTTGAACTTTGGTACCTCTGAATTGCACATACGTGCCCCTGTTTGTAA-TTTAGTAC
66 TGTTTGAACTTCAGTACCTCTGAATTGCACATACGTGCCCCTGTTTG-AACTTCAGTAC
* * *
26012676 CCCTGAATTGCACATACGTGCCCCTGCTTGTACTT-TGTACCCTTAAATTACACATATGTGCCCC
1 CCCTGAATTGCACATACGTGCCCCTGCTTGTACTTCAGTACCCTTAAATTACACACACGTGCCCC
* * *
26012740 TTTTTGAACTTCAGTAACC-CTGAATTGCATATACGTGCCCCTGTTTGAACTTCGGTAC
66 TGTTTGAACTTCAGT-ACCTCTGAATTGCACATACGTGCCCCTGTTTGAACTTCAGTAC
**
26012798 CTTTGAATTGCACATACGTGCCCCTG
1 CCCTGAATTGCACATACGTGCCCCTG
26012824 TTTACACTCT
Statistics
Matches: 131, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
121 2 0.02
122 93 0.71
123 36 0.27
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (123 bp):
CCCTGAATTGCACATACGTGCCCCTGCTTGTACTTCAGTACCCTTAAATTACACACACGTGCCCC
TGTTTGAACTTCAGTACCTCTGAATTGCACATACGTGCCCCTGTTTGAACTTCAGTAC
Found at i:26016828 original size:27 final size:26
Alignment explanation
Indices: 26016747--26016841 Score: 113
Period size: 25 Copynumber: 3.7 Consensus size: 26
26016737 TTGTACATGT
*
26016747 ATGCTCACACGAGTTGT-AAATTAGA
1 ATGCTCACACGAGCTGTGAAATTAGA
*
26016772 ATGCTCACACGAGCTATG-AATTAGA
1 ATGCTCACACGAGCTGTGAAATTAGA
* * *
26016797 ATGCTCACACGAGTTGTGAAAATTGGC
1 ATGCTCACACGAGCTGTG-AAATTAGA
*
26016824 CTGCTCACACGAGCTGTG
1 ATGCTCACACGAGCTGTG
26016842 GGTCTGAACG
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
25 38 0.64
27 21 0.36
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
ATGCTCACACGAGCTGTGAAATTAGA
Found at i:26033394 original size:61 final size:61
Alignment explanation
Indices: 26033272--26033394 Score: 142
Period size: 62 Copynumber: 2.0 Consensus size: 61
26033262 TTCACACGGA
* ** *
26033272 CGTGTAACTCACTGGTTGTGGATATGACCACACGGCCAGGGACATAGGCGTGTGCCTTGGC
1 CGTGTAACTCACTAGTTGTGGATAAAACCACACGGCCAGGGACATAGGCGTGTACCTTGGC
* * * *
26033333 CGTGTAACTCACTATTTGTGGTATAAAATCACATGGTCAGGGACACT-GGCGTGTACC-TGGC
1 CGTGTAACTCACTAGTTGTGG-ATAAAACCACACGGCCAGGGACA-TAGGCGTGTACCTTGGC
26033394 C
1 C
26033395 ATATGAGTCA
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
61 24 0.46
62 27 0.52
63 1 0.02
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (61 bp):
CGTGTAACTCACTAGTTGTGGATAAAACCACACGGCCAGGGACATAGGCGTGTACCTTGGC
Found at i:26037239 original size:43 final size:42
Alignment explanation
Indices: 26037191--26037350 Score: 164
Period size: 42 Copynumber: 3.7 Consensus size: 42
26037181 TGCCAACATT
* * *
26037191 CCAGACGTGGTCTTACATGTAATCAACTATCGATGCCACTGTC
1 CCAGACATGGTCTTACACGAAATCAA-TATCGATGCCACTGTC
* * *
26037234 CCAGACAGGGTCTTACACGAAATC-ATATACGATGCCAATATC
1 CCAGACATGGTCTTACACGAAATCAATAT-CGATGCCACTGTC
*
26037276 CCAGACATGGTCTTACACGTAAATCTCAA-ATCAATGCCAAC-GTC
1 CCAGACATGGTCTTACACG-AAA--TCAATATCGATGCC-ACTGTC
*
26037320 CCAGACATGGTCTTACATGAAATCACATATC
1 CCAGACATGGTCTTACACGAAATCA-ATATC
26037351 AGATTCCTAT
Statistics
Matches: 98, Mismatches: 11, Indels: 16
0.78 0.09 0.13
Matches are distributed among these distances:
41 6 0.06
42 31 0.32
43 29 0.30
44 26 0.27
45 5 0.05
46 1 0.01
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.24
Consensus pattern (42 bp):
CCAGACATGGTCTTACACGAAATCAATATCGATGCCACTGTC
Found at i:26037280 original size:42 final size:43
Alignment explanation
Indices: 26037178--26037350 Score: 158
Period size: 43 Copynumber: 4.0 Consensus size: 43
26037168 AAAGCTCGTA
* * *
26037178 CGATGCCAACATTCCAGAC-GTGGTCTTACATGTAATCA-ACTAT
1 CGATGCCAACATCCCAGACAG-GGTCTTACACGAAATCATA-TAT
*
26037221 CGATGCC-ACTGTCCCAGACAGGGTCTTACACGAAATCATATA-
1 CGATGCCAAC-ATCCCAGACAGGGTCTTACACGAAATCATATAT
* * *
26037263 CGATGCCAATATCCCAGACATGGTCTTACACGTAAATC-TCAAAT
1 CGATGCCAACATCCCAGACAGGGTCTTACACG-AAATCAT-ATAT
* * * * *
26037307 CAATGCCAACGTCCCAGACATGGTCTTACATGAAATCACATAT
1 CGATGCCAACATCCCAGACAGGGTCTTACACGAAATCATATAT
26037350 C
1 C
26037351 AGATTCCTAT
Statistics
Matches: 108, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
42 30 0.28
43 48 0.44
44 30 0.28
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (43 bp):
CGATGCCAACATCCCAGACAGGGTCTTACACGAAATCATATAT
Found at i:26037333 original size:86 final size:84
Alignment explanation
Indices: 26037176--26037344 Score: 216
Period size: 86 Copynumber: 2.0 Consensus size: 84
26037166 GAAAAGCTCG
* * * *
26037176 TACGATGCCAACATTCCAGACGTGGTCTTACATGTAATCAACTATCGATGCCACTGTCCCAGACA
1 TACGATGCCAACATCCCAGACATGGTCTTACACGTAATCAAC-ATCAATGCCACTGTCCCAGACA
26037241 GGGTCTTACACGAAATCATA
65 GGGTCTTACACGAAATCATA
*
26037261 TACGATGCCAATATCCCAGACATGGTCTTACACGTAAATCTCAA-ATCAATGCCAAC-GTCCCAG
1 TACGATGCCAACATCCCAGACATGGTCTTACACGT-AA--TCAACATCAATGCC-ACTGTCCCAG
* *
26037324 ACATGGTCTTACATGAAATCA
62 ACAGGGTCTTACACGAAATCA
26037345 CATATCAGAT
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
85 31 0.42
86 36 0.49
87 2 0.03
88 4 0.05
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (84 bp):
TACGATGCCAACATCCCAGACATGGTCTTACACGTAATCAACATCAATGCCACTGTCCCAGACAG
GGTCTTACACGAAATCATA
Found at i:26048666 original size:15 final size:15
Alignment explanation
Indices: 26048646--26048680 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
26048636 CCTCGGGATA
26048646 TGCTAAAGAACGATC
1 TGCTAAAGAACGATC
*
26048661 TGCTAAAGAATGATC
1 TGCTAAAGAACGATC
26048676 TGCTA
1 TGCTA
26048681 GTTGAAGTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (15 bp):
TGCTAAAGAACGATC
Found at i:26056379 original size:20 final size:20
Alignment explanation
Indices: 26056346--26056383 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26056336 AATTAAATTA
26056346 AATTAATTACAAACAGATCC
1 AATTAATTACAAACAGATCC
26056366 AATTATATTA-AAACAGAT
1 AATTA-ATTACAAACAGAT
26056384 TGAAAGAGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.53, C:0.13, G:0.05, T:0.29
Consensus pattern (20 bp):
AATTAATTACAAACAGATCC
Found at i:26057527 original size:73 final size:73
Alignment explanation
Indices: 26057450--26057585 Score: 193
Period size: 73 Copynumber: 1.9 Consensus size: 73
26057440 AAATGATAAT
** * *
26057450 TTTAATGTTAGTAAAATATTT-GTATAAATAAATTTACTTAATAAGAAAATTTATTATACTTATG
1 TTTAATGTTACCAAAATATTTGGT-TAAATAAATTTACTTAATAAAAAAATTTATCATACTTATG
26057514 AATAAGAAA
65 AATAAGAAA
* * *
26057523 TTTAATTTTACCAAAATATTTGGTTAAATAAATTTATTTGATAAAAAAATTTATCATACTTAT
1 TTTAATGTTACCAAAATATTTGGTTAAATAAATTTACTTAATAAAAAAATTTATCATACTTAT
26057586 AGATAAAAAT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
73 53 0.96
74 2 0.04
ACGTcount: A:0.46, C:0.04, G:0.07, T:0.43
Consensus pattern (73 bp):
TTTAATGTTACCAAAATATTTGGTTAAATAAATTTACTTAATAAAAAAATTTATCATACTTATGA
ATAAGAAA
Found at i:26058346 original size:16 final size:18
Alignment explanation
Indices: 26058317--26058349 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
26058307 TTGTTTTAAG
26058317 TTTTAAAATATTTATTTA
1 TTTTAAAATATTTATTTA
26058335 TTTT-AAAT-TTTATTT
1 TTTTAAAATATTTATTT
26058350 TTATCTCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTAAAATATTTATTTA
Found at i:26058679 original size:30 final size:31
Alignment explanation
Indices: 26058643--26058713 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 31
26058633 TTATCCAGGA
* *
26058643 GTAAATATTTAAAATTTGAAGGGTTAA-AGT
1 GTAAATATTTAAAAGTTGAAGGATTAATAGT
** *
26058673 GTAAATATGAAAAAGTTGAAGGATTAATTGT
1 GTAAATATTTAAAAGTTGAAGGATTAATAGT
*
26058704 GAAAATATTT
1 GTAAATATTT
26058714 TAAGGGTGGA
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
30 23 0.72
31 9 0.28
ACGTcount: A:0.45, C:0.00, G:0.20, T:0.35
Consensus pattern (31 bp):
GTAAATATTTAAAAGTTGAAGGATTAATAGT
Found at i:26058996 original size:24 final size:25
Alignment explanation
Indices: 26058932--26058996 Score: 68
Period size: 24 Copynumber: 2.7 Consensus size: 25
26058922 AAATAAATAA
26058932 ATTTTAGTTTATA-ATATTTTATTTG
1 ATTTTA-TTTATATATATTTTATTTG
26058957 ATTTT-TTTA-ATGATATTTTA-TT-
1 ATTTTATTTATAT-ATATTTTATTTG
26058979 ATTTTATTTAGTATATAT
1 ATTTTATTTA-TATATAT
26058997 ATGTGGAAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.29
24 12 0.34
25 7 0.20
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (25 bp):
ATTTTATTTATATATATTTTATTTG
Found at i:26063335 original size:26 final size:26
Alignment explanation
Indices: 26063245--26063397 Score: 150
Period size: 26 Copynumber: 5.8 Consensus size: 26
26063235 TATCTGGATC
* * *
26063245 GAAATACCCCGAAGGGTAAAATGACC
1 GAAATACCTCGTAGGGTAAAATGACT
*
26063271 GAAATACC-CTTGATGGGTAAAATGACT
1 GAAATACCTCGT-A-GGGTAAAATGACT
*
26063298 GAAATACCTCGTAGGGTAGAAT-ACT
1 GAAATACCTCGTAGGGTAAAATGACT
*
26063323 GAAATACCTTCGTAGGATAAAATGACT
1 GAAATACC-TCGTAGGGTAAAATGACT
* * *
26063350 GAAATACCCCTGTAGGGTAGAAT-ATT
1 GAAATACCTC-GTAGGGTAAAATGACT
*
26063376 GAAATACCCCTGTAGGGTAAAA
1 GAAATACCTC-GTAGGGTAAAA
26063398 ATAACCGTAA
Statistics
Matches: 109, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
25 12 0.11
26 53 0.49
27 42 0.39
28 2 0.02
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (26 bp):
GAAATACCTCGTAGGGTAAAATGACT
Found at i:26063441 original size:81 final size:81
Alignment explanation
Indices: 26063334--26063599 Score: 290
Period size: 81 Copynumber: 3.3 Consensus size: 81
26063324 AAATACCTTC
* * * * * * *
26063334 GTAGGATAAAATGA-CTGAAATACCCCTGTAGGGTAGAAT-ATTGAAATACCCCTGTAGGGTAAA
1 GTAGGGTAAAATGATC-GTAATGCCCCTGTAGGATAAAATAATCGTAATACCCCTGTAGGGT-AA
*
26063397 AATAACCGTAATGCCCCT
64 AATGACCGTAATGCCCCT
* * * * *
26063415 GTAGGGTAAAATGATCGTAATGCCCCTGTAGGTTAAAATAACCGTAATGCCTCTGTAGGGTCAAA
1 GTAGGGTAAAATGATCGTAATGCCCCTGTAGGATAAAATAATCGTAATACCCCTGTAGGGTAAAA
*
26063480 TGATCGTAATGCCCCT
66 TGACCGTAATGCCCCT
* * *
26063496 ATAGGGTCAAATGATCGTAATGCCCCTGTAGGATAAAATGATCGTAATACCCCTGTAGGGTAAAA
1 GTAGGGTAAAATGATCGTAATGCCCCTGTAGGATAAAATAATCGTAATACCCCTGTAGGGTAAAA
*
26063561 TGACCATAATG-CCCT
66 TGACCGTAATGCCCCT
* *
26063576 GGT-GGGT-AAATGACCATAATGCCC
1 -GTAGGGTAAAATGATCGTAATGCCC
26063600 TGGTGGGTAA
Statistics
Matches: 156, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
79 15 0.10
80 8 0.05
81 116 0.74
82 17 0.11
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.25
Consensus pattern (81 bp):
GTAGGGTAAAATGATCGTAATGCCCCTGTAGGATAAAATAATCGTAATACCCCTGTAGGGTAAAA
TGACCGTAATGCCCCT
Found at i:26063453 original size:54 final size:54
Alignment explanation
Indices: 26063356--26063599 Score: 289
Period size: 54 Copynumber: 4.6 Consensus size: 54
26063346 GACTGAAATA
* * * *
26063356 CCCCTGTAGGGTAGAAT-ATTGAAATACCCCTGTAGGGTAAAAATAACCGTAATG
1 CCCCTGTAGGGTAAAATGATCGTAATGCCCCTGTAGGGT-AAAATAACCGTAATG
*
26063410 CCCCTGTAGGGTAAAATGATCGTAATGCCCCTGTAGGTTAAAATAACCGTAATG
1 CCCCTGTAGGGTAAAATGATCGTAATGCCCCTGTAGGGTAAAATAACCGTAATG
* * * * * *
26063464 CCTCTGTAGGGTCAAATGATCGTAATGCCCCTATAGGGTCAAATGATCGTAATG
1 CCCCTGTAGGGTAAAATGATCGTAATGCCCCTGTAGGGTAAAATAACCGTAATG
* * * *
26063518 CCCCTGTAGGATAAAATGATCGTAATACCCCTGTAGGGTAAAATGACCATAATG
1 CCCCTGTAGGGTAAAATGATCGTAATGCCCCTGTAGGGTAAAATAACCGTAATG
* *
26063572 -CCCTGGT-GGGT-AAATGACCATAATGCCC
1 CCCCT-GTAGGGTAAAATGATCGTAATGCCC
26063600 TGGTGGGTAA
Statistics
Matches: 164, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
52 14 0.09
53 7 0.04
54 126 0.77
55 17 0.10
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (54 bp):
CCCCTGTAGGGTAAAATGATCGTAATGCCCCTGTAGGGTAAAATAACCGTAATG
Found at i:26063570 original size:27 final size:27
Alignment explanation
Indices: 26063247--26063595 Score: 195
Period size: 27 Copynumber: 13.1 Consensus size: 27
26063237 TCTGGATCGA
*
26063247 AATACCCC-GAAGGGTAAAATGACCGA-
1 AATACCCCTGTAGGGTAAAATGACC-AT
* *
26063273 AATACCCTTG-ATGGGTAAAATGACTGA-
1 AATACCCCTGTA-GGGTAAAATGAC-CAT
* * *
26063300 AATACCTC-GTAGGGTAGAAT-ACTGA-
1 AATACCCCTGTAGGGTAAAATGAC-CAT
* * *
26063325 AATA-CCTTCGTAGGATAAAATGACTGA-
1 AATACCCCT-GTAGGGTAAAATGAC-CAT
* **
26063352 AATACCCCTGTAGGGTAGAAT-ATTGA-
1 AATACCCCTGTAGGGTAAAATGA-CCAT
* *
26063378 AATACCCCTGTAGGGTAAAAATAACCGT
1 AATACCCCTGTAGGGT-AAAATGACCAT
* * *
26063406 AATGCCCCTGTAGGGTAAAATGATCGT
1 AATACCCCTGTAGGGTAAAATGACCAT
* * * *
26063433 AATGCCCCTGTAGGTTAAAATAACCGT
1 AATACCCCTGTAGGGTAAAATGACCAT
* * * * *
26063460 AATGCCTCTGTAGGGTCAAATGATCGT
1 AATACCCCTGTAGGGTAAAATGACCAT
* * * * *
26063487 AATGCCCCTATAGGGTCAAATGATCGT
1 AATACCCCTGTAGGGTAAAATGACCAT
* * * *
26063514 AATGCCCCTGTAGGATAAAATGATCGT
1 AATACCCCTGTAGGGTAAAATGACCAT
26063541 AATACCCCTGTAGGGTAAAATGACCAT
1 AATACCCCTGTAGGGTAAAATGACCAT
*
26063568 AAT-GCCCTGGT-GGGT-AAATGACCAT
1 AATACCCCT-GTAGGGTAAAATGACCAT
26063593 AAT
1 AAT
26063596 GCCCTGGTGG
Statistics
Matches: 272, Mismatches: 38, Indels: 27
0.81 0.11 0.08
Matches are distributed among these distances:
24 1 0.00
25 22 0.08
26 54 0.20
27 176 0.65
28 19 0.07
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAATGACCAT
Found at i:26063592 original size:25 final size:25
Alignment explanation
Indices: 26063553--26063614 Score: 115
Period size: 25 Copynumber: 2.4 Consensus size: 25
26063543 TACCCCTGTA
26063553 GGGTAAAATGACCATAATGCCCTGGT
1 GGGT-AAATGACCATAATGCCCTGGT
26063579 GGGTAAATGACCATAATGCCCTGGT
1 GGGTAAATGACCATAATGCCCTGGT
26063604 GGGTAAATGAC
1 GGGTAAATGAC
26063615 TAATTTTTCC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 32 0.89
26 4 0.11
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.23
Consensus pattern (25 bp):
GGGTAAATGACCATAATGCCCTGGT
Found at i:26063784 original size:64 final size:64
Alignment explanation
Indices: 26063694--26063847 Score: 254
Period size: 64 Copynumber: 2.4 Consensus size: 64
26063684 TGTGTGCTGA
* * *
26063694 TCATATCACTGTTACTGATGGCTTTGTACCGATCATGTTACCGTTGCTGATGGCTGTGTGCCAT
1 TCATATCACTGCTACTGATGGCTTTGTACCGATCATGTTACCGTTACTGATGGCTGTGTGCCAG
* *
26063758 TCATATCACTGCTACTGATGGCTTTGTGCCGATCATGTTACCGTTACTGATGGCTGTGTGCCGG
1 TCATATCACTGCTACTGATGGCTTTGTACCGATCATGTTACCGTTACTGATGGCTGTGTGCCAG
*
26063822 TCATATCACTGCTACTAATGGCTTTG
1 TCATATCACTGCTACTGATGGCTTTG
26063848 AGTCAATCAC
Statistics
Matches: 84, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 84 1.00
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (64 bp):
TCATATCACTGCTACTGATGGCTTTGTACCGATCATGTTACCGTTACTGATGGCTGTGTGCCAG
Found at i:26063843 original size:32 final size:32
Alignment explanation
Indices: 26063683--26063844 Score: 173
Period size: 32 Copynumber: 5.1 Consensus size: 32
26063673 CTATGTATGA
*
26063683 CTGTGTGCTGATCATATCACTGTTACTGATGG
1 CTGTGTGCCGATCATATCACTGTTACTGATGG
* * * * * *
26063715 CTTTGTACCGATCATGTTACCGTTGCTGATGG
1 CTGTGTGCCGATCATATCACTGTTACTGATGG
*
26063747 CTGTGTGCC-ATTCATATCACTGCTACTGATGG
1 CTGTGTGCCGA-TCATATCACTGTTACTGATGG
* * * *
26063779 CTTTGTGCCGATCATGTTACCGTTACTGATGG
1 CTGTGTGCCGATCATATCACTGTTACTGATGG
* * *
26063811 CTGTGTGCCGGTCATATCACTGCTACTAATGG
1 CTGTGTGCCGATCATATCACTGTTACTGATGG
26063843 CT
1 CT
26063845 TTGAGTCAAT
Statistics
Matches: 102, Mismatches: 26, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
31 1 0.01
32 100 0.98
33 1 0.01
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.36
Consensus pattern (32 bp):
CTGTGTGCCGATCATATCACTGTTACTGATGG
Found at i:26063955 original size:26 final size:26
Alignment explanation
Indices: 26063926--26063978 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26063916 GGCTCTTAGC
* * *
26063926 CATTCTGACTATTGGCAGCTCTGCTG
1 CATTATGACTACTGGCAGCTATGCTG
*
26063952 CATTATTACTACTGGCAGCTATGCTG
1 CATTATGACTACTGGCAGCTATGCTG
26063978 C
1 C
26063979 GATATTGGTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.34
Consensus pattern (26 bp):
CATTATGACTACTGGCAGCTATGCTG
Done.