Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47972186
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2603476 characters in sequence are not A, C, G, or T
File 93 of 145
Found at i:31914335 original size:5 final size:5
Alignment explanation
Indices: 31914322--31914360 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
31914312 AGATTTTTTC
* * *
31914322 AAAAG AAAAT AAAAT CAAAG AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
31914361 GATAATATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.79, C:0.03, G:0.05, T:0.13
Consensus pattern (5 bp):
AAAAT
Found at i:31914350 original size:20 final size:20
Alignment explanation
Indices: 31914322--31914367 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
31914312 AGATTTTTTC
* *
31914322 AAAAGAAAATAAAATCAAAG
1 AAAATAAAATAAAATAAAAG
31914342 AAAATAAAATAAAATAAAAG
1 AAAATAAAATAAAATAAAAG
*
31914362 ATAATA
1 AAAATA
31914368 TTTCCCCCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.76, C:0.02, G:0.07, T:0.15
Consensus pattern (20 bp):
AAAATAAAATAAAATAAAAG
Found at i:31914367 original size:15 final size:15
Alignment explanation
Indices: 31914322--31914360 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
31914312 AGATTTTTTC
31914322 AAAAGAAAATAAAAT
1 AAAAGAAAATAAAAT
*
31914337 CAAAGAAAATAAAAT
1 AAAAGAAAATAAAAT
*
31914352 AAAATAAAA
1 AAAAGAAAA
31914361 GATAATATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.79, C:0.03, G:0.05, T:0.13
Consensus pattern (15 bp):
AAAAGAAAATAAAAT
Found at i:31924641 original size:40 final size:41
Alignment explanation
Indices: 31924594--31924674 Score: 105
Period size: 40 Copynumber: 2.0 Consensus size: 41
31924584 GTAAGAATTT
*
31924594 GGGTCTTAGCCCATC-TCAGTA-CAGTATCAAAT-ATGCAGTA
1 GGGTCTTAGCCCATCAT-AGTATCAGTAGC-AATCATGCAGTA
*
31924634 GGGTCTTATCCCATCATAGTATCAGTAGCAATCATGCAGTA
1 GGGTCTTAGCCCATCATAGTATCAGTAGCAATCATGCAGTA
31924675 TTCAGTAGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
40 21 0.58
41 15 0.42
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (41 bp):
GGGTCTTAGCCCATCATAGTATCAGTAGCAATCATGCAGTA
Found at i:31928044 original size:58 final size:58
Alignment explanation
Indices: 31927974--31928096 Score: 147
Period size: 58 Copynumber: 2.1 Consensus size: 58
31927964 AATCACCAAC
* * * * *
31927974 TATACTTAAGAAAAATTTGAAATATAACCAACTAGAGATGTGAATCTGTGAGCTGTCT
1 TATACTTAAGAAAAATCTGAAAGATAACCAAATAGAGATGTGAATCTGCGAGCTATCT
* * * * * *
31928032 TATACTTAAGAAAACTCTGAGAGATAACCAAATGGGGATGTGAATTTGCGAGCTATTT
1 TATACTTAAGAAAAATCTGAAAGATAACCAAATAGAGATGTGAATCTGCGAGCTATCT
31928090 TATACTT
1 TATACTT
31928097 CCTTAAAATT
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
58 54 1.00
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.32
Consensus pattern (58 bp):
TATACTTAAGAAAAATCTGAAAGATAACCAAATAGAGATGTGAATCTGCGAGCTATCT
Found at i:31928342 original size:70 final size:70
Alignment explanation
Indices: 31928165--31928611 Score: 443
Period size: 70 Copynumber: 6.4 Consensus size: 70
31928155 AAGGTTGTAG
* *** * * * *
31928165 TTTTTATCCTGCAAGCCTTAGTATGACAGCTTTAAGTTTTGCTCTCGCTAACTATGTTGAAGGCT
1 TTTTTATCCTGCGAGCCTTAGTATGACAGCTGGGAGCTTTGCTCTCGCTAACTGTATTGGAGGCT
31928230 GTGG-
66 GTGGT
* * ** *
31928234 TTTTTATCTTGTGAGCCTTAACATGACAGCTAGGAGCTTTGCTCTCAG-TAACTGTATTGGAGGC
1 TTTTTATCCTGCGAGCCTTAGTATGACAGCTGGGAGCTTTGCTCTC-GCTAACTGTATTGGAGGC
*
31928298 T-TCAGT
65 TGT-GGT
* * * * *
31928304 TTTTTATCTTGCAAGCCTTAGTATGATAGCTGGGAGCTTTGATCTCGCTAACTGTATTTGAGGCT
1 TTTTTATCCTGCGAGCCTTAGTATGACAGCTGGGAGCTTTGCTCTCGCTAACTGTATTGGAGGCT
*
31928369 ATGGT
66 GTGGT
* * * * * * *
31928374 TTTTTGTCCTACGAGCCTTAGCATGACAGCTGGGAGCTTTGCTCTCGCTAACTATGTTAGAGGTT
1 TTTTTATCCTGCGAGCCTTAGTATGACAGCTGGGAGCTTTGCTCTCGCTAACTGTATTGGAGGCT
****
31928439 ACAAT
66 GTGGT
* * * * * *
31928444 TTTTTATCCTGCGAGCCTTAGTATGACAGTTGGGAGCTTTGTTATCACTAACTGTGTTGGAGGTT
1 TTTTTATCCTGCGAGCCTTAGTATGACAGCTGGGAGCTTTGCTCTCGCTAACTGTATTGGAGGCT
31928509 GTGGT
66 GTGGT
* * * ** * *
31928514 TTTTTATCCTGCGAGTCTTAATATGATAATTGGGAGCTTTACTCTTGCTAACTGTGA-TGGAGGC
1 TTTTTATCCTGCGAGCCTTAGTATGACAGCTGGGAGCTTTGCTCTCGCTAACTGT-ATTGGAGGC
31928578 TGTGGT
65 TGTGGT
31928584 TTTTTATCCTGCGAGCCTTAGTATGACA
1 TTTTTATCCTGCGAGCCTTAGTATGACA
31928612 CAAATGTTAT
Statistics
Matches: 309, Mismatches: 63, Indels: 11
0.81 0.16 0.03
Matches are distributed among these distances:
68 1 0.00
69 53 0.17
70 254 0.82
71 1 0.00
ACGTcount: A:0.20, C:0.17, G:0.24, T:0.38
Consensus pattern (70 bp):
TTTTTATCCTGCGAGCCTTAGTATGACAGCTGGGAGCTTTGCTCTCGCTAACTGTATTGGAGGCT
GTGGT
Found at i:31928484 original size:210 final size:210
Alignment explanation
Indices: 31928165--31928611 Score: 499
Period size: 210 Copynumber: 2.1 Consensus size: 210
31928155 AAGGTTGTAG
* * * *** * *
31928165 TTTTTATCCTGCAAGCCTTAGTATGACAGCTTTAAGTTTTGCTCTCGCTAACTATGTT-GAAGGC
1 TTTTTATCCTACGAGCCTTAGCATGACAGCTGGGAGCTTTGCTCTCGCTAACTATGTTAG-AGGT
**** * * * *
31928229 T-GTGGTTTTTATCTTGTGAGCCTTAACATGACAGCTAGGAGCTTTGCTCTCAGTAACTGTATTG
65 TACAATTTTTTATCCTGCGAGCCTTAACATGACAGCTAGGAGCTTTGCTATCACTAACTGTATTG
* * *
31928293 GAGGCTT-CAGTTTTTTATCTTGCAAGCCTTAGTATGATAGCTGGGAGCTTTGA-TCTCGCTAAC
130 GAGG-TTGCAGTTTTTTATCCTGCAAGCCTTAATATGATAACTGGGAGCTTT-ACTCTCGCTAAC
*
31928356 TGT-ATTTGAGGCTATGGT
193 TGTGA-TGGAGGCTATGGT
*
31928374 TTTTTGTCCTACGAGCCTTAGCATGACAGCTGGGAGCTTTGCTCTCGCTAACTATGTTAGAGGTT
1 TTTTTATCCTACGAGCCTTAGCATGACAGCTGGGAGCTTTGCTCTCGCTAACTATGTTAGAGGTT
** * * * *
31928439 ACAATTTTTTATCCTGCGAGCCTTAGTATGACAGTTGGGAGCTTTGTTATCACTAACTGTGTTGG
66 ACAATTTTTTATCCTGCGAGCCTTAACATGACAGCTAGGAGCTTTGCTATCACTAACTGTATTGG
** * * * *
31928504 AGGTTGTGGTTTTTTATCCTGCGAGTCTTAATATGATAATTGGGAGCTTTACTCTTGCTAACTGT
131 AGGTTGCAGTTTTTTATCCTGCAAGCCTTAATATGATAACTGGGAGCTTTACTCTCGCTAACTGT
*
31928569 GATGGAGGCTGTGGT
196 GATGGAGGCTATGGT
* *
31928584 TTTTTATCCTGCGAGCCTTAGTATGACA
1 TTTTTATCCTACGAGCCTTAGCATGACA
31928612 CAAATGTTAT
Statistics
Matches: 196, Mismatches: 37, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
209 57 0.29
210 138 0.70
211 1 0.01
ACGTcount: A:0.20, C:0.17, G:0.24, T:0.38
Consensus pattern (210 bp):
TTTTTATCCTACGAGCCTTAGCATGACAGCTGGGAGCTTTGCTCTCGCTAACTATGTTAGAGGTT
ACAATTTTTTATCCTGCGAGCCTTAACATGACAGCTAGGAGCTTTGCTATCACTAACTGTATTGG
AGGTTGCAGTTTTTTATCCTGCAAGCCTTAATATGATAACTGGGAGCTTTACTCTCGCTAACTGT
GATGGAGGCTATGGT
Found at i:31931931 original size:109 final size:109
Alignment explanation
Indices: 31931740--31931958 Score: 330
Period size: 109 Copynumber: 2.0 Consensus size: 109
31931730 AGTATCCATG
* *
31931740 AAGCTCGTGAACTTGTGACCTGAAGAGGCATCCACTAATTAGTCAATCAAGGGTAGGGGAAAACT
1 AAGCTAGTGAACTTGTGACCTGAAGAGGCATCCACTAATCAGTCAATCAAGGGTAGGGGAAAACT
* * *
31931805 GTCATTTGTCGTTTAAGTCGATACACATTCTTCATTTGTTGTTT
66 GTCATTTGTCATTTAAGTCGATACACATTCTCCATTTGTCGTTT
* **
31931849 AAGCTAGTGAACTTGTGACCTGAAGAGGCATCCACTAATCGGTCAATTGAGGGTAGGGGAAAACT
1 AAGCTAGTGAACTTGTGACCTGAAGAGGCATCCACTAATCAGTCAATCAAGGGTAGGGGAAAACT
* * **
31931914 GTTATTTTTCATTTAAGTTTATACACATTCTCCATTTGTCGTTT
66 GTCATTTGTCATTTAAGTCGATACACATTCTCCATTTGTCGTTT
31931958 A
1 A
31931959 CCTTCTTCAC
Statistics
Matches: 98, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
109 98 1.00
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (109 bp):
AAGCTAGTGAACTTGTGACCTGAAGAGGCATCCACTAATCAGTCAATCAAGGGTAGGGGAAAACT
GTCATTTGTCATTTAAGTCGATACACATTCTCCATTTGTCGTTT
Found at i:31934770 original size:26 final size:26
Alignment explanation
Indices: 31934758--31934808 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
31934748 GCGAGCTAGG
31934758 TCCTTGGCTTTGCCTCACGAACTGGA
1 TCCTTGGCTTTGCCTCACGAACTGGA
* **
31934784 TCTTTGGCTTTGCCTCGGGAACTGG
1 TCCTTGGCTTTGCCTCACGAACTGG
31934809 GTTAGAGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.12, C:0.27, G:0.27, T:0.33
Consensus pattern (26 bp):
TCCTTGGCTTTGCCTCACGAACTGGA
Found at i:31939846 original size:55 final size:56
Alignment explanation
Indices: 31939765--31939879 Score: 187
Period size: 55 Copynumber: 2.1 Consensus size: 56
31939755 TAGTATGTTT
* *
31939765 TTTTTAATGGCGCCTATCTGACAGGCGCCAATGAATTTTTTATATT-ATTTTTTTC
1 TTTTTAATCGAGCCTATCTGACAGGCGCCAATGAATTTTTTATATTAATTTTTTTC
* *
31939820 TTTTTAATCGAGCCTATCTGATAGGCGTCAATGAATTTTTTATATTAATTTTTTTC
1 TTTTTAATCGAGCCTATCTGACAGGCGCCAATGAATTTTTTATATTAATTTTTTTC
31939876 TTTT
1 TTTT
31939880 AATAAAATAT
Statistics
Matches: 55, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
55 42 0.76
56 13 0.24
ACGTcount: A:0.23, C:0.14, G:0.13, T:0.50
Consensus pattern (56 bp):
TTTTTAATCGAGCCTATCTGACAGGCGCCAATGAATTTTTTATATTAATTTTTTTC
Found at i:31940314 original size:20 final size:20
Alignment explanation
Indices: 31940291--31940328 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
31940281 ATTTTTTTGC
31940291 ATTTCGAAATTGTTTTAAGA
1 ATTTCGAAATTGTTTTAAGA
* *
31940311 ATTTTGAAATTTTTTTAA
1 ATTTCGAAATTGTTTTAA
31940329 CAGATCTAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
ATTTCGAAATTGTTTTAAGA
Found at i:31943042 original size:49 final size:49
Alignment explanation
Indices: 31942987--31943082 Score: 165
Period size: 49 Copynumber: 2.0 Consensus size: 49
31942977 TACTAAAACT
* * *
31942987 AAACACAACAATTTATAACTTAATCCTAAATTACTAATAAATTAATTAC
1 AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTAC
31943036 AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATT
1 AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATT
31943083 TTAAAGTAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.31
Consensus pattern (49 bp):
AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTAC
Found at i:31943216 original size:17 final size:18
Alignment explanation
Indices: 31943194--31943246 Score: 63
Period size: 17 Copynumber: 2.8 Consensus size: 18
31943184 CATTACCTTT
31943194 TTTTCTTCTTCTTCT-TC
1 TTTTCTTCTTCTTCTCTC
*
31943211 TTTTCTTCTCCTTTCTCTC
1 TTTTCTTCTTC-TTCTCTC
31943230 TTTTCTTTCTCTCTTCT
1 TTTTC-TTCT-TCTTCT
31943247 GGATGGGGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
17 10 0.33
18 4 0.13
19 7 0.23
20 8 0.27
21 1 0.03
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTTCTTCTTCTTCTCTC
Found at i:31943219 original size:20 final size:21
Alignment explanation
Indices: 31943190--31943246 Score: 57
Period size: 20 Copynumber: 2.8 Consensus size: 21
31943180 AATACATTAC
*
31943190 CTTTTTTTCTTCTTCTTCT-T
1 CTTTTCTTCTTCTTCTTCTCT
*
31943210 CTTTTCTTC-TCCT-TTCTCT
1 CTTTTCTTCTTCTTCTTCTCT
31943229 CTTTTCTTTCTCTCTTCT
1 CTTTTC-TTCT-TCTTCT
31943247 GGATGGGGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
18 4 0.14
19 10 0.34
20 11 0.38
22 3 0.10
23 1 0.03
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (21 bp):
CTTTTCTTCTTCTTCTTCTCT
Found at i:31943426 original size:27 final size:27
Alignment explanation
Indices: 31943388--31943449 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
31943378 TCTACCTGTT
*
31943388 AGGCACGATTAGTCATACCTATCTAAC
1 AGGCTCGATTAGTCATACCTATCTAAC
* *
31943415 AGGCTCGATTAGTCGTACCTATCTAAT
1 AGGCTCGATTAGTCATACCTATCTAAC
31943442 AGGCTCGA
1 AGGCTCGA
31943450 CCCGTTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.27
Consensus pattern (27 bp):
AGGCTCGATTAGTCATACCTATCTAAC
Found at i:31943572 original size:24 final size:24
Alignment explanation
Indices: 31943507--31943572 Score: 73
Period size: 24 Copynumber: 2.8 Consensus size: 24
31943497 ATATATATTT
* *
31943507 AAATA-TTTTTAATAAAAATAAAA
1 AAATATTTTTTAATATAAACAAAA
* *
31943530 AAATAATATTTT-ATTTAAACAAAA
1 AAAT-ATTTTTTAATATAAACAAAA
31943554 AAATATTTTTTAATATAAA
1 AAATATTTTTTAATATAAA
31943573 AAATTAATTC
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
23 10 0.29
24 20 0.59
25 4 0.12
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (24 bp):
AAATATTTTTTAATATAAACAAAA
Found at i:31943618 original size:58 final size:58
Alignment explanation
Indices: 31943550--31943731 Score: 248
Period size: 58 Copynumber: 3.2 Consensus size: 58
31943540 TTATTTAAAC
*
31943550 AAAAAA-ATATTTTTTAATATAAAAAATTAATTCGCGCCTGTCAGATAGGCACGATTA
1 AAAAAATATATTTTTTAATATAAAAAATTGATTCGCGCCTGTCAGATAGGCACGATTA
* * *
31943607 AAAAAATATATTTTTTAATATAAAAAATTGATTCGCGTCTGTCAAATAGGCGCGATT-
1 AAAAAATATATTTTTTAATATAAAAAATTGATTCGCGCCTGTCAGATAGGCACGATTA
* *
31943664 --AAAAT-TTTTTTGTTAATATAAAAAATTGATTGGCGCCTGTCAGATAGGCACGATTA
1 AAAAAATATATTTT-TTAATATAAAAAATTGATTCGCGCCTGTCAGATAGGCACGATTA
*
31943720 CAAAAAACATAT
1 -AAAAAATATAT
31943732 CATTTTTGTA
Statistics
Matches: 107, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
54 5 0.05
55 44 0.41
57 6 0.06
58 46 0.43
59 4 0.04
60 2 0.02
ACGTcount: A:0.42, C:0.12, G:0.14, T:0.33
Consensus pattern (58 bp):
AAAAAATATATTTTTTAATATAAAAAATTGATTCGCGCCTGTCAGATAGGCACGATTA
Found at i:31943871 original size:38 final size:40
Alignment explanation
Indices: 31943810--31943887 Score: 133
