Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47972186
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2603476 characters in sequence are not A, C, G, or T
File 94 of 145
Found at i:32224337 original size:22 final size:21
Alignment explanation
Indices: 32224312--32224355 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
32224302 AAAAAGTTAA
32224312 ATTTAATATCAACAAAATCATT
1 ATTTAATATCAACAAAAT-ATT
* *
32224334 ATTTAATATTAACCAAATATT
1 ATTTAATATCAACAAAATATT
32224355 A
1 A
32224356 AGAATATCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (21 bp):
ATTTAATATCAACAAAATATT
Found at i:32226225 original size:2 final size:2
Alignment explanation
Indices: 32226218--32226245 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
32226208 AATTATTGTT
32226218 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32226246 GTGTCTATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:32226527 original size:43 final size:43
Alignment explanation
Indices: 32226449--32226673 Score: 308
Period size: 43 Copynumber: 5.3 Consensus size: 43
32226439 CGCTAAAAGT
* * *
32226449 CATGACCTTTAGCGGCAC-TTTCCCACAAACGCCGCTATAGAC
1 CATGACCTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGAC
* *
32226491 CATGACCTTTAGCAGCGCTTTTCCCACAAACGCCGCTAAAGAC
1 CATGACCTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGAC
** *
32226534 CATGACCTTTAATGGCGCTTTTACCACAAACGCCGCTATAGAC
1 CATGACCTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGAC
* * **
32226577 CACGATCTTTAGCGATGCTTTTACCACAAACGCCGCTAAAGAC
1 CATGACCTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGAC
* * *
32226620 TATGACCTTTAGCGGCGTTTTTTCCACAAACGCCGCTAAAGAC
1 CATGACCTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGAC
32226663 CATGACCTTTA
1 CATGACCTTTA
32226674 NNNNNNNNNN
Statistics
Matches: 159, Mismatches: 23, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
42 16 0.10
43 143 0.90
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.24
Consensus pattern (43 bp):
CATGACCTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGAC
Found at i:32228057 original size:14 final size:16
Alignment explanation
Indices: 32228028--32228062 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
32228018 AGTATTTTGA
32228028 ATAATCTAATATATAT
1 ATAATCTAATATATAT
32228044 ATAATCTAATATATAT
1 ATAATCTAATATATAT
32228060 ATA
1 ATA
32228063 CATGTAGGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (16 bp):
ATAATCTAATATATAT
Found at i:32232791 original size:14 final size:14
Alignment explanation
Indices: 32232711--32232794 Score: 55
Period size: 14 Copynumber: 5.9 Consensus size: 14
32232701 TAAACCCTAA
32232711 CCCAACCCTTAAAT
1 CCCAACCCTTAAAT
*
32232725 CCTAAACCC-TAAAT
1 CC-CAACCCTTAAAT
** *
32232739 CCCTAACTATT-AAC
1 CCC-AACCCTTAAAT
* *
32232753 CCCTAACCCCTAACT
1 CCC-AACCCTTAAAT
* *
32232768 CCTAAACCTTAAAT
1 CCCAACCCTTAAAT
32232782 CCCAACCCTTAAA
1 CCCAACCCTTAAA
32232795 CCATAATCCC
Statistics
Matches: 50, Mismatches: 16, Indels: 8
0.68 0.22 0.11
Matches are distributed among these distances:
14 41 0.82
15 9 0.18
ACGTcount: A:0.37, C:0.40, G:0.00, T:0.23
Consensus pattern (14 bp):
CCCAACCCTTAAAT
Found at i:32233132 original size:15 final size:15
Alignment explanation
Indices: 32233093--32233142 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
32233083 TAGTTAATCT
*
32233093 AAACCCTAAACCCT-
1 AAACCTTAAACCCTA
32233107 AAACC-TAAACCCTA
1 AAACCTTAAACCCTA
32233121 AAACCTTAAACCC-A
1 AAACCTTAAACCCTA
32233135 TAAACCTT
1 -AAACCTT
32233143 TAACACATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
13 8 0.24
14 11 0.33
15 14 0.42
ACGTcount: A:0.46, C:0.36, G:0.00, T:0.18
Consensus pattern (15 bp):
AAACCTTAAACCCTA
Found at i:32233138 original size:8 final size:7
Alignment explanation
Indices: 32233091--32233238 Score: 68
Period size: 7 Copynumber: 20.7 Consensus size: 7
32233081 ACTAGTTAAT
32233091 CTAAACC
1 CTAAACC
32233098 CTAAACC
1 CTAAACC
32233105 CTAAA-C
1 CTAAACC
32233111 CTAAACC
1 CTAAACC
32233118 CTAAAACC
1 CT-AAACC
*
32233126 TTAAACC
1 CTAAACC
32233133 CATAAACC
1 C-TAAACC
* * *
32233141 TTTAACA
1 CTAAACC
32233148 C-ATAACC
1 CTA-AACC
*
32233155 TTTAAACC
1 -CTAAACC
*
32233163 TTAAACC
1 CTAAACC
* *
32233170 C-CAACTT
1 CTAAAC-C
*
32233177 TTAAACC
1 CTAAACC
*
32233184 ATAAACC
1 CTAAACC
*
32233191 ATAAACC
1 CTAAACC
*
32233198 ATAAACC
1 CTAAACC
* *
32233205 GTAACCC
1 CTAAACC
32233212 CTAAACC
1 CTAAACC
*
32233219 CATAATCC
1 C-TAAACC
*
32233227 ATAAACC
1 CTAAACC
*
32233234 TTAAA
1 CTAAA
32233239 ATGGTAACAT
Statistics
Matches: 108, Mismatches: 24, Indels: 18
0.72 0.16 0.12
Matches are distributed among these distances:
6 9 0.08
7 74 0.69
8 24 0.22
9 1 0.01
ACGTcount: A:0.45, C:0.33, G:0.01, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:32233151 original size:15 final size:15
Alignment explanation
Indices: 32233121--32233159 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
32233111 CTAAACCCTA
* *
32233121 AAACCTTAAACCCAT
1 AAACCTTTAACACAT
32233136 AAACCTTTAACACAT
1 AAACCTTTAACACAT
32233151 -AACCTTTAA
1 AAACCTTTAA
32233160 ACCTTAAACC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 9 0.41
15 13 0.59
ACGTcount: A:0.46, C:0.28, G:0.00, T:0.26
Consensus pattern (15 bp):
AAACCTTTAACACAT
Found at i:32233589 original size:41 final size:40
Alignment explanation
Indices: 32233527--32233758 Score: 356
Period size: 41 Copynumber: 5.6 Consensus size: 40
32233517 CCCAAAAAGC
*
32233527 TCCAAAAACGTGCCGCTAAAGCACTGAGCATTAGCGGCGCTT
1 TCCAAAAAC--GCCGCTAAAGCCCTGAGCATTAGCGGCGCTT
*
32233569 CTCCAAAAACGCCGCTAAAGCACTGAGCATTAGCGGCGCTT
1 -TCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTT
*
32233610 TCTCAAAAACGCCACTAAAGCCCTGAGCATTAGCGGCGCTT
1 TC-CAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTT
32233651 CTCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTT
1 -TCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTT
*
32233692 TACCAAAAACGCCGCTAAAGCCCTAAGCATTAGCGGCGCTT
1 T-CCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTT
*
32233733 TCTCAAAAACGCCGCTAAAACCCTGA
1 TC-CAAAAACGCCGCTAAAGCCCTGA
32233759 AAGCTCACAA
Statistics
Matches: 179, Mismatches: 6, Indels: 10
0.92 0.03 0.05
Matches are distributed among these distances:
40 4 0.02
41 164 0.92
42 2 0.01
43 9 0.05
ACGTcount: A:0.30, C:0.32, G:0.20, T:0.18
Consensus pattern (40 bp):
TCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTT
Found at i:32233878 original size:40 final size:40
Alignment explanation
Indices: 32233830--32233923 Score: 152
Period size: 40 Copynumber: 2.4 Consensus size: 40
32233820 AATGCTTGTT
* *
32233830 TTTAGCGGCGTTTTCCATAAATCGCCACTAATACTCGATC
1 TTTAGCGGCGTTTTCCAAAAAGCGCCACTAATACTCGATC
* *
32233870 TTTAGCGGCGTTTTCCAAAAAGCGCCGCTAATGCTCGATC
1 TTTAGCGGCGTTTTCCAAAAAGCGCCACTAATACTCGATC
32233910 TTTAGCGGCGTTTT
1 TTTAGCGGCGTTTT
32233924 TTATACAAAC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.33
Consensus pattern (40 bp):
TTTAGCGGCGTTTTCCAAAAAGCGCCACTAATACTCGATC
Found at i:32233947 original size:12 final size:12
Alignment explanation
Indices: 32233930--32233957 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
32233920 TTTTTTATAC
32233930 AAACGCCGCTAA
1 AAACGCCGCTAA
32233942 AAACGCCGCTAA
1 AAACGCCGCTAA
32233954 AAAC
1 AAAC
32233958 CTGTTTTGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.32, G:0.14, T:0.07
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:32243376 original size:16 final size:13
Alignment explanation
Indices: 32243346--32243371 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32243336 TAGTTTATCG
32243346 AAATTATTATAAT
1 AAATTATTATAAT
32243359 AAATTATTATAAT
1 AAATTATTATAAT
32243372 TATAATTTCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
AAATTATTATAAT
Found at i:32249060 original size:79 final size:79
Alignment explanation
Indices: 32248968--32249194 Score: 301
Period size: 79 Copynumber: 2.9 Consensus size: 79
32248958 ATGCACAGTT
* * *
32248968 ATAAATTAGAATCATTAACAATCAATCTAACATGTTCAGATATCGTATATTCCTCATCAACAAAG
1 ATAAATCAGAATCAGTAACAATCAATCTAACATATTCAGATATCGTATATTCCTCATCAACAAAG
32249033 TAACGTAGAAGATC
66 TAACGTAGAAGATC
* * * *
32249047 ATAAATCAGAATCAGTAACAATTAATCTAACATATTCAGATATTGTACATTCCTTATCAACAAAG
1 ATAAATCAGAATCAGTAACAATCAATCTAACATATTCAGATATCGTATATTCCTCATCAACAAAG
* *
32249112 TAACGTAGAGGATT
66 TAACGTAGAAGATC
* * * * ** * *
32249126 ATAAACCAAAAGCAGTAACAATCAATCTAACATAATCAGATATCACATATTCTTCATCAACAGAG
1 ATAAATCAGAATCAGTAACAATCAATCTAACATATTCAGATATCGTATATTCCTCATCAACAAAG
32249191 TAAC
66 TAAC
32249195 ACGGAGGCGT
Statistics
Matches: 127, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
79 127 1.00
ACGTcount: A:0.44, C:0.18, G:0.10, T:0.28
Consensus pattern (79 bp):
ATAAATCAGAATCAGTAACAATCAATCTAACATATTCAGATATCGTATATTCCTCATCAACAAAG
TAACGTAGAAGATC
Found at i:32250599 original size:28 final size:29
Alignment explanation
Indices: 32250555--32250626 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
32250545 TTGTGCTTGA
* * * *
32250555 GAGAAAATGAGAGAAG-AAAATATGTTTG
1 GAGAAAATGAGAAAAGAAAAAGAGGTTGG
32250583 GAGAAAATGAGAAAAGAAAAAGAGGTTGG
1 GAGAAAATGAGAAAAGAAAAAGAGGTTGG
32250612 GAGAAAATGAGAAAA
1 GAGAAAATGAGAAAA
32250627 CAACTCGTTG
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 15 0.38
29 24 0.62
ACGTcount: A:0.56, C:0.00, G:0.31, T:0.14
Consensus pattern (29 bp):
GAGAAAATGAGAAAAGAAAAAGAGGTTGG
Found at i:32251259 original size:14 final size:14
Alignment explanation
Indices: 32251240--32251280 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
32251230 TTGTTTCATT
* *
32251240 GAAAATAATTTTTG
1 GAAAATGATTTTTA
*
32251254 GAAAATGATTTCTA
1 GAAAATGATTTTTA
32251268 GAAAATGATTTTT
1 GAAAATGATTTTT
32251281 TTGGAAAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.41, C:0.02, G:0.15, T:0.41
Consensus pattern (14 bp):
GAAAATGATTTTTA
Found at i:32251891 original size:16 final size:16
Alignment explanation
Indices: 32251870--32251911 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
32251860 AGAAACACAG
32251870 ATAAAAGCAACAATTC
1 ATAAAAGCAACAATTC
32251886 ATAAAAGCAACAATTC
1 ATAAAAGCAACAATTC
*
32251902 ATAGAAGCAA
1 ATAAAAGCAA
32251912 ACCTCAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.57, C:0.17, G:0.10, T:0.17
Consensus pattern (16 bp):
ATAAAAGCAACAATTC
Found at i:32252721 original size:4 final size:4
Alignment explanation
Indices: 32252705--32252742 Score: 67
Period size: 4 Copynumber: 9.5 Consensus size: 4
32252695 GAAGAAATGA
*
32252705 TGAG TGGG TGAG TGAG TGAG TGAG TGAG TGAG TGAG TG
1 TGAG TGAG TGAG TGAG TGAG TGAG TGAG TGAG TGAG TG
32252743 CTGAAATGAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.21, C:0.00, G:0.53, T:0.26
Consensus pattern (4 bp):
TGAG
Found at i:32263936 original size:89 final size:88
Alignment explanation
Indices: 32263823--32263996 Score: 217
Period size: 89 Copynumber: 2.0 Consensus size: 88
32263813 CTTCTGCTTT
* * * * * * *
32263823 TTTTTTTTCACTCATTTCAGTACTTGAACTTTTAAAGTGCATCAAAAAGA-CCTTCAAACCTTTT
1 TTTTTTTGCACTCAATTCAGTACTTGAACTTTCAAAATACATAAAAAAGATCC-TCAAA-ATTTT
*
32263887 T-TAAAAAAGCAATTAAGTCCCTACA
64 TCAAAAAAAGCAATTAAG-CCCTACA
**
32263912 TTTTTTTGCACTCAATTGGGTACTTGAACTTTCAAAATACATAAAAAAGATCCTCAAAATTTTTC
1 TTTTTTTGCACTCAATTCAGTACTTGAACTTTