Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47972186
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2603476 characters in sequence are not A, C, G, or T
File 89 of 145
Found at i:30458601 original size:41 final size:41
Alignment explanation
Indices: 30458538--30458654 Score: 182
Period size: 41 Copynumber: 2.9 Consensus size: 41
30458528 TTTCGAGGCA
30458538 TTAGCGGCGTTTTTGGAA-AAGCGCCGCTAATGCTCGGGGCT
1 TTAGCGGCGTTTTT-GAAGAAGCGCCGCTAATGCTCGGGGCT
* *
30458579 TTAGCGGCATTTTTAAAGAAGCGCCGCTAATGCTCGGGGCT
1 TTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCGGGGCT
* *
30458620 TTAGCGACGTTTTTGAAGAAGCGCCTCTAATGCTC
1 TTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTC
30458655 TATTTTTAAA
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
40 2 0.03
41 67 0.97
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (41 bp):
TTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCGGGGCT
Found at i:30462010 original size:23 final size:23
Alignment explanation
Indices: 30461985--30462328 Score: 258
Period size: 23 Copynumber: 15.0 Consensus size: 23
30461975 ATGGTGGATT
* *
30461985 TGTAAATTTAAGTGTTTAAATGT
1 TGTAAATTGAAGTGTTTAAATGC
*
30462008 TGTAAATTGAAGTGTTTAAGTGC
1 TGTAAATTGAAGTGTTTAAATGC
* * * **
30462031 TGCAAATTCAAGTATTTAGTTGC
1 TGTAAATTGAAGTGTTTAAATGC
* *
30462054 TGGAAATTG-AGATGTTT-TATCGC
1 TGTAAATTGAAG-TGTTTAAAT-GC
* * * *
30462077 TAT-AATTGAGGTGTATAAATGT
1 TGTAAATTGAAGTGTTTAAATGC
*
30462099 TGTTAATTGATA-TG-TTAAATTGC
1 TGTAAATTGA-AGTGTTTAAA-TGC
* * *
30462122 TGCAAATTTAAGTGTTTAAGTGC
1 TGTAAATTGAAGTGTTTAAATGC
* *
30462145 TGCAAATTTAAGTGTTTAAATGC
1 TGTAAATTGAAGTGTTTAAATGC
*
30462168 TGTAAATTGAAGTGTTTAAGTGC
1 TGTAAATTGAAGTGTTTAAATGC
* *
30462191 TGCAAATTGAAGTGTTT-TATAGC
1 TGTAAATTGAAGTGTTTAAAT-GC
* * *
30462214 TGT-AATTGATGTGTATAAATGT
1 TGTAAATTGAAGTGTTTAAATGC
*
30462236 TGTTAATTGATA-TG-TTAAATTGC
1 TGTAAATTGA-AGTGTTTAAA-TGC
* * *
30462259 TGCAAATTTAAGTGTTTAAGTGC
1 TGTAAATTGAAGTGTTTAAATGC
*
30462282 TGCAAATTGAAGTGTTTAAATGC
1 TGTAAATTGAAGTGTTTAAATGC
*
30462305 TGTAAATTAAAGTG-TTAAAGTGC
1 TGTAAATTGAAGTGTTTAAA-TGC
30462328 T
1 T
30462329 ACTTTCCATT
Statistics
Matches: 254, Mismatches: 50, Indels: 34
0.75 0.15 0.10
Matches are distributed among these distances:
22 46 0.18
23 200 0.79
24 8 0.03
ACGTcount: A:0.32, C:0.06, G:0.21, T:0.41
Consensus pattern (23 bp):
TGTAAATTGAAGTGTTTAAATGC
Found at i:30462161 original size:91 final size:91
Alignment explanation
Indices: 30461996--30462206 Score: 214
Period size: 91 Copynumber: 2.3 Consensus size: 91
30461986 GTAAATTTAA
* * *
30461996 GTGTTTAAATGTTGTAAATTGAAGTGTTTAAGTGCTGCAAATTCAAGTATTTAGTTGCTGGAAAT
1 GTGTATAAATGTTGTAAATTGAAGTGTTAAAGTGCTGCAAATTCAAGTATTTAGTTGCTGCAAAT
*
30462061 TGAGATGTTTTATCGCTATAATTGAG
66 TAAGATGTTTTATCGCTATAATTGAG
* * * *
30462087 GTGTATAAATGTTGTTAATTGATA-TGTTAAATTGCTGCAAATTTAAGTGTTTAAG-TGCTGCAA
1 GTGTATAAATGTTGTAAATTGA-AGTGTTAAAGTGCTGCAAATTCAAGTATTT-AGTTGCTGCAA
* * *
30462150 ATTTAAG-TGTTTAAAT-GCTGTAAATTGAA
64 A-TTAAGATGTTT-TATCGCTAT-AATTGAG
* * * *
30462179 GTGTTTAAGTGCTGCAAATTGAAGTGTT
1 GTGTATAAATGTTGTAAATTGAAGTGTT
30462207 TTATAGCTGT
Statistics
Matches: 98, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
91 62 0.63
92 36 0.37
ACGTcount: A:0.31, C:0.06, G:0.22, T:0.41
Consensus pattern (91 bp):
GTGTATAAATGTTGTAAATTGAAGTGTTAAAGTGCTGCAAATTCAAGTATTTAGTTGCTGCAAAT
TAAGATGTTTTATCGCTATAATTGAG
Found at i:30462220 original size:114 final size:115
Alignment explanation
Indices: 30462001--30462321 Score: 316
Period size: 114 Copynumber: 2.8 Consensus size: 115
30461991 TTTAAGTGTT
* * * * ** *
30462001 TAAATGTTGTAAATTGAAGTGTTTAAGTGCTGCAAATTCAAGTATTTAGTTGCTGGAAATTG-AG
1 TAAATGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGCAAATTGAAG
* * *
30462065 ATGTTTTAT-C-GCTATAATTGAGGTG-TATAAATGTTGTTAATTGATATGT-
66 -TGTTTAATGCTGC-A-AATTGAAGTGTTATAAATGCTGTTAATTGATATGTA
* *
30462114 TAAATTGCTGCAAATTTAAGTGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGTAAATTGAA
1 TAAA-TGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGCAAATTGAA
* * *
30462179 GTGTTTAAGTGCTGCAAATTGAAGTGTTTTATA-GCTG-TAATTGATGTGTA
65 GTGTTTAA-TGCTGCAAATTGAAGTGTTATAAATGCTGTTAATTGATATGTA
* ** * * *
30462229 TAAATGTTGTTAATTGATA-TGTTAAATTGCTGCAAATTTAAGTGTTTAAGTGCTGCAAATTGAA
1 TAAATGCTGCAAATTGA-AGTGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGCAAATTGAA
* *
30462293 GTGTTTAAATGCTGTAAATTAAAGTGTTA
65 GTGTTT-AATGCTGCAAATTGAAGTGTTA
30462322 AAGTGCTACT
Statistics
Matches: 174, Mismatches: 25, Indels: 17
0.81 0.12 0.08
Matches are distributed among these distances:
113 4 0.02
114 140 0.80
115 22 0.13
116 6 0.03
117 2 0.01
ACGTcount: A:0.32, C:0.06, G:0.21, T:0.41
Consensus pattern (115 bp):
TAAATGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGCAAATTGAAG
TGTTTAATGCTGCAAATTGAAGTGTTATAAATGCTGTTAATTGATATGTA
Found at i:30462234 original size:137 final size:137
Alignment explanation
Indices: 30461988--30462328 Score: 524
Period size: 137 Copynumber: 2.5 Consensus size: 137
30461978 GTGGATTTGT
* * * * * * *
30461988 AAATTTAAGTGTTTAAATGTTGTAAATTGAAGTGTTTAAGTGCTGCAAATTCAAGTATTT-AGTT
1 AAATTTAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTAAAGTGTTTAAG-T
* *
30462052 GCTGGAAATTGAGATGTTTTATCGCTATAATTGAGGTGTATAAATGTTGTTAATTGATATGTTAA
65 GCTGCAAATTGAGATGTTTTATAGCTATAATTGAGGTGTATAAATGTTGTTAATTGATATGTTAA
30462117 ATTGCTGC
130 ATTGCTGC
* *
30462125 AAATTTAAGTGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAGTG
1 AAATTTAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTAAAGTGTTTAAGTG
* *
30462190 CTGCAAATTGA-AGTGTTTTATAGCTGTAATTGATGTGTATAAATGTTGTTAATTGATATGTTAA
66 CTGCAAATTGAGA-TGTTTTATAGCTATAATTGAGGTGTATAAATGTTGTTAATTGATATGTTAA
30462254 ATTGCTGC
130 ATTGCTGC
*
30462262 AAATTTAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTAAAGTGTTAAAGTG
1 AAATTTAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTAAAGTGTTTAAGTG
30462327 CT
66 CT
30462329 ACTTTCCATT
Statistics
Matches: 187, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
136 1 0.01
137 184 0.98
138 2 0.01
ACGTcount: A:0.32, C:0.06, G:0.21, T:0.41
Consensus pattern (137 bp):
AAATTTAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTAAAGTGTTTAAGTG
CTGCAAATTGAGATGTTTTATAGCTATAATTGAGGTGTATAAATGTTGTTAATTGATATGTTAAA
TTGCTGC
Found at i:30463254 original size:43 final size:43
Alignment explanation
Indices: 30463197--30463489 Score: 302
Period size: 43 Copynumber: 6.8 Consensus size: 43
30463187 CGTTTTCTCC
* * *
30463197 AAAAACGCCACTAAAGGTCATGTTTTTTAGCGGCGTTTTTGGG
1 AAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTTTTGGG
* * * *
30463240 GAAAGCGCCGCTAAAGGT-ATTTTTCTTTAGCAGCGATTTTGGG
1 AAAAGCGCCGCTAAAGGTCA-TGTTCTTTAGCGGCGTTTTTGGG
* * * * *
30463283 GAAAGCGCCGCTAAATGTCTTGTTCTTTAGTGGCGTTTTTGTG
1 AAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTTTTGGG
* * * * * *
30463326 AAAAGCACCGCTAAATGTTATGTTCTTTAGCGGTGTTTTTAGA
1 AAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTTTTGGG
* * *
30463369 AAAAGCACCGCTAAAGGTTATGTTCTTTCGCGGCGTTTTTGGG
1 AAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTTTTGGG
* * *
30463412 GAAAGCGCCACTAAAGGTCATGTTCTTTAGTGGCGTTTGTT-GG
1 AAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTT-TTGGG
* * **
30463455 AAAAACGCCGCTAAAGGTCACGACCTTTAGCGGCG
1 AAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCG
30463490 CTTGTTTTTA
Statistics
Matches: 206, Mismatches: 41, Indels: 6
0.81 0.16 0.02
Matches are distributed among these distances:
42 1 0.00
43 203 0.99
44 2 0.01
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.32
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTTTTGGG
Found at i:30463409 original size:129 final size:129
Alignment explanation
Indices: 30463197--30463489 Score: 356
Period size: 129 Copynumber: 2.3 Consensus size: 129
30463187 CGTTTTCTCC
* * * * ** * *
30463197 AAAAACGCCACTAAAGGTCATGTTTTTTAGCGGCGTTTTTGGGGAAAGCGCCGCTAAAGGTATTT
1 AAAAACACCGCTAAAGGTCATGTTCTTTAGCGGCGTTTTTAGAAAAAGCACCGCTAAAGGTATTG
* * *
30463262 TTCTTTAGCAGCGATTTTGGGGAAAGCGCCGCTAAATGTCTTGTTCTTTAGTGGCGTTT-TTGTG
66 TTCTTTAGCAGCGATTTTGGGGAAAGCGCCACTAAAGGTCATGTTCTTTAGTGGCGTTTGTTG-G
* * * *
30463326 AAAAGCACCGCTAAATGTTATGTTCTTTAGCGGTGTTTTTAGAAAAAGCACCGCTAAAGGT-TAT
1 AAAAACACCGCTAAAGGTCATGTTCTTTAGCGGCGTTTTTAGAAAAAGCACCGCTAAAGGTAT-T
* * *
30463390 GTTCTTTCGCGGCGTTTTTGGGGAAAGCGCCACTAAAGGTCATGTTCTTTAGTGGCGTTTGTTGG
65 GTTCTTTAGCAGCGATTTTGGGGAAAGCGCCACTAAAGGTCATGTTCTTTAGTGGCGTTTGTTGG
* * **
30463455 AAAAACGCCGCTAAAGGTCACGACCTTTAGCGGCG
1 AAAAACACCGCTAAAGGTCATGTTCTTTAGCGGCG
30463490 CTTGTTTTTA
Statistics
Matches: 136, Mismatches: 26, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
128 1 0.01
129 132 0.97
130 3 0.02
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.32
Consensus pattern (129 bp):
AAAAACACCGCTAAAGGTCATGTTCTTTAGCGGCGTTTTTAGAAAAAGCACCGCTAAAGGTATTG
TTCTTTAGCAGCGATTTTGGGGAAAGCGCCACTAAAGGTCATGTTCTTTAGTGGCGTTTGTTGG
Found at i:30463495 original size:43 final size:44
Alignment explanation
Indices: 30463417--30463509 Score: 107
Period size: 43 Copynumber: 2.1 Consensus size: 44
30463407 TTGGGGAAAG
* * ** * *
30463417 CGCCACTAAAGGTCATGTTCTTTAGTGGCGTTTG-TTGGAAAAA
1 CGCCGCTAAAGGTCACGACCTTTAGCGGCGCTTGTTTGGAAAAA
**
30463460 CGCCGCTAAAGGTCACGACCTTTAGCGGCGCTTGTTTTTAAAAA
1 CGCCGCTAAAGGTCACGACCTTTAGCGGCGCTTGTTTGGAAAAA
30463504 CGCCGC
1 CGCCGC
30463510 AAATGTTAGC
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
43 28 0.68
44 13 0.32
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.28
Consensus pattern (44 bp):
CGCCGCTAAAGGTCACGACCTTTAGCGGCGCTTGTTTGGAAAAA
Found at i:30481026 original size:15 final size:15
Alignment explanation
Indices: 30481006--30481038 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
30480996 GCTCTAAAGG
30481006 CATTAATGTTCGAAA
1 CATTAATGTTCGAAA
30481021 CATTAATGTTCGAAA
1 CATTAATGTTCGAAA
30481036 CAT
1 CAT
30481039 AATAACTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.33
Consensus pattern (15 bp):
CATTAATGTTCGAAA
Found at i:30492572 original size:33 final size:33
Alignment explanation
Indices: 30492523--30492588 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
30492513 TCCTCAAGGT
* *
30492523 TATTTCGACATCGTAAGCAAAGTTAGGATGGTG
1 TATTTCAACATCGTAAGAAAAGTTAGGATGGTG
* *
30492556 TATTTCAACATTGTAAGAAAATTTAGGATGGTG
1 TATTTCAACATCGTAAGAAAAGTTAGGATGGTG
30492589 GAAGCCTCAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.33, C:0.09, G:0.24, T:0.33
Consensus pattern (33 bp):
TATTTCAACATCGTAAGAAAAGTTAGGATGGTG
Found at i:30503679 original size:27 final size:25
Alignment explanation
Indices: 30503649--30503714 Score: 78
Period size: 27 Copynumber: 2.6 Consensus size: 25
30503639 TCTGACCCAA
30503649 AGCTCGTGTGAGCAAACCCATTTTCAC
1 AGCTCGTGTGAGCAAACCCA-TTT-AC
* * * *
30503676 AGCTCATGTGAGCATACCGATTTAT
1 AGCTCGTGTGAGCAAACCCATTTAC
30503701 AGCTCGTGTGAGCA
1 AGCTCGTGTGAGCA
30503715 TACATGCATA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
25 14 0.41
26 3 0.09
27 17 0.50
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (25 bp):
AGCTCGTGTGAGCAAACCCATTTAC
Found at i:30503710 original size:25 final size:27
Alignment explanation
Indices: 30503649--30503717 Score: 88
Period size: 25 Copynumber: 2.6 Consensus size: 27
30503639 TCTGACCCAA
*
30503649 AGCTCGTGTGAGCAAACCCATTTTCAC
1 AGCTCGTGTGAGCATACCCATTTTCAC
* * *
30503676 AGCTCATGTGAGCATACCGA-TTT-AT
1 AGCTCGTGTGAGCATACCCATTTTCAC
30503701 AGCTCGTGTGAGCATAC
1 AGCTCGTGTGAGCATAC
30503718 ATGCATAGGA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
25 17 0.46
26 3 0.08
27 17 0.46
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.28
Consensus pattern (27 bp):
AGCTCGTGTGAGCATACCCATTTTCAC
Found at i:30506085 original size:11 final size:11
Alignment explanation
Indices: 30506053--30506111 Score: 50
Period size: 11 Copynumber: 5.2 Consensus size: 11
30506043 AGAAAAGAGA
*
30506053 GAATGATGAAT
1 GAATGAGGAAT
30506064 G-ATGA-GAAT
1 GAATGAGGAAT
30506073 GAATGAGGAAT
1 GAATGAGGAAT
*
30506084 GATTGAGGGATGAT
1 GAATGA-GGA--AT
30506098 GAATGAAGGAAT
1 GAATG-AGGAAT
30506110 GA
1 GA
30506112 GAGGGTGCTA
Statistics
Matches: 40, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
9 5 0.12
10 8 0.20
11 10 0.25
12 7 0.17
14 9 0.22
15 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.36, T:0.22
Consensus pattern (11 bp):
GAATGAGGAAT
Found at i:30506243 original size:15 final size:16
Alignment explanation
Indices: 30506219--30506249 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
30506209 GCTTAGTGGC
30506219 TTTTGACTTGATTTTT
1 TTTTGACTTGATTTTT
30506235 TTTTG-CTTGATTTTT
1 TTTTGACTTGATTTTT
30506250 AAGCAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.10, C:0.06, G:0.13, T:0.71
Consensus pattern (16 bp):
TTTTGACTTGATTTTT
Found at i:30525845 original size:19 final size:18
Alignment explanation
Indices: 30525791--30525845 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 18
30525781 AGATACAATA
*
30525791 TTTAATTTTTTATTTTTATT
1 TTTAA-TTTTTA-ATTTATT
*
30525811 TTTAATTCTTTGATTTATT
1 TTTAATT-TTTAATTTATT
30525830 TTTAATTTTTCAATTT
1 TTTAATTTTT-AATTT
30525846 GTTTATGACC
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
18 3 0.10
19 19 0.63
20 8 0.27
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.73
Consensus pattern (18 bp):
TTTAATTTTTAATTTATT
Found at i:30527853 original size:16 final size:17
Alignment explanation
Indices: 30527826--30527861 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
30527816 AGAGAGGTGA
30527826 GAGAGAGGATGAGAGAT
1 GAGAGAGGATGAGAGAT
*
30527843 GAGAG-GGATGAGGGAT
1 GAGAGAGGATGAGAGAT
30527859 GAG
1 GAG
30527862 GGATAAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.36, C:0.00, G:0.53, T:0.11
Consensus pattern (17 bp):
GAGAGAGGATGAGAGAT
Found at i:30531939 original size:19 final size:20
Alignment explanation
Indices: 30531883--30531939 Score: 59
Period size: 19 Copynumber: 3.0 Consensus size: 20
30531873 ACCCCCTTTA
*
30531883 TTAACATAA-AATTTAAAAC
1 TTAACAAAATAATTTAAAAC
30531902 TTAACAAAATAATTT-AAAC
1 TTAACAAAATAATTTAAAAC
*
30531921 -TAGA-AAAATATTTTAAAAC
1 TTA-ACAAAATAATTTAAAAC
30531940 CTAATTAGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
18 11 0.33
19 17 0.52
20 5 0.15
ACGTcount: A:0.58, C:0.09, G:0.02, T:0.32
Consensus pattern (20 bp):
TTAACAAAATAATTTAAAAC
Found at i:30546304 original size:101 final size:102
Alignment explanation
Indices: 30546168--30546352 Score: 257
Period size: 101 Copynumber: 1.8 Consensus size: 102
30546158 AAAGTGATGG
* * *
30546168 TCACATGTGTAGTACTATGTGCAGGCCACTACGTGTACCAGA-A-TGATAGGTCGCACGTGTAGT
1 TCACATGTGTAGTACTATGTGCAGGCCACCACGTGTACCAGACAGTGAT-GGTCACACATGTAGT
30546231 ACTATGTGCAGGCAACTATGCGTACCAGATAGCTTCGA
65 ACTATGTGCAGGCAACTATGCGTACCAGATAGCTTCGA
* * *** *
30546269 TCACGTGTGTAGTACTATGTGCAGGCTACCACGTGTATTGGACAGTGATGGTCACATATGTAGTA
1 TCACATGTGTAGTACTATGTGCAGGCCACCACGTGTACCAGACAGTGATGGTCACACATGTAGTA
*
30546334 CTATGTGCAGGCTACTATG
66 CTATGTGCAGGCAACTATG
30546353 TGAACCGGTA
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
101 36 0.50
102 32 0.44
103 4 0.06
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.28
Consensus pattern (102 bp):
TCACATGTGTAGTACTATGTGCAGGCCACCACGTGTACCAGACAGTGATGGTCACACATGTAGTA
CTATGTGCAGGCAACTATGCGTACCAGATAGCTTCGA
Found at i:30546437 original size:46 final size:43
Alignment explanation
Indices: 30546356--30546454 Score: 110
Period size: 46 Copynumber: 2.2 Consensus size: 43
30546346 TACTATGTGA
* *
30546356 ACCGGTATCATTAATTATAAGGTGGTTGCTATGTGCTG-ATCCC
1 ACCGGTATCATTAATTAAAAGGTGGTTACTATGTGCTGAAT-CC
* *
30546399 ACCGGATATCATTGATTACAAAGGGTGGTTACTGTGTGCTGAATCC
1 ACCGG-TATCATTAATTA-AAA-GGTGGTTACTATGTGCTGAATCC
30546445 ACCGTGTATC
1 ACCG-GTATC
30546455 TGTTATTATT
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
43 5 0.11
44 11 0.23
45 2 0.04
46 26 0.55
47 3 0.06
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.32
Consensus pattern (43 bp):
ACCGGTATCATTAATTAAAAGGTGGTTACTATGTGCTGAATCC
Found at i:30546597 original size:16 final size:16
Alignment explanation
Indices: 30546576--30546607 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
30546566 TGATTGAAAG
*
30546576 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
30546592 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
30546608 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:30555985 original size:10 final size:10
Alignment explanation
Indices: 30555970--30555999 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
30555960 AACCTTGGTC
30555970 AAAACATTAA
1 AAAACATTAA
30555980 AAAACATTAA
1 AAAACATTAA
30555990 AAAACATTAA
1 AAAACATTAA
30556000 CCACATGGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.70, C:0.10, G:0.00, T:0.20
Consensus pattern (10 bp):
AAAACATTAA
Found at i:30559643 original size:20 final size:20
Alignment explanation
Indices: 30559611--30559666 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
30559601 AGACGATGAA
*
30559611 CCATTCCATTTACTTACTTT
1 CCATTCAATTTACTTACTTT
30559631 CCACTT-AATTTACTTACTTT
1 CCA-TTCAATTTACTTACTTT
*
30559651 CCATTCCATTTACTTA
1 CCATTCAATTTACTTA
30559667 GCATAAGTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 2 0.06
20 28 0.88
21 2 0.06
ACGTcount: A:0.23, C:0.29, G:0.00, T:0.48
Consensus pattern (20 bp):
CCATTCAATTTACTTACTTT
Found at i:30562202 original size:43 final size:43
Alignment explanation
Indices: 30562105--30562253 Score: 180
Period size: 43 Copynumber: 3.5 Consensus size: 43
30562095 AGTGGTATAG
* * *
30562105 GGAATCAGCACATAGCAAACCCTTTCACAATCAAAGATACGGT
1 GGAATCAGCACTTAGCAACCCCTTTCACAATCAAATATACGGT
30562148 GGAATCAGCACTTAGCAACCCCTTTCACAATCAAATATACGGT
1 GGAATCAGCACTTAGCAACCCCTTTCACAATCAAATATACGGT
* * * *
30562191 GGAATCAGCACTTAACAACCACCTTT-AGAATC-AATAATTC-AT
1 GGAATCAGCACTTAGCAACC-CCTTTCACAATCAAAT-ATACGGT
30562233 GGAATC-GACACTTAGCAACCC
1 GGAATCAG-CACTTAGCAACCC
30562254 TTCGGGGAAT
Statistics
Matches: 95, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
41 2 0.02
42 21 0.22
43 67 0.71
44 5 0.05
ACGTcount: A:0.38, C:0.27, G:0.14, T:0.21
Consensus pattern (43 bp):
GGAATCAGCACTTAGCAACCCCTTTCACAATCAAATATACGGT
Found at i:30562653 original size:30 final size:30
Alignment explanation
Indices: 30562619--30562676 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
30562609 CCTTAACTCA
30562619 AACTTTTGCAAAATTACAATTTTGCCCCTC
1 AACTTTTGCAAAATTACAATTTTGCCCCTC
* * * *
30562649 AACTTTTGCATATTTACACTTTTTCCCC
1 AACTTTTGCAAAATTACAATTTTGCCCC
30562677 AAAGCTCAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.05, T:0.41
Consensus pattern (30 bp):
AACTTTTGCAAAATTACAATTTTGCCCCTC
Found at i:30569372 original size:48 final size:47
Alignment explanation
Indices: 30569266--30569372 Score: 105
Period size: 48 Copynumber: 2.2 Consensus size: 47
30569256 AAAACTCTTT
** *
30569266 TTTTCATTTTCGTCACTCGTTTCTTTTTGTTTCTCTTTTGAATCACTC
1 TTTTCATTTTTATCACTCG-TTCTTTTTGTTTCTCTTTTCAATCACTC
30569314 TCTCTT--TTTTTATCACTCG-TCTTTTTGCTTTTCTTCTTTTCAA-CACTC
1 T-T-TTCATTTTTATCACTCGTTCTTTTTG--TTTC-TCTTTTCAATCACTC
30569362 TTTTCATTTTT
1 TTTTCATTTTT
30569373 TTGCTCTCGC
Statistics
Matches: 49, Mismatches: 3, Indels: 14
0.74 0.05 0.21
Matches are distributed among these distances:
46 10 0.20
47 1 0.02
48 27 0.55
49 9 0.18
50 2 0.04
ACGTcount: A:0.10, C:0.23, G:0.06, T:0.61
Consensus pattern (47 bp):
TTTTCATTTTTATCACTCGTTCTTTTTGTTTCTCTTTTCAATCACTC
Found at i:30569919 original size:27 final size:27
Alignment explanation
Indices: 30569889--30569944 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
30569879 TCTCTCCACT
*
30569889 TTCGGCTTGTTCAACGTCCTCCTTATC
1 TTCGGCTTGTTCAACGGCCTCCTTATC
* * *
30569916 TTCGGTTTGTTCAATGGCCTCCTTCTC
1 TTCGGCTTGTTCAACGGCCTCCTTATC
30569943 TT
1 TT
30569945 GTTCACTTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.09, C:0.30, G:0.16, T:0.45
Consensus pattern (27 bp):
TTCGGCTTGTTCAACGGCCTCCTTATC
Found at i:30571561 original size:13 final size:14
Alignment explanation
Indices: 30571542--30571581 Score: 73
Period size: 13 Copynumber: 2.9 Consensus size: 14
30571532 TTTTTACACA
30571542 AACTTTTTTTTTCG
1 AACTTTTTTTTTCG
30571556 AA-TTTTTTTTTCG
1 AACTTTTTTTTTCG
30571569 AACTTTTTTTTTC
1 AACTTTTTTTTTC
30571582 AATACTACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 13 0.52
14 12 0.48
ACGTcount: A:0.15, C:0.12, G:0.05, T:0.68
Consensus pattern (14 bp):
AACTTTTTTTTTCG
Found at i:30590074 original size:107 final size:107
Alignment explanation
Indices: 30589901--30590205 Score: 466
Period size: 107 Copynumber: 2.9 Consensus size: 107
30589891 TTTTAAGAGG
* *
30589901 ATATTTGGCTATTTAGTCAAACAAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGATTT
1 ATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGATTT
*
30589966 TCCAAACGCGAAGTATTGCCTTATTTTAAAAGTTTAAAAAGA
66 TCCAAACGCGAAATATTGCCTTATTTTAAAAGTTTAAAAAGA
* * * * *
30590008 ATATTTGGCTATTTGGTCAAACGAGAAGTCGAAACCCAACACATTGGGGCACATTTCCTCGATTT
1 ATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGATTT
* *
30590073 TCCAAACGCGAAATACTGCCTTATTTTAAAAGTTTAAAAAGG
66 TCCAAACGCGAAATATTGCCTTATTTTAAAAGTTTAAAAAGA
* * * * *
30590115 GTATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCGCGTTTTCTTGATTT
1 ATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGATTT
*
30590180 TCCAAACGCGAAATATTACCTTATTT
66 TCCAAACGCGAAATATTGCCTTATTT
30590206 AGAAAAAACT
Statistics
Matches: 176, Mismatches: 22, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
107 176 1.00
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.30
Consensus pattern (107 bp):
ATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGATTT
TCCAAACGCGAAATATTGCCTTATTTTAAAAGTTTAAAAAGA
Found at i:30592430 original size:50 final size:50
Alignment explanation
Indices: 30592284--30593480 Score: 324
Period size: 50 Copynumber: 24.2 Consensus size: 50
30592274 GGGAGAAGTG
* **
30592284 AGATTCACCGTTGTGGCTTCAATCTCTTT-AATTGCAATGTTGGGGAA-CA
1 AGATTCGCCGTTGTGGCTTCAATCT-TTTAAATTGCAATGTCAGGGAAGCA
* * * ** *** * **** * *
30592333 AGATTCACTGTTGTAGCTTCAATCAGTCCCACTGCACCACCAAGGAAGTA
1 AGATTCGCCGTTGTGGCTTCAATCTTTTAAATTGCAATGTCAGGGAAGCA
* * * *
30592383 AGATTCACCGTTGCGGCTTCAATATTTTAAATTGCAATGTCGGGGAAGCA
1 AGATTCGCCGTTGTGGCTTCAATCTTTTAAATTGCAATGTCAGGGAAGCA
* * * * * ***** * **** * *
30592433 AGATTTGTCGTCGTAGCTTTAATCTGCCCTACTGCACCACCAAGGAAGTA
1 AGATTCGCCGTTGTGGCTTCAATCTTTTAAATTGCAATGTCAGGGAAGCA
* * * *
30592483 AGATTCACCGTTGCGGCTTCAATATTTTAAATTGCAATGTCGGGGAAGCA
1 AGATTCGCCGTTGTGGCTTCAATCTTTTAAATTGCAATGTCAGGGAAGCA
* * * * * * * * * * **
30592533 AGATTCGCCGTCGTAGCTTTAAT-TTGCTACACTGTACTGCCAGAGAAGTG
1 AGATTCGCCGTTGTGGCTTCAATCTT-TTAAATTGCAATGTCAGGGAAGCA
* *
30592583 AGATTTGCCGTTGTGGCTTCAATCTCTTT-AATTGCAATGTCGGGGAA-CA
1 AGATTCGCCGTTGTGGCTTCAATCT-TTTAAATTGCAATGTCAGGGAAGCA
* ** ** * * * * *
30592632 AGATTCGCCGTTGTAGCTTCAATCTGATCCACTGC-ATCGCCAAGAAAGTA
1 AGATTCGCCGTTGTGGCTTCAATCTTTTAAATTGCAAT-GTCAGGGAAGCA
* * * *
30592682 AGATTCGCCATTGCGGCTTCAATCTTTTAAATTGCAATATTAGGGAAGCA
1 AGATTCGCCGTTGTGGCTTCAATCTTTTAAATTGCAATGTCAGGGAAGCA
* * * * ** ** * * * ** * **
30592732 AGATTCACCGTCGTAGCTTTAATCTGCTGCACTGTACTACCAGAGAAGTG
1 AGATTCGCCGTTGTGGCTTCAATCTTTTAAATTGCAATGTCAGGGAAGCA
* * *
30592782 AGCTTCACCGTTGTGGC-T---TC-----AATTGCAATGTCGGGGAA-CA
1 AGATTCGCCGTTGTGGCTTCAATCTTTTAAATTGCAATGTCAGGGAAGCA
* * * * ** ** * * * *
30592822 AGATTTGCCGTCGTAGCTTTAATCTGATCCACTGC-ATCGCCAAGGAAGTA
1 AGATTCGCCGTTGTGGCTTCAATCTTTTAAATTGCAAT-GTCAGGGAAGCA
* * *
30592872 AGATTCGCCGTTGCGGCTTCAATCTCTTAAATTGCAATATCAGGGAAGCA
1 AGATTCGCCGTTGTGGCTTCAATCTTTTAAATTGCAATGTCAGGGAAGCA
* * * ** ** * * * * * **
30592922 AGATTCGCCGTCGTAGCTTTAATCTGCTGCACTGTACTGCCAGAGAAGTG
1 AGATTCGCCGTTGTGGCTTCAATCTTTTAAATTGCAATGTCAGGGAAGCA
* *
30592972 AGATTCGCCGTTGTGGCTTCAATCTCTTT-AATTGCAATGTCGGGGAA-TA
1 AGATTCGCCGTTGTGGCTTCAATCT-TTTAAATTGCAATGTCAGGGAAGCA
* * ** ** * * * * *
30593021 AGATTCGCCATTGTAGCTTCAATCTGCTCCACTGC-ATCGCCAAGAAAGTA
1 AGATTCGCCGTTGTGGCTTCAATCTTTTAAATTGCAAT-GTCAGGGAAGCA
* ** * * * *
30593071 AGATTCACCGTTACGACTTCAATCTTTTAAATTGCAATATCAAGGAAGAA
1 AGATTCGCCGTTGTGGCTTCAATCTTTTAAATTGCAATGTCAGGGAAGCA
* * * ** * * * * * ** **
30593121 AGATTCGCCGTCGTAGCTTTAATCTGCTACACTGTACTGCCAGAAAAGTG
1 AGATTCGCCGTTGTGGCTTCAATCTTTTAAATTGCAATGTCAGGGAAGCA
* * ** ** * * * * *
30593171 AGATTCGTCGTTGTAGCTTCAATCTGATCCACTGC-ATCATCATGAAAGTA
1 AGATTCGCCGTTGTGGCTTCAATCTTTTAAATTGCAAT-GTCAGGGAAGCA
* ** * *
30593221 AGATTCACCGTTGCAGCTTCAATCTTTTTAATTGCAATATCAGGGAAGCA
1 AGATTCGCCGTTGTGGCTTCAATCTTTTAAATTGCAATGTCAGGGAAGCA
* * * ** ** * * * **
30593271 AGATTCGCCGTCGTAGCTTTAATCTGCTGCACTGTACTG-CAAGGGAAGTG
1 AGATTCGCCGTTGTGGCTTCAATCTTTTAAATTGCAATGTC-AGGGAAGCA
* *
30593321 AGATTCGCCGTTGTGGCTTTAATCTCTTT-AATTACAATGTC-GAGGAA-CA
1 AGATTCGCCGTTGTGGCTTCAATCT-TTTAAATTGCAATGTCAG-GGAAGCA
* ** ** * * * * *
30593370 AGATTCGCCGTTGTAGCTTCAATCTGATCCACTGC-ATCGCCAAGAAAGTA
1 AGATTCGCCGTTGTGGCTTCAATCTTTTAAATTGCAAT-GTCAGGGAAGCA
* *
30593420 AGATTCGCCGTTGCGGCTTCAATCTTTTTAAA-TGCAATATCAGGGAAGCA
1 AGATTCGCCGTTGTGGCTTCAATC-TTTTAAATTGCAATGTCAGGGAAGCA
*
30593470 AGATTTGCCGT
1 AGATTCGCCGT
30593481 CGTAGCTTTA
Statistics
Matches: 781, Mismatches: 329, Indels: 75
0.66 0.28 0.06
Matches are distributed among these distances:
40 12 0.02
41 11 0.01
44 2 0.00
46 2 0.00
48 12 0.02
49 143 0.18
50 580 0.74
51 18 0.02
52 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (50 bp):
AGATTCGCCGTTGTGGCTTCAATCTTTTAAATTGCAATGTCAGGGAAGCA
Found at i:30592487 original size:100 final size:100
Alignment explanation
Indices: 30592278--30593154 Score: 941
Period size: 100 Copynumber: 8.9 Consensus size: 100
30592268 TACTTAGGGA
* * * *
30592278 GAAGTGAGATTCACCGTTGTGGCTTCAATCTCTTT-AATTGCAATGTTGGGGAA-CAAGATTCAC
1 GAAGTAAGATTCACCGTTGCGGCTTCAATCT-TTTAAATTGCAATGTCGGGGAAGCAAGATTCGC
* * * * *
30592341 TGTTGTAGCTTCAATCAG-TCCCACTGCACCACCAAG
65 CGTCGTAGCTTTAATCTGCT-CCACTGCACCGCCAAG
* * *
30592377 GAAGTAAGATTCACCGTTGCGGCTTCAATATTTTAAATTGCAATGTCGGGGAAGCAAGATTTGTC
1 GAAGTAAGATTCACCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCC
*
30592442 GTCGTAGCTTTAATCTGC-CCTACTGCACCACCAAG
66 GTCGTAGCTTTAATCTGCTCC-ACTGCACCGCCAAG
*
30592477 GAAGTAAGATTCACCGTTGCGGCTTCAATATTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCC
1 GAAGTAAGATTCACCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCC
* * * *
30592542 GTCGTAGCTTTAATTTGCTACACTGTACTGCC-AG
66 GTCGTAGCTTTAATCTGCTCCACTGCACCGCCAAG
* ** *
30592576 AGAAGTGAGATTTGCCGTTGTGGCTTCAATCTCTTT-AATTGCAATGTCGGGGAA-CAAGATTCG
1 -GAAGTAAGATTCACCGTTGCGGCTTCAATCT-TTTAAATTGCAATGTCGGGGAAGCAAGATTCG
* * * *
30592639 CCGTTGTAGCTTCAATCTGATCCACTGCATCGCCAAG
64 CCGTCGTAGCTTTAATCTGCTCCACTGCACCGCCAAG
* * * * ** *
30592676 AAAGTAAGATTCGCCATTGCGGCTTCAATCTTTTAAATTGCAATATTAGGGAAGCAAGATTCACC
1 GAAGTAAGATTCACCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCC
* * **
30592741 GTCGTAGCTTTAATCTGCTGCACTGTACTACC-AG
66 GTCGTAGCTTTAATCTGCTCCACTGCACCGCCAAG
* * * *
30592775 AGAAGTGAGCTTCACCGTTGTGGC-T---TC-----AATTGCAATGTCGGGGAA-CAAGATTTGC
1 -GAAGTAAGATTCACCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGC
* *
30592830 CGTCGTAGCTTTAATCTGATCCACTGCATCGCCAAG
65 CGTCGTAGCTTTAATCTGCTCCACTGCACCGCCAAG
* * * *
30592866 GAAGTAAGATTCGCCGTTGCGGCTTCAATCTCTTAAATTGCAATATCAGGGAAGCAAGATTCGCC
1 GAAGTAAGATTCACCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCC
* * *
30592931 GTCGTAGCTTTAATCTGCTGCACTGTACTGCC-AG
66 GTCGTAGCTTTAATCTGCTCCACTGCACCGCCAAG
* * * *
30592965 AGAAGTGAGATTCGCCGTTGTGGCTTCAATCTCTTT-AATTGCAATGTCGGGGAA-TAAGATTCG
1 -GAAGTAAGATTCACCGTTGCGGCTTCAATCT-TTTAAATTGCAATGTCGGGGAAGCAAGATTCG
* * * *
30593028 CCATTGTAGCTTCAATCTGCTCCACTGCATCGCCAAG
64 CCGTCGTAGCTTTAATCTGCTCCACTGCACCGCCAAG
* * * * ** *
30593065 AAAGTAAGATTCACCGTTACGACTTCAATCTTTTAAATTGCAATATCAAGGAAGAAAGATTCGCC
1 GAAGTAAGATTCACCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCC
*
30593130 GTCGTAGCTTTAATCTGCTACACTG
66 GTCGTAGCTTTAATCTGCTCCACTG
30593155 TACTGCCAGA
Statistics
Matches: 647, Mismatches: 104, Indels: 53
0.80 0.13 0.07
Matches are distributed among these distances:
90 54 0.08
91 18 0.03
94 2 0.00
96 2 0.00
98 9 0.01
99 221 0.34
100 335 0.52
101 6 0.01
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (100 bp):
GAAGTAAGATTCACCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCC
GTCGTAGCTTTAATCTGCTCCACTGCACCGCCAAG
Found at i:30592650 original size:199 final size:199
Alignment explanation
Indices: 30592278--30593195 Score: 1157
Period size: 199 Copynumber: 4.7 Consensus size: 199
30592268 TACTTAGGGA
* * * ** *
30592278 GAAGTGAGATTCACCGTTGTGGCTTCAATCTCTTT-AATTGCAATGTTGGGGAA-CAAGATTCAC
1 GAAGTAAGATTCACCGTTGCGGCTTCAATCT-TTTAAATTGCAATATCAGGGAAGCAAGATTCGC
* * * * * * ** * * *
30592341 TGTTGTAGCTTCAATCAG-TCCCACTGCACCACCA-AGGAAGTAAGATTCACCGTTGCGGCTTCA
65 CGTCGTAGCTTTAATCTGCT-ACACTGTACTGCCAGA-GAAGTGAGATTCGCCGTTGTGGCTTCA
* * * *
30592404 ATAT-TTTAAATTGCAATGTCGGGGAAGCAAGATTTGTCGTCGTAGCTTTAATCTG-CCCTACTG
128 ATCTCTTT-AATTGCAATGTCGGGGAA-CAAGATTCGCCGTCGTAGCTTCAATCTGACCC-ACTG
* *
30592467 CACCACCAAG
190 CATCGCCAAG
* * *
30592477 GAAGTAAGATTCACCGTTGCGGCTTCAATATTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCC
1 GAAGTAAGATTCACCGTTGCGGCTTCAATCTTTTAAATTGCAATATCAGGGAAGCAAGATTCGCC
* *
30592542 GTCGTAGCTTTAATTTGCTACACTGTACTGCCAGAGAAGTGAGATTTGCCGTTGTGGCTTCAATC
66 GTCGTAGCTTTAATCTGCTACACTGTACTGCCAGAGAAGTGAGATTCGCCGTTGTGGCTTCAATC
* *
30592607 TCTTTAATTGCAATGTCGGGGAACAAGATTCGCCGTTGTAGCTTCAATCTGATCCACTGCATCGC
131 TCTTTAATTGCAATGTCGGGGAACAAGATTCGCCGTCGTAGCTTCAATCTGACCCACTGCATCGC
30592672 CAAG
196 CAAG
* * * * *
30592676 AAAGTAAGATTCGCCATTGCGGCTTCAATCTTTTAAATTGCAATATTAGGGAAGCAAGATTCACC
1 GAAGTAAGATTCACCGTTGCGGCTTCAATCTTTTAAATTGCAATATCAGGGAAGCAAGATTCGCC
* * * *
30592741 GTCGTAGCTTTAATCTGCTGCACTGTACTACCAGAGAAGTGAGCTTCACCGTTGTGG---C--T-
66 GTCGTAGCTTTAATCTGCTACACTGTACTGCCAGAGAAGTGAGATTCGCCGTTGTGGCTTCAATC
* * *
30592800 TC---AATTGCAATGTCGGGGAACAAGATTTGCCGTCGTAGCTTTAATCTGATCCACTGCATCGC
131 TCTTTAATTGCAATGTCGGGGAACAAGATTCGCCGTCGTAGCTTCAATCTGACCCACTGCATCGC
30592862 CAAG
196 CAAG
* *
30592866 GAAGTAAGATTCGCCGTTGCGGCTTCAATCTCTTAAATTGCAATATCAGGGAAGCAAGATTCGCC
1 GAAGTAAGATTCACCGTTGCGGCTTCAATCTTTTAAATTGCAATATCAGGGAAGCAAGATTCGCC
*
30592931 GTCGTAGCTTTAATCTGCTGCACTGTACTGCCAGAGAAGTGAGATTCGCCGTTGTGGCTTCAATC
66 GTCGTAGCTTTAATCTGCTACACTGTACTGCCAGAGAAGTGAGATTCGCCGTTGTGGCTTCAATC
* * *
30592996 TCTTTAATTGCAATGTCGGGGAATAAGATTCGCCATTGTAGCTTCAATCTG-CTCCACTGCATCG
131 TCTTTAATTGCAATGTCGGGGAACAAGATTCGCCGTCGTAGCTTCAATCTGAC-CCACTGCATCG
30593060 CCAAG
195 CCAAG
* * * * *
30593065 AAAGTAAGATTCACCGTTACGACTTCAATCTTTTAAATTGCAATATCAAGGAAGAAAGATTCGCC
1 GAAGTAAGATTCACCGTTGCGGCTTCAATCTTTTAAATTGCAATATCAGGGAAGCAAGATTCGCC
* * *
30593130 GTCGTAGCTTTAATCTGCTACACTGTACTGCCAGAAAAGTGAGATTCGTCGTTGTAGCTTCAATC
66 GTCGTAGCTTTAATCTGCTACACTGTACTGCCAGAGAAGTGAGATTCGCCGTTGTGGCTTCAATC
30593195 T
131 T
30593196 GATCCACTGC
Statistics
Matches: 635, Mismatches: 68, Indels: 32
0.86 0.09 0.04
Matches are distributed among these distances:
190 175 0.28
193 3 0.00
194 1 0.00
195 1 0.00
196 3 0.00
198 3 0.00
199 366 0.58
200 78 0.12
201 5 0.01
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (199 bp):
GAAGTAAGATTCACCGTTGCGGCTTCAATCTTTTAAATTGCAATATCAGGGAAGCAAGATTCGCC
GTCGTAGCTTTAATCTGCTACACTGTACTGCCAGAGAAGTGAGATTCGCCGTTGTGGCTTCAATC
TCTTTAATTGCAATGTCGGGGAACAAGATTCGCCGTCGTAGCTTCAATCTGACCCACTGCATCGC
CAAG
Found at i:30593148 original size:389 final size:390
Alignment explanation
Indices: 30592412--30593193 Score: 1271
Period size: 389 Copynumber: 2.0 Consensus size: 390
30592402 CAATATTTTA
*
30592412 AATTGCAATGTCGGGGAAGCAAGATTTGTCGTCGTAGCTTTAATCTGCCCTACTGCACCACCAAG
1 AATTGCAATGTCGGGGAAGCAAGATTTGCCGTCGTAGCTTTAATCTGCCCTACTGCACCACCAAG
* * *
30592477 GAAGTAAGATTCACCGTTGCGGCTTCAATATTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCC
66 GAAGTAAGATTCACCGTTGCGGCTTCAATATCTTAAATTGCAATATCAGGGAAGCAAGATTCGCC
* *
30592542 GTCGTAGCTTTAATTTGCTACACTGTACTGCCAGAGAAGTGAGATTTGCCGTTGTGGCTTCAATC
131 GTCGTAGCTTTAATCTGCTACACTGTACTGCCAGAGAAGTGAGATTCGCCGTTGTGGCTTCAATC
*
30592607 TCTTTAATTGCAATGTCGGGGAACAAGATTCGCCGTTGTAGCTTCAATCTGATCCACTGCATCGC
196 TCTTTAATTGCAATGTCGGGGAACAAGATTCGCCATTGTAGCTTCAATCTGATCCACTGCATCGC
* * * * * *
30592672 CAAGAAAGTAAGATTCGCCATTGCGGCTTCAATCTTTTAAATTGCAATATTAGGGAAGCAAGATT
261 CAAGAAAGTAAGATTCACCATTACGACTTCAATCTTTTAAATTGCAATATCAAGGAAGAAAGATT
* * * *
30592737 CACCGTCGTAGCTTTAATCTGCTGCACTGTACTACCAGAGAAGTGAGCTTCACCGTTGTGGCTTC
326 CACCGTCGTAGCTTTAATCTGCTACACTGTACTACCAGAAAAGTGAGATTCACCGTTGTAGCTTC
* * *
30592802 AATTGCAATGTCGGGGAA-CAAGATTTGCCGTCGTAGCTTTAATCTGATCC-ACTGCATCGCCAA
1 AATTGCAATGTCGGGGAAGCAAGATTTGCCGTCGTAGCTTTAATCTG-CCCTACTGCACCACCAA
* *
30592865 GGAAGTAAGATTCGCCGTTGCGGCTTCAATCTCTTAAATTGCAATATCAGGGAAGCAAGATTCGC
65 GGAAGTAAGATTCACCGTTGCGGCTTCAATATCTTAAATTGCAATATCAGGGAAGCAAGATTCGC
*
30592930 CGTCGTAGCTTTAATCTGCTGCACTGTACTGCCAGAGAAGTGAGATTCGCCGTTGTGGCTTCAAT
130 CGTCGTAGCTTTAATCTGCTACACTGTACTGCCAGAGAAGTGAGATTCGCCGTTGTGGCTTCAAT
* *
30592995 CTCTTTAATTGCAATGTCGGGGAATAAGATTCGCCATTGTAGCTTCAATCTGCTCCACTGCATCG
195 CTCTTTAATTGCAATGTCGGGGAACAAGATTCGCCATTGTAGCTTCAATCTGATCCACTGCATCG
*
30593060 CCAAGAAAGTAAGATTCACCGTTACGACTTCAATCTTTTAAATTGCAATATCAAGGAAGAAAGAT
260 CCAAGAAAGTAAGATTCACCATTACGACTTCAATCTTTTAAATTGCAATATCAAGGAAGAAAGAT
* * **
30593125 TCGCCGTCGTAGCTTTAATCTGCTACACTGTACTGCCAGAAAAGTGAGATTCGTCGTTGTAGCTT
325 TCACCGTCGTAGCTTTAATCTGCTACACTGTACTACCAGAAAAGTGAGATTCACCGTTGTAGCTT
30593190 C
390 C
30593191 AAT
1 AAT
30593194 CTGATCCACT
Statistics
Matches: 361, Mismatches: 30, Indels: 3
0.92 0.08 0.01
Matches are distributed among these distances:
389 341 0.94
390 20 0.06
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (390 bp):
AATTGCAATGTCGGGGAAGCAAGATTTGCCGTCGTAGCTTTAATCTGCCCTACTGCACCACCAAG
GAAGTAAGATTCACCGTTGCGGCTTCAATATCTTAAATTGCAATATCAGGGAAGCAAGATTCGCC
GTCGTAGCTTTAATCTGCTACACTGTACTGCCAGAGAAGTGAGATTCGCCGTTGTGGCTTCAATC
TCTTTAATTGCAATGTCGGGGAACAAGATTCGCCATTGTAGCTTCAATCTGATCCACTGCATCGC
CAAGAAAGTAAGATTCACCATTACGACTTCAATCTTTTAAATTGCAATATCAAGGAAGAAAGATT
CACCGTCGTAGCTTTAATCTGCTACACTGTACTACCAGAAAAGTGAGATTCACCGTTGTAGCTTC
Found at i:30593169 original size:100 final size:100
Alignment explanation
Indices: 30592802--30593195 Score: 442
Period size: 100 Copynumber: 4.0 Consensus size: 100
30592792 TTGTGGCTTC
* * * * *
30592802 AATTGCAATGTCGGGGAA-CAAGATTTGCCGTCGTAGCTTTAATCTGATCCACTGCATCGCCAAG
1 AATTGCAATATCAGGGAAGAAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGCATCGCCAAG
* *
30592866 GAAGTAAGATTCGCCGTTGCGGCTTCAATCTCTTA
66 AAAGTAAGATTCGCCGTTGCGGCTTCAATCTTTTA
* * *
30592901 AATTGCAATATCAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTGCACTGTA-CTGCC-A
1 AATTGCAATATCAGGGAAGAAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGCATC-GCCAA
* *
30592964 GAGAAGTGAGATTCGCCGTTGTGGCTTCAATCTCTTT-
65 GA-AAGTAAGATTCGCCGTTGCGGCTTCAATCT-TTTA
* * * * * *
30593001 AATTGCAATGTCGGGGAA-TAAGATTCGCCATTGTAGCTTCAATCTGCTCCACTGCATCGCCAAG
1 AATTGCAATATCAGGGAAGAAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGCATCGCCAAG
* * *
30593065 AAAGTAAGATTCACCGTTACGACTTCAATCTTTTA
66 AAAGTAAGATTCGCCGTTGCGGCTTCAATCTTTTA
* * *
30593100 AATTGCAATATCAAGGAAGAAAGATTCGCCGTCGTAGCTTTAATCTGCTACACTGTA-CTGCC-A
1 AATTGCAATATCAGGGAAGAAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGCATC-GCCAA
* * **
30593163 GAAAAGTGAGATTCGTCGTTGTAGCTTCAATCT
65 G-AAAGTAAGATTCGCCGTTGCGGCTTCAATCT
30593196 GATCCACTGC
Statistics
Matches: 246, Mismatches: 39, Indels: 19
0.81 0.13 0.06
Matches are distributed among these distances:
98 3 0.01
99 97 0.39
100 144 0.59
101 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (100 bp):
AATTGCAATATCAGGGAAGAAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGCATCGCCAAG
AAAGTAAGATTCGCCGTTGCGGCTTCAATCTTTTA
Found at i:30593205 original size:150 final size:150
Alignment explanation
Indices: 30593021--30593345 Score: 490
Period size: 150 Copynumber: 2.2 Consensus size: 150
30593011 TCGGGGAATA
* * *
30593021 AGATTCGCCATTGTAGCTTCAATCTGCTCCACTGCATCGCCAAGAAAGTAAGATTCACCGTTAC-
1 AGATTCGCCGTTGTAGCTTCAATCTGATCCACTGCATCACCAAGAAAGTAAGATTCACCGTTACA
30593085 GACTTCAATCTTTTAAATTGCAATATCAAGGAAGAAAGATTCGCCGTCGTAGCTTTAATCTGCTA
66 G-CTTCAATCTTTTAAATTGCAATATCAAGGAAGAAAGATTCGCCGTCGTAGCTTTAATCTGCTA
*
30593150 CACTGTACTGCCAGAAAAGTG
130 CACTGTACTGCAAGAAAAGTG
* * * *
30593171 AGATTCGTCGTTGTAGCTTCAATCTGATCCACTGCATCATCATGAAAGTAAGATTCACCGTTGCA
1 AGATTCGCCGTTGTAGCTTCAATCTGATCCACTGCATCACCAAGAAAGTAAGATTCACCGTTACA
* * * *
30593236 GCTTCAATCTTTTTAATTGCAATATCAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTGC
66 GCTTCAATCTTTTAAATTGCAATATCAAGGAAGAAAGATTCGCCGTCGTAGCTTTAATCTGCTAC
**
30593301 ACTGTACTGCAAGGGAAGTG
131 ACTGTACTGCAAGAAAAGTG
* *
30593321 AGATTCGCCGTTGTGGCTTTAATCT
1 AGATTCGCCGTTGTAGCTTCAATCT
30593346 CTTTAATTAC
Statistics
Matches: 157, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
150 156 0.99
151 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (150 bp):
AGATTCGCCGTTGTAGCTTCAATCTGATCCACTGCATCACCAAGAAAGTAAGATTCACCGTTACA
GCTTCAATCTTTTAAATTGCAATATCAAGGAAGAAAGATTCGCCGTCGTAGCTTTAATCTGCTAC
ACTGTACTGCAAGAAAAGTG
Found at i:30593262 original size:349 final size:349
Alignment explanation
Indices: 30592834--30593493 Score: 1097
Period size: 349 Copynumber: 1.9 Consensus size: 349
30592824 ATTTGCCGTC
* * * * *
30592834 GTAGCTTTAATCTGATCCACTGCATCGCCAAGGAAGTAAGATTCGCCGTTGCGGCTTCAATCTCT
1 GTAGCTTCAATCTGATCCACTGCATCACCAAGAAAGTAAGATTCACCGTTGCAGCTTCAATCTCT
*
30592899 TAAATTGCAATATCAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTGCACTGTACTGCCA
66 TAAATTGCAATATCAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTGCACTGTACTGCAA
* * *
30592964 GAGAAGTGAGATTCGCCGTTGTGGCTTCAATCTCTTTAATTGCAATGTCGGGGAATAAGATTCGC
131 GAGAAGTGAGATTCGCCGTTGTGGCTTCAATCTCTTTAATTACAATGTCGAGGAACAAGATTCGC
*
30593029 CATTGTAGCTTCAATCTGCTCCACTGCATCGCCAAGAAAGTAAGATTCACCGTTACGACTTCAAT
196 CATTGTAGCTTCAATCTGATCCACTGCATCGCCAAGAAAGTAAGATTCACCGTTACGACTTCAAT
30593094 C-TTTTAAATTGCAATATCAAGGAAGAAAGATTCGCCGTCGTAGCTTTAATCTGCTACACTGTAC
261 CTTTTTAAA-TGCAATATCAAGGAAGAAAGATTCGCCGTCGTAGCTTTAATCTGCTACACTGTAC
30593158 TGCCAGAAAAGTGAGATTCGTCGTT
325 TGCCAGAAAAGTGAGATTCGTCGTT
* * *
30593183 GTAGCTTCAATCTGATCCACTGCATCATCATGAAAGTAAGATTCACCGTTGCAGCTTCAATCTTT
1 GTAGCTTCAATCTGATCCACTGCATCACCAAGAAAGTAAGATTCACCGTTGCAGCTTCAATCTCT
*
30593248 TTAATTGCAATATCAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTGCACTGTACTGCAA
66 TAAATTGCAATATCAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTGCACTGTACTGCAA
* *
30593313 GGGAAGTGAGATTCGCCGTTGTGGCTTTAATCTCTTTAATTACAATGTCGAGGAACAAGATTCGC
131 GAGAAGTGAGATTCGCCGTTGTGGCTTCAATCTCTTTAATTACAATGTCGAGGAACAAGATTCGC
* * * *
30593378 CGTTGTAGCTTCAATCTGATCCACTGCATCGCCAAGAAAGTAAGATTCGCCGTTGCGGCTTCAAT
196 CATTGTAGCTTCAATCTGATCCACTGCATCGCCAAGAAAGTAAGATTCACCGTTACGACTTCAAT
* * *
30593443 CTTTTTAAATGCAATATCAGGGAAGCAAGATTTGCCGTCGTAGCTTTAATC
261 CTTTTTAAATGCAATATCAAGGAAGAAAGATTCGCCGTCGTAGCTTTAATC
30593494 CGTTCCACTA
Statistics
Matches: 287, Mismatches: 23, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
349 280 0.98
350 7 0.02
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (349 bp):
GTAGCTTCAATCTGATCCACTGCATCACCAAGAAAGTAAGATTCACCGTTGCAGCTTCAATCTCT
TAAATTGCAATATCAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTGCACTGTACTGCAA
GAGAAGTGAGATTCGCCGTTGTGGCTTCAATCTCTTTAATTACAATGTCGAGGAACAAGATTCGC
CATTGTAGCTTCAATCTGATCCACTGCATCGCCAAGAAAGTAAGATTCACCGTTACGACTTCAAT
CTTTTTAAATGCAATATCAAGGAAGAAAGATTCGCCGTCGTAGCTTTAATCTGCTACACTGTACT
GCCAGAAAAGTGAGATTCGTCGTT
Found at i:30593275 original size:100 final size:100
Alignment explanation
Indices: 30593171--30593522 Score: 397
Period size: 100 Copynumber: 3.5 Consensus size: 100
30593161 CAGAAAAGTG
* * * * *
30593171 AGATTCGTCGTTGTAGCTTCAATCTGATCCACTGCATCATCATGAAAGTAAGATTCACCGTTGCA
1 AGATTCGCCGTCGTAGCTTCAATCTGATCCACTGCATCACCATGAAAGTAAGATTCGCCGTTGCG
30593236 GCTTCAATCTTTTTAATTGCAATATCAGGGAAGCA
66 GCTTCAATCTTTTTAATTGCAATATCAGGGAAGCA
* * * * * * *
30593271 AGATTCGCCGTCGTAGCTTTAATCTGCTGCACTGTACTGCA--AGGGAAGTGAGATTCGCCGTTG
1 AGATTCGCCGTCGTAGCTTCAATCTGATCCACTGCA-T-CACCATGAAAGTAAGATTCGCCGTTG
* * * * *
30593334 TGGCTTTAATCTCTTTAATTACAATGTC-GAGGAA-CA
64 CGGCTTCAATCTTTTTAATTGCAATATCAG-GGAAGCA
* * *
30593370 AGATTCGCCGTTGTAGCTTCAATCTGATCCACTGCATCGCCAAGAAAGTAAGATTCGCCGTTGCG
1 AGATTCGCCGTCGTAGCTTCAATCTGATCCACTGCATCACCATGAAAGTAAGATTCGCCGTTGCG
*
30593435 GCTTCAATCTTTTTAAATGCAATATCAGGGAAGCA
66 GCTTCAATCTTTTTAATTGCAATATCAGGGAAGCA
* * * * * *
30593470 AGATTTGCCGTCGTAGCTTTAATCCGTTCCACTACATCACCATGGAAGATAAG
1 AGATTCGCCGTCGTAGCTTCAATCTGATCCACTGCATCACCATGAAAG-TAAG
30593523 GTTTGATAAG
Statistics
Matches: 204, Mismatches: 40, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
97 1 0.00
98 1 0.00
99 79 0.39
100 116 0.57
101 5 0.02
102 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (100 bp):
AGATTCGCCGTCGTAGCTTCAATCTGATCCACTGCATCACCATGAAAGTAAGATTCGCCGTTGCG
GCTTCAATCTTTTTAATTGCAATATCAGGGAAGCA
Found at i:30593691 original size:44 final size:43
Alignment explanation
Indices: 30593600--30594227 Score: 283
Period size: 44 Copynumber: 14.3 Consensus size: 43
30593590 ACCAGTATGG
* * * * * *
30593600 GAAGACAAGATCTGC-ATCTTCGATCCACTTCCCACCAATATAG
1 GAAGACAAGATCTGCTATCTTTGATCTACTT-CCGCCAACACAT
* **
30593643 GAAGACAGGGCCTGCTATCTTTGATCTACTTCACGCCAACACAT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTC-CGCCAACACAT
* * * *
30593687 GAAGACAAGATATGCTTTCTTTGATCTACTT-CGCCACCAGTAT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCCGCCAACA-CAT
* * * * *
30593730 GGGAAGACAAGATCTGC-AT-TTTCGATCCACTTCCTACCAATATAG
1 --GAAGACAAGATCTGCTATCTTT-GATCTACTTCC-GCCAACACAT
* * * * *
30593775 GAAGACAGGATCTGCTATCTTCGATCCACTTCACGTCAAAACAT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTC-CGCCAACACAT
* * *
30593819 GAAGACAAGATCTGCTTTCTTTGATCTACTT-CGCCACCAGTAT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCCGCCAACA-CAT
* * * * * * *
30593862 GGGAAGATAAGATATGC-AT-TTTCGATCCACTTCCTACCAATATAG
1 --GAAGACAAGATCTGCTATCTTT-GATCTACTTCC-GCCAACACAT
* * * * *
30593907 GAAGACAGGACCTGCTATCTTCGATCCACTTCACGCCAAAACAT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTC-CGCCAACACAT
* * * * *
30593951 GAAGACAAGATCTACTTTCTTCGATCTACTT-TGCCACCAGTC-T
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCCGCCAACA--CAT
* * * * * * *
30593994 GGGAAGACAAGATCTGC-ATATTCGATCCACTTCCTACCAATATAG
1 --GAAGACAAGATCTGCTATCTTTGATCTACTTCC-GCCAACACAT
* * * *
30594039 GAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAAAACAT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTC-CGCCAACACAT
* * * ** *
30594083 GAAGACAAGATCTACTTTCTTCT-ATCTAC-TACGCCCCCAGTAT
1 GAAGACAAGATCTGCTATCTT-TGATCTACTTCCGCCAACA-CAT
* ** * * * * *
30594126 GGGAAGACAAGATCTGC-ATATTCAATCCACTTCCTACCAATATAG
1 --GAAGACAAGATCTGCTATCTTTGATCTACTTCC-GCCAACACAT
* * * *
30594171 GAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTC-CGCCAACACAT
30594215 GAAGACAAGATCT
1 GAAGACAAGATCT
30594228 ACTTTAATGA
Statistics
Matches: 435, Mismatches: 112, Indels: 75
0.70 0.18 0.12
Matches are distributed among these distances:
42 22 0.05
43 78 0.18
44 247 0.57
45 73 0.17
46 15 0.03
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (43 bp):
GAAGACAAGATCTGCTATCTTTGATCTACTTCCGCCAACACAT
Found at i:30593724 original size:132 final size:132
Alignment explanation
Indices: 30593561--30594232 Score: 1085
Period size: 132 Copynumber: 5.1 Consensus size: 132
30593551 TCAGAGAGAT
* * * *
30593561 AAGATTTGTTTTCTTTGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCC
1 AAGATCTGCTTTCTTTGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATATTCGATCC
* * * *
30593626 ACTTCCCACCAATATAGGAAGACAGGGCCTGCTATCTTTGATCTACTTCACGCCAACACATGAAG
66 ACTTCCTACCAATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAAAACATGAAG
30593691 AC
131 AC
* *
30593693 AAGATATGCTTTCTTTGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATTTTCGATCC
1 AAGATCTGCTTTCTTTGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATATTCGATCC
* * *
30593758 ACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCCACTTCACGTCAAAACATGAAG
66 ACTTCCTACCAATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAAAACATGAAG
30593823 AC
131 AC
* * *
30593825 AAGATCTGCTTTCTTTGATCTACTTCGCCACCAGTATGGGAAGATAAGATATGCATTTTCGATCC
1 AAGATCTGCTTTCTTTGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATATTCGATCC
*
30593890 ACTTCCTACCAATATAGGAAGACAGGACCTGCTATCTTCGATCCACTTCACGCCAAAACATGAAG
66 ACTTCCTACCAATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAAAACATGAAG
30593955 AC
131 AC
* * * *
30593957 AAGATCTACTTTCTTCGATCTACTTTGCCACCAGTCTGGGAAGACAAGATCTGCATATTCGATCC
1 AAGATCTGCTTTCTTTGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATATTCGATCC
30594022 ACTTCCTACCAATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAAAACATGAAG
66 ACTTCCTACCAATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAAAACATGAAG
30594087 AC
131 AC
* * * *
30594089 AAGATCTACTTTCTTCT-ATCTACTACGCCCCCAGTATGGGAAGACAAGATCTGCATATTCAATC
1 AAGATCTGCTTTCTT-TGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATATTCGATC
*
30594153 CACTTCCTACCAATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAA
65 CACTTCCTACCAATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAAAACATGAA
30594218 GAC
130 GAC
*
30594221 AAGATCTACTTT
1 AAGATCTGCTTT
30594233 AATGACTCCA
Statistics
Matches: 508, Mismatches: 31, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
132 508 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (132 bp):
AAGATCTGCTTTCTTTGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATATTCGATCC
ACTTCCTACCAATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAAAACATGAAG
AC
Found at i:30594043 original size:88 final size:90
Alignment explanation
Indices: 30593572--30594232 Score: 442
Period size: 88 Copynumber: 7.5 Consensus size: 90
30593562 AGATTTGTTT
* * * * * * *
30593572 TCTTTGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTC-CCAC
1 TCTTCGATCCACTTCACTACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCAC
* * **
30593635 CAATATAGGAAGACAGGGCCTGCTA
66 CAATATGGGAAGACAAGATCTGCTA
* * * * * * * *
30593660 TCTTTGATCTACTTCAC-GCCAACACATGAAGACAAGATATGCTTTCTTTGATCTACTTCGCCAC
1 TCTTCGATCCACTTCACTACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCAC
*
30593724 CAGTATGGGAAGACAAGATCTGC-A
66 CAATATGGGAAGACAAGATCTGCTA
* * * * *
30593748 TTTTCGATCCACTTC-CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCCACTTCACGTC
1 TCTTCGATCCACTTCACTACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACTT--CGCC
* * *
30593812 A-AAACAT--GAAGACAAGATCTGCTT
64 ACCAATATGGGAAGACAAGATCTGCTA
* * * * * * * * * * *
30593836 TCTTTGATCTACTTCGCCACCAGTATGGGAAGATAAGATATGCATT-TTCGATCCACTTC-CTAC
1 TCTTCGATCCACTTCACTACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCAC
* * *
30593899 CAATATAGGAAGACAGGACCTGCTA
66 CAATATGGGAAGACAAGATCTGCTA
* * * * * *
30593924 TCTTCGATCCACTTCAC-GCCAAAACATGAAGACAAGATCTACTTTCTTCGATCTACTTTGCCAC
1 TCTTCGATCCACTTCACTACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCAC
* *
30593988 CAGTCTGGGAAGACAAGATCTGC-A
66 CAATATGGGAAGACAAGATCTGCTA
* * * *
30594012 TATTCGATCCACTTC-CTACCAATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCC
1 TCTTCGATCCACTTCACTACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACTT--CGCC
* * * *
30594076 A-AAACAT--GAAGACAAGATCTACTT
64 ACCAATATGGGAAGACAAGATCTGCTA
* * * * ** * * * * * * *
30594100 TCTTCTATCTACTACGCCCCCAGTATGGGAAGACAAGATCTGC-ATATTCAATCCACTTC-CTAC
1 TCTTCGATCCACTTCACTACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCAC
* * *
30594163 CAATATAGGAAGACAGGACCTGCTA
66 CAATATGGGAAGACAAGATCTGCTA
* * * * *
30594188 TCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGATCTACTTT
1 TCTTCGATCCACTTCACTACCAATATAGGAAGACAAGATCTGCTTT
30594233 AATGACTCCA
Statistics
Matches: 435, Mismatches: 117, Indels: 42
0.73 0.20 0.07
Matches are distributed among these distances:
85 3 0.01
86 10 0.02
87 86 0.20
88 237 0.54
89 91 0.21
90 8 0.02
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (90 bp):
TCTTCGATCCACTTCACTACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCAC
CAATATGGGAAGACAAGATCTGCTA
Found at i:30595193 original size:6 final size:6
Alignment explanation
Indices: 30595182--30595244 Score: 58
Period size: 6 Copynumber: 10.2 Consensus size: 6
30595172 TTGGCCTCTC
* *
30595182 CTTTTT CTTTTT GTTTTT CTTTTT -TCTTTT CTTTTTT CATTTTTT ATTTTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CT-TTTT C-TTTTT C--TTTTT CTTTTT
30595233 CTTTTT -TTTTT C
1 CTTTTT CTTTTT C
30595245 AAGTGAAGTG
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
5 6 0.12
6 30 0.62
7 5 0.10
8 7 0.15
ACGTcount: A:0.03, C:0.13, G:0.02, T:0.83
Consensus pattern (6 bp):
CTTTTT
Found at i:30595200 original size:12 final size:11
Alignment explanation
Indices: 30595183--30595244 Score: 72
Period size: 12 Copynumber: 5.5 Consensus size: 11
30595173 TGGCCTCTCC
30595183 TTTTTCTTTTT
1 TTTTTCTTTTT
30595194 GTTTTTCTTTTT
1 -TTTTTCTTTTT
30595206 TCTTTTCTTTTT
1 T-TTTTCTTTTT
** *
30595218 TCATT-TTTTA
1 TTTTTCTTTTT
30595228 TTTTTCTTTTT
1 TTTTTCTTTTT
30595239 TTTTTC
1 TTTTTC
30595245 AAGTGAAGTG
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
10 7 0.17
11 13 0.31
12 22 0.52
ACGTcount: A:0.03, C:0.11, G:0.02, T:0.84
Consensus pattern (11 bp):
TTTTTCTTTTT
Found at i:30595205 original size:19 final size:18
Alignment explanation
Indices: 30595183--30595244 Score: 72
Period size: 19 Copynumber: 3.3 Consensus size: 18
30595173 TGGCCTCTCC
30595183 TTTTTCTTTTTGTTTTTCT
1 TTTTTCTTTTT-TTTTTCT
30595202 TTTTTCTTTTCTTTTTTCAT
1 TTTTTCTTTT-TTTTTTC-T
* *
30595222 TTTTTATTTTTCTTTT-T
1 TTTTTCTTTTTTTTTTCT
30595239 TTTTTC
1 TTTTTC
30595245 AAGTGAAGTG
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
17 6 0.16
19 21 0.55
20 11 0.29
ACGTcount: A:0.03, C:0.11, G:0.02, T:0.84
Consensus pattern (18 bp):
TTTTTCTTTTTTTTTTCT
Found at i:30595688 original size:15 final size:14
Alignment explanation
Indices: 30595652--30595687 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
30595642 CCCCAGTAGA
30595652 GTTTTTTTCCTCTT
1 GTTTTTTTCCTCTT
* *
30595666 GTTTTTTTGCTTTT
1 GTTTTTTTCCTCTT
30595680 GTTTTTTT
1 GTTTTTTT
30595688 TTATTTGGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.00, C:0.11, G:0.11, T:0.78
Consensus pattern (14 bp):
GTTTTTTTCCTCTT
Found at i:30595694 original size:14 final size:13
Alignment explanation
Indices: 30595664--30595731 Score: 57
Period size: 14 Copynumber: 5.0 Consensus size: 13
30595654 TTTTTTCCTC
*
30595664 TTGTTTTTTTGCTT
1 TTGTTTTTTT-TTT
30595678 TTGTTTTTTTTTAT
1 TTGTTTTTTTTT-T
* *
30595692 TTGGGTTTTTTATT
1 TT-GTTTTTTTTTT
*
30595706 TT-TTTATTTTTT
1 TTGTTTTTTTTTT
30595718 TTGTTCTTTTTTTT
1 TTGTT-TTTTTTTT
30595732 GCCTCCACTG
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
12 9 0.21
13 3 0.07
14 23 0.53
15 8 0.19
ACGTcount: A:0.04, C:0.03, G:0.10, T:0.82
Consensus pattern (13 bp):
TTGTTTTTTTTTT
Found at i:30597131 original size:62 final size:62
Alignment explanation
Indices: 30597034--30597269 Score: 427
Period size: 62 Copynumber: 3.8 Consensus size: 62
30597024 ACTTTTAGAC
* * * * *
30597034 TTTAGGAAATTTATTGTATGCAATGAAAAGTAATGTTGATGCATGAATCCGTATTTTTGGAT
1 TTTAGGAAATTTATTGAATGTAATGAAATGTAATGTTAATGCATGAATGCGTATTTTTGGAT
30597096 TTTAGGAAATTTATTGAATGTAATGAAATGTAATGTTAATGCATGAATGCGTATTTTTGGAT
1 TTTAGGAAATTTATTGAATGTAATGAAATGTAATGTTAATGCATGAATGCGTATTTTTGGAT
30597158 TTTAGGAAATTTATTGAATGTAATGAAATGTAATGTTAATGCATGAATGCGTATTTTTGGAT
1 TTTAGGAAATTTATTGAATGTAATGAAATGTAATGTTAATGCATGAATGCGTATTTTTGGAT
30597220 TTTAGGAAATTTATTGAATGTAATGAAATGTAATGTTAATGCATGAATGC
1 TTTAGGAAATTTATTGAATGTAATGAAATGTAATGTTAATGCATGAATGC
30597270 AAAAAAAAAA
Statistics
Matches: 169, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 169 1.00
ACGTcount: A:0.34, C:0.04, G:0.21, T:0.41
Consensus pattern (62 bp):
TTTAGGAAATTTATTGAATGTAATGAAATGTAATGTTAATGCATGAATGCGTATTTTTGGAT
Found at i:30598975 original size:107 final size:107
Alignment explanation
Indices: 30598802--30599107 Score: 488
Period size: 107 Copynumber: 2.9 Consensus size: 107
30598792 TTTTAAGAGG
* * *
30598802 ATATTTGGCTATTTAGTCAAACAAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGATTT
1 ATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAACACGTTAGGGCACGTTTCCTCGATTT
*
30598867 TCCAAACGCGAAGTATTGCCTTAATTTAAAAGTTTAAAAAGA
66 TCCAAACGCGAAATATTGCCTTAATTTAAAAGTTTAAAAAGA
* * *
30598909 ATATTTGGCTATTTGGTCAAACGAGAAGTCGAAACCCAACACATTAGGGCACATTTCCTCGATTT
1 ATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAACACGTTAGGGCACGTTTCCTCGATTT
* * *
30598974 TCCAAACGCGAAATACTGCCTTATTTTAAAAGTTTAAAAAGG
66 TCCAAACGCGAAATATTGCCTTAATTTAAAAGTTTAAAAAGA
* * *
30599016 ATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAACACGTTAGGGCACGTTTTCTTGATTT
1 ATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAACACGTTAGGGCACGTTTCCTCGATTT
30599081 TCCAAACGCGAAATATTGCCTT-ATTTA
66 TCCAAACGCGAAATATTGCCTTAATTTA
30599108 GAAAAAACTT
Statistics
Matches: 181, Mismatches: 18, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
106 4 0.02
107 177 0.98
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.30
Consensus pattern (107 bp):
ATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAACACGTTAGGGCACGTTTCCTCGATTT
TCCAAACGCGAAATATTGCCTTAATTTAAAAGTTTAAAAAGA
Found at i:30599833 original size:15 final size:15
Alignment explanation
Indices: 30599810--30599840 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
30599800 ATTTTAACAT
30599810 AGATAATAATATATA
1 AGATAATAATATATA
*
30599825 AGATGATAATATATA
1 AGATAATAATATATA
30599840 A
1 A
30599841 ATTTAAACCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.10, T:0.32
Consensus pattern (15 bp):
AGATAATAATATATA
Found at i:30604987 original size:16 final size:16
Alignment explanation
Indices: 30604966--30604997 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
30604956 CGACTTTAAC
30604966 TGTCTGGAAGCATAAG
1 TGTCTGGAAGCATAAG
30604982 TGTCTGGAAGCATAAG
1 TGTCTGGAAGCATAAG
30604998 CTATCACTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.12, G:0.31, T:0.25
Consensus pattern (16 bp):
TGTCTGGAAGCATAAG
Found at i:30623605 original size:56 final size:52
Alignment explanation
Indices: 30623479--30623615 Score: 161
Period size: 50 Copynumber: 2.6 Consensus size: 52
30623469 CTCATATAGG
* * **
30623479 TGCCCATGCCATGTCCCGGACATGGTCTTACGGGGGACCTCTCATCTCGGTA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCAATA
* *
30623531 --CCAACGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATAACCTCAATAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCAT---CTCAAT-A
*
30623585 TGCCAATGCCATTTCCCAGACATGGTCTTAC
1 TGCCAATGCCATGTCCCAGACATGGTCTTAC
30623616 ATGGAGTCTC
Statistics
Matches: 71, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
50 39 0.55
53 4 0.06
54 1 0.01
56 27 0.38
ACGTcount: A:0.22, C:0.33, G:0.20, T:0.25
Consensus pattern (52 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCAATA
Found at i:30627023 original size:20 final size:20
Alignment explanation
Indices: 30626988--30627036 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
30626978 ATCATGGTCT
*
30626988 TTGCTT-CTTCTTTACTTAC
1 TTGCTTACTTGTTTACTTAC
30627007 TCT-CTTACTTGTTTACTTAC
1 T-TGCTTACTTGTTTACTTAC
30627027 TTGCTTACTT
1 TTGCTTACTT
30627037 AAATAACTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.12, C:0.24, G:0.06, T:0.57
Consensus pattern (20 bp):
TTGCTTACTTGTTTACTTAC
Found at i:30627355 original size:50 final size:50
Alignment explanation
Indices: 30627288--30627393 Score: 140
Period size: 50 Copynumber: 2.1 Consensus size: 50
30627278 TTTCCTGTAC
* * * **
30627288 TGCCAATGTCATATCCTAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGTCATATCCTAGACATAGTCTTACAGGGGACATCTCATATCGG
* * *
30627338 TGCCCATGTCATGTCCTAGACATAGTCTTACAGGGGACATCTCATCTCGG
1 TGCCAATGTCATATCCTAGACATAGTCTTACAGGGGACATCTCATATCGG
30627388 TGCCAA
1 TGCCAA
30627394 CGCCATGTCT
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.30
Consensus pattern (50 bp):
TGCCAATGTCATATCCTAGACATAGTCTTACAGGGGACATCTCATATCGG
Found at i:30627416 original size:50 final size:50
Alignment explanation
Indices: 30627301--30627418 Score: 130
Period size: 50 Copynumber: 2.4 Consensus size: 50
30627291 CAATGTCATA
* * ** * * *
30627301 TCCTAGATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGTCATG
1 TCCTAGACATGGTCTTACAGGGGACATCTCATATCGGTGCCAACGCCATG
* *
30627351 TCCTAGACATAGTCTTACAGGGGACATCTCATCTCGGTGCCAACGCCATG
1 TCCTAGACATGGTCTTACAGGGGACATCTCATATCGGTGCCAACGCCATG
*
30627401 T-CTCAGGCATGGTCTTAC
1 TCCT-AGACATGGTCTTAC
30627419 GTAGGACCTC
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
49 2 0.04
50 54 0.96
ACGTcount: A:0.21, C:0.26, G:0.23, T:0.30
Consensus pattern (50 bp):
TCCTAGACATGGTCTTACAGGGGACATCTCATATCGGTGCCAACGCCATG
Found at i:30649395 original size:15 final size:15
Alignment explanation
Indices: 30649375--30649418 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
30649365 AAATGAGTTA
*
30649375 GAAAAAGAAGTAAGT
1 GAAAAAGAAGGAAGT
*
30649390 GAAAAAGATGGAAGT
1 GAAAAAGAAGGAAGT
*
30649405 GAACAAGCAAGGAA
1 GAAAAAG-AAGGAA
30649419 CATTCTTACT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
15 19 0.79
16 5 0.21
ACGTcount: A:0.57, C:0.05, G:0.30, T:0.09
Consensus pattern (15 bp):
GAAAAAGAAGGAAGT
Found at i:30661156 original size:58 final size:59
Alignment explanation
Indices: 30661048--30661174 Score: 213
Period size: 58 Copynumber: 2.2 Consensus size: 59
30661038 TGTCCTAGAA
*
30661048 AAATTCATGAGTGATTCAAGAAAAAAAAATTCTAACAATTGAAAATATCAGATAAGTCTT
1 AAATTCATGAGTGATTCAAG-AAAAAAAATTCTAACAATTGAAAAGATCAGATAAGTCTT
30661108 AAATTCATGAGTGATTCAAG-AAAAAAATTCTAACAATTGAAAAGATCAGATAAGTCTT
1 AAATTCATGAGTGATTCAAGAAAAAAAATTCTAACAATTGAAAAGATCAGATAAGTCTT
*
30661166 ACATT-ATGA
1 AAATTCATGA
30661175 ACGAACCCTC
Statistics
Matches: 65, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
57 4 0.06
58 41 0.63
60 20 0.31
ACGTcount: A:0.49, C:0.10, G:0.13, T:0.28
Consensus pattern (59 bp):
AAATTCATGAGTGATTCAAGAAAAAAAATTCTAACAATTGAAAAGATCAGATAAGTCTT
Found at i:30661982 original size:21 final size:21
Alignment explanation
Indices: 30661958--30661998 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
30661948 AGATTGATTA
* *
30661958 TATAGATATATCCAACTTTTC
1 TATAGAGATATACAACTTTTC
*
30661979 TATAGAGATATAGAACTTTT
1 TATAGAGATATACAACTTTT
30661999 ATCAGTAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.41
Consensus pattern (21 bp):
TATAGAGATATACAACTTTTC
Found at i:30662030 original size:21 final size:21
Alignment explanation
Indices: 30662006--30662045 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
30661996 TTTATCAGTA
*
30662006 ATTCCATTTCATTTATATTAT
1 ATTCCATATCATTTATATTAT
*
30662027 ATTCTATATCATTTATATT
1 ATTCCATATCATTTATATT
30662046 TTTAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.12, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTCCATATCATTTATATTAT
Found at i:30662635 original size:11 final size:11
Alignment explanation
Indices: 30662619--30662643 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
30662609 GGGTCCATTT
30662619 ATATACAATAA
1 ATATACAATAA
30662630 ATATACAATAA
1 ATATACAATAA
30662641 ATA
1 ATA
30662644 CAATAATCGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (11 bp):
ATATACAATAA
Found at i:30666192 original size:37 final size:37
Alignment explanation
Indices: 30666151--30666224 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
30666141 CTTCTCCCTT
*
30666151 TATACATAGGTCATCGATTCAGCATTGGAAAAAGGGG
1 TATACATAAGTCATCGATTCAGCATTGGAAAAAGGGG
30666188 TATACATAAGTCATCGATTCAGCATTGGAAAAAGGGG
1 TATACATAAGTCATCGATTCAGCATTGGAAAAAGGGG
30666225 CTCAAATCGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.36, C:0.14, G:0.26, T:0.24
Consensus pattern (37 bp):
TATACATAAGTCATCGATTCAGCATTGGAAAAAGGGG
Found at i:30670013 original size:8 final size:8
Alignment explanation
Indices: 30669967--30670012 Score: 56
Period size: 8 Copynumber: 5.8 Consensus size: 8
30669957 TGTTTTCACT
30669967 TCTCTCCC
1 TCTCTCCC
*
30669975 TCCCTCCC
1 TCTCTCCC
*
30669983 TCCCTCCC
1 TCTCTCCC
*
30669991 TCTCTCTC
1 TCTCTCCC
*
30669999 TCTCTCTC
1 TCTCTCCC
30670007 TCTCTC
1 TCTCTC
30670013 TAAGTAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 35 1.00
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (8 bp):
TCTCTCCC
Found at i:30670013 original size:12 final size:12
Alignment explanation
Indices: 30669967--30670008 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
30669957 TGTTTTCACT
30669967 TCTCTCCCTCCC
1 TCTCTCCCTCCC
*
30669979 TCCCTCCCTCCC
1 TCTCTCCCTCCC
* *
30669991 TCTCTCTCTCTC
1 TCTCTCCCTCCC
30670003 TCTCTC
1 TCTCTC
30670009 TCTCTAAGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38
Consensus pattern (12 bp):
TCTCTCCCTCCC
Found at i:30672263 original size:19 final size:19
Alignment explanation
Indices: 30672214--30672263 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
30672204 CTCATAATTT
**
30672214 TTTTTTGTTATTTTCTCATA
1 TTTTTT-TTATTCCCTCATA
**
30672234 TTTTTAATATTCCCTCATA
1 TTTTTTTTATTCCCTCATA
30672253 TTTTTTTTATT
1 TTTTTTTTATT
30672264 TTTTTGTATG
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
19 19 0.79
20 5 0.21
ACGTcount: A:0.18, C:0.12, G:0.02, T:0.68
Consensus pattern (19 bp):
TTTTTTTTATTCCCTCATA
Found at i:30672434 original size:22 final size:20
Alignment explanation
Indices: 30672368--30672434 Score: 62
Period size: 20 Copynumber: 3.2 Consensus size: 20
30672358 ACTTCTTCCG
* * *
30672368 ATTTTTTGATACTTTCTTAT
1 ATTTTTTTATAGTTTCGTAT
*
30672388 ATTTTTTTATAGTTTCGCAT
1 ATTTTTTTATAGTTTCGTAT
* *
30672408 GTTTTTTTTTAGTTCCTCGTAT
1 ATTTTTTTATAGTT--TCGTAT
30672430 ATTTT
1 ATTTT
30672435 AGTATTCTCT
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
20 28 0.76
22 9 0.24
ACGTcount: A:0.16, C:0.10, G:0.09, T:0.64
Consensus pattern (20 bp):
ATTTTTTTATAGTTTCGTAT
Found at i:30672537 original size:19 final size:19
Alignment explanation
Indices: 30672505--30672557 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
30672495 TTTTTGGTAG
* * *
30672505 TTTCTTATACTTTTCTGTA
1 TTTCTCATAATTTTCTATA
*
30672524 TTTCTCATAATTTTTTATA
1 TTTCTCATAATTTTCTATA
*
30672543 TTTCCTCAAAATTTT
1 TTT-CTCATAATTTT
30672558 TTACTCCCTC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 18 0.64
20 10 0.36
ACGTcount: A:0.23, C:0.15, G:0.02, T:0.60
Consensus pattern (19 bp):
TTTCTCATAATTTTCTATA
Found at i:30672550 original size:20 final size:19
Alignment explanation
Indices: 30672522--30672560 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
30672512 TACTTTTCTG
*
30672522 TATTTCTCATAATTTTTTA
1 TATTTCTCAAAATTTTTTA
30672541 TATTTCCTCAAAATTTTTTA
1 TATTT-CTCAAAATTTTTTA
30672561 CTCCCTCAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.28, C:0.13, G:0.00, T:0.59
Consensus pattern (19 bp):
TATTTCTCAAAATTTTTTA
Found at i:30677050 original size:27 final size:27
Alignment explanation
Indices: 30676993--30677059 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 27
30676983 ATAGTCCGTT
****
30676993 GGGACAGTAAACACAGGGTAGTCTGGT
1 GGGACAGTAAACACAGGGTAGTCCACC
*
30677020 GGGACAGTAAACACGGGGTAGTCCACC
1 GGGACAGTAAACACAGGGTAGTCCACC
*
30677047 GGGATAGTAAACA
1 GGGACAGTAAACA
30677060 TGAGGATTAC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.33, C:0.18, G:0.34, T:0.15
Consensus pattern (27 bp):
GGGACAGTAAACACAGGGTAGTCCACC
Found at i:30678918 original size:34 final size:33
Alignment explanation
Indices: 30678880--30678976 Score: 77
Period size: 28 Copynumber: 3.2 Consensus size: 33
30678870 TAAAGTCATG
30678880 CATTATGTAACTTTCATGTTAGTTAAGTTTGCAT
1 CATTAT-TAACTTTCATGTTAGTTAAGTTTGCAT
* * * *
30678914 CATTA--AA--TT-AAGTCATTTTAGTTT--A-
1 CATTATTAACTTTCATGTTAGTTAAGTTTGCAT
30678939 -ATTATATAACTTTCATGTTAGTTAAGTTTGCAT
1 CATTAT-TAACTTTCATGTTAGTTAAGTTTGCAT
30678972 CATTA
1 CATTA
30678977 AATTAAGTCA
Statistics
Matches: 45, Mismatches: 8, Indels: 20
0.62 0.11 0.27
Matches are distributed among these distances:
24 4 0.09
26 1 0.02
27 2 0.04
28 11 0.24
29 4 0.09
30 11 0.24
31 2 0.04
32 1 0.02
34 9 0.20
ACGTcount: A:0.31, C:0.10, G:0.11, T:0.47
Consensus pattern (33 bp):
CATTATTAACTTTCATGTTAGTTAAGTTTGCAT
Found at i:30682022 original size:28 final size:28
Alignment explanation
Indices: 30681991--30682265 Score: 252
Period size: 28 Copynumber: 9.8 Consensus size: 28
30681981 AAATTTCCAC
*
30681991 AAAGGCTTTTC-TTCTAGAGGTTCACCAT
1 AAAGGCTTTCCTTTC-AGAGGTTCACCAT
* *
30682019 AAAGGCTTTCCCTTCAGAGGTTCGTCCA-
1 AAAGGCTTTCCTTTCAGAGGTTC-ACCAT
* **
30682047 AAAGGCTTTCCTTTCAAAGGTTTGCCAT
1 AAAGGCTTTCCTTTCAGAGGTTCACCAT
*
30682075 AAAGGCTTTCCTTTCAGAGGTTCGA-CAA
1 AAAGGCTTTCCTTTCAGAGGTTC-ACCAT
* * * ** *
30682103 AAAGGATTTCCTTTCAAAGTTTTGCCAC
1 AAAGGCTTTCCTTTCAGAGGTTCACCAT
* * * **
30682131 AACGACTTTCCTTTCAAAGGTTTTCCAT
1 AAAGGCTTTCCTTTCAGAGGTTCACCAT
* **
30682159 AAAGGCTTTCCTTTTAGAGGTTTTCCAT
1 AAAGGCTTTCCTTTCAGAGGTTCACCAT
* *
30682187 AAAGGCTTTCCTTTTAGAGGTTCCCCAT
1 AAAGGCTTTCCTTTCAGAGGTTCACCAT
*
30682215 AAAGGCTTTCCTTTCAGAGGTT-AGTCAT
1 AAAGGCTTTCCTTTCAGAGGTTCA-CCAT
*
30682243 AAAAGGCTTTTCTTTCAGAGGTT
1 -AAAGGCTTTCCTTTCAGAGGTT
30682266 TGCCTCAAAG
Statistics
Matches: 208, Mismatches: 32, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
27 3 0.01
28 178 0.86
29 27 0.13
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (28 bp):
AAAGGCTTTCCTTTCAGAGGTTCACCAT
Found at i:30682051 original size:56 final size:57
Alignment explanation
Indices: 30681986--30682281 Score: 284
Period size: 56 Copynumber: 5.3 Consensus size: 57
30681976 TTCAGAAATT
* * * *
30681986 TCCACAAAGGCTTTTC-TTCTAGAGGTTCACCATAAAGGCTTTCCCTTCAGAGGTTCG
1 TCCATAAAGGCTTTCCTTTC-AGAGGTTTACCATAAAGGCTTTCCTTTCAGAGGTTCG
* *
30682043 TCCA-AAAGGCTTTCCTTTCAAAGGTTTGCCATAAAGGCTTTCCTTTCAGAGGTTCG
1 TCCATAAAGGCTTTCCTTTCAGAGGTTTACCATAAAGGCTTTCCTTTCAGAGGTTCG
* * * * * * * * * * *
30682099 -ACAAAAAGGATTTCCTTTCAAAGTTTTGCCACAACGACTTTCCTTTCAAAGGTT-T
1 TCCATAAAGGCTTTCCTTTCAGAGGTTTACCATAAAGGCTTTCCTTTCAGAGGTTCG
* * *
30682154 TCCATAAAGGCTTTCCTTTTAGAGGTTTTCCATAAAGGCTTTCCTTTTAGAGGTTC-
1 TCCATAAAGGCTTTCCTTTCAGAGGTTTACCATAAAGGCTTTCCTTTCAGAGGTTCG
* * * *
30682210 CCCATAAAGGCTTTCCTTTCAGAGG-TTAGTCATAAAAGGCTTTTCTTTCAGAGGTTTG
1 TCCATAAAGGCTTTCCTTTCAGAGGTTTA-CCAT-AAAGGCTTTCCTTTCAGAGGTTCG
30682268 -CC-TCAAAGGCTTTC
1 TCCAT-AAAGGCTTTC
30682282 AGTTTTCTAG
Statistics
Matches: 199, Mismatches: 32, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
55 4 0.02
56 156 0.78
57 39 0.20
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35
Consensus pattern (57 bp):
TCCATAAAGGCTTTCCTTTCAGAGGTTTACCATAAAGGCTTTCCTTTCAGAGGTTCG
Found at i:30682094 original size:84 final size:84
Alignment explanation
Indices: 30681991--30682265 Score: 313
Period size: 84 Copynumber: 3.3 Consensus size: 84
30681981 AAATTTCCAC
* *
30681991 AAAGGCTTTTC-TTCTAGAGGTTCACCATAAAGGCTTTCCCTTCAGAGGTTCGTCCA-AAAGGCT
1 AAAGGCTTTCCTTTC-AGAGGTTCACCATAAAGGCTTTCCTTTCAGAGGTTCG-CCACAAAGGCT
30682054 TTCCTTTCAAAGGTTTGCCAT
64 TTCCTTTCAAAGGTTTGCCAT
* * * * * * *
30682075 AAAGGCTTTCCTTTCAGAGGTTCGA-CAAAAAGGATTTCCTTTCAAAGTTTTGCCACAACGACTT
1 AAAGGCTTTCCTTTCAGAGGTTC-ACCATAAAGGCTTTCCTTTCAGAGGTTCGCCACAAAGGCTT
*
30682139 TCCTTTCAAAGGTTTTCCAT
65 TCCTTTCAAAGGTTTGCCAT
* ** * * *
30682159 AAAGGCTTTCCTTTTAGAGGTTTTCCATAAAGGCTTTCCTTTTAGAGGTTCCCCATAAAGGCTTT
1 AAAGGCTTTCCTTTCAGAGGTTCACCATAAAGGCTTTCCTTTCAGAGGTTCGCCACAAAGGCTTT
* * *
30682224 CCTTTCAGAGGTTAGTCAT
66 CCTTTCAAAGGTTTGCCAT
*
30682243 AAAAGGCTTTTCTTTCAGAGGTT
1 -AAAGGCTTTCCTTTCAGAGGTT
30682266 TGCCTCAAAG
Statistics
Matches: 157, Mismatches: 29, Indels: 9
0.81 0.15 0.05
Matches are distributed among these distances:
83 3 0.02
84 130 0.83
85 24 0.15
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (84 bp):
AAAGGCTTTCCTTTCAGAGGTTCACCATAAAGGCTTTCCTTTCAGAGGTTCGCCACAAAGGCTTT
CCTTTCAAAGGTTTGCCAT
Found at i:30682168 original size:13 final size:13
Alignment explanation
Indices: 30682146--30682197 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
30682136 CTTTCCTTTC
*
30682146 AAAGGTTTTCCAT
1 AAAGGCTTTCCAT
*
30682159 AAAGGCTTTCCTTTT
1 AAAGGCTTTCC--AT
* *
30682174 AGAGGTTTTCCAT
1 AAAGGCTTTCCAT
30682187 AAAGGCTTTCC
1 AAAGGCTTTCC
30682198 TTTTAGAGGT
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
13 20 0.67
15 10 0.33
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.38
Consensus pattern (13 bp):
AAAGGCTTTCCAT
Found at i:30689077 original size:29 final size:29
Alignment explanation
Indices: 30689031--30689317 Score: 242
Period size: 29 Copynumber: 9.8 Consensus size: 29
30689021 GTGTGCTAAA
30689031 CGATGGTCGTAACCATCCCTTTTCATATT
1 CGATGGTCGTAACCATCCCTTTTCATATT
* *
30689060 CGATGGTCGTCACAATCCCTTTTCATATT
1 CGATGGTCGTAACCATCCCTTTTCATATT
*
30689089 CGATGGTCGTCACCAT-CCTTTTCCATATT
1 CGATGGTCGTAACCATCCCTTTT-CATATT
* * *
30689118 CGATGGTTGAAACCATCCCTTTCCATTAAGTT
1 CGATGGTCGTAACCATCCCTTTTCA-T-A-TT
* *
30689150 -G-TGGTCGGAACCATCCCTTTTCATTAAGT
1 CGATGGTCGTAACCATCCCTTTTCA-T-ATT
* * *
30689179 -GGTGGTCGTAACCATCTCTTTTCATAGT
1 CGATGGTCGTAACCATCCCTTTTCATATT
* *** *
30689207 CGATAGTTAAAACTATCCCTTTTCATATT
1 CGATGGTCGTAACCATCCCTTTTCATATT
* * * *
30689236 CAATGGTTGTCACCATCTCTTTTCATAATT
1 CGATGGTCGTAACCATCCCTTTTCAT-ATT
* *
30689266 -GATGGTCGTCACCATCCTTTTTCATATT
1 CGATGGTCGTAACCATCCCTTTTCATATT
* * * *
30689294 CGATAGTCGAAACTATCCATTTTC
1 CGATGGTCGTAACCATCCCTTTTC
30689318 TTTAATCGAT
Statistics
Matches: 212, Mismatches: 37, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
28 12 0.06
29 144 0.68
30 52 0.25
31 2 0.01
32 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.38
Consensus pattern (29 bp):
CGATGGTCGTAACCATCCCTTTTCATATT
Found at i:30689200 original size:30 final size:30
Alignment explanation
Indices: 30689128--30689203 Score: 116
Period size: 30 Copynumber: 2.5 Consensus size: 30
30689118 CGATGGTTGA
* *
30689128 AACCATCCCTTTCCATTAAGTTGTGGTCGG
1 AACCATCCCTTTTCATTAAGTGGTGGTCGG
*
30689158 AACCATCCCTTTTCATTAAGTGGTGGTCGT
1 AACCATCCCTTTTCATTAAGTGGTGGTCGG
*
30689188 AACCATCTCTTTTCAT
1 AACCATCCCTTTTCAT
30689204 AGTCGATAGT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.21, C:0.26, G:0.16, T:0.37
Consensus pattern (30 bp):
AACCATCCCTTTTCATTAAGTGGTGGTCGG
Found at i:30707715 original size:122 final size:122
Alignment explanation
Indices: 30707565--30707808 Score: 393
Period size: 120 Copynumber: 2.0 Consensus size: 122
30707555 AAAGTAAAAA
30707565 AAAATAAGGTTTTTTTTTTAGTTTTCCTATTAGGACTAGGAAAATAATTAGAAGGCCTATATATG
1 AAAATAAGGTTTTTTTTTTAGTTTTCCTATTAGGACTAGGAAAATAATTAGAAGGCC--TATATG
* *
30707630 TATGGCTTGGCAAGCCACCGTTACCCATTACACCTTGAATTACATTAAATTTTCAGATT
64 TATGGCTTGGCAAGCCACCCTTACACATTACACCTTGAATTACATTAAATTTTCAGATT
*
30707689 AAAAT-AGG-TTTTTTTTTAGTTTTCCTATTAGGACTAGGAAAATAGTTAGAAGGCCTATATGTA
1 AAAATAAGGTTTTTTTTTTAGTTTTCCTATTAGGACTAGGAAAATAATTAGAAGGCCTATATGTA
* * * *
30707752 TGTCTTGGCCAGCCACCCTTATACATTACACCTTGAATTACATTAAATTTTTAGATT
66 TGGCTTGGCAAGCCACCCTTACACATTACACCTTGAATTACATTAAATTTTCAGATT
30707809 TGTTTGTGAG
Statistics
Matches: 113, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
120 59 0.52
122 46 0.41
123 3 0.03
124 5 0.04
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (122 bp):
AAAATAAGGTTTTTTTTTTAGTTTTCCTATTAGGACTAGGAAAATAATTAGAAGGCCTATATGTA
TGGCTTGGCAAGCCACCCTTACACATTACACCTTGAATTACATTAAATTTTCAGATT
Found at i:30709058 original size:21 final size:21
Alignment explanation
Indices: 30709033--30709076 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
30709023 ATCTTCAAGG
30709033 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
30709054 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
30709075 AT
1 AT
30709077 GTAATCTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.39
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:30709082 original size:19 final size:19
Alignment explanation
Indices: 30709032--30709087 Score: 85
Period size: 21 Copynumber: 2.8 Consensus size: 19
30709022 AATCTTCAAG
30709032 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
30709051 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
30709072 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
30709088 AGATATGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
19 15 0.44
21 19 0.56
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:30709094 original size:22 final size:23
Alignment explanation
Indices: 30709045--30709110 Score: 77
Period size: 23 Copynumber: 3.0 Consensus size: 23
30709035 ATGCAATCTT
*
30709045 AGATATGATATATGCAATCTT---
1 AGATATGAT-TATGTAATCTTAGA
30709066 AGATATGA-TATGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
*
30709088 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
30709111 GATTTAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
19 10 0.26
21 8 0.21
22 8 0.21
23 13 0.33
ACGTcount: A:0.38, C:0.06, G:0.17, T:0.39
Consensus pattern (23 bp):
AGATATGATTATGTAATCTTAGA
Found at i:30709120 original size:22 final size:23
Alignment explanation
Indices: 30709076--30709120 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
30709066 AGATATGATA
*
30709076 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
30709099 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
30709121 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:30709356 original size:23 final size:23
Alignment explanation
Indices: 30709312--30709356 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
30709302 TCTTATTTTG
* *
30709312 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
30709335 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
30709357 CAAATCTCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:30709599 original size:13 final size:13
Alignment explanation
Indices: 30709581--30709605 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
30709571 ATCTTGTATC
30709581 ATTATTATTATTT
1 ATTATTATTATTT
30709594 ATTATTATTATT
1 ATTATTATTATT
30709606 ATTTCTATAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
ATTATTATTATTT
Found at i:30712078 original size:15 final size:16
Alignment explanation
Indices: 30712053--30712084 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
30712043 AAGAAGAAAA
30712053 TTATGTTTTCTTATTT
1 TTATGTTTTCTTATTT
30712069 TTAT-TTTTCTTATTT
1 TTATGTTTTCTTATTT
30712084 T
1 T
30712085 AATATTTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.12, C:0.06, G:0.03, T:0.78
Consensus pattern (16 bp):
TTATGTTTTCTTATTT
Found at i:30712106 original size:19 final size:17
Alignment explanation
Indices: 30712058--30712107 Score: 50
Period size: 19 Copynumber: 2.9 Consensus size: 17
30712048 GAAAATTATG
*
30712058 TTTTCTTA-TTT-TTAT
1 TTTTCTTACTTTAATAT
*
30712073 TTTTCTTATTTTAATAT
1 TTTTCTTACTTTAATAT
30712090 TTATTCATTACTTTAATA
1 TT-TTC-TTACTTTAATA
30712108 ATAAAATAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
15 8 0.28
16 3 0.10
17 5 0.17
18 3 0.10
19 10 0.34
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTTCTTACTTTAATAT
Found at i:30714336 original size:358 final size:359
Alignment explanation
Indices: 30713668--30714384 Score: 1427
Period size: 358 Copynumber: 2.0 Consensus size: 359
30713658 AAATAAAGAA
30713668 ATACTAATTACTATCTTTGTATTAAGCAAATATTTTTCATTTCAACAACACATCAAGAATGCAGT
1 ATACTAATTACTATCTTTGTATTAAGCAAATATTTTTCATTTCAACAACACATCAAGAATGCAGT
30713733 ATGATGCACGTGTCTTGTATTAAAACCTTGAAAAAAACTTTCATTGCTACAATTATTCTCACACC
66 ATGATGCACGTGTCTTGTATTAAAACCTTGAAAAAAACTTTCATTGCTACAATTATTCTCACACC
30713798 CATCAACCATGTCGCCTTAGGGTCCCATGATTAACTAGCAAGAACATGGATTACATCCAATCAGT
131 CATCAACCATGTCGCCTTAGGGTCCCATGATTAACTAGCAAGAACATGGATTACATCCAATCAGT
30713863 TTGTGAATCTTAATTATCAAGACTCTATACAAAATAACGACCATTTAACGTTTAGCCATCTTCTT
196 TTGTGAATCTTAATTATCAAGACTCTATACAAAATAACGACCATTTAACGTTTAGCCATCTTCTT
30713928 TAGCTTAAATATCGTTTCCTCAACACCCATCATGAACATGCTTTCATTTGTGAGTCATTGTGGGA
261 TAGCTTAAATATCGTTTCCTCAACACCCATCATGAACATGCTTTCATTTGTGAGTCATTGTGGGA
30713993 CAATCTCTTTGAAAGTTATGCATGACTAGTTGTC
326 CAATCTCTTTGAAAGTTATGCATGACTAGTTGTC
30714027 ATACTAATTA-TATCTTTGTATTAAGCAAATATTTTTCATTTCAACAACACATCAAGAATGCAGT
1 ATACTAATTACTATCTTTGTATTAAGCAAATATTTTTCATTTCAACAACACATCAAGAATGCAGT
30714091 ATGATGCACGTGTCTTGTATTAAAACCTTGAAAAAAACTTTCATTGCTACAATTATTCTCACACC
66 ATGATGCACGTGTCTTGTATTAAAACCTTGAAAAAAACTTTCATTGCTACAATTATTCTCACACC
30714156 CATCAACCATGTCGCCTTAGGGTCCCATGATTAACTAGCAAGAACATGGATTACATCCAATCAGT
131 CATCAACCATGTCGCCTTAGGGTCCCATGATTAACTAGCAAGAACATGGATTACATCCAATCAGT
30714221 TTGTGAATCTTAATTATCAAGACTCTATACAAAATAACGACCATTTAACGTTTAGCCATCTTCTT
196 TTGTGAATCTTAATTATCAAGACTCTATACAAAATAACGACCATTTAACGTTTAGCCATCTTCTT
30714286 TAGCTTAAATATCGTTTCCTCAACACCCATCATGAACATGCTTTCATTTGTGAGTCATTGTGGGA
261 TAGCTTAAATATCGTTTCCTCAACACCCATCATGAACATGCTTTCATTTGTGAGTCATTGTGGGA
30714351 CAATCTCTTTGAAAGTTATGCATGACTAGTTGTC
326 CAATCTCTTTGAAAGTTATGCATGACTAGTTGTC
30714385 CTTAAAGGGA
Statistics
Matches: 358, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
358 348 0.97
359 10 0.03
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (359 bp):
ATACTAATTACTATCTTTGTATTAAGCAAATATTTTTCATTTCAACAACACATCAAGAATGCAGT
ATGATGCACGTGTCTTGTATTAAAACCTTGAAAAAAACTTTCATTGCTACAATTATTCTCACACC
CATCAACCATGTCGCCTTAGGGTCCCATGATTAACTAGCAAGAACATGGATTACATCCAATCAGT
TTGTGAATCTTAATTATCAAGACTCTATACAAAATAACGACCATTTAACGTTTAGCCATCTTCTT
TAGCTTAAATATCGTTTCCTCAACACCCATCATGAACATGCTTTCATTTGTGAGTCATTGTGGGA
CAATCTCTTTGAAAGTTATGCATGACTAGTTGTC
Found at i:30726309 original size:37 final size:38
Alignment explanation
Indices: 30726231--30726322 Score: 100
Period size: 37 Copynumber: 2.4 Consensus size: 38
30726221 TTAAATTTAA
* *
30726231 TATTAAGATAATCACTTCAATATTAAATTAATAAAATAC
1 TATTAAGATAATTA-TTAAATATTAAATTAATAAAATAC
* *
30726270 TATTAAGATAATTATTAAAT-TTAATTTAATATTAA-AC
1 TATTAAGATAATTATTAAATATTAAATTAATA-AAATAC
*
30726307 TATTAAAATAA-TATTA
1 TATTAAGATAATTATTA
30726323 TTTTTTAAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
36 5 0.11
37 22 0.47
38 7 0.15
39 13 0.28
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.41
Consensus pattern (38 bp):
TATTAAGATAATTATTAAATATTAAATTAATAAAATAC
Found at i:30728270 original size:11 final size:11
Alignment explanation
Indices: 30728254--30728278 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
30728244 CACCAATTAT
30728254 GAACATAATTG
1 GAACATAATTG
30728265 GAACATAATTG
1 GAACATAATTG
30728276 GAA
1 GAA
30728279 TAATCTCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.08, G:0.20, T:0.24
Consensus pattern (11 bp):
GAACATAATTG
Found at i:30733467 original size:34 final size:34
Alignment explanation
Indices: 30733420--30733485 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
30733410 CCTTACACTG
*
30733420 CATCTAATATAGGTAAGGTGCACTCGTGCAACTA
1 CATCTAATATAGGTAAGGCGCACTCGTGCAACTA
* * *
30733454 CATCTAATGTAGGTAAGGCGTACTTGTGCAAC
1 CATCTAATATAGGTAAGGCGCACTCGTGCAAC
30733486 GTCTTTTGAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (34 bp):
CATCTAATATAGGTAAGGCGCACTCGTGCAACTA
Found at i:30733713 original size:19 final size:19
Alignment explanation
Indices: 30733689--30733729 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
30733679 ATCTGAAAGG
*
30733689 AATTAAAAATAAAAATAAA
1 AATTAAAAACAAAAATAAA
*
30733708 AATTAAAAACAAAAATTAA
1 AATTAAAAACAAAAATAAA
30733727 AAT
1 AAT
30733730 ATTATCTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (19 bp):
AATTAAAAACAAAAATAAA
Found at i:30733714 original size:13 final size:13
Alignment explanation
Indices: 30733692--30733728 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
30733682 TGAAAGGAAT
30733692 TAAAAA-TAAAAA
1 TAAAAATTAAAAA
30733704 TAAAAATTAAAAA
1 TAAAAATTAAAAA
*
30733717 CAAAAATTAAAA
1 TAAAAATTAAAA
30733729 TATTATCTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 6 0.26
13 17 0.74
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (13 bp):
TAAAAATTAAAAA
Found at i:30733733 original size:8 final size:7
Alignment explanation
Indices: 30733689--30733733 Score: 51
Period size: 6 Copynumber: 6.7 Consensus size: 7
30733679 ATCTGAAAGG
30733689 AATTAAA
1 AATTAAA
30733696 AA-TAAA
1 AATTAAA
30733702 AA-TAAA
1 AATTAAA
30733708 AATTAAA
1 AATTAAA
*
30733715 AA-CAAA
1 AATTAAA
30733721 AATTAAA
1 AATTAAA
30733728 ATATTA
1 A-ATTA
30733734 TCTATAGGTC
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
6 17 0.52
7 12 0.36
8 4 0.12
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (7 bp):
AATTAAA
Found at i:30737203 original size:15 final size:16
Alignment explanation
Indices: 30737183--30737226 Score: 74
Period size: 15 Copynumber: 2.9 Consensus size: 16
30737173 TTAAGGACTT
30737183 AAAATAAACTAAATG-
1 AAAATAAACTAAATGA
30737198 AAAATAAAC-AAATGA
1 AAAATAAACTAAATGA
30737213 AAAATAAACTAAAT
1 AAAATAAACTAAAT
30737227 TCAAAAGAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.19
15 18 0.67
16 4 0.15
ACGTcount: A:0.70, C:0.07, G:0.05, T:0.18
Consensus pattern (16 bp):
AAAATAAACTAAATGA
Found at i:30738903 original size:29 final size:29
Alignment explanation
Indices: 30738861--30738920 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
30738851 ACTAGTTAAA
30738861 TTAATTATCATAAAATAACCTAATAGAAT
1 TTAATTATCATAAAATAACCTAATAGAAT
* *
30738890 TTAATTAATC-TAAAATATCCTAATGGAAT
1 TTAATT-ATCATAAAATAACCTAATAGAAT
30738919 TT
1 TT
30738921 CCTATTCCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 25 0.89
30 3 0.11
ACGTcount: A:0.47, C:0.10, G:0.05, T:0.38
Consensus pattern (29 bp):
TTAATTATCATAAAATAACCTAATAGAAT
Found at i:30742391 original size:45 final size:43
Alignment explanation
Indices: 30742291--30742400 Score: 120
Period size: 45 Copynumber: 2.6 Consensus size: 43
30742281 TTTTCCATTA
30742291 TGCTATTACACCTCTATT-C---CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
* * ***
30742330 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCA-TACATTCAACCAAACACAAGA-T
30742375 TGCTATTACACCTCTATTCCAATACA
1 TGCTATTACACCTCTATTCC-ATACA
30742401 CCTCTAATCC
Statistics
Matches: 57, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
44 16 0.28
45 23 0.40
46 1 0.02
ACGTcount: A:0.33, C:0.29, G:0.05, T:0.33
Consensus pattern (43 bp):
TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
Found at i:30742402 original size:16 final size:16
Alignment explanation
Indices: 30742381--30742448 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
30742371 GATTTGCTAT
*
30742381 TACACCTCTATTCCAA
1 TACACCTCTAATCCAA
*
30742397 TACACCTCTAATCCAT
1 TACACCTCTAATCCAA
30742413 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
30742429 TACACTTCTAATCCAA
1 TACACCTCTAATCCAA
30742445 TACA
1 TACA
30742449 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.35, C:0.35, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:30742622 original size:14 final size:13
Alignment explanation
Indices: 30742603--30742642 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
30742593 TTAATCAAGT
30742603 TAATGAAATATAAA
1 TAATGAAATA-AAA
30742617 TAATGAAATAAAA
1 TAATGAAATAAAA
*
30742630 TGAAGGAAATAAA
1 T-AATGAAATAAA
30742643 GAGAATGCTC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 4 0.17
14 20 0.83
ACGTcount: A:0.65, C:0.00, G:0.12, T:0.23
Consensus pattern (13 bp):
TAATGAAATAAAA
Found at i:30743473 original size:14 final size:15
Alignment explanation
Indices: 30743441--30743473 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
30743431 TCATTAATGT
*
30743441 AATTAAAAAAATTAG
1 AATTAAAAAAATTAA
30743456 AATTAAAAAAA-TAA
1 AATTAAAAAAATTAA
30743470 AATT
1 AATT
30743474 CATAGAAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (15 bp):
AATTAAAAAAATTAA
Found at i:30744109 original size:27 final size:27
Alignment explanation
Indices: 30744071--30744125 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
30744061 AAACAGAGAG
30744071 TGAATTTTTGAAACTCAGTGTGTAACT
1 TGAATTTTTGAAACTCAGTGTGTAACT
30744098 TGAATTTTTGAAACTCAGTGTGTAACT
1 TGAATTTTTGAAACTCAGTGTGTAACT
30744125 T
1 T
30744126 ATAAAATTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.29, C:0.11, G:0.18, T:0.42
Consensus pattern (27 bp):
TGAATTTTTGAAACTCAGTGTGTAACT
Found at i:30746510 original size:125 final size:125
Alignment explanation
Indices: 30746269--30746707 Score: 681
Period size: 125 Copynumber: 3.5 Consensus size: 125
30746259 GATAAAATCA
* * *
30746269 AAGCAGGATGCTTGTATCAGAAGAATTTCTAAAATCGCGCCCACGTGGAGGCGCTTTTGCTACAG
1 AAGCAGGATGCTT-TATCAGAAGAATTTCTGAAATCGCGCCCATGTGGACGCGCTTTTGCTACAG
* * *
30746334 TTGGTCCTG-AAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACCCTTC
65 TAGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCTGAGCGAATAGTATAAAAAACGCTTC
* *
30746394 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCATGTGGACGCGCTTTTGCTATAAT
1 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCATGTGGACGCGCTTTTGCTACAGT
* *
30746459 AGGTCCTGAAAAAATAATTTCGAGTTGTCGCTTCTGAGCGAATAGTATAAAAAACGCTTC
66 AGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCTGAGCGAATAGTATAAAAAACGCTTC
*
30746519 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGC-CACA--TGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCATGTGGACGCGCTTTTGCTACAGT
* * *
30746581 AGGTCCTAAAAAAATAATTTCGAGTTGACGTTTCTGAGTGAATAGTATAAAAAATGCTTC
66 AGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCTGAGCGAATAGTATAAAAAACGCTTC
* *
30746641 AAGCAGGATGCTTTATCAGAAGAATTTTTGAAATCGCGCCC-TCGTGGACGCGCTTTTGCTATAG
1 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCAT-GTGGACGCGCTTTTGCTACAG
30746705 TAG
65 TAG
30746708 CATGTTTGGG
Statistics
Matches: 288, Mismatches: 21, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
122 110 0.38
123 2 0.01
124 57 0.20
125 119 0.41
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (125 bp):
AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCATGTGGACGCGCTTTTGCTACAGT
AGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCTGAGCGAATAGTATAAAAAACGCTTC
Found at i:30749853 original size:8 final size:8
Alignment explanation
Indices: 30749840--30749864 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
30749830 TTTGTTAATA
30749840 TTAGGGTT
1 TTAGGGTT
30749848 TTAGGGTT
1 TTAGGGTT
30749856 TTAGGGTT
1 TTAGGGTT
30749864 T
1 T
30749865 GAAGTTAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.36, T:0.52
Consensus pattern (8 bp):
TTAGGGTT
Found at i:30749916 original size:21 final size:21
Alignment explanation
Indices: 30749856--30749926 Score: 90
Period size: 21 Copynumber: 3.4 Consensus size: 21
30749846 TTTTAGGGTT
* **
30749856 TTAGGG-TTTGAAGTTAAGAT
1 TTAGGGTTTTTAAGTTAAGGG
*
30749876 TTAAGGTTTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGG
30749897 TTAGGGTTTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGG
30749918 TTTAGGGTT
1 -TTAGGGTT
30749927 AGGGTTAGTG
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
20 5 0.11
21 31 0.70
22 8 0.18
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (21 bp):
TTAGGGTTTTTAAGTTAAGGG
Found at i:30749970 original size:7 final size:7
Alignment explanation
Indices: 30749958--30749997 Score: 57
Period size: 7 Copynumber: 5.9 Consensus size: 7
30749948 GTTTGTCAAT
30749958 TAAATTA
1 TAAATTA
30749965 TAAATT-
1 TAAATTA
30749971 T-AATTA
1 TAAATTA
30749977 TAAATTA
1 TAAATTA
30749984 TAAATTTA
1 TAAA-TTA
30749992 TAAATT
1 TAAATT
30749998 TTTAATAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
5 4 0.13
6 2 0.07
7 17 0.57
8 7 0.23
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (7 bp):
TAAATTA
Found at i:30749970 original size:12 final size:12
Alignment explanation
Indices: 30749955--30749997 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 12
30749945 AGGGTTTGTC
30749955 AATTAAATTATA
1 AATTAAATTATA
*
30749967 AATTTAATTATA
1 AATTAAATTATA
30749979 AATTATAAATTTATA
1 AA-T-TAAA-TTATA
30749994 AATT
1 AATT
30749998 TTTAATAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
12 13 0.50
13 2 0.08
14 4 0.15
15 7 0.27
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (12 bp):
AATTAAATTATA
Found at i:30759972 original size:43 final size:43
Alignment explanation
Indices: 30759924--30760096 Score: 346
Period size: 43 Copynumber: 4.0 Consensus size: 43
30759914 GAATTTAATC
30759924 AATAATACAATAAGAGATTTAGCATTAATAAAAGAAAATTCAT
1 AATAATACAATAAGAGATTTAGCATTAATAAAAGAAAATTCAT
30759967 AATAATACAATAAGAGATTTAGCATTAATAAAAGAAAATTCAT
1 AATAATACAATAAGAGATTTAGCATTAATAAAAGAAAATTCAT
30760010 AATAATACAATAAGAGATTTAGCATTAATAAAAGAAAATTCAT
1 AATAATACAATAAGAGATTTAGCATTAATAAAAGAAAATTCAT
30760053 AATAATACAATAAGAGATTTAGCATTAATAAAAGAAAATTCAT
1 AATAATACAATAAGAGATTTAGCATTAATAAAAGAAAATTCAT
30760096 A
1 A
30760097 GAAATCATCC
Statistics
Matches: 130, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 130 1.00
ACGTcount: A:0.56, C:0.07, G:0.09, T:0.28
Consensus pattern (43 bp):
AATAATACAATAAGAGATTTAGCATTAATAAAAGAAAATTCAT
Found at i:30764224 original size:27 final size:27
Alignment explanation
Indices: 30764187--30764296 Score: 105
Period size: 27 Copynumber: 4.1 Consensus size: 27
30764177 AAGCATTCCC
* *
30764187 TTCATAGATCGCCACAAAGGTTTCCTT
1 TTCATAAATCACCACAAAGGTTTCCTT
* ** *
30764214 TTCTTAAATCGTCACAAA-CTCTTCCTT
1 TTCATAAATCACCACAAAGGT-TTCCTT
* * *
30764241 TTCATAGATCACCACAAAGGATTCATT
1 TTCATAAATCACCACAAAGGTTTCCTT
* *
30764268 TTCATATATCACCACAAATGTTTCCTT
1 TTCATAAATCACCACAAAGGTTTCCTT
30764295 TT
1 TT
30764297 ACTAGGGTGT
Statistics
Matches: 66, Mismatches: 15, Indels: 4
0.78 0.18 0.05
Matches are distributed among these distances:
26 1 0.02
27 65 0.98
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.37
Consensus pattern (27 bp):
TTCATAAATCACCACAAAGGTTTCCTT
Found at i:30782689 original size:21 final size:21
Alignment explanation
Indices: 30782665--30782704 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
30782655 TTATAAAGTT
30782665 CTAAATCCTT-AAAGTAAAATC
1 CTAAAT-CTTAAAAGTAAAATC
*
30782686 CTAAATTTTAAAAGTAAAA
1 CTAAATCTTAAAAGTAAAA
30782705 AAAAAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.53, C:0.12, G:0.05, T:0.30
Consensus pattern (21 bp):
CTAAATCTTAAAAGTAAAATC
Found at i:30786561 original size:6 final size:6
Alignment explanation
Indices: 30786550--30786584 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
30786540 ACCAGAAATG
*
30786550 GGAAGT GGAAGT GGAAGT GGAAGT GGAAGC GGAAG
1 GGAAGT GGAAGT GGAAGT GGAAGT GGAAGT GGAAG
30786585 GGGTTACCAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.34, C:0.03, G:0.51, T:0.11
Consensus pattern (6 bp):
GGAAGT
Found at i:30789976 original size:20 final size:19
Alignment explanation
Indices: 30789948--30789989 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
30789938 TTTATCAAGT
30789948 AATATTTTAAGTTATTTGA
1 AATATTTTAAGTTATTTGA
* *
30789967 AATATGTTTACGTTATTTTA
1 AATAT-TTTAAGTTATTTGA
30789987 AAT
1 AAT
30789990 TATATAAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.36, C:0.02, G:0.10, T:0.52
Consensus pattern (19 bp):
AATATTTTAAGTTATTTGA
Found at i:30792860 original size:43 final size:42
Alignment explanation
Indices: 30792747--30792861 Score: 101
Period size: 43 Copynumber: 2.6 Consensus size: 42
30792737 TGTGATTTTG
* *
30792747 TGTAAGACCACGTCTGGGATGTTGGCATCAATTTGAGATTTACG
1 TGTAAGA-CACGTCTGGGACGTTGGCATCAATTT-AGATTTACA
* *
30792791 TGTAAGACCCAGTCTAGGACAG-TGGCATCTATATTT-GA-TTACA
1 TGTAAGACAC-GTCTGGGAC-GTTGGCATC-A-ATTTAGATTTACA
*
30792834 TGTAAGACTTCGTCTGGGACGTTGGCAT
1 TGTAAGAC-ACGTCTGGGACGTTGGCAT
30792862 TGTACGAGCT
Statistics
Matches: 59, Mismatches: 6, Indels: 13
0.76 0.08 0.17
Matches are distributed among these distances:
42 1 0.02
43 28 0.47
44 24 0.41
45 2 0.03
46 4 0.07
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (42 bp):
TGTAAGACACGTCTGGGACGTTGGCATCAATTTAGATTTACA
Found at i:30798887 original size:16 final size:16
Alignment explanation
Indices: 30798866--30798905 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
30798856 ACCTATTTCC
30798866 TCGATTTGGAAGTGTT
1 TCGATTTGGAAGTGTT
30798882 TCGATTTGGAAGTGTT
1 TCGATTTGGAAGTGTT
*
30798898 TCAATTTG
1 TCGATTTG
30798906 AAAAAAGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.20, C:0.07, G:0.28, T:0.45
Consensus pattern (16 bp):
TCGATTTGGAAGTGTT
Found at i:30806826 original size:27 final size:27
Alignment explanation
Indices: 30806756--30806827 Score: 99
Period size: 27 Copynumber: 2.7 Consensus size: 27
30806746 TTTATTCTAG
*
30806756 TAAAATTTTGACGACTTTACCCCCTAA
1 TAAAATTTTGACGATTTTACCCCCTAA
* *
30806783 TAAAATTTTAACAATTTTACCCCCTAA
1 TAAAATTTTGACGATTTTACCCCCTAA
* *
30806810 TAATATTTTGATGATTTT
1 TAAAATTTTGACGATTTT
30806828 TCACCAAAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.35, C:0.18, G:0.06, T:0.42
Consensus pattern (27 bp):
TAAAATTTTGACGATTTTACCCCCTAA
Found at i:30807429 original size:16 final size:16
Alignment explanation
Indices: 30807410--30807441 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
30807400 GAGTGCCCTT
30807410 ATATTACTTATTATTA
1 ATATTACTTATTATTA
30807426 ATATTACTTATTATTA
1 ATATTACTTATTATTA
30807442 TTTTTTACAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (16 bp):
ATATTACTTATTATTA
Found at i:30812372 original size:18 final size:18
Alignment explanation
Indices: 30812349--30812386 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
30812339 TGAATGTTTC
30812349 TCATTTC-TCATTTTCTAT
1 TCATTTCGTCATTTT-TAT
30812367 TCATTTCGTTCATTTTTAT
1 TCATTTCG-TCATTTTTAT
30812386 T
1 T
30812387 TAAACATACA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
19 4 0.22
20 7 0.39
ACGTcount: A:0.16, C:0.18, G:0.03, T:0.63
Consensus pattern (18 bp):
TCATTTCGTCATTTTTAT
Found at i:30818520 original size:23 final size:23
Alignment explanation
Indices: 30818477--30818576 Score: 110
Period size: 23 Copynumber: 4.3 Consensus size: 23
30818467 CATATTATGG
30818477 CACAAAGGCCAAACAGAATACGC
1 CACAAAGGCCAAACAGAATACGC
* * * *
30818500 CATAAAGGCTAAATAGGATACGC
1 CACAAAGGCCAAACAGAATACGC
* *
30818523 CACAAAGGCTAAACAAAATACGC
1 CACAAAGGCCAAACAGAATACGC
** * *
30818546 CACAAAGGCCAAATGGAGTACGA
1 CACAAAGGCCAAACAGAATACGC
30818569 CACAAAGG
1 CACAAAGG
30818577 TTCTACTTGG
Statistics
Matches: 63, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 63 1.00
ACGTcount: A:0.47, C:0.24, G:0.20, T:0.09
Consensus pattern (23 bp):
CACAAAGGCCAAACAGAATACGC
Found at i:30818529 original size:46 final size:46
Alignment explanation
Indices: 30818477--30818576 Score: 139
Period size: 46 Copynumber: 2.2 Consensus size: 46
30818467 CATATTATGG
* * * *
30818477 CACAAAGGCCAAACAGAATACGCCATAAAGGCTAAATAGGA-TACGC
1 CACAAAGGCCAAACAAAATACGCCACAAAGGCCAAAT-GGAGTACGA
*
30818523 CACAAAGGCTAAACAAAATACGCCACAAAGGCCAAATGGAGTACGA
1 CACAAAGGCCAAACAAAATACGCCACAAAGGCCAAATGGAGTACGA
30818569 CACAAAGG
1 CACAAAGG
30818577 TTCTACTTGG
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
45 3 0.06
46 45 0.94
ACGTcount: A:0.47, C:0.24, G:0.20, T:0.09
Consensus pattern (46 bp):
CACAAAGGCCAAACAAAATACGCCACAAAGGCCAAATGGAGTACGA
Found at i:30820358 original size:26 final size:26
Alignment explanation
Indices: 30820321--30820370 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
30820311 CAATAATTCA
30820321 GGGAATCAGCACTTAGCAACCCCTCG
1 GGGAATCAGCACTTAGCAACCCCTCG
* *
30820347 GGGAATCTGCACTTAGCGACCCCT
1 GGGAATCAGCACTTAGCAACCCCT
30820371 TTACATTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.34, G:0.24, T:0.18
Consensus pattern (26 bp):
GGGAATCAGCACTTAGCAACCCCTCG
Found at i:30832921 original size:20 final size:22
Alignment explanation
Indices: 30832881--30832921 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
30832871 TAATAAAACA
*
30832881 ATATTTTTAATTGATATTTTAT
1 ATATTTTTAATTGATAATTTAT
30832903 ATATTTTTAATT-A-AATTTA
1 ATATTTTTAATTGATAATTTA
30832922 AATTTAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 1 0.06
22 12 0.67
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
ATATTTTTAATTGATAATTTAT
Found at i:30839452 original size:16 final size:16
Alignment explanation
Indices: 30839431--30839469 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
30839421 AATTATGGAG
*
30839431 ATATATGAAAGCATGT
1 ATATATAAAAGCATGT
*
30839447 ATATATAAAAGTATGT
1 ATATATAAAAGCATGT
30839463 ATATATA
1 ATATATA
30839470 TGTATACGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.49, C:0.03, G:0.13, T:0.36
Consensus pattern (16 bp):
ATATATAAAAGCATGT
Found at i:30839971 original size:21 final size:23
Alignment explanation
Indices: 30839947--30839989 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
30839937 TTCCGGGTAA
30839947 AATTCAAA-AG-ATTAAAAAACT
1 AATTCAAAGAGCATTAAAAAACT
*
30839968 AATTTAAAGAGCATTAAAAAAC
1 AATTCAAAGAGCATTAAAAAAC
30839990 GGAAGGACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 2 0.11
23 10 0.53
ACGTcount: A:0.60, C:0.09, G:0.07, T:0.23
Consensus pattern (23 bp):
AATTCAAAGAGCATTAAAAAACT
Found at i:30841310 original size:44 final size:44
Alignment explanation
Indices: 30841258--30841589 Score: 161
Period size: 44 Copynumber: 7.5 Consensus size: 44
30841248 CTTTGATCTG
*
30841258 CTCCACTACTGCTTAGGGTGATAGAATCTACAATCTTTGACCTA
1 CTCCACTACTGCTTAGGGTGATAGAATCTACAATCTTCGACCTA
* * * * ** *
30841302 TTCCACTACTGCTTAGAGTGATAGGA-CT--AATGGTTTAAATCTGCTT
1 CTCCACTACTGCTTAGGGTGATAGAATCTACAAT--CTTCGA-C--CTA
* * * * *
30841348 CTCCACTA-T-CTT-GGGAAGATAAGATTC-ACCATCTTCGATCTG
1 CTCCACTACTGCTTAGGG-TGAT-AGAATCTACAATCTTCGACCTA
30841390 CTCCACTACTGCTTAGGGTGATAGAATCTACAATCTTCGACCTA
1 CTCCACTACTGCTTAGGGTGATAGAATCTACAATCTTCGACCTA
* * * ** * *
30841434 CTCCACTACTGCTTAGGGAGACAGGA-CT--AATGGCTTAAATATGCTT
1 CTCCACTACTGCTTAGGGTGATAGAATCTACAAT--CTT--CGA-CCTA
** * * ** *
30841480 CTCCACTA-T-CTT-GAGAAGATAAGATTC-ACCATCTTCGATTTG
1 CTCCACTACTGCTTAG-GGTGAT-AGAATCTACAATCTTCGACCTA
* * *
30841522 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGTGATAGAATCTACAATCTTCGACCTA
*
30841566 CTCCACTACTGCTTAGGGAGATAG
1 CTCCACTACTGCTTAGGGTGATAG
30841590 GACTTGCTAT
Statistics
Matches: 208, Mismatches: 52, Indels: 56
0.66 0.16 0.18
Matches are distributed among these distances:
41 6 0.03
42 19 0.09
43 26 0.12
44 115 0.55
45 17 0.08
46 21 0.10
47 4 0.02
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (44 bp):
CTCCACTACTGCTTAGGGTGATAGAATCTACAATCTTCGACCTA
Found at i:30841373 original size:132 final size:132
Alignment explanation
Indices: 30841221--30841593 Score: 620
Period size: 132 Copynumber: 2.8 Consensus size: 132
30841211 TACTTCCCTT
* *
30841221 CTATCTTGGGAAGATAAGATTCACCGTCTTTGATCTGCTCCACTACTGCTTAGGGTGATAGAATC
1 CTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGATAGAATC
* * * * * *
30841286 TACAATCTTTGACCTATTCCACTACTGCTTAGAGTGATAGGACTAATGGTTTAAATCTGCTTCTC
66 TACAATCTTCGACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATATGCTTCTC
30841351 CA
131 CA
30841353 CTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGATAGAATC
1 CTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGATAGAATC
*
30841418 TACAATCTTCGACCTACTCCACTACTGCTTAGGGAGACAGGACTAATGGCTTAAATATGCTTCTC
66 TACAATCTTCGACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATATGCTTCTC
30841483 CA
131 CA
* * *
30841485 CTATCTTGAGAAGATAAGATTCACCATCTTCGATTTGCTCCACTACTGCTTAGGGTGACAGAATC
1 CTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGATAGAATC
* *
30841550 TGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACT
66 TACAATCTTCGACCTACTCCACTACTGCTTAGGGAGATAGGACT
30841594 TGCTATTTTT
Statistics
Matches: 226, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 226 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (132 bp):
CTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGATAGAATC
TACAATCTTCGACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATATGCTTCTC
CA
Found at i:30847324 original size:16 final size:16
Alignment explanation
Indices: 30847303--30847341 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
30847293 AATTATGGAA
30847303 ATATATAAAAACATGT
1 ATATATAAAAACATGT
**
30847319 ATATATAAAAGTATGT
1 ATATATAAAAACATGT
30847335 ATATATA
1 ATATATA
30847342 TGTATACTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.54, C:0.03, G:0.08, T:0.36
Consensus pattern (16 bp):
ATATATAAAAACATGT
Found at i:30847721 original size:12 final size:12
Alignment explanation
Indices: 30847706--30847735 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
30847696 GGGTACAAGT
30847706 ATATATATAAAA
1 ATATATATAAAA
30847718 ATATATATAAAA
1 ATATATATAAAA
30847730 A-ATATA
1 ATATATA
30847736 CGTATATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.28
12 13 0.72
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
ATATATATAAAA
Done.