Period size: 38 Copynumber: 2.0 Consensus size: 40
31943800 AAACCCCCAA
31943810 GTTGATATAAAAAAACATTAAATGAGTTAACAACAACTAT
1 GTTGATATAAAAAAACATTAAATGAGTTAACAACAACTAT
*
31943850 GTTGATAT-AAAAAA-ATTAAATGAGTTAACAGCAACTAT
1 GTTGATATAAAAAAACATTAAATGAGTTAACAACAACTAT
31943888 ATGATTAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
38 23 0.62
39 6 0.16
40 8 0.22
ACGTcount: A:0.51, C:0.09, G:0.12, T:0.28
Consensus pattern (40 bp):
GTTGATATAAAAAAACATTAAATGAGTTAACAACAACTAT
Found at i:31944343 original size:21 final size:21
Alignment explanation
Indices: 31944317--31944360 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
31944307 TTAAATTTCG
31944317 AATATAATATTGAAGTCTTAC
1 AATATAATATTGAAGTCTTAC
31944338 AATATAATATTGAAGTCTTAC
1 AATATAATATTGAAGTCTTAC
31944359 AA
1 AA
31944361 ATTTAAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.45, C:0.09, G:0.09, T:0.36
Consensus pattern (21 bp):
AATATAATATTGAAGTCTTAC
Found at i:31944744 original size:14 final size:15
Alignment explanation
Indices: 31944721--31944755 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
31944711 ATTTATATTT
*
31944721 AAATATTTTTAGTAA
1 AAATATTTTTAATAA
31944736 AAATATTTTTAATAA
1 AAATATTTTTAATAA
31944751 AAATA
1 AAATA
31944756 AAAAAATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (15 bp):
AAATATTTTTAATAA
Found at i:31956125 original size:98 final size:98
Alignment explanation
Indices: 31956001--31956295 Score: 554
Period size: 98 Copynumber: 3.0 Consensus size: 98
31955991 TTAAAAATAA
* * * *
31956001 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTAGGATTTTAGAGGAATCGTGCCATAACGTATTGGGTGTGATTTC
31956066 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
31956099 TAAAGGAAATATTCCGAGTTTAGGATTTTAGAGGAATCGTGCCATAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTAGGATTTTAGAGGAATCGTGCCATAACGTATTGGGTGTGATTTC
31956164 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
31956197 TAAAGGAAATATTCCGAGTTTAGGATTTTAGAGGAATCGTGCCATAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTAGGATTTTAGAGGAATCGTGCCATAACGTATTGGGTGTGATTTC
31956262 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
31956295 T
1 T
31956296 TTTATTGTAC
Statistics
Matches: 193, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
98 193 1.00
ACGTcount: A:0.29, C:0.09, G:0.24, T:0.37
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTAGGATTTTAGAGGAATCGTGCCATAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:31966916 original size:45 final size:45
Alignment explanation
Indices: 31966852--31966974 Score: 153
Period size: 45 Copynumber: 2.7 Consensus size: 45
31966842 AATCGCATCT
31966852 AGTCTTATCTCCCTGAAGTTGCGGTGGAGCAGACT-AAGCAAAGCA
1 AGTCTTATCTCCCTGAAGTTGCGGTGGAGCAGACTGAAG-AAAGCA
* * **
31966897 AGTCTTATC-CTCCTAAAGTTGCGGT-GAGGCAGGCTGAAGATGGCA
1 AGTCTTATCTC-CCTGAAGTTGCGGTGGA-GCAGACTGAAGAAAGCA
*
31966942 AATCTTATCTCCCTGAAGTTGCGGTGGAGCAGA
1 AGTCTTATCTCCCTGAAGTTGCGGTGGAGCAGA
31966975 TTAAAGCCGA
Statistics
Matches: 66, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
44 3 0.05
45 57 0.86
46 6 0.09
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (45 bp):
AGTCTTATCTCCCTGAAGTTGCGGTGGAGCAGACTGAAGAAAGCA
Found at i:31967153 original size:45 final size:44
Alignment explanation
Indices: 31967052--31967349 Score: 172
Period size: 45 Copynumber: 6.8 Consensus size: 44
31967042 GCATCTAGTT
*
31967052 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAAGCAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAAGCAAATC
* **
31967097 GTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAATG-TGGCAAATC
1 TTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AA-GAAAGCAAATC
* *
31967142 TTATCTCCCTGAAGTTGCAGTGGAACAGA-T--TAAAGCCGACAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAAG-C-A-AATC
* * * * *
31967186 CTATCTCCCTGAAGTTGCAGTGGAGCGGATTATA-ACCA-CAGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTA-AGA-AAGCAAATC
* * * * * * * *
31967230 TTATCTCTCTGAAGTTGCAGTAGAGTAGA-T--CACATCGAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAAGCAAATC
* *
31967271 TTAATCTCCCTGAAGTTGCAGTGGAGTAGACTCAAGAAAGCAAGTC
1 TT-ATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGAAAGCAAATC
* *
31967317 TTATC-CCCTTGAAATTGCTGTGG-GACAGACTAA
1 TTATCTCCC-TGAAGTTGCAGTGGAG-CAGACTAA
31967350 ACATACCAAT
Statistics
Matches: 198, Mismatches: 31, Indels: 49
0.71 0.11 0.18
Matches are distributed among these distances:
40 2 0.01
41 7 0.04
42 26 0.13
43 3 0.02
44 67 0.34
45 75 0.38
46 15 0.08
47 2 0.01
48 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.26
Consensus pattern (44 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAAGCAAATC
Found at i:31967201 original size:44 final size:43
Alignment explanation
Indices: 31967138--31967250 Score: 156
Period size: 44 Copynumber: 2.6 Consensus size: 43
31967128 GAATGTGGCA
31967138 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTA-AAGCCGAC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTATAA-CC-AC
* * *
31967182 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTATAACCAC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTATAACCAC
*
31967225 AGATCTTATCTCTCTGAAGTTGCAGT
1 A-ATCTTATCTCCCTGAAGTTGCAGT
31967251 AGAGTAGATC
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
43 3 0.05
44 57 0.92
45 2 0.03
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTATAACCAC
Found at i:31970388 original size:16 final size:16
Alignment explanation
Indices: 31970369--31970413 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 16
31970359 TAAAATTTAT
31970369 AATTTTTAAAAATAAA
1 AATTTTTAAAAATAAA
31970385 AATTTTTGAAAAATAAA
1 AATTTTT-AAAAATAAA
31970402 AACTCTTTTAAA
1 AA-T-TTTTAAA
31970414 TTAAAAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
16 7 0.27
17 11 0.42
18 4 0.15
19 4 0.15
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (16 bp):
AATTTTTAAAAATAAA
Found at i:31978524 original size:21 final size:20
Alignment explanation
Indices: 31978498--31978549 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
31978488 NNNNAATTAT
* *
31978498 AAAATTTTATAAAGTCGTAAG
1 AAAATTATA-AAAGTCGTAAA
*
31978519 AAAATTATAAAATTCGTAAA
1 AAAATTATAAAAGTCGTAAA
31978539 AAAA-TATAAAA
1 AAAATTATAAAA
31978550 TTTATCGTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 7 0.25
20 13 0.46
21 8 0.29
ACGTcount: A:0.60, C:0.04, G:0.08, T:0.29
Consensus pattern (20 bp):
AAAATTATAAAAGTCGTAAA
Found at i:31978537 original size:20 final size:19
Alignment explanation
Indices: 31978498--31978551 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
31978488 NNNNAATTAT
* *
31978498 AAAATTTTATAAAGTCGTAA
1 AAAATTATA-AAATTCGTAA
31978518 GAAAATTATAAAATTCGTAA
1 -AAAATTATAAAATTCGTAA
*
31978538 AAAAATATAAAATT
1 AAAATTATAAAATT
31978552 TATCGTACCA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
19 13 0.43
20 9 0.30
21 8 0.27
ACGTcount: A:0.57, C:0.04, G:0.07, T:0.31
Consensus pattern (19 bp):
AAAATTATAAAATTCGTAA
Found at i:31978549 original size:19 final size:20
Alignment explanation
Indices: 31978512--31978551 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
31978502 TTTTATAAAG
*
31978512 TCGTAAGAAAATTATAAAAT
1 TCGTAAGAAAAATATAAAAT
31978532 TCGTAA-AAAAATATAAAAT
1 TCGTAAGAAAAATATAAAAT
31978551 T
1 T
31978552 TATCGTACCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.30
Consensus pattern (20 bp):
TCGTAAGAAAAATATAAAAT
Found at i:31979384 original size:190 final size:186
Alignment explanation
Indices: 31978934--31979375 Score: 561
Period size: 190 Copynumber: 2.4 Consensus size: 186
31978924 TCAAAGGGAC
* * * *
31978934 TTTTTGATGCATTTTGACAGTTCAAGTACCCAATTGAGTGC-AAAAAAAAG-GG-GGCTTAATTG
1 TTTTTAATGCATTTTAAAAGTTCAAGTACCCAATTGAGTGCAAAAAAAAAGCGGTGGCTTAATTT
* * * *
31978996 CTTTATTTTG--AAAAAATTTTAGGGCCTTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGA
66 ATTTATTTTGAAAAAAAAATTGAGGGCCTTTTTGATGCATTTTGAAAGCTCAAGTACCCAATTGA
* *
31979059 GTGCAAAAAGAAAGTACGTAGGGGCTTAATTGCTTTTTTTTTTGAAAAATTTGATGGCCT
131 GT---AAAAGAAAG-ACGTAGGGGCTTAATTGCTTTTTTTTTTGAAAAATTTCAGGGCCT
* * * *
31979119 TTTTTTATGTATTTTAAAAGTTCAAGTACCTAATTGGGTGCAAAAAAAAAGCGGTGGCTTAATTT
1 TTTTTAATGCATTTTAAAAGTTCAAGTACCCAATTGAGTGCAAAAAAAAAGCGGTGGCTTAATTT
31979184 ATTTATTTTGAAAAAAAAATTGAGGGCCTTTTTGATGCATTTTGAAAGCTCAAGTACCCAATTGA
66 ATTTATTTTGAAAAAAAAATTGAGGGCCTTTTTGATGCATTTTGAAAGCTCAAGTACCCAATTGA
* *
31979249 GT-AAA-AAA-A-GTAGGGGCTTAATTGTTTTTTTTTTTGAAAAATTTCAGGGTC-
131 GTAAAAGAAAGACGTAGGGGCTTAATTGCTTTTTTTTTTGAAAAATTTCAGGGCCT
* *
31979300 TTTTTAATGCATTTTGAAAA-TTCAAGTACCCAATTGAGTGGAAAAAAAGAGCAGG-GGCTTAA-
1 TTTTTAATGCATTTT-AAAAGTTCAAGTACCCAATTGAGTGCAAAAAAAAAGC-GGTGGCTTAAT
31979362 TTACTTT-TTTTGAA
64 TTA-TTTATTTTGAA
31979376 GAATTTTGAG
Statistics
Matches: 228, Mismatches: 21, Indels: 21
0.84 0.08 0.08
Matches are distributed among these distances:
180 10 0.04
181 51 0.22
182 44 0.19
183 1 0.00
185 38 0.17
186 12 0.05
187 2 0.01
188 18 0.08
190 52 0.23
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (186 bp):
TTTTTAATGCATTTTAAAAGTTCAAGTACCCAATTGAGTGCAAAAAAAAAGCGGTGGCTTAATTT
ATTTATTTTGAAAAAAAAATTGAGGGCCTTTTTGATGCATTTTGAAAGCTCAAGTACCCAATTGA
GTAAAAGAAAGACGTAGGGGCTTAATTGCTTTTTTTTTTGAAAAATTTCAGGGCCT
Found at i:31979393 original size:88 final size:88
Alignment explanation
Indices: 31978934--31979386 Score: 436
Period size: 88 Copynumber: 5.0 Consensus size: 88
31978924 TCAAAGGGAC
* *
31978934 TTTTTGATGCATTTTGACAGTTCAAGTACCCAATTGAGTGCAAAAAAAAG--GGGGCTTAATTGC
1 TTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGCAAAAAAAAGCAGGGGCTTAATTAC
* *
31978997 TTTATTTTGAAAAAATTTTAGGGCC
66 TTT-TTTTG-AAAAATTTGAGGGCT
31979022 TTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGCAAAAAGAAAGTACGTAGGGGCTTA
1 TTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGCAAAAA-AAAG--C--AGGGGCTTA
* *
31979087 ATTGCTTTTTTTTTTGAAAAATTTGATGGCCT
61 ATTAC---TTTTTTTGAAAAATTTGA-GGGCT
* * * * *
31979119 TTTTTTATGTATTTTAAAAGTTCAAGTACCTAATTGGGTGCAAAAAAAAAGC-GGTGGCTTAATT
1 TTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGC-AAAAAAAAGCAGG-GGCTTAA-T
* *
31979183 TA-TTTATTTTGAAAAAAAAATTGAGGGCC
63 TACTTT-TTTTG---AAAAATTTGAGGGCT
* *
31979212 TTTTTGATGCATTTTGAAAGCTCAAGTACCCAATTGAGT---AAAAAAAGTAGGGGCTTAATTGT
1 TTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGCAAAAAAAAGCAGGGGCTTAA---T
** *
31979274 TTTTTTTTTTGAAAAATTTCAGGG-T
63 TACTTTTTTTGAAAAATTTGAGGGCT
* * *
31979299 CTTTTTAATGCATTTTGAAAATTCAAGTACCCAATTGAGTGGAAAAAAAGAGCAGGGGCTTAATT
1 -TTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGCAAAAAAA-AGCAGGGGCTTAATT
*
31979364 ACTTTTTTTGAAGAATTTTGAGG
64 ACTTTTTTTGAA-AAATTTGAGG
31979387 TTTTTTACAC
Statistics
Matches: 304, Mismatches: 33, Indels: 54
0.78 0.08 0.14
Matches are distributed among these distances:
88 92 0.30
89 31 0.10
90 13 0.04
91 18 0.06
92 17 0.06
93 43 0.14
94 11 0.04
95 14 0.05
96 9 0.03
97 48 0.16
98 8 0.03
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.37
Consensus pattern (88 bp):
TTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGCAAAAAAAAGCAGGGGCTTAATTAC
TTTTTTTGAAAAATTTGAGGGCT
Found at i:31980468 original size:236 final size:237
Alignment explanation
Indices: 31980045--31980517 Score: 939
Period size: 236 Copynumber: 2.0 Consensus size: 237
31980035 TTATTTTATC
31980045 TTTTTGAATAATATTATTTATAAAATATATCAATTTTTAATAATATAATATAATATATTTTAATT
1 TTTTTGAATAATATTATTTATAAAATATATCAATTTTTAATAATATAATATAATATATTTTAATT
31980110 AATATATACAATCAATCTCTACATGTACAGAAAAAATAATTATAAATTTCACCAAAAAGAATACT
66 AATATATACAATCAATCTCTACATGTACAGAAAAAATAATTATAAATTTCACCAAAAAGAATACT
31980175 TATAAATTATAGCAACTCCCTTGTGTTAGTCAAAATCTCAATCCCCTCCCACGGCATGACGGTGA
131 TATAAATTATAGCAACTCCCTTGTGTTAGTCAAAATCTCAATCCCCTCCCACGGCATGACGGTGA
31980240 TTGTAGTGGCATGTAGGGACTATTTGGTCAATTTCCAGGAGG
196 TTGTAGTGGCATGTAGGGACTATTTGGTCAATTTCCAGGAGG
31980282 TTTTTGAAT-ATATTATTTATAAAATATATCAATTTTTAATAATATAATATAATATATTTTAATT
1 TTTTTGAATAATATTATTTATAAAATATATCAATTTTTAATAATATAATATAATATATTTTAATT
31980346 AATATATACAATCAATCTCTACATGTACAGAAAAAATAATTATAAATTTCACCAAAAAGAATACT
66 AATATATACAATCAATCTCTACATGTACAGAAAAAATAATTATAAATTTCACCAAAAAGAATACT
31980411 TATAAATTATAGCAACTCCCTTGTGTTAGTCAAAATCTCAATCCCCTCCCACGGCATGACGGTGA
131 TATAAATTATAGCAACTCCCTTGTGTTAGTCAAAATCTCAATCCCCTCCCACGGCATGACGGTGA
31980476 TTGTAGTGGCATGTAGGGACTATTTGGTCAATTTCCAGGAGG
196 TTGTAGTGGCATGTAGGGACTATTTGGTCAATTTCCAGGAGG
31980518 AAAGCAATTG
Statistics
Matches: 236, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
236 227 0.96
237 9 0.04
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (237 bp):
TTTTTGAATAATATTATTTATAAAATATATCAATTTTTAATAATATAATATAATATATTTTAATT
AATATATACAATCAATCTCTACATGTACAGAAAAAATAATTATAAATTTCACCAAAAAGAATACT
TATAAATTATAGCAACTCCCTTGTGTTAGTCAAAATCTCAATCCCCTCCCACGGCATGACGGTGA
TTGTAGTGGCATGTAGGGACTATTTGGTCAATTTCCAGGAGG
Found at i:31980743 original size:6 final size:6
Alignment explanation
Indices: 31980732--31980767 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
31980722 CAACTTTGCT
31980732 ATCACC ATCACC ATCACC ATCACC ATCA-C ATCACC A
1 ATCACC ATCACC ATCACC ATCACC ATCACC ATCACC A
31980768 GCAAAATTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 5 0.17
6 24 0.83
ACGTcount: A:0.36, C:0.47, G:0.00, T:0.17
Consensus pattern (6 bp):
ATCACC
Found at i:31981890 original size:26 final size:27
Alignment explanation
Indices: 31981828--31981893 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 27
31981818 TTATATTATT
* *
31981828 GTTAGTTATTATTTTTAGTAAAACCCTA
1 GTTA-TTATTATTTTAAGTAAAACACTA
*
31981856 GTTAGTATTATTTTAAGTATAAA-ACTA
1 GTTATTATTATTTTAAGTA-AAACACTA
31981883 -TTATTATTATT
1 GTTATTATTATT
31981894 ATTGTGTTAG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
26 10 0.30
27 16 0.48
28 7 0.21
ACGTcount: A:0.35, C:0.06, G:0.09, T:0.50
Consensus pattern (27 bp):
GTTATTATTATTTTAAGTAAAACACTA
Found at i:31985989 original size:47 final size:47
Alignment explanation
Indices: 31985950--31986453 Score: 767
Period size: 47 Copynumber: 10.7 Consensus size: 47
31985940 TTTTCACACT
* * * *
31985950 AAAATTTGAACAGCATATATACAAA-ATTTGGACTACATTTGTACATC
1 AAAATTTG-ACAGCATATACATAAATAATTGGACTGCATTTGTACATC
* *
31985997 AAAATTTGACAGCATATACATATATAATTGGACTGCATTTATACATC
1 AAAATTTGACAGCATATACATAAATAATTGGACTGCATTTGTACATC
*
31986044 AAAATTTGACAGCATATACATAAATAATTGGCCTGCATTTGTACATC
1 AAAATTTGACAGCATATACATAAATAATTGGACTGCATTTGTACATC
*
31986091 AAAATTTGACAGCATATACATAAATAATTGGCCTGCATTTGTACATC
1 AAAATTTGACAGCATATACATAAATAATTGGACTGCATTTGTACATC
*
31986138 AAAATTTGACAGCATATACATATATAATTGGACTGCATTTGTACATC
1 AAAATTTGACAGCATATACATAAATAATTGGACTGCATTTGTACATC
* * *
31986185 AAAATTTGACAACATATACATATATAATTGGACTGCATTTATACATC
1 AAAATTTGACAGCATATACATAAATAATTGGACTGCATTTGTACATC
* * *
31986232 AAATTTTGACAGCATATACATATATAATTGGACTGCATTTGTATATC
1 AAAATTTGACAGCATATACATAAATAATTGGACTGCATTTGTACATC
* * * *
31986279 AAAATTTGTCAGCATATACATATATAATTGGACTACATTTATACATC
1 AAAATTTGACAGCATATACATAAATAATTGGACTGCATTTGTACATC
*
31986326 AAAATTTGACAGCATATACATATATAATTGGACTGCATTTGTACATC
1 AAAATTTGACAGCATATACATAAATAATTGGACTGCATTTGTACATC
* * * *
31986373 AAAATTTGACAGCATATACATATATAATTGTACTCCATTTATACATC
1 AAAATTTGACAGCATATACATAAATAATTGGACTGCATTTGTACATC
*
31986420 AAAATTTGACAGCATATACATATATAATTGGACT
1 AAAATTTGACAGCATATACATAAATAATTGGACT
31986454 NNNNNNNNNN
Statistics
Matches: 427, Mismatches: 29, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
46 13 0.03
47 414 0.97
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.34
Consensus pattern (47 bp):
AAAATTTGACAGCATATACATAAATAATTGGACTGCATTTGTACATC
Found at i:31986854 original size:14 final size:15
Alignment explanation
Indices: 31986830--31986864 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
31986820 TATATACATT
31986830 ACCATATAAATACTA
1 ACCATATAAATACTA
31986845 ACCATA-AAATACTA
1 ACCATATAAATACTA
31986859 ATCCAT
1 A-CCAT
31986865 GATTAAAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (15 bp):
ACCATATAAATACTA
Found at i:31993214 original size:47 final size:46
Alignment explanation
Indices: 31993162--31993525 Score: 496
Period size: 47 Copynumber: 7.7 Consensus size: 46
31993152 ATTTTCACAC
* *
31993162 CAAAATTTGGACAGCATAT-ATACAAAATTTGGACTACATTTATACAT
1 CAAAATTT-GACAGCATATAATATATAA-TTGGACTACATTTATACAT
* *
31993209 CAAAATTTGATAGCATATACATATATAATTGGACTACATCTATACAT
1 CAAAATTTGACAGCATATA-ATATATAATTGGACTACATTTATACAT
* * * *
31993256 CAAAATTTGACAGCATATACATAAATAATTGGATTGCATTTGTACAT
1 CAAAATTTGACAGCATATA-ATATATAATTGGACTACATTTATACAT
* *
31993303 CAAAATTTGACAGCATATACATATATAATTGGACTACACTTCTACAT
1 CAAAATTTGACAGCATATA-ATATATAATTGGACTACATTTATACAT
* *
31993350 CAAAATTTGACAGCATATACATATATAATTGGACTGCATTTGTACAT
1 CAAAATTTGACAGCATATA-ATATATAATTGGACTACATTTATACAT
* *
31993397 CAAAATTTGACAGCATATACATATATAATTGTACTCCATTTATACAT
1 CAAAATTTGACAGCATATA-ATATATAATTGGACTACATTTATACAT
* *
31993444 CAAAATTTGACAGCATATACATATATAATTGGACTGCATTTGTACAT
1 CAAAATTTGACAGCATATA-ATATATAATTGGACTACATTTATACAT
31993491 CAAAATTTGACAGCATATACATATATAATTGGACT
1 CAAAATTTGACAGCATATA-ATATATAATTGGACT
31993526 NNNNNNNNNN
Statistics
Matches: 291, Mismatches: 24, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
46 9 0.03
47 276 0.95
48 6 0.02
ACGTcount: A:0.41, C:0.15, G:0.10, T:0.34
Consensus pattern (46 bp):
CAAAATTTGACAGCATATAATATATAATTGGACTACATTTATACAT
Found at i:31993302 original size:94 final size:94
Alignment explanation
Indices: 31993162--31993525 Score: 579
Period size: 94 Copynumber: 3.9 Consensus size: 94
31993152 ATTTTCACAC
* * * * * *
31993162 CAAAATTTGGACAGCATATATACAAA-ATTTGGACTACATTTATACATCAAAATTTGATAGCATA
1 CAAAATTT-GACAGCATATACATAAATAATTGGACTGCATTTGTACATCAAAATTTGACAGCATA
31993226 TACATATATAATTGGACTACATCTATACAT
65 TACATATATAATTGGACTACATCTATACAT
*
31993256 CAAAATTTGACAGCATATACATAAATAATTGGATTGCATTTGTACATCAAAATTTGACAGCATAT
1 CAAAATTTGACAGCATATACATAAATAATTGGACTGCATTTGTACATCAAAATTTGACAGCATAT
*
31993321 ACATATATAATTGGACTACA-CTTCTACAT
66 ACATATATAATTGGACTACATC-TATACAT
*
31993350 CAAAATTTGACAGCATATACATATATAATTGGACTGCATTTGTACATCAAAATTTGACAGCATAT
1 CAAAATTTGACAGCATATACATAAATAATTGGACTGCATTTGTACATCAAAATTTGACAGCATAT
* * *
31993415 ACATATATAATTGTACTCCATTTATACAT
66 ACATATATAATTGGACTACATCTATACAT
*
31993444 CAAAATTTGACAGCATATACATATATAATTGGACTGCATTTGTACATCAAAATTTGACAGCATAT
1 CAAAATTTGACAGCATATACATAAATAATTGGACTGCATTTGTACATCAAAATTTGACAGCATAT
31993509 ACATATATAATTGGACT
66 ACATATATAATTGGACT
31993526 NNNNNNNNNN
Statistics
Matches: 252, Mismatches: 15, Indels: 6
0.92 0.05 0.02
Matches are distributed among these distances:
93 16 0.06
94 236 0.94
ACGTcount: A:0.41, C:0.15, G:0.10, T:0.34
Consensus pattern (94 bp):
CAAAATTTGACAGCATATACATAAATAATTGGACTGCATTTGTACATCAAAATTTGACAGCATAT
ACATATATAATTGGACTACATCTATACAT
Found at i:31993307 original size:141 final size:140
Alignment explanation
Indices: 31993162--31993525 Score: 550
Period size: 141 Copynumber: 2.6 Consensus size: 140
31993152 ATTTTCACAC
* * *
31993162 CAAAATTTGGACAGCATAT-ATACAAAATTTGGACTACATTTATACATCAAAATTTGATAGCATA
1 CAAAATTT-GACAGCATATAATATATAA-TTGGACTACATTTATACATCAAAATTTGACAGCATA
*
31993226 TACATATATAATTGGACTACATCTATACATCAAAATTTGACAGCATATACATAAATAATTGGATT
64 TACATATATAATTGGACTACATCTATACATCAAAATTTGACAGCATATACATAAATAATTGGACT
* *
31993291 GCATTTGTACAT
129 CCATTTATACAT
* *
31993303 CAAAATTTGACAGCATATACATATATAATTGGACTACACTTCTACATCAAAATTTGACAGCATAT
1 CAAAATTTGACAGCATATA-ATATATAATTGGACTACATTTATACATCAAAATTTGACAGCATAT
* * * * *
31993368 ACATATATAATTGGACTGCATTTGTACATCAAAATTTGACAGCATATACATATATAATTGTACTC
65 ACATATATAATTGGACTACATCTATACATCAAAATTTGACAGCATATACATAAATAATTGGACTC
31993433 CATTTATACAT
130 CATTTATACAT
* *
31993444 CAAAATTTGACAGCATATACATATATAATTGGACTGCATTTGTACATCAAAATTTGACAGCATAT
1 CAAAATTTGACAGCATATA-ATATATAATTGGACTACATTTATACATCAAAATTTGACAGCATAT
31993509 ACATATATAATTGGACT
65 ACATATATAATTGGACT
31993526 NNNNNNNNNN
Statistics
Matches: 205, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
140 10 0.05
141 189 0.92
142 6 0.03
ACGTcount: A:0.41, C:0.15, G:0.10, T:0.34
Consensus pattern (140 bp):
CAAAATTTGACAGCATATAATATATAATTGGACTACATTTATACATCAAAATTTGACAGCATATA
CATATATAATTGGACTACATCTATACATCAAAATTTGACAGCATATACATAAATAATTGGACTCC
ATTTATACAT
Found at i:31994526 original size:43 final size:43
Alignment explanation
Indices: 31994446--31994561 Score: 132
Period size: 43 Copynumber: 2.7 Consensus size: 43
31994436 CAATGCCAAC
* * * *
31994446 GTCCCAGACGTGGTCTTACATGTAATCACATA-CCGATGCC-ACT
1 GTCCCAGACGTGGTCTTACACGAAAACACA-AGTCGATGCCGA-T
31994489 GTCCTC-GACAG-GGTCTTACACGAAAACACAAGTCGATGCCGAT
1 GTCC-CAGAC-GTGGTCTTACACGAAAACACAAGTCGATGCCGAT
31994532 GTCCCAGACGTGGTCTTACACGAAAACACA
1 GTCCCAGACGTGGTCTTACACGAAAACACA
31994562 TATCGGAGTC
Statistics
Matches: 63, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
42 3 0.05
43 57 0.90
44 3 0.05
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (43 bp):
GTCCCAGACGTGGTCTTACACGAAAACACAAGTCGATGCCGAT
Found at i:31996800 original size:152 final size:151
Alignment explanation
Indices: 31996636--31997694 Score: 1177
Period size: 152 Copynumber: 7.0 Consensus size: 151
31996626 CAAAATTTAG
* * *
31996636 TAAAAAACCCTTATTTCGACCCTTTGTTTGTATTTTTTTCCTGAATTTTATTACTTTTAAAAATA
1 TAAAAAAACCTTATTTCGGCCCTTTGTTCGTATTTTTTTCCTGAATTTTATTACTTTTAAAAATA
* *
31996701 TAATATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATTTAAATCAATT
66 TATTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATTT-AATTAATT
31996766 TAGTGTGTTTTTTAAATAAATT
130 TAGTGTGTTTTTTAAATAAATT
* * *
31996788 TAAAAAAACCTTATTTCGACCCTTTGCTCGTATTTTTTTCCTAAATTTTATTACTTTCAATAAAA
1 TAAAAAAACCTTATTTCGGCCCTTTGTTCGTATTTTTTTCCTGAATTTTATTACTTT---TAAAA
* * * *
31996853 ACATATTATTTT-TGTATTTTATTATTTTACTTTATTTTAGTACATTATGTTTGAAATGT-ATTA
63 ATATATTATTTTCT-AATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATTTAATTA
* * * **
31996916 ATTAAGTCTGTTTTTTTTAATTTA-T
127 ATTTAGTGTG-TTTTTTAAATAAATT
* * * *
31996941 TAAAAAACCCTTATTTCGGCCCTTTGTTCGTATTTTTTT-CTTAATTTTATTATTTTTAAAAAAA
1 TAAAAAAACCTTATTTCGGCCCTTTGTTCGTATTTTTTTCCTGAATTTTATTACTTTTAAAAATA
* *
31997005 TACTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATTTAAATAAATT
66 TATTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATTT-AATTAATT
* *
31997070 TAGTGTGTTTTTAAAATTAATTT
130 TAGTGTGTTTTTTAAA-TAAATT
* * **
31997093 TAAAATAACCCTTATTTC-GCCCTTTGCTCGTATTTTTTTCCCAAATTTTATTACTTTCAATAAA
1 TAAAA-AAACCTTATTTCGGCCCTTTGTTCGTATTTTTTTCCTGAATTTTATTACTTT---TAAA
* * *
31997157 AATATATTATTTTCGT-ATTTTATTATTTTACTTTATTTTAGTACATTATGTTTAAAATGT-ATT
62 AATATATTATTTTC-TAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATTTAATT
* * *
31997220 AATTAAGTCTGTTTTTT---TTAATT
126 AATTTAGTGTGTTTTTTAAATAAATT
* * * *
31997243 TAGTAAAAAACCCTATTTCGGCCCTTTGCTCTTATTTTTTTTCC-GAATTTGATTACTTTTAAAA
1 TA--AAAAAACCTTATTTCGGCCCTTTGTTCGTA-TTTTTTTCCTGAATTTTATTACTTTTAAAA
* * * *
31997307 ATATACTATTTTCTAATTTTATTGTTTTACATTATTTTAGCACATTATGTTTGAAATTTAAATAT
63 ATATATTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATTTAATTA-
31997372 ATTTAGTGTGTTTTTTAAATAAATT
127 ATTTAGTGTGTTTTTTAAATAAATT
* * * * *
31997397 TAAAAAAAACCCTTATTTAGGTCATTTGCTCGTA-TTTTTTCCCGAATTTTATTACTTTTAATAA
1 T-AAAAAAA-CCTTATTTCGGCCCTTTGTTCGTATTTTTTTCCTGAATTTTATTACTTTT-A-AA
*
31997461 AATATATTATTTTCGT-ATTTTATT-TTTTACATTATTTTAGTAAATTATGTTTGAAATGTTTTA
62 AATATATTATTTTC-TAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAA---TTTA
* * ** *
31997524 ATT-ATTT-CTGTTTTTTTTAAATTTA-G
123 ATTAATTTAGTGTGTTTTTTAAATAAATT
* *
31997550 TAAAAAAACCTTACTTCGGCCCTTTGTTCGTATTTTTTTCTCT-ACATTTTATTACTTTAAAAAA
1 TAAAAAAACCTTATTTCGGCCCTTTGTTCGTATTTTTTTC-CTGA-ATTTTATTACTTTTAAAAA
* * * *
31997614 TATCA-CATTTTCTAATTTTCTAATTTTACATTATTTTAGTACATTATGTTTTAAATTT-ATTAA
64 TAT-ATTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATTTAATTAA
*
31997677 TTTAGTTTGTTTTTTAAA
128 TTTAGTGTGTTTTTTAAA
31997695 AATACAATTT
Statistics
Matches: 771, Mismatches: 93, Indels: 88
0.81 0.10 0.09
Matches are distributed among these distances:
148 4 0.01
149 120 0.16
150 29 0.04
151 74 0.10
152 178 0.23
153 119 0.15
154 97 0.13
155 85 0.11
156 58 0.08
157 7 0.01
ACGTcount: A:0.30, C:0.10, G:0.07, T:0.53
Consensus pattern (151 bp):
TAAAAAAACCTTATTTCGGCCCTTTGTTCGTATTTTTTTCCTGAATTTTATTACTTTTAAAAATA
TATTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATTTAATTAATTT
AGTGTGTTTTTTAAATAAATT
Found at i:31997237 original size:304 final size:304
Alignment explanation
Indices: 31996629--31997695 Score: 1567
Period size: 305 Copynumber: 3.5 Consensus size: 304
31996619 TTCAAAACAA
* *
31996629 AATTTAGTAAAAAACCCTTATTTCGACCCTTTGTTTGTATTTTTTTCCTGAATTTTATTACTTTT
1 AATTTAGTAAAAAACCCTTATTTCGGCCCTTTGTTCGTATTTTTTT-CTGAATTTTATTACTTTT
* *
31996694 AAAAATATAATATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATTTAA
65 AAAAAAATACTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATTTAA
* * * *
31996759 ATCAATTTAGTGTGTTTTTTAAA-TAAATTTAAAAAAACCTTATTTCGACCCTTTGCTCGTATTT
130 ATAAATTTAGTGTGTTTTTAAAATTAATTTTAAAAAACCCTTATTTCG-CCCTTTGCTCGTATTT
* * *
31996823 TTTTCCTAAATTTTATTACTTTCAATAAAAACATATTATTTTTGTATTTTATTATTTTACTTTAT
194 TTTTCCCAAATTTTATTACTTTCAATAAAAATATATTATTTTCGTATTTTATTATTTTACTTTAT
31996888 TTTAGTACATTATGTTTGAAATGTATTAATTAAGTCTGTTTTTTTT
259 TTTAGTACATTATGTTTGAAATGTATTAATTAAGTCTGTTTTTTTT
* * *
31996934 AATTTATTAAAAAACCCTTATTTCGGCCCTTTGTTCGTATTTTTTTCTTAATTTTATTATTTTTA
1 AATTTAGTAAAAAACCCTTATTTCGGCCCTTTGTTCGTATTTTTTTCTGAATTTTATTACTTTTA
31996999 AAAAAATACTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATTTAAA
66 AAAAAATACTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATTTAAA
31997064 TAAATTTAGTGTGTTTTTAAAATTAATTTTAAAATAACCCTTATTTCGCCCTTTGCTCGTATTTT
131 TAAATTTAGTGTGTTTTTAAAATTAATTTTAAAA-AACCCTTATTTCGCCCTTTGCTCGTATTTT
31997129 TTTCCCAAATTTTATTACTTTCAATAAAAATATATTATTTTCGTATTTTATTATTTTACTTTATT
195 TTTCCCAAATTTTATTACTTTCAATAAAAATATATTATTTTCGTATTTTATTATTTTACTTTATT
*
31997194 TTAGTACATTATGTTTAAAATGTATTAATTAAGTCTGTTTTTTTT
260 TTAGTACATTATGTTTGAAATGTATTAATTAAGTCTGTTTTTTTT
* * * *
31997239 AATTTAGTAAAAAACCC-TATTTCGGCCCTTTGCTCTTATTTTTTTTCCGAATTTGATTACTTTT
1 AATTTAGTAAAAAACCCTTATTTCGGCCCTTTGTTCGTA-TTTTTTTCTGAATTTTATTACTTTT
* * *
31997303 AAAAATATACTATTTTCTAATTTTATTGTTTTACATTATTTTAGCACATTATGTTTGAAATTTAA
65 AAAAAAATACTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATTTAA
* * * * * * *
31997368 ATATATTTAGTGTGTTTTTTAAATAAATTTAAAAAAAACCCTTATTTAGGTCATTTGCTCGTA-T
130 ATAAATTTAGTGTGTTTTTAAAATTAATTT-TAAAAAACCCTTATTT-CGCCCTTTGCTCGTATT
* * *
31997432 TTTTTCCCGAATTTTATTACTTTTAAT-AAAATATATTATTTTCGTATTTTATT-TTTTACATTA
193 TTTTTCCCAAATTTTATTACTTTCAATAAAAATATATTATTTTCGTATTTTATTATTTTACTTTA
* * **
31997495 TTTTAGTAAATTATGTTTGAAATGTTTTAATTATTTCTGTTTTTTTT
258 TTTTAGTACATTATGTTTGAAATGTATTAATTAAGTCTGTTTTTTTT
* * *
31997542 AAATTTAGTAAAAAAACCTTACTTCGGCCCTTTGTTCGTATTTTTTTCTCTACATTTTATTAC-T
1 -AATTTAGTAAAAAACCCTTATTTCGGCCCTTTGTTCGTATTTTTTTCT-GA-ATTTTATTACTT
* * *
31997606 TTAAAAAATATCAC-ATTTTCTAATTTTCTAATTTTACATTATTTTAGTACATTATGTTTTAAAT
63 TTAAAAAA-AT-ACTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAAT
* *
31997670 TT--ATTAATTTAGTTTGTTTTTTAAAA
126 TTAAATAAATTTAGTGTG-TTTTTAAAA
31997696 ATACAATTTT
Statistics
Matches: 693, Mismatches: 57, Indels: 24
0.90 0.07 0.03
Matches are distributed among these distances:
303 51 0.07
304 180 0.26
305 374 0.54
306 86 0.12
307 2 0.00
ACGTcount: A:0.30, C:0.10, G:0.07, T:0.53
Consensus pattern (304 bp):
AATTTAGTAAAAAACCCTTATTTCGGCCCTTTGTTCGTATTTTTTTCTGAATTTTATTACTTTTA
AAAAAATACTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATTTAAA
TAAATTTAGTGTGTTTTTAAAATTAATTTTAAAAAACCCTTATTTCGCCCTTTGCTCGTATTTTT
TTCCCAAATTTTATTACTTTCAATAAAAATATATTATTTTCGTATTTTATTATTTTACTTTATTT
TAGTACATTATGTTTGAAATGTATTAATTAAGTCTGTTTTTTTT
Found at i:31998033 original size:4 final size:4
Alignment explanation
Indices: 31998024--31998127 Score: 63
Period size: 4 Copynumber: 24.5 Consensus size: 4
31998014 AAAATACCTT
* * *
31998024 TTTC TTTC TTTC TTT- TTCC TTCC TTCCC TCTTC -TTC TTCTCC TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TT-TC T-TTC TTTC TT-T-C TTTC
31998070 -TT- TTTC TTTC TTTC TTCTC ATTTCC TTTTC TTTCC TTTTC TTTC TTTC
1 TTTC TTTC TTTC TTTC TT-TC -TTT-C -TTTC TTT-C -TTTC TTTC TTTC
31998118 TTTC TTTC TT
1 TTTC TTTC TT
31998128 CTCCTTTCCC
Statistics
Matches: 84, Mismatches: 3, Indels: 26
0.74 0.03 0.23
Matches are distributed among these distances:
3 9 0.11
4 50 0.60
5 12 0.14
6 13 0.15
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.68
Consensus pattern (4 bp):
TTTC
Found at i:31998034 original size:10 final size:10
Alignment explanation
Indices: 31998028--31998127 Score: 56
Period size: 10 Copynumber: 9.0 Consensus size: 10
31998018 TACCTTTTTC
31998028 TTTCTTTCTT
1 TTTCTTTCTT
* *
31998038 TTTCCTTCCT
1 TTTCTTTCTT
**
31998048 TCCCTCTTCTT
1 TTTCT-TTCTT
31998059 CTTCTCCTTTCTT
1 -TT-T-CTTTCTT
31998072 TTTCTTTCTTT
1 TTTCTTTC-TT
*
31998083 CTTCTCATTTCCT
1 -TT-TC-TTTCTT
*
31998096 TTTCTTTCCT
1 TTTCTTTCTT
31998106 TTTCTTTCTTT
1 TTTCTTTC-TT
31998117 CTTTCTTTCTT
1 -TTTCTTTCTT
31998128 CTCCTTTCCC
Statistics
Matches: 70, Mismatches: 10, Indels: 19
0.71 0.10 0.19
Matches are distributed among these distances:
10 29 0.41
11 12 0.17
12 15 0.21
13 8 0.11
14 6 0.09
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.68
Consensus pattern (10 bp):
TTTCTTTCTT
Found at i:31998095 original size:48 final size:43
Alignment explanation
Indices: 31998021--31998157 Score: 116
Period size: 42 Copynumber: 3.0 Consensus size: 43
31998011 AAAAAAATAC
* * *
31998021 CTTTTTCTTTCTTTCTTTTTCCTTCCTTCCCTCTTCTTCTTCTCCTTT
1 CTTTTTCTTTCTTTC-TTCTCTTTCCTT--CTCTT-TCCTT-TCCTTT
* *
31998069 CTTTTTCTTTCTTTCTTCTCATTTCCTTTTCTTTCCTTTTCTTT
1 CTTTTTCTTTCTTTCTTCTC-TTTCCTTCTCTTTCCTTTCCTTT
* *
31998113 C--TTTCTTTCTTTCTTCTCCTTTCCCTCTCCTTTCCCTCTCCTTT
1 CTTTTTCTTTCTTTCTTCT-CTTTCCTTCT-CTTT-CCTTTCCTTT
31998157 C
1 C
31998158 CTTCTCCACC
Statistics
Matches: 76, Mismatches: 9, Indels: 12
0.78 0.09 0.12
Matches are distributed among these distances:
42 23 0.30
43 5 0.07
44 15 0.20
45 4 0.05
46 4 0.05
47 4 0.05
48 21 0.28
ACGTcount: A:0.01, C:0.36, G:0.00, T:0.64
Consensus pattern (43 bp):
CTTTTTCTTTCTTTCTTCTCTTTCCTTCTCTTTCCTTTCCTTT
Found at i:31998107 original size:5 final size:5
Alignment explanation
Indices: 31998063--31998160 Score: 55
Period size: 5 Copynumber: 20.0 Consensus size: 5
31998053 CTTCTTCTTC
* * * * *
31998063 TCCTT TCTTT TTCTT T-CTT T-CTT CTCATT TCCTT TTCTT TCCTT TTCTT
1 TCCTT TCCTT TCCTT TCCTT TCCTT -TCCTT TCCTT TCCTT TCCTT TCCTT
* *
31998112 T-CTT T-CTT T-CTT T-CTT CTCCTT TCCCTC TCCTT TCCCTC TCCTT
1 TCCTT TCCTT TCCTT TCCTT -TCCTT T-CCTT TCCTT T-CCTT TCCTT
31998156 TCCTT
1 TCCTT
31998161 CTCCACCCAC
Statistics
Matches: 75, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
4 22 0.29
5 40 0.53
6 13 0.17
ACGTcount: A:0.01, C:0.36, G:0.00, T:0.63
Consensus pattern (5 bp):
TCCTT
Found at i:31998141 original size:11 final size:11
Alignment explanation
Indices: 31998127--31998164 Score: 67
Period size: 11 Copynumber: 3.5 Consensus size: 11
31998117 CTTTCTTTCT
31998127 TCTCCTTTCCC
1 TCTCCTTTCCC
31998138 TCTCCTTTCCC
1 TCTCCTTTCCC
*
31998149 TCTCCTTTCCT
1 TCTCCTTTCCC
31998160 TCTCC
1 TCTCC
31998165 ACCCACCAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (11 bp):
TCTCCTTTCCC
Found at i:32001008 original size:48 final size:48
Alignment explanation
Indices: 32000933--32001028 Score: 147
Period size: 48 Copynumber: 2.0 Consensus size: 48
32000923 CATAGGGAGT
* * *
32000933 TTGTATGATAGGGGCGGTGGTAGCCCCTTCTAAGACTAGGCTTTGTCA
1 TTGTATGATAGGGGCGGTAGTAACCCCTTCTAAGACTAGACTTTGTCA
* *
32000981 TTGTATGATAGGGGGGGTAGTAACCCCTTCTAGGACTAGACTTTGTCA
1 TTGTATGATAGGGGCGGTAGTAACCCCTTCTAAGACTAGACTTTGTCA
32001029 CCCCTACCTA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (48 bp):
TTGTATGATAGGGGCGGTAGTAACCCCTTCTAAGACTAGACTTTGTCA
Found at i:32002561 original size:64 final size:64
Alignment explanation
Indices: 32002486--32002616 Score: 244
Period size: 64 Copynumber: 2.0 Consensus size: 64
32002476 CAGTAGCAAG
* *
32002486 TTTCGAGACTTAGGATCAAAGCATTGAGACTTATAGGCCAAGTCTCGAGACTAGCTACTTAAGC
1 TTTCGAAACTTAGGATCAAAGCATTGAGACTTATAGGCCAAGTCTCGAGACTACCTACTTAAGC
32002550 TTTCGAAACTTAGGATCAAAGCATTGAGACTTATAGGCCAAGTCTCGAGACTACCTACTTAAGC
1 TTTCGAAACTTAGGATCAAAGCATTGAGACTTATAGGCCAAGTCTCGAGACTACCTACTTAAGC
32002614 TTT
1 TTT
32002617 GAATTACACT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (64 bp):
TTTCGAAACTTAGGATCAAAGCATTGAGACTTATAGGCCAAGTCTCGAGACTACCTACTTAAGC
Found at i:32011157 original size:28 final size:28
Alignment explanation
Indices: 32011126--32011282 Score: 166
Period size: 28 Copynumber: 5.8 Consensus size: 28
32011116 TTTACAAAAT
*
32011126 TTGCCACGAAGGCTTCCATTTTCTTAGA
1 TTGCCACAAAGGCTTCCATTTTCTTAGA
*
32011154 TTGCCTCAAAGGCTTCCATTTTCTTAGA
1 TTGCCACAAAGGCTTCCATTTTCTTAGA
* *
32011182 TTACCACAAAGGTTTCCA--TT-TTAGA
1 TTGCCACAAAGGCTTCCATTTTCTTAGA
* * * *
32011207 TACGCAACTAAGACTTCCATTTTC-TAGA
1 T-TGCCACAAAGGCTTCCATTTTCTTAGA
32011235 TTGCCACAAAGGCTTCCA--TT-TTAGA
1 TTGCCACAAAGGCTTCCATTTTCTTAGA
*
32011260 TACGCCACAAAGGCTTCCATTTT
1 T-TGCCACAAAGGCTTCCATTTT
32011283 TTGACGTGTT
Statistics
Matches: 105, Mismatches: 16, Indels: 16
0.77 0.12 0.12
Matches are distributed among these distances:
25 13 0.12
26 29 0.28
27 13 0.12
28 50 0.48
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (28 bp):
TTGCCACAAAGGCTTCCATTTTCTTAGA
Found at i:32011236 original size:53 final size:54
Alignment explanation
Indices: 32011160--32011282 Score: 185
Period size: 53 Copynumber: 2.3 Consensus size: 54
32011150 TAGATTGCCT
* *
32011160 CAAAGGCTTCCATTTTCTTAGATTACCACAAAGGTTTCCATTTTAGATACGCAA
1 CAAAGACTTCCATTTTCTTAGATTACCACAAAGGCTTCCATTTTAGATACGCAA
* * *
32011214 CTAAGACTTCCATTTTC-TAGATTGCCACAAAGGCTTCCATTTTAGATACGCCA
1 CAAAGACTTCCATTTTCTTAGATTACCACAAAGGCTTCCATTTTAGATACGCAA
*
32011267 CAAAGGCTTCCATTTT
1 CAAAGACTTCCATTTT
32011283 TTGACGTGTT
Statistics
Matches: 62, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
53 47 0.76
54 15 0.24
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.33
Consensus pattern (54 bp):
CAAAGACTTCCATTTTCTTAGATTACCACAAAGGCTTCCATTTTAGATACGCAA
Found at i:32012297 original size:2 final size:2
Alignment explanation
Indices: 32012290--32012318 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
32012280 ATAAAACCCA
32012290 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
32012319 TATATAGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:32013934 original size:20 final size:20
Alignment explanation
Indices: 32013892--32013934 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
32013882 TGTGCTTACA
* * **
32013892 TAATTTAATAAATTTTATTT
1 TAATTTAAAAAATTATAAAT
32013912 TAATTTAAAAAATTATAAAT
1 TAATTTAAAAAATTATAAAT
32013932 TAA
1 TAA
32013935 AAAATAATTG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
TAATTTAAAAAATTATAAAT
Found at i:32020249 original size:2 final size:2
Alignment explanation
Indices: 32020244--32020269 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
32020234 ATGGAAAAAG
32020244 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
32020270 GTTATTTTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32022528 original size:37 final size:37
Alignment explanation
Indices: 32022487--32022577 Score: 112
Period size: 37 Copynumber: 2.5 Consensus size: 37
32022477 AATTATATTA
* * *
32022487 TTATTCGGGCTTCGTGCC-TGCAGGTTTAGTGCTGGTG
1 TTATTCAGGCTTCGTGCCTTGCAGGCTTAGTGC-CGTG
*
32022524 TTATTCAGGCTTTGTGCCTTGCAGGCTTAGTGCCGTG
1 TTATTCAGGCTTCGTGCCTTGCAGGCTTAGTGCCGTG
* *
32022561 TTATTCAGACTTAGTGC
1 TTATTCAGGCTTCGTGC
32022578 TAGTGTTATT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
37 34 0.72
38 13 0.28
ACGTcount: A:0.12, C:0.20, G:0.30, T:0.38
Consensus pattern (37 bp):
TTATTCAGGCTTCGTGCCTTGCAGGCTTAGTGCCGTG
Found at i:32022575 original size:21 final size:21
Alignment explanation
Indices: 32022549--32022600 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 21
32022539 GCCTTGCAGG
32022549 CTTAGTGCCGTGTTATTCAGA
1 CTTAGTGCCGTGTTATTCAGA
* *
32022570 CTTAGTGCTAGTGTTATTCAGG
1 CTTAGTGC-CGTGTTATTCAGA
*
32022592 CTTTGTGCC
1 CTTAGTGCC
32022601 TATCAGGCTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 8 0.31
22 18 0.69
ACGTcount: A:0.15, C:0.19, G:0.25, T:0.40
Consensus pattern (21 bp):
CTTAGTGCCGTGTTATTCAGA
Found at i:32023019 original size:62 final size:62
Alignment explanation
Indices: 32022922--32023047 Score: 234
Period size: 62 Copynumber: 2.0 Consensus size: 62
32022912 TAATGAATGG
*
32022922 TATTGGACATATGTTGCATGACTAGGTAAGTCCTTTTGGAACACTTTTATTTAGTACATGTA
1 TATTGGACATATGTTGCATGACTAGCTAAGTCCTTTTGGAACACTTTTATTTAGTACATGTA
*
32022984 TATTGGACTTATGTTGCATGACTAGCTAAGTCCTTTTGGAACACTTTTATTTAGTACATGTA
1 TATTGGACATATGTTGCATGACTAGCTAAGTCCTTTTGGAACACTTTTATTTAGTACATGTA
32023046 TA
1 TA
32023048 AAGTATTTTG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.27, C:0.13, G:0.18, T:0.41
Consensus pattern (62 bp):
TATTGGACATATGTTGCATGACTAGCTAAGTCCTTTTGGAACACTTTTATTTAGTACATGTA
Found at i:32024419 original size:21 final size:21
Alignment explanation
Indices: 32024395--32024445 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
32024385 GAGATCGATA
*
32024395 CACACGCCCATGTGGTTATTC
1 CACACGCCCATGTGGCTATTC
* *
32024416 CACACACTCATGTGGCTATTC
1 CACACGCCCATGTGGCTATTC
32024437 CACACGCCC
1 CACACGCCC
32024446 GTGCTCCTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.22, C:0.39, G:0.16, T:0.24
Consensus pattern (21 bp):
CACACGCCCATGTGGCTATTC
Found at i:32025176 original size:20 final size:20
Alignment explanation
Indices: 32025151--32025190 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
32025141 TCTACACAAA
32025151 GACATGATCAAAAACTGAAT
1 GACATGATCAAAAACTGAAT
32025171 GACATGATCAAAAACTGAAT
1 GACATGATCAAAAACTGAAT
32025191 AACCACATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.20
Consensus pattern (20 bp):
GACATGATCAAAAACTGAAT
Found at i:32025568 original size:70 final size:69
Alignment explanation
Indices: 32025494--32025630 Score: 168
Period size: 70 Copynumber: 2.0 Consensus size: 69
32025484 AACCAACAAT
* *
32025494 GTTTTGCACCCAGCG-CTAGTCGAATAACCGACGAATTGTGTGCCTAGCACTAGTCGAATGAATC
1 GTTTTGCACCCAGCGCCT-GTCGAATAACCGACGAATTGTCT-CCCAGCACTAGTCGAATGAATC
32025558 GACATG
64 GACATG
** * * * * *
32025564 GTTTTGTGCCCAGCGCCTGTTGGATAAGCGACGAATTGTCTCCCAGCACTAGTTGATTGAATCGA
1 GTTTTGCACCCAGCGCCTGTCGAATAACCGACGAATTGTCTCCCAGCACTAGTCGAATGAATCGA
32025629 CA
66 CA
32025631 AATTTATACA
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
69 23 0.40
70 32 0.56
71 2 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (69 bp):
GTTTTGCACCCAGCGCCTGTCGAATAACCGACGAATTGTCTCCCAGCACTAGTCGAATGAATCGA
CATG
Found at i:32031096 original size:3 final size:3
Alignment explanation
Indices: 32031009--32031077 Score: 70
Period size: 3 Copynumber: 23.0 Consensus size: 3
32030999 CTTTTTTGTG
* *
32031009 TTA TTA TTA TTA TTA TTA TTTA GT- TTA ATA TT- TTCA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TT-A TTA TTA TTA
* *
32031054 TTA TTA TCA TCA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA
32031078 CTACTACTTT
Statistics
Matches: 56, Mismatches: 6, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
2 3 0.05
3 48 0.86
4 5 0.09
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:32039710 original size:23 final size:23
Alignment explanation
Indices: 32039662--32039713 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
32039652 GAAAATTGTA
* **
32039662 AAAAAAAAAAACAATAAGTTTGC
1 AAAAAAAAAAACAATAAATTAAC
32039685 AAAAAAAAAAACTAA-AAATTAAC
1 AAAAAAAAAAAC-AATAAATTAAC
32039708 AAAAAA
1 AAAAAA
32039714 GTCTTCCTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 23 0.92
24 2 0.08
ACGTcount: A:0.75, C:0.08, G:0.04, T:0.13
Consensus pattern (23 bp):
AAAAAAAAAAACAATAAATTAAC
Found at i:32058838 original size:27 final size:27
Alignment explanation
Indices: 32058522--32058841 Score: 265
Period size: 27 Copynumber: 11.9 Consensus size: 27
32058512 AACATGACAG
* * * *
32058522 GAAATAAAAACCTTTGTGGAGAAAAAT
1 GAAAGAAAAGCCTTTGTGGTGAAATAT
* *
32058549 AAAAGAAAAGCCTTTGTGG-AAAATCAT
1 GAAAGAAAAGCCTTTGTGGTGAAAT-AT
** * *
32058576 GAAAGAAAAGATTTTGTTGCT-AAACAT
1 GAAAGAAAAGCCTTTG-TGGTGAAATAT
* * *
32058603 GAAAGAAAAGTCTTTGTGG-CAAATCTT
1 GAAAGAAAAGCCTTTGTGGTGAAAT-AT
* *
32058630 GAAAGAAAATCCTTTGCGGTGAAATAT
1 GAAAGAAAAGCCTTTGTGGTGAAATAT
*
32058657 GAAAGGAAAA-CCTTTATGGTGAAATAT
1 GAAA-GAAAAGCCTTTGTGGTGAAATAT
* **
32058684 GAAAGGAAAA-CCTTTGTAGCAAAATAT
1 GAAA-GAAAAGCCTTTGTGGTGAAATAT
** * * *
32058711 GAAAGAAAATTCTTTGTGATAAAACAT
1 GAAAGAAAAGCCTTTGTGGTGAAATAT
* * *
32058738 GAAAGAAAAACTTTTGTGGCGAAATAT
1 GAAAGAAAAGCCTTTGTGGTGAAATAT
**
32058765 GAAA-AGAAAGCCTTTGTGGAAAAATAT
1 GAAAGA-AAAGCCTTTGTGGTGAAATAT
*
32058792 GAAAGAAAAGCCCTTGTGGTGAAATAT
1 GAAAGAAAAGCCTTTGTGGTGAAATAT
*
32058819 GAAAGAAAAGCCCTTGTGGTGAA
1 GAAAGAAAAGCCTTTGTGGTGAA
32058842 CCTTGCAAAG
Statistics
Matches: 238, Mismatches: 45, Indels: 20
0.79 0.15 0.07
Matches are distributed among these distances:
26 14 0.06
27 209 0.88
28 15 0.06
ACGTcount: A:0.45, C:0.09, G:0.21, T:0.25
Consensus pattern (27 bp):
GAAAGAAAAGCCTTTGTGGTGAAATAT
Found at i:32065820 original size:13 final size:13
Alignment explanation
Indices: 32065804--32065828 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32065794 TAGTAAATTA
32065804 AATAAGAAAATAG
1 AATAAGAAAATAG
32065817 AATAAGAAAATA
1 AATAAGAAAATA
32065829 ATTCCATTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.12, T:0.16
Consensus pattern (13 bp):
AATAAGAAAATAG
Found at i:32078247 original size:27 final size:27
Alignment explanation
Indices: 32078216--32078436 Score: 179
Period size: 27 Copynumber: 8.4 Consensus size: 27
32078206 CCCCAAAATA
*
32078216 GGTAAAATAACCAAAATACCCCCATAG
1 GGTAAAATGACCAAAATACCCCCATAG
* * *
32078243 GGTAAAGTGACCGAAATACCTCCATAG
1 GGTAAAATGACCAAAATACCCCCATAG
* * *
32078270 GGTAAAATGATCGAAATACCTCCATAG
1 GGTAAAATGACCAAAATACCCCCATAG
* * *
32078297 AGTAAAATGATCGAAATA-CCCCATAG
1 GGTAAAATGACCAAAATACCCCCATAG
*
32078323 GGTAAAATGA-C--TATA-CCCC-TAG
1 GGTAAAATGACCAAAATACCCCCATAG
* **** *
32078345 GAGATGAAATGA--TTGTTACCCTCATAG
1 G-G-TAAAATGACCAAAATACCCCCATAG
* *
32078372 GGTAAAATAACCAAAATACCCCTATAG
1 GGTAAAATGACCAAAATACCCCCATAG
*
32078399 GGTAAAATAACCAAAATACCCCCATAG
1 GGTAAAATGACCAAAATACCCCCATAG
*
32078426 GATAAAATGAC
1 GGTAAAATGAC
32078437 TGTTATACCC
Statistics
Matches: 161, Mismatches: 25, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
22 4 0.02
23 8 0.05
24 7 0.04
25 9 0.06
26 20 0.12
27 113 0.70
ACGTcount: A:0.43, C:0.21, G:0.16, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCAAAATACCCCCATAG
Found at i:32078389 original size:102 final size:104
Alignment explanation
Indices: 32078265--32078468 Score: 270
Period size: 102 Copynumber: 2.0 Consensus size: 104
32078255 GAAATACCTC
* * * * * * *
32078265 CATAGGGTAAAATGATCGAAATACCTCC-ATAGAGTAAAATGATCGAAATA-CCCCATAGGGTAA
1 CATAGGGTAAAATAACCAAAATACC-CCTATAGAGTAAAATAACCAAAATACCCCCATAGGATAA
* *
32078328 AATGAC-TATACCCCTAGGAGATGAAATGATTGTTACCCT
65 AATGACTTATACCCCTAGAAGATGAAATGACTGTTACCCT
*
32078367 CATAGGGTAAAATAACCAAAATACCCCTATAGGGTAAAATAACCAAAATACCCCCATAGGATAAA
1 CATAGGGTAAAATAACCAAAATACCCCTATAGAGTAAAATAACCAAAATACCCCCATAGGATAAA
32078432 ATGACTGTTATACCCCTAGAAGATGAAATGACTGTTA
66 ATGAC--TTATACCCCTAGAAGATGAAATGACTGTTA
32078469 TGGCCTTATG
Statistics
Matches: 87, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
101 2 0.02
102 40 0.46
103 18 0.21
106 27 0.31
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.23
Consensus pattern (104 bp):
CATAGGGTAAAATAACCAAAATACCCCTATAGAGTAAAATAACCAAAATACCCCCATAGGATAAA
ATGACTTATACCCCTAGAAGATGAAATGACTGTTACCCT
Found at i:32078444 original size:27 final size:27
Alignment explanation
Indices: 32078414--32078469 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
32078404 AATAACCAAA
* *
32078414 ATACCCCCATAGGATAAAATGACTGTT
1 ATACCCCCAGAAGATAAAATGACTGTT
* *
32078441 ATACCCCTAGAAGATGAAATGACTGTT
1 ATACCCCCAGAAGATAAAATGACTGTT
32078468 AT
1 AT
32078470 GGCCTTATGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.27
Consensus pattern (27 bp):
ATACCCCCAGAAGATAAAATGACTGTT
Found at i:32084135 original size:37 final size:37
Alignment explanation
Indices: 32084079--32084211 Score: 167
Period size: 37 Copynumber: 3.5 Consensus size: 37
32084069 TTTTGAGTAT
32084079 TGTGATATATGCTTAAATGTTATGTGATTATATGTAA
1 TGTGATATATGCTTAAATGTTATGTGATTATATGTAA
* * * * *
32084116 TGAGGTATATGCTTGAATGTTATGTGATTATACGAGAA
1 TGTGATATATGCTTAAATGTTATGTGATTATATG-TAA
*
32084154 TTGTGATATATGCTTTAAATGTTATGAGATTATATGTGTAA
1 -TGTGATATATGC-TTAAATGTTATGTGATTATA--TGTAA
32084195 TGTGATATATGCTTAAA
1 TGTGATATATGCTTAAA
32084212 AGTGAATATG
Statistics
Matches: 80, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
37 30 0.38
38 2 0.03
39 15 0.19
40 30 0.38
41 2 0.03
42 1 0.01
ACGTcount: A:0.32, C:0.04, G:0.21, T:0.43
Consensus pattern (37 bp):
TGTGATATATGCTTAAATGTTATGTGATTATATGTAA
Found at i:32084185 original size:40 final size:37
Alignment explanation
Indices: 32084079--32084211 Score: 167
Period size: 40 Copynumber: 3.5 Consensus size: 37
32084069 TTTTGAGTAT
*
32084079 TGTGATATATGCTTAAATGTTATGTGATTATATGTAA
1 TGTGATATATGCTTAAATGTTATGTGATTATATGGAA
* * * *
32084116 TGAGGTATATGCTTGAATGTTATGTGATTATACGAGAA
1 TGTGATATATGCTTAAATGTTATGTGATTATATG-GAA
*
32084154 TTGTGATATATGCTTTAAATGTTATGAGATTATATGTGTAA
1 -TGTGATATATGC-TTAAATGTTATGTGATTATATG-G-AA
32084195 TGTGATATATGCTTAAA
1 TGTGATATATGCTTAAA
32084212 AGTGAATATG
Statistics
Matches: 81, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
37 30 0.37
38 2 0.02
39 15 0.19
40 32 0.40
41 2 0.02
ACGTcount: A:0.32, C:0.04, G:0.21, T:0.43
Consensus pattern (37 bp):
TGTGATATATGCTTAAATGTTATGTGATTATATGGAA
Found at i:32089832 original size:26 final size:29
Alignment explanation
Indices: 32089785--32089843 Score: 70
Period size: 26 Copynumber: 2.1 Consensus size: 29
32089775 AAAAGAGCCA
*
32089785 AAAATAAGGCAAAATGAAAGG-AAGA-AG
1 AAAATAAGGCAAAAAGAAAGGAAAGAGAG
* *
32089812 AAAA-AAGTCAAAAAGAGAGGAAAGAGAG
1 AAAATAAGGCAAAAAGAAAGGAAAGAGAG
32089840 AAAA
1 AAAA
32089844 GAAAAAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 13 0.48
27 8 0.30
28 6 0.22
ACGTcount: A:0.66, C:0.03, G:0.25, T:0.05
Consensus pattern (29 bp):
AAAATAAGGCAAAAAGAAAGGAAAGAGAG
Found at i:32095086 original size:24 final size:23
Alignment explanation
Indices: 32095031--32095087 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 23
32095021 TCTTCTAAAA
*
32095031 TTCAAATTATTTATAAAATATATT
1 TTCAAAAT-TTTATAAAATATATT
32095055 TTCCAAAATTTTATAAAAATATATAT
1 TT-CAAAATTTTAT-AAAATATAT-T
*
32095081 TTAAAAA
1 TTCAAAA
32095088 ATTAAAATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
24 7 0.25
25 18 0.64
26 3 0.11
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (23 bp):
TTCAAAATTTTATAAAATATATT
Found at i:32095087 original size:25 final size:24
Alignment explanation
Indices: 32095040--32095090 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 24
32095030 ATTCAAATTA
*
32095040 TTTATAAAATATATTTTCCAAAAT
1 TTTATAAAATATATTTTCAAAAAT
*
32095064 TTTATAAAAATATATATTTAAAAAAT
1 TTTAT-AAAATATAT-TTTCAAAAAT
32095090 T
1 T
32095091 AAAATTATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 5 0.22
25 9 0.39
26 9 0.39
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (24 bp):
TTTATAAAATATATTTTCAAAAAT
Found at i:32102334 original size:50 final size:50
Alignment explanation
Indices: 32102253--32102352 Score: 173
Period size: 50 Copynumber: 2.0 Consensus size: 50
32102243 TGTTGGGAGA
*
32102253 ATGGAAGCTCTAGCGTCTAGAAAAAGCTAAGCAGATAAGGCAAGGAAGTC
1 ATGGAAGCTCCAGCGTCTAGAAAAAGCTAAGCAGATAAGGCAAGGAAGTC
* *
32102303 ATGGAAGCTCCAGCGTCTAGAAAGAGTTAAGCAGATAAGGCAAGGAAGTC
1 ATGGAAGCTCCAGCGTCTAGAAAAAGCTAAGCAGATAAGGCAAGGAAGTC
32102353 TCAAGTGAGT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.39, C:0.16, G:0.29, T:0.16
Consensus pattern (50 bp):
ATGGAAGCTCCAGCGTCTAGAAAAAGCTAAGCAGATAAGGCAAGGAAGTC
Found at i:32106922 original size:7 final size:7
Alignment explanation
Indices: 32106910--32106936 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
32106900 TGAGAACAAT
32106910 AATTTAA
1 AATTTAA
32106917 AATTTAA
1 AATTTAA
32106924 AATTTAA
1 AATTTAA
32106931 AATTTA
1 AATTTA
32106937 TCAAGTTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (7 bp):
AATTTAA
Found at i:32116942 original size:21 final size:21
Alignment explanation
Indices: 32116918--32116960 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
32116908 GAAAAAAAGG
32116918 ATATAATAGAAGGAAAAATTA
1 ATATAATAGAAGGAAAAATTA
32116939 ATATAATAGAAGGAAAAATTA
1 ATATAATAGAAGGAAAAATTA
32116960 A
1 A
32116961 GGTAAATGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.63, C:0.00, G:0.14, T:0.23
Consensus pattern (21 bp):
ATATAATAGAAGGAAAAATTA
Found at i:32118792 original size:54 final size:54
Alignment explanation
Indices: 32118734--32118847 Score: 138
Period size: 54 Copynumber: 2.1 Consensus size: 54
32118724 GTCAGTGTGT
* * *
32118734 TACACGACTTAGCATACGACCTGCGACATGGCCATGTGTCACAAGTCAGAGAGA
1 TACACGACTTAGCACACGACCTGCGACACGGACATGTGTCACAAGTCAGAGAGA
** * * * * *
32118788 TACACGGTTTGGCACATGGCTTGCGAGACGGACATGTGTCACAAGTCAGAGAGA
1 TACACGACTTAGCACACGACCTGCGACACGGACATGTGTCACAAGTCAGAGAGA
32118842 TACACG
1 TACACG
32118848 GTTTGGCACA
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.30, C:0.24, G:0.27, T:0.19
Consensus pattern (54 bp):
TACACGACTTAGCACACGACCTGCGACACGGACATGTGTCACAAGTCAGAGAGA
Found at i:32118848 original size:54 final size:54
Alignment explanation
Indices: 32118766--32118879 Score: 219
Period size: 54 Copynumber: 2.1 Consensus size: 54
32118756 GCGACATGGC
32118766 CATGTGTCACAAGTCAGAGAGATACACGGTTTGGCACATGGCTTGCGAGACGGA
1 CATGTGTCACAAGTCAGAGAGATACACGGTTTGGCACATGGCTTGCGAGACGGA
*
32118820 CATGTGTCACAAGTCAGAGAGATACACGGTTTGGCACATGGCTTGCGAGACGGC
1 CATGTGTCACAAGTCAGAGAGATACACGGTTTGGCACATGGCTTGCGAGACGGA
32118874 CATGTG
1 CATGTG
32118880 ACCCAACATA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 59 1.00
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.21
Consensus pattern (54 bp):
CATGTGTCACAAGTCAGAGAGATACACGGTTTGGCACATGGCTTGCGAGACGGA
Found at i:32118857 original size:27 final size:27
Alignment explanation
Indices: 32118773--32118857 Score: 64
Period size: 27 Copynumber: 3.1 Consensus size: 27
32118763 GGCCATGTGT
32118773 CACAAGTCAGAGAGATACACGGTTTGG
1 CACAAGTCAGAGAGATACACGGTTTGG
* * * * *** * * *
32118800 CACATGGCTTGCGAGACGGAC-ATGTGT
1 CACAAGTC-AGAGAGATACACGGTTTGG
32118827 CACAAGTCAGAGAGATACACGGTTTGG
1 CACAAGTCAGAGAGATACACGGTTTGG
32118854 CACA
1 CACA
32118858 TGGCTTGCGA
Statistics
Matches: 36, Mismatches: 20, Indels: 4
0.60 0.33 0.07
Matches are distributed among these distances:
26 7 0.19
27 22 0.61
28 7 0.19
ACGTcount: A:0.31, C:0.21, G:0.29, T:0.19
Consensus pattern (27 bp):
CACAAGTCAGAGAGATACACGGTTTGG
Found at i:32126774 original size:37 final size:37
Alignment explanation
Indices: 32126725--32126802 Score: 129
Period size: 37 Copynumber: 2.1 Consensus size: 37
32126715 GTCGAGGTTG
*
32126725 ATTGGCACATTGCCTGGGAACCAAGGGTACGATGATT
1 ATTGGCACATTGCCTGGGAACCAAGGGTACGATAATT
* *
32126762 ATTGGCATATTGCCTGGGAACCAAGGGTGCGATAATT
1 ATTGGCACATTGCCTGGGAACCAAGGGTACGATAATT
32126799 ATTG
1 ATTG
32126803 ATTTGTGGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (37 bp):
ATTGGCACATTGCCTGGGAACCAAGGGTACGATAATT
Found at i:32127269 original size:27 final size:27
Alignment explanation
Indices: 32127234--32127304 Score: 90
Period size: 27 Copynumber: 2.6 Consensus size: 27
32127224 CGAAAAGGTT
* *
32127234 GTAATATTACTGAAATACCTTCAAAGG
1 GTAAAATTACTGAAATACCCTCAAAGG
32127261 GTAAAATTA-TCGAAATACCCTCAAAGG
1 GTAAAATTACT-GAAATACCCTCAAAGG
* *
32127288 ATAAAATTACCGAAATA
1 GTAAAATTACTGAAATA
32127305 TAAAATTACT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
26 1 0.03
27 37 0.97
ACGTcount: A:0.46, C:0.15, G:0.13, T:0.25
Consensus pattern (27 bp):
GTAAAATTACTGAAATACCCTCAAAGG
Found at i:32127335 original size:27 final size:27
Alignment explanation
Indices: 32127305--32127420 Score: 108
Period size: 27 Copynumber: 4.3 Consensus size: 27
32127295 TACCGAAATA
* *
32127305 TAAAATTACTGGAATACCCTCAAAAGG
1 TAAAATGACTGGAATACCCTCGAAAGG
* *
32127332 TAAAATGA-TAGATATACCCTTGAAAGG
1 TAAAATGACTGGA-ATACCCTCGAAAGG
* * * *
32127359 TAAAATGACCGTAATACCCCCGAAGGG
1 TAAAATGACTGGAATACCCTCGAAAGG
* * **
32127386 TAAAATGATTGAAATACCCTCGATTGG
1 TAAAATGACTGGAATACCCTCGAAAGG
32127413 TAAAATGA
1 TAAAATGA
32127421 TCGCAACGCC
Statistics
Matches: 71, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
26 3 0.04
27 67 0.94
28 1 0.01
ACGTcount: A:0.42, C:0.16, G:0.18, T:0.23
Consensus pattern (27 bp):
TAAAATGACTGGAATACCCTCGAAAGG
Found at i:32127363 original size:70 final size:70
Alignment explanation
Indices: 32127239--32127374 Score: 175
Period size: 70 Copynumber: 1.9 Consensus size: 70
32127229 AGGTTGTAAT
* * * * *
32127239 ATTACTGAAATACCTTCAAAGGGTAAAATTATCGAAATACCCTCAAAGGATAAAATTACCGAAAT
1 ATTACTGAAATACCCTCAAAAGGTAAAATGATAGAAATACCCTCAAAGGATAAAATGACCGAAAT
32127304 ATAAA
66 ATAAA
* * * *
32127309 ATTACTGGAATACCCTCAAAAGGTAAAATGATAGATATACCCTTGAAAGG-TAAAATGACCGTAA
1 ATTACTGAAATACCCTCAAAAGGTAAAATGATAGAAATACCC-TCAAAGGATAAAATGACCGAAA
32127373 TA
65 TA
32127375 CCCCCGAAGG
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
70 50 0.89
71 6 0.11
ACGTcount: A:0.46, C:0.15, G:0.14, T:0.24
Consensus pattern (70 bp):
ATTACTGAAATACCCTCAAAAGGTAAAATGATAGAAATACCCTCAAAGGATAAAATGACCGAAAT
ATAAA
Found at i:32127421 original size:27 final size:27
Alignment explanation
Indices: 32127317--32127421 Score: 111
Period size: 27 Copynumber: 3.9 Consensus size: 27
32127307 AAATTACTGG
*
32127317 AATACCCTCAAAAGGTAAAATGATAGA
1 AATACCCTCGAAAGGTAAAATGATAGA
* * ** *
32127344 TATACCCTTGAAAGGTAAAATGACCGT
1 AATACCCTCGAAAGGTAAAATGATAGA
* * *
32127371 AATACCCCCGAAGGGTAAAATGATTGA
1 AATACCCTCGAAAGGTAAAATGATAGA
**
32127398 AATACCCTCGATTGGTAAAATGAT
1 AATACCCTCGAAAGGTAAAATGAT
32127422 CGCAACGCCC
Statistics
Matches: 62, Mismatches: 16, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 62 1.00
ACGTcount: A:0.42, C:0.17, G:0.18, T:0.23
Consensus pattern (27 bp):
AATACCCTCGAAAGGTAAAATGATAGA
Found at i:32127615 original size:134 final size:135
Alignment explanation
Indices: 32127428--32127742 Score: 409
Period size: 134 Copynumber: 2.3 Consensus size: 135
32127418 TGATCGCAAC
* * * *
32127428 GCCCCTGTACGGTAAAATGACCGTAATGCCCCTGTAAGGTAAAATGATCGTAATGCCCCTGTAAG
1 GCCCCTGTAGGGTAAAATGACCGTAATGCCCCTATAAGGTAAAATGATCGTAATGCCACTCTAAG
* * * * * * *
32127493 GTAAAATGATCGTAATGCCCTTATAGGGTAAAATGATCGTAATGCTCTTGTAGGGTAAAATAACC
66 GTAAAATGATCGTAATGCCCCTATAGGGTAAAATGACCATAATACCCCTGTAGGATAAAATAACC
32127558 ATAAT
131 ATAAT
* * * ** * *
32127563 GCCTCT-TAGGGTAAAATAACCGTAACGCCCCTATAAGGTTGAATGATCGTAATGCTACTCTAGG
1 GCCCCTGTAGGGTAAAATGACCGTAATGCCCCTATAAGGTAAAATGATCGTAATGCCACTCTAAG
* *
32127627 GTAAAATGATCGTAATGCCCCTGTAGGGTAAAATGACCATAATACCCCTGTAGGATAAAATGACC
66 GTAAAATGATCGTAATGCCCCTATAGGGTAAAATGACCATAATACCCCTGTAGGATAAAATAACC
*
32127692 GTAAT
131 ATAAT
* *
32127697 GCCCCTGTAGGGTAAAATGACCGTAATGCCCC-GTAGGGTAAAATGA
1 GCCCCTGTAGGGTAAAATGACCGTAATGCCCCTATAAGGTAAAATGA
32127743 CTTTTTTGCC
Statistics
Matches: 151, Mismatches: 28, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
134 123 0.81
135 28 0.19
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (135 bp):
GCCCCTGTAGGGTAAAATGACCGTAATGCCCCTATAAGGTAAAATGATCGTAATGCCACTCTAAG
GTAAAATGATCGTAATGCCCCTATAGGGTAAAATGACCATAATACCCCTGTAGGATAAAATAACC
ATAAT
Found at i:32127633 original size:161 final size:161
Alignment explanation
Indices: 32127411--32127740 Score: 426
Period size: 161 Copynumber: 2.0 Consensus size: 161
32127401 ACCCTCGATT
* * * * * *
32127411 GGTAAAATGATCGCAACGCCCCTGTACGGTAAAATGACCGTAATGCCCCTGTAAGGTAAAATGAT
1 GGTAAAATAACCGCAACGCCCCTATAAGGTAAAATGACCGTAATGCCACTCTAAGGTAAAATGAT
* * * * * * * *
32127476 CGTAATGCCCCTGTAAGGTAAAATGATCGTAATGCCCTTATAGGGTAAAATGATCGTAATGCTCT
66 CGTAATGCCCCTGTAAGGTAAAATGACCATAATACCCCTATAGGATAAAATGACCGTAATGCCCC
* *
32127541 TGTAGGGTAAAATAACCATAATGCCTCTTAG
131 TGTAGGGTAAAATAACCATAATGCCCCGTAG
* ** * * *
32127572 GGTAAAATAACCGTAACGCCCCTATAAGGTTGAATGATCGTAATGCTACTCTAGGGTAAAATGAT
1 GGTAAAATAACCGCAACGCCCCTATAAGGTAAAATGACCGTAATGCCACTCTAAGGTAAAATGAT
* *
32127637 CGTAATGCCCCTGTAGGGTAAAATGACCATAATACCCCTGTAGGATAAAATGACCGTAATGCCCC
66 CGTAATGCCCCTGTAAGGTAAAATGACCATAATACCCCTATAGGATAAAATGACCGTAATGCCCC
* *
32127702 TGTAGGGTAAAATGACCGTAATGCCCCGTAG
131 TGTAGGGTAAAATAACCATAATGCCCCGTAG
32127733 GGTAAAAT
1 GGTAAAAT
32127741 GACTTTTTTG
Statistics
Matches: 143, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
161 143 1.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (161 bp):
GGTAAAATAACCGCAACGCCCCTATAAGGTAAAATGACCGTAATGCCACTCTAAGGTAAAATGAT
CGTAATGCCCCTGTAAGGTAAAATGACCATAATACCCCTATAGGATAAAATGACCGTAATGCCCC
TGTAGGGTAAAATAACCATAATGCCCCGTAG
Found at i:32127754 original size:26 final size:27
Alignment explanation
Indices: 32127357--32127743 Score: 386
Period size: 27 Copynumber: 14.4 Consensus size: 27
32127347 ACCCTTGAAA
* * *
32127357 GGTAAAATGACCGTAATACCCCCGAAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
** * * *
32127384 GGTAAAATGATTGAAAT-ACCCTCG-ATT
1 GGTAAAATGACCGTAATGCCCCT-GTA-G
* * * *
32127411 GGTAAAATGATCGCAACGCCCCTGTAC
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
32127438 GGTAAAATGACCGTAATGCCCCTGTAA
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
32127465 GGTAAAATGATCGTAATGCCCCTGTAA
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * *
32127492 GGTAAAATGATCGTAATGCCCTTATAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * *
32127519 GGTAAAATGATCGTAATGCTCTTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * *
32127546 GGTAAAATAACCATAATGCCTCT-TAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * * *
32127572 GGTAAAATAACCGTAACGCCCCTATAA
1 GGTAAAATGACCGTAATGCCCCTGTAG
** * ** *
32127599 GGTTGAATGATCGTAATGCTACTCTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
32127626 GGTAAAATGATCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
32127653 GGTAAAATGACCATAATACCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
32127680 GATAAAATGACCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
32127707 GGTAAAATGACCGTAATGCCCC-GTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
32127733 GGTAAAATGAC
1 GGTAAAATGAC
32127744 TTTTTTGCCC
Statistics
Matches: 303, Mismatches: 52, Indels: 11
0.83 0.14 0.03
Matches are distributed among these distances:
26 42 0.14
27 256 0.84
28 5 0.02
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
GGTAAAATGACCGTAATGCCCCTGTAG
Found at i:32127797 original size:24 final size:24
Alignment explanation
Indices: 32127770--32127825 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
32127760 GTTAAATTAT
32127770 TGATTTGTCTGAGATGTAAATGAC
1 TGATTTGTCTGAGATGTAAATGAC
* * *
32127794 TGATTTGTCTGTGATTTAAATGAT
1 TGATTTGTCTGAGATGTAAATGAC
32127818 TGATTTGT
1 TGATTTGT
32127826 ATGACTGTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.25, C:0.05, G:0.23, T:0.46
Consensus pattern (24 bp):
TGATTTGTCTGAGATGTAAATGAC
Found at i:32127947 original size:27 final size:27
Alignment explanation
Indices: 32127904--32127963 Score: 79
Period size: 27 Copynumber: 2.2 Consensus size: 27
32127894 AGAAGTAGTG
*
32127904 TACTAGTGGCTCTGCCACA-ATCACTGT
1 TACTGGTGGCTCTGCCACATAT-ACTGT
32127931 TACTGGTGGCT-TGGCCACATATACTGT
1 TACTGGTGGCTCT-GCCACATATACTGT
32127958 TACTGG
1 TACTGG
32127964 CAGCTTTGCT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 1 0.03
27 27 0.90
28 2 0.07
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (27 bp):
TACTGGTGGCTCTGCCACATATACTGT
Found at i:32127969 original size:27 final size:27
Alignment explanation
Indices: 32127917--32127969 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
32127907 TAGTGGCTCT
**
32127917 GCCACAATCACTGTTACTGGTGGCTTG
1 GCCACAATCACTGTTACTGGCAGCTTG
32127944 GCCACATAT-ACTGTTACTGGCAGCTT
1 GCCACA-ATCACTGTTACTGGCAGCTT
32127970 TGCTGTGATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.21, C:0.26, G:0.23, T:0.30
Consensus pattern (27 bp):
GCCACAATCACTGTTACTGGCAGCTTG
Found at i:32127993 original size:26 final size:26
Alignment explanation
Indices: 32127951--32128005 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
32127941 TTGGCCACAT
* *
32127951 ATACTGTTACTGGCAGCTTTGCTGTG
1 ATACTGTTACTGCCAGCTTTGCTGCG
*
32127977 ATACTGTTGCTGCCAGCTTTGCTGCG
1 ATACTGTTACTGCCAGCTTTGCTGCG
32128003 ATA
1 ATA
32128006 TTACTAATGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.16, C:0.22, G:0.25, T:0.36
Consensus pattern (26 bp):
ATACTGTTACTGCCAGCTTTGCTGCG
Found at i:32128059 original size:32 final size:32
Alignment explanation
Indices: 32128005--32128195 Score: 220
Period size: 32 Copynumber: 6.0 Consensus size: 32
32127995 TTGCTGCGAT
*
32128005 ATTACTAATGGCTTTGTGCCGATCATATTACC
1 ATTACTGATGGCTTTGTGCCGATCATATTACC
* ** * * *
32128037 ATTACTAATTACTGTGTACCGATCATAGTACC
1 ATTACTGATGGCTTTGTGCCGATCATATTACC
* *
32128069 ATTACTGATGGCTATGTGCCGATCATATTACT
1 ATTACTGATGGCTTTGTGCCGATCATATTACC
* * * *
32128101 ACTACTGATGGCTTTGTGCCAATCATACTACT
1 ATTACTGATGGCTTTGTGCCGATCATATTACC
*
32128133 ATTACTGATGGCTGTGTGCCGATCATATTACC
1 ATTACTGATGGCTTTGTGCCGATCATATTACC
* * * *
32128165 ACTACTTATGGCTTTGTACCAATCATATTAC
1 ATTACTGATGGCTTTGTGCCGATCATATTAC
32128196 TGTATTTATG
Statistics
Matches: 133, Mismatches: 26, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 133 1.00
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (32 bp):
ATTACTGATGGCTTTGTGCCGATCATATTACC
Found at i:32128119 original size:96 final size:96
Alignment explanation
Indices: 32128007--32128196 Score: 254
Period size: 96 Copynumber: 2.0 Consensus size: 96
32127997 GCTGCGATAT
* * * *
32128007 TACTAATGGCTTTGTGCCGATCATATTACCATTACTAATTACTGTGTACCGATCATAGTACCATT
1 TACTAATGGCTTTGTGCCAATCATACTACCATTACTAATGACTGTGTACCGATCATAGTACCACT
* *
32128072 ACTGATGGCTATGTGCCGATCATATTACTAC
66 ACTGATGGCTATGTACCAATCATATTACTAC
* * * * * *
32128103 TACTGATGGCTTTGTGCCAATCATACTACTATTACTGATGGCTGTGTGCCGATCATATTACCACT
1 TACTAATGGCTTTGTGCCAATCATACTACCATTACTAATGACTGTGTACCGATCATAGTACCACT
* *
32128168 ACTTATGGCTTTGTACCAATCATATTACT
66 ACTGATGGCTATGTACCAATCATATTACT
32128197 GTATTTATGG
Statistics
Matches: 80, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
96 80 1.00
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (96 bp):
TACTAATGGCTTTGTGCCAATCATACTACCATTACTAATGACTGTGTACCGATCATAGTACCACT
ACTGATGGCTATGTACCAATCATATTACTAC
Found at i:32128225 original size:22 final size:21
Alignment explanation
Indices: 32128200--32128264 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 21
32128190 TATTACTGTA
32128200 TTTATGGCTTGTAGCCATTCTG
1 TTTATGGCTT-TAGCCATTCTG
* * *
32128222 TTTATAGCTTATAGCTATCCTG
1 TTTATGGCTT-TAGCCATTCTG
*
32128244 TTTACGGCTCTTAGCCATTCT
1 TTTATGGCT-TTAGCCATTCT
32128265 AGTTACTGGC
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
22 33 0.97
23 1 0.03
ACGTcount: A:0.17, C:0.22, G:0.17, T:0.45
Consensus pattern (21 bp):
TTTATGGCTTTAGCCATTCTG
Found at i:32130007 original size:14 final size:14
Alignment explanation
Indices: 32129988--32130027 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
32129978 TTGTTTGCCA
32129988 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
32130002 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
32130016 GGAAAATGTTTT
1 GTAAAATGTTTT
32130028 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:32130036 original size:20 final size:20
Alignment explanation
Indices: 32130011--32130050 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
32130001 CGTAAAATGA
*
32130011 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
32130031 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
32130051 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:32130040 original size:34 final size:35
Alignment explanation
Indices: 32129996--32130062 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
32129986 CAGTAAAATG
*
32129996 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
32130030 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
32130063 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:32130066 original size:14 final size:15
Alignment explanation
Indices: 32129990--32130066 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
32129980 GTTTGCCAGT
* *
32129990 AAAATG-TTTTCCGT
1 AAAATGATTTTCTGG
32130004 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
32130018 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
32130038 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
32130053 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
32130067 TGTTTGGATG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 25 0.50
15 11 0.22
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:32130129 original size:33 final size:31
Alignment explanation
Indices: 32130041--32130127 Score: 95
Period size: 33 Copynumber: 2.6 Consensus size: 31
32130031 TTTCTGTAAA
*
32130041 ATGATTTACTGGAAAATATTTTCTGGTGTTTGG
1 ATGATTT-CT-GAAAATATTTTCTGCTGTTTGG
*
32130074 ATGAATTTGTGTAAAATATTTTCTGCTGTTTGG
1 ATG-ATTTCTG-AAAATATTTTCTGCTGTTTGG
32130107 CA-GATTTCCTGAAAATATTTT
1 -ATGATTT-CTGAAAATATTTT
32130128 TCGAAAAAGT
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
32 15 0.32
33 27 0.57
34 5 0.11
ACGTcount: A:0.26, C:0.08, G:0.20, T:0.46
Consensus pattern (31 bp):
ATGATTTCTGAAAATATTTTCTGCTGTTTGG
Found at i:32135066 original size:850 final size:850
Alignment explanation
Indices: 32133426--32135125 Score: 3400
Period size: 850 Copynumber: 2.0 Consensus size: 850
32133416 TTGTGTGTCG
32133426 AGGGAGCAGTGTGAACGGGTTCCCATCAAAAGAATTATATGATGTACCATTGCTTTTTGACGCTG
1 AGGGAGCAGTGTGAACGGGTTCCCATCAAAAGAATTATATGATGTACCATTGCTTTTTGACGCTG
32133491 TAAGGCAAAATCTGGTTTCATTTTGTTAACTGCAGACTAAAGCCCTCTCCTCACAGCACCATAGT
66 TAAGGCAAAATCTGGTTTCATTTTGTTAACTGCAGACTAAAGCCCTCTCCTCACAGCACCATAGT
32133556 CACCCTCAATAGAGTGTGTCTGGTACATTTCATCGTCAATGGCAAAAAGATTGATGTAGGCACAA
131 CACCCTCAATAGAGTGTGTCTGGTACATTTCATCGTCAATGGCAAAAAGATTGATGTAGGCACAA
32133621 TACTTCACCAGAAAATTGCTGACTACGCCGCAAGGCAAACTAGAATCTTGGTTTTCCCATCACTG
196 TACTTCACCAGAAAATTGCTGACTACGCCGCAAGGCAAACTAGAATCTTGGTTTTCCCATCACTG
32133686 GTGATGTTATTGTGCCAGCAAAGAGGAATCATGCCCCGTGCTGGTAGGGATGTCTTAGAGAATAA
261 GTGATGTTATTGTGCCAGCAAAGAGGAATCATGCCCCGTGCTGGTAGGGATGTCTTAGAGAATAA
32133751 GGGCCCAATCAATGAAGCCTCTATAGAAAGAATGACTCGTGGCAAGGATACGCTGATACTGAGGG
326 GGGCCCAATCAATGAAGCCTCTATAGAAAGAATGACTCGTGGCAAGGATACGCTGATACTGAGGG
32133816 AGGCAGAAACTAGCAAGACAAGGAAAGGCAAAACTAAAGCCAACAGAAAAGGAACAAACCTGAAT
391 AGGCAGAAACTAGCAAGACAAGGAAAGGCAAAACTAAAGCCAACAGAAAAGGAACAAACCTGAAT
32133881 GTAGAGACATCATTATGGTGCAAATTGAAGTATGTCAAAAAAATGATCAACTCCATTAATAATAG
456 GTAGAGACATCATTATGGTGCAAATTGAAGTATGTCAAAAAAATGATCAACTCCATTAATAATAG
32133946 GCAGATCAGGCTTGTCGATATAGTAGAAGGTATGCACAAATCCCAGAATTTTTTTTATACTTATA
521 GCAGATCAGGCTTGTCGATATAGTAGAAGGTATGCACAAATCCCAGAATTTTTTTTATACTTATA
32134011 CCAAAGCCTGGAACAGTTCTATTGTAGCCACATTAGGCCAACTGAGCTTATCCCCACTACCGAAA
586 CCAAAGCCTGGAACAGTTCTATTGTAGCCACATTAGGCCAACTGAGCTTATCCCCACTACCGAAA
32134076 TTCCTAGGGTTTCCACCAATCATCCAAAATTATAACCTCTCTTCAATGAATGAAGACTTAGAAGA
651 TTCCTAGGGTTTCCACCAATCATCCAAAATTATAACCTCTCTTCAATGAATGAAGACTTAGAAGA
32134141 CCGAGAGAGATCAATGGCATCCCCACCCATTGTGCAGGTCTCTGATAATGAGAAAGAAGAGGAGT
716 CCGAGAGAGATCAATGGCATCCCCACCCATTGTGCAGGTCTCTGATAATGAGAAAGAAGAGGAGT
32134206 CTAAGGACACTGAAGAATGCCTACGAAAGATTGATAGCTTGTTCGAGGATGGTATTTTTGCTGAT
781 CTAAGGACACTGAAGAATGCCTACGAAAGATTGATAGCTTGTTCGAGGATGGTATTTTTGCTGAT
32134271 CAAAA
846 CAAAA
32134276 AGGGAGCAGTGTGAACGGGTTCCCATCAAAAGAATTATATGATGTACCATTGCTTTTTGACGCTG
1 AGGGAGCAGTGTGAACGGGTTCCCATCAAAAGAATTATATGATGTACCATTGCTTTTTGACGCTG
32134341 TAAGGCAAAATCTGGTTTCATTTTGTTAACTGCAGACTAAAGCCCTCTCCTCACAGCACCATAGT
66 TAAGGCAAAATCTGGTTTCATTTTGTTAACTGCAGACTAAAGCCCTCTCCTCACAGCACCATAGT
32134406 CACCCTCAATAGAGTGTGTCTGGTACATTTCATCGTCAATGGCAAAAAGATTGATGTAGGCACAA
131 CACCCTCAATAGAGTGTGTCTGGTACATTTCATCGTCAATGGCAAAAAGATTGATGTAGGCACAA
32134471 TACTTCACCAGAAAATTGCTGACTACGCCGCAAGGCAAACTAGAATCTTGGTTTTCCCATCACTG
196 TACTTCACCAGAAAATTGCTGACTACGCCGCAAGGCAAACTAGAATCTTGGTTTTCCCATCACTG
32134536 GTGATGTTATTGTGCCAGCAAAGAGGAATCATGCCCCGTGCTGGTAGGGATGTCTTAGAGAATAA
261 GTGATGTTATTGTGCCAGCAAAGAGGAATCATGCCCCGTGCTGGTAGGGATGTCTTAGAGAATAA
32134601 GGGCCCAATCAATGAAGCCTCTATAGAAAGAATGACTCGTGGCAAGGATACGCTGATACTGAGGG
326 GGGCCCAATCAATGAAGCCTCTATAGAAAGAATGACTCGTGGCAAGGATACGCTGATACTGAGGG
32134666 AGGCAGAAACTAGCAAGACAAGGAAAGGCAAAACTAAAGCCAACAGAAAAGGAACAAACCTGAAT
391 AGGCAGAAACTAGCAAGACAAGGAAAGGCAAAACTAAAGCCAACAGAAAAGGAACAAACCTGAAT
32134731 GTAGAGACATCATTATGGTGCAAATTGAAGTATGTCAAAAAAATGATCAACTCCATTAATAATAG
456 GTAGAGACATCATTATGGTGCAAATTGAAGTATGTCAAAAAAATGATCAACTCCATTAATAATAG
32134796 GCAGATCAGGCTTGTCGATATAGTAGAAGGTATGCACAAATCCCAGAATTTTTTTTATACTTATA
521 GCAGATCAGGCTTGTCGATATAGTAGAAGGTATGCACAAATCCCAGAATTTTTTTTATACTTATA
32134861 CCAAAGCCTGGAACAGTTCTATTGTAGCCACATTAGGCCAACTGAGCTTATCCCCACTACCGAAA
586 CCAAAGCCTGGAACAGTTCTATTGTAGCCACATTAGGCCAACTGAGCTTATCCCCACTACCGAAA
32134926 TTCCTAGGGTTTCCACCAATCATCCAAAATTATAACCTCTCTTCAATGAATGAAGACTTAGAAGA
651 TTCCTAGGGTTTCCACCAATCATCCAAAATTATAACCTCTCTTCAATGAATGAAGACTTAGAAGA
32134991 CCGAGAGAGATCAATGGCATCCCCACCCATTGTGCAGGTCTCTGATAATGAGAAAGAAGAGGAGT
716 CCGAGAGAGATCAATGGCATCCCCACCCATTGTGCAGGTCTCTGATAATGAGAAAGAAGAGGAGT
32135056 CTAAGGACACTGAAGAATGCCTACGAAAGATTGATAGCTTGTTCGAGGATGGTATTTTTGCTGAT
781 CTAAGGACACTGAAGAATGCCTACGAAAGATTGATAGCTTGTTCGAGGATGGTATTTTTGCTGAT
32135121 CAAAA
846 CAAAA
32135126 GGATACTTTT
Statistics
Matches: 850, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
850 850 1.00
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (850 bp):
AGGGAGCAGTGTGAACGGGTTCCCATCAAAAGAATTATATGATGTACCATTGCTTTTTGACGCTG
TAAGGCAAAATCTGGTTTCATTTTGTTAACTGCAGACTAAAGCCCTCTCCTCACAGCACCATAGT
CACCCTCAATAGAGTGTGTCTGGTACATTTCATCGTCAATGGCAAAAAGATTGATGTAGGCACAA
TACTTCACCAGAAAATTGCTGACTACGCCGCAAGGCAAACTAGAATCTTGGTTTTCCCATCACTG
GTGATGTTATTGTGCCAGCAAAGAGGAATCATGCCCCGTGCTGGTAGGGATGTCTTAGAGAATAA
GGGCCCAATCAATGAAGCCTCTATAGAAAGAATGACTCGTGGCAAGGATACGCTGATACTGAGGG
AGGCAGAAACTAGCAAGACAAGGAAAGGCAAAACTAAAGCCAACAGAAAAGGAACAAACCTGAAT
GTAGAGACATCATTATGGTGCAAATTGAAGTATGTCAAAAAAATGATCAACTCCATTAATAATAG
GCAGATCAGGCTTGTCGATATAGTAGAAGGTATGCACAAATCCCAGAATTTTTTTTATACTTATA
CCAAAGCCTGGAACAGTTCTATTGTAGCCACATTAGGCCAACTGAGCTTATCCCCACTACCGAAA
TTCCTAGGGTTTCCACCAATCATCCAAAATTATAACCTCTCTTCAATGAATGAAGACTTAGAAGA
CCGAGAGAGATCAATGGCATCCCCACCCATTGTGCAGGTCTCTGATAATGAGAAAGAAGAGGAGT
CTAAGGACACTGAAGAATGCCTACGAAAGATTGATAGCTTGTTCGAGGATGGTATTTTTGCTGAT
CAAAA
Found at i:32135174 original size:21 final size:21
Alignment explanation
Indices: 32135150--32135197 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
32135140 AGAAAAAAAA
** *
32135150 TTGTTGCTGCAGAAGAGGAAG
1 TTGTTGCTAAAGAAGAAGAAG
32135171 TTGTTGCTAAAGAAGAAGAAG
1 TTGTTGCTAAAGAAGAAGAAG
32135192 TTGTTG
1 TTGTTG
32135198 AAAATGAGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.31, C:0.06, G:0.33, T:0.29
Consensus pattern (21 bp):
TTGTTGCTAAAGAAGAAGAAG
Found at i:32152670 original size:15 final size:15
Alignment explanation
Indices: 32152633--32152663 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
32152623 TTCTCATGGC
*
32152633 TTAATCGATTGATCA
1 TTAATCGAGTGATCA
32152648 TTAATCGAGTGATCA
1 TTAATCGAGTGATCA
32152663 T
1 T
32152664 ACATCGAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.13, G:0.16, T:0.39
Consensus pattern (15 bp):
TTAATCGAGTGATCA
Found at i:32159848 original size:49 final size:48
Alignment explanation
Indices: 32159795--32159887 Score: 116
Period size: 49 Copynumber: 1.9 Consensus size: 48
32159785 GCGTTAATAA
* * * *
32159795 CATAGTTGGATTTTTATTTCCTTTGTTT-TTCTCTCCCTCATTTGGCTGC
1 CATAGCTGGATTATCATTTCCTTTGTTTCTTC-CT-ACTCATTTGGCTGC
*
32159844 CATAGCTGGATTATCATTTTCTTTGTTTCTTCCTACTCATTTGG
1 CATAGCTGGATTATCATTTCCTTTGTTTCTTCCTACTCATTTGG
32159888 TTAGGACTCC
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
48 9 0.24
49 26 0.68
50 3 0.08
ACGTcount: A:0.13, C:0.22, G:0.14, T:0.52
Consensus pattern (48 bp):
CATAGCTGGATTATCATTTCCTTTGTTTCTTCCTACTCATTTGGCTGC
Found at i:32164237 original size:28 final size:28
Alignment explanation
Indices: 32164180--32164240 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
32164170 AAGTTAATAC
* *
32164180 AATAATATATATATATAATTATTGACAA
1 AATAATATATATATATAAATATTCACAA
* *
32164208 AATAATATCTATATTTAACATATTCA-AA
1 AATAATATATATATATAA-ATATTCACAA
32164236 AATAA
1 AATAA
32164241 AAACTAAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 23 0.82
29 5 0.18
ACGTcount: A:0.54, C:0.07, G:0.02, T:0.38
Consensus pattern (28 bp):
AATAATATATATATATAAATATTCACAA
Found at i:32169935 original size:25 final size:25
Alignment explanation
Indices: 32169901--32169950 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
32169891 GTTGATTTCT
32169901 TATGTTTCATGAACAAGTATACTAA
1 TATGTTTCATGAACAAGTATACTAA
32169926 TATGTTTCATGAACAAGTATACTAA
1 TATGTTTCATGAACAAGTATACTAA
32169951 CTTGTGAGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (25 bp):
TATGTTTCATGAACAAGTATACTAA
Found at i:32181190 original size:15 final size:15
Alignment explanation
Indices: 32181170--32181219 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
32181160 TATAAGAAAT
*
32181170 ATAATAACAATAGTA
1 ATAATAATAATAGTA
* *
32181185 ATAATATTAATATTA
1 ATAATAATAATAGTA
*
32181200 ATAATAGTAATAGTA
1 ATAATAATAATAGTA
32181215 ATAAT
1 ATAAT
32181220 GAAGTTCAAG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.56, C:0.02, G:0.06, T:0.36
Consensus pattern (15 bp):
ATAATAATAATAGTA
Found at i:32181867 original size:46 final size:46
Alignment explanation
Indices: 32181780--32181868 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 46
32181770 CAAAACGACG
32181780 TCGTTTTGGGGTGTCTATATAAGTAAAAACAAATCTTAAAAAAAAA
1 TCGTTTTGGGGTGTCTATATAAGTAAAAACAAATCTTAAAAAAAAA
32181826 TCGTTTTGGGGT-TCTATATAAGTAAAAACAAATCTTAAAAAAA
1 TCGTTTTGGGGTGTCTATATAAGTAAAAACAAATCTTAAAAAAA
32181869 TATTTGCAAG
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
45 31 0.72
46 12 0.28
ACGTcount: A:0.45, C:0.09, G:0.15, T:0.31
Consensus pattern (46 bp):
TCGTTTTGGGGTGTCTATATAAGTAAAAACAAATCTTAAAAAAAAA
Found at i:32183069 original size:132 final size:131
Alignment explanation
Indices: 32182919--32183429 Score: 538
Period size: 132 Copynumber: 3.9 Consensus size: 131
32182909 TGTAATGTTT
* * * * *
32182919 AACCTACTCCATTGCTGCTCA-GAGAGATAAGG-CTAGTGACCTAAATCTTCTTCCCTACTACCT
1 AACCTACTCCACTGCTGCTCAGGA-AGAT-AGGATTAGTGGCTTAAATCTGCTTCCCTACTACCT
* * * * *
32182982 TGGGAAGATAAGATTCGTCGTCTTTGATCTGCTCCACTACTGCTCAAGGAAACATGATCTGCAAT
64 TGGGAAGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAAACA-GATCTACATT
32183047 CTTC
128 CTTC
* *
32183051 AACCTACTCCACTCCTGCTCAGGGAA-ATAGGATTGGTGGCTTAAATCTGCTTCCCTACTACCTT
1 AACCTACTCCACTGCTGCTCA-GGAAGATAGGATTAGTGGCTTAAATCTGCTTCCCTACTACCTT
* * * *
32183115 GGGAAGATAAGATTCGCCATTTTTTGT-TTTGATCTACTCCACTACTGCTTAGGGAGACAAGATC
65 GGGAAGATAAGATTCG-------TCGTCTTCGATCTGCTCCACTACTGCTTAGGGAAAC-AGATC
* *
32183179 TACATTATTT
122 TACATTCTTC
* * *
32183189 AACCTACTCCGCTGCTGCTCAGGAAGATAGGATTAGTGGTTTAAATCTGCTTCCCTACTACCTTA
1 AACCTACTCCACTGCTGCTCAGGAAGATAGGATTAGTGGCTTAAATCTGCTTCCCTACTACCTTG
* * * *
32183254 AGAAGATAAGATTAAC-T-ATCTTCGATCTGCTCCGCTACTGCTTAGGGAGACCAGATCTACATT
66 GGAAGATAAGATT--CGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGA-AACAGATCTACATT
32183317 CTTC
128 CTTC
* * *
32183321 AACCTACTCCACTACTGCTCAGGAAGAT----TTAGTGGCTTAAATCTGCTTCTCTATTACCTTG
1 AACCTACTCCACTGCTGCTCAGGAAGATAGGATTAGTGGCTTAAATCTGCTTCCCTACTACCTTG
* * *
32183382 GGAAGATAAGATTTGTCGTCTTCGATCTGCTCAACTACTTCTTAGGGA
66 GGAAGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGA
32183430 GATAGGATCT
Statistics
Matches: 319, Mismatches: 42, Indels: 40
0.80 0.10 0.10
Matches are distributed among these distances:
127 1 0.00
128 68 0.21
131 4 0.01
132 129 0.40
133 2 0.01
134 2 0.01
137 4 0.01
138 104 0.33
139 4 0.01
140 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (131 bp):
AACCTACTCCACTGCTGCTCAGGAAGATAGGATTAGTGGCTTAAATCTGCTTCCCTACTACCTTG
GGAAGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAAACAGATCTACATTCTT
C
Found at i:32191919 original size:19 final size:19
Alignment explanation
Indices: 32191884--32191923 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
32191874 TTCCATTTAG
32191884 AAAACTTTACTAGAAAACA
1 AAAACTTTACTAGAAAACA
*
32191903 AAAATCTTTAC-ATAAAACA
1 AAAA-CTTTACTAGAAAACA
32191922 AA
1 AA
32191924 TTACATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.60, C:0.15, G:0.03, T:0.23
Consensus pattern (19 bp):
AAAACTTTACTAGAAAACA
Found at i:32195459 original size:15 final size:15
Alignment explanation
Indices: 32195439--32195488 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
32195429 TATAAGAAAT
*
32195439 ATAATAACAATAGTA
1 ATAATAATAATAGTA
* *
32195454 ATAATATTAATATTA
1 ATAATAATAATAGTA
*
32195469 ATAATAGTAATAGTA
1 ATAATAATAATAGTA
32195484 ATAAT
1 ATAAT
32195489 GAAGTTCAAG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.56, C:0.02, G:0.06, T:0.36
Consensus pattern (15 bp):
ATAATAATAATAGTA
Found at i:32212209 original size:46 final size:46
Alignment explanation
Indices: 32212151--32212303 Score: 145
Period size: 46 Copynumber: 3.3 Consensus size: 46
32212141 TTTCTATAGT
*
32212151 TAAAAGGTAAAATTATGTTGTTTTGATAAAGGTTTACAGATTAAGA
1 TAAAAGGCAAAATTATGTTGTTTTGATAAAGGTTTACAGATTAAGA
* ** * *
32212197 TAAAAGGCAAAATCATTATATTGTTTATG-T--A-GTTAAATA-ATCTTTAGT
1 TAAAAGGC-AAA--ATTATGTTGTTT-TGATAAAGGTT---TACAGATTAAGA
*
32212245 TAAAAGGTAAAATTATGTTGTTTTGATAAAGGTTTACAGATTAAGA
1 TAAAAGGCAAAATTATGTTGTTTTGATAAAGGTTTACAGATTAAGA
32212291 TAAAAGGCAAAAT
1 TAAAAGGCAAAAT
32212304 CATTATATTG
Statistics
Matches: 82, Mismatches: 13, Indels: 24
0.69 0.11 0.20
Matches are distributed among these distances:
44 2 0.02
45 14 0.17
46 27 0.33
47 8 0.10
48 15 0.18
49 14 0.17
50 2 0.02
ACGTcount: A:0.42, C:0.04, G:0.17, T:0.37
Consensus pattern (46 bp):
TAAAAGGCAAAATTATGTTGTTTTGATAAAGGTTTACAGATTAAGA
Found at i:32212215 original size:49 final size:49
Alignment explanation
Indices: 32212162--32212316 Score: 155
Period size: 49 Copynumber: 3.2 Consensus size: 49
32212152 AAAAGGTAAA
*
32212162 ATTATGTTGTTTTGATAAAGGTTTACAGATTAAGATAAAAGGCAAAATC
1 ATTATATTGTTTTGATAAAGGTTTACAGATTAAGATAAAAGGCAAAATC
** * * *
32212211 ATTATATTGTTTATG-T--A-GTTAAATA-ATCTTTAGTTAAAAGG-TAAA--
1 ATTATATTGTTT-TGATAAAGGTT---TACAGATTAAGATAAAAGGCAAAATC
*
32212256 ATTATGTTGTTTTGATAAAGGTTTACAGATTAAGATAAAAGGCAAAATC
1 ATTATATTGTTTTGATAAAGGTTTACAGATTAAGATAAAAGGCAAAATC
32212305 ATTATATTGTTT
1 ATTATATTGTTT
32212317 ATGTAGTTAA
Statistics
Matches: 81, Mismatches: 13, Indels: 24
0.69 0.11 0.20
Matches are distributed among these distances:
44 2 0.02
45 14 0.17
46 15 0.19
47 8 0.10
48 15 0.19
49 25 0.31
50 2 0.02
ACGTcount: A:0.39, C:0.05, G:0.16, T:0.40
Consensus pattern (49 bp):
ATTATATTGTTTTGATAAAGGTTTACAGATTAAGATAAAAGGCAAAATC
Found at i:32212256 original size:94 final size:94
Alignment explanation
Indices: 32212147--32212334 Score: 376
Period size: 94 Copynumber: 2.0 Consensus size: 94
32212137 ACCTTTTCTA
32212147 TAGTTAAAAGGTAAAATTATGTTGTTTTGATAAAGGTTTACAGATTAAGATAAAAGGCAAAATCA
1 TAGTTAAAAGGTAAAATTATGTTGTTTTGATAAAGGTTTACAGATTAAGATAAAAGGCAAAATCA
32212212 TTATATTGTTTATGTAGTTAAATAATCTT
66 TTATATTGTTTATGTAGTTAAATAATCTT
32212241 TAGTTAAAAGGTAAAATTATGTTGTTTTGATAAAGGTTTACAGATTAAGATAAAAGGCAAAATCA
1 TAGTTAAAAGGTAAAATTATGTTGTTTTGATAAAGGTTTACAGATTAAGATAAAAGGCAAAATCA
32212306 TTATATTGTTTATGTAGTTAAATAATCTT
66 TTATATTGTTTATGTAGTTAAATAATCTT
32212335 GTACTTCGTT
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
94 94 1.00
ACGTcount: A:0.40, C:0.04, G:0.16, T:0.39
Consensus pattern (94 bp):
TAGTTAAAAGGTAAAATTATGTTGTTTTGATAAAGGTTTACAGATTAAGATAAAAGGCAAAATCA
TTATATTGTTTATGTAGTTAAATAATCTT
Found at i:32213209 original size:22 final size:21
Alignment explanation
Indices: 32213163--32213255 Score: 66
Period size: 22 Copynumber: 4.3 Consensus size: 21
32213153 TTCATTAATG
**
32213163 ATTTTAATGATTTTTAAATAT
1 ATTTTAATGATTTTTTTATAT
32213184 ATTTTATATGATTTTTTT-TAT
1 ATTTTA-ATGATTTTTTTATAT
32213205 AATTTGTAATGATTTTTGGTTATATT
1 -ATTT-TAATGATTTTT--TTATA-T
* * *
32213231 TTTTTTATGA-ATTTTTATA-
1 ATTTTAATGATTTTTTTATAT
32213250 ATTTTA
1 ATTTTA
32213256 GAATGAAGCT
Statistics
Matches: 58, Mismatches: 7, Indels: 16
0.72 0.09 0.20
Matches are distributed among these distances:
19 4 0.07
21 14 0.24
22 22 0.38
23 5 0.09
24 7 0.12
25 5 0.09
26 1 0.02
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (21 bp):
ATTTTAATGATTTTTTTATAT
Found at i:32215056 original size:22 final size:23
Alignment explanation
Indices: 32215026--32215068 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
32215016 ACATCAAAAC
* *
32215026 AGGCTTTTAGCGGC-CTTTTTTT
1 AGGCCTTTAGCAGCGCTTTTTTT
32215048 AGGCCTTTAGCAGCGCTTTTT
1 AGGCCTTTAGCAGCGCTTTTT
32215069 AGCGCCGCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.12, C:0.21, G:0.23, T:0.44
Consensus pattern (23 bp):
AGGCCTTTAGCAGCGCTTTTTTT
Found at i:32215216 original size:43 final size:43
Alignment explanation
Indices: 32215164--32215327 Score: 240
Period size: 43 Copynumber: 3.8 Consensus size: 43
32215154 GTGTTTAAAG
* * * *
32215164 CGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTTACCACAAA
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTAAACACAAA
* *
32215207 CGCCACTAAAGAACATGATCTTTAGCGGCGCTTTAAACTCAAA
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTAAACACAAA
* *
32215250 TGCCGCTAAAGAACATGATCTTTAATC-GCGCTTTAAACACAAA
1 CGCCGCTAAAGAACATGATCTTT-AGCGGCGCTTTAAACACAAA
32215293 CGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTA
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTA
32215328 GATAAAAGCG
Statistics
Matches: 107, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
42 2 0.02
43 103 0.96
44 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (43 bp):
CGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTAAACACAAA
Found at i:32215345 original size:43 final size:42
Alignment explanation
Indices: 32215159--32215346 Score: 207
Period size: 43 Copynumber: 4.4 Consensus size: 42
32215149 CGTTTGTGTT
* * * * *
32215159 TAAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTTAC
1 TAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTAAA
* *
32215201 CACAAACGCCACTAAAGAACATGATCTTTAGCGGCGCTTTAAA
1 TA-AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTAAA
* * *
32215244 CTCAAATGCCGCTAAAGAACATGATCTTTAATC-GCGCTTTAAA
1 -TAAAACGCCGCTAAAGAACATGATCTTT-AGCGGCGCTTTAAA
* *
32215287 CACAAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTAGA
1 TA-AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTAAA
*
32215330 TAAAAGCGCCACTAAAG
1 TAAAA-CGCCGCTAAAG
32215347 GTCATAAAAA
Statistics
Matches: 121, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
42 6 0.05
43 113 0.93
44 2 0.02
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (42 bp):
TAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTAAA
Found at i:32215345 original size:86 final size:87
Alignment explanation
Indices: 32215160--32215346 Score: 254
Period size: 86 Copynumber: 2.2 Consensus size: 87
32215150 GTTTGTGTTT
* * * *
32215160 AAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTTACCACAAACGCCACTAAAGAACATGA
1 AAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTAAACACAAACGCCACTAAAGAACATGA
*
32215225 TCTTTAGCGGCGCTTTAAACTC
66 TCTTTAGCGGCGCTTTAAACTA
* * *
32215247 AAA-TGCCGCTAAAGAACATGATCTTTAATC-GCGCTTTAAACACAAACGCCGCTAAAGAACATG
1 AAAGCGCCGCTAAAGAACATGATCTTT-AGCGGCGCTTTAAACACAAACGCCACTAAAGAACATG
*
32215310 ATCTTTAGCGGCGCTTTAGA-TA
65 ATCTTTAGCGGCGCTTTAAACTA
*
32215332 AAAGCGCCACTAAAG
1 AAAGCGCCGCTAAAG
32215347 GTCATAAAAA
Statistics
Matches: 87, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
85 4 0.05
86 78 0.90
87 5 0.06
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.24
Consensus pattern (87 bp):
AAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTAAACACAAACGCCACTAAAGAACATGA
TCTTTAGCGGCGCTTTAAACTA
Found at i:32219855 original size:7 final size:7
Alignment explanation
Indices: 32219843--32219998 Score: 57
Period size: 7 Copynumber: 21.9 Consensus size: 7
32219833 ACTAGTTAAT
32219843 CTAAACC
1 CTAAACC
32219850 CTAAACC
1 CTAAACC
*
32219857 ATAAA-C
1 CTAAACC
*
32219863 TTAAACC
1 CTAAACC
*
32219870 TTAAAACC
1 CT-AAACC
32219878 CTAAACC
1 CTAAACC
32219885 CATAAACC
1 C-TAAACC
*
32219893 CTTAA-C
1 CTAAACC
*
32219899 ATATAACC
1 CTA-AACC
* *
32219907 TTTAAAAC
1 -CTAAACC
*
32219915 TTAAA-C
1 CTAAACC
* *
32219921 CTCAGCC
1 CTAAACC
*
32219928 TTTAAACC
1 -CTAAACC
*
32219936 TTAAACC
1 CTAAACC
* *
32219943 ATAACCC
1 CTAAACC
32219950 CTAAACC
1 CTAAACC
*
32219957 CATAATCC
1 C-TAAACC
*
32219965 ATAAACC
1 CTAAACC
* *
32219972 TTAAACT
1 CTAAACC
32219979 CTAAACC
1 CTAAACC
* *
32219986 ATATACC
1 CTAAACC
32219993 CTAAAC
1 CTAAAC
32219999 TATAGTGATA
Statistics
Matches: 111, Mismatches: 29, Indels: 18
0.70 0.18 0.11
Matches are distributed among these distances:
6 10 0.09
7 73 0.66
8 26 0.23
9 2 0.02
ACGTcount: A:0.44, C:0.32, G:0.01, T:0.23
Consensus pattern (7 bp):
CTAAACC
Found at i:32219954 original size:21 final size:21
Alignment explanation
Indices: 32219844--32219998 Score: 86
Period size: 21 Copynumber: 7.2 Consensus size: 21
32219834 CTAGTTAATC
* *
32219844 TAAACCCTAAACCATAA-ACT
1 TAAACCTTAAACCATAACCCT
* *
32219864 TAAACCTTAAAACCCTAAACCCA
1 TAAACCTT-AAACCAT-AACCCT
* *
32219887 TAAACCCTT-AACATATAACCTT
1 TAAA-CCTTAAAC-CATAACCCT
* * *
32219909 TAAAACTTAAACC-TCAGCCTT
1 TAAACCTTAAACCAT-AACCCT
*
32219930 TAAACCTTAAACCATAACCCC
1 TAAACCTTAAACCATAACCCT
* * *
32219951 TAAACCCATAATCCATAAACCT
1 TAAA-CCTTAAACCATAACCCT
32219973 TAAA-CTCTAAACCATATACCC-
1 TAAACCT-TAAACCATA-ACCCT
32219994 TAAAC
1 TAAAC
32219999 TATAGTGATA
Statistics
Matches: 101, Mismatches: 22, Indels: 22
0.70 0.15 0.15
Matches are distributed among these distances:
20 9 0.09
21 45 0.45
22 37 0.37
23 6 0.06
24 4 0.04
ACGTcount: A:0.45, C:0.32, G:0.01, T:0.23
Consensus pattern (21 bp):
TAAACCTTAAACCATAACCCT
Found at i:32220364 original size:91 final size:92
Alignment explanation
Indices: 32220209--32220385 Score: 320
Period size: 91 Copynumber: 1.9 Consensus size: 92
32220199 ACTTAAAAAC
* *
32220209 GCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTC
1 GCCACTAAATCCCCGAAAGATCAGAAAACGGCGTCGTTGGGCTTAGGATTTTTTGCGGCGCTTTC
32220274 CCAAAAACGCCGCT-AAAGCCAAAAGT
66 CCAAAAACGCCGCTGAAAGCCAAAAGT
*
32220300 GCCACTAAATCCCCGAAAGATTAGAAAACGGCGTCGTTGGGCTTAGGATTTTTTGCGGCGCTTTC
1 GCCACTAAATCCCCGAAAGATCAGAAAACGGCGTCGTTGGGCTTAGGATTTTTTGCGGCGCTTTC
32220365 CCAAAAACGCCGCTGAAAGCC
66 CCAAAAACGCCGCTGAAAGCC
32220386 CTGAGCATTA
Statistics
Matches: 82, Mismatches: 3, Indels: 1
0.95 0.03 0.01
Matches are distributed among these distances:
91 76 0.93
92 6 0.07
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.22
Consensus pattern (92 bp):
GCCACTAAATCCCCGAAAGATCAGAAAACGGCGTCGTTGGGCTTAGGATTTTTTGCGGCGCTTTC
CCAAAAACGCCGCTGAAAGCCAAAAGT
Found at i:32220585 original size:114 final size:114
Alignment explanation
Indices: 32220304--32220949 Score: 956
Period size: 114 Copynumber: 5.7 Consensus size: 114
32220294 AAAAGTGCCA
* * * *
32220304 CTAAATCCCCGAAAGATTAGAAAACGGCGTCGTTGGGCTTAGGATTTTTTGCGGCGCTTTCCCAA
1 CTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCTCAA
*
32220369 AAACGCCGCTGAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCG
66 AAACGCCGCT-AAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCTG
* *
32220419 CTAAATCCCCAAAAGCTCAGAAAAAGGCGTCGTTGGG-TTAGGTTTTTTTGCGGCGCTTTCTCAA
1 CTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCTCAA
* *
32220483 AAACGCCGCTAAAGCCCTGAACATTAGCGGCGCTTTATTAAAAACGCTG
66 AAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCTG
* * * *
32220532 CTAAATCCACGAAAGCTCAGAAAACGGCATCATTGGGCTTAGGTTTTTTTGCGGCTCTTTCTCAA
1 CTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCTCAA
* * ** * *
32220597 AATCACTACTAAAGCCCTGAACATTAGCGGCGCTTTATTAAAAACG-TCG
66 AAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCT-G
* *
32220646 CTAAATCCACGAAAGCTCAGAAAACGGCATCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCTCAA
1 CTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCTCAA
* * *
32220711 AAACGGCGCTAAAGTCCTGAGCATTAGCGGCGCTTTCTTAAGAACGCTG
66 AAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCTG
* *
32220760 CTAAATCCCCGAAAGCTCAGAAAATGACGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCTCAA
1 CTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCTCAA
*
32220825 AAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCG
66 AAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCTG
* * * * **
32220874 CTAAATCCCCGAAAGCTCGGAAACCGGCGTCGTTGGGCTTAGG-TTTTTAGCGGCGCTGTCTGGA
1 CTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCTCAA
32220938 AAACGCCGCTAA
66 AAACGCCGCTAA
32220950 TGCTTATTTT
Statistics
Matches: 482, Mismatches: 46, Indels: 8
0.90 0.09 0.01
Matches are distributed among these distances:
113 98 0.20
114 350 0.73
115 34 0.07
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (114 bp):
CTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCTCAA
AAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCTG
Done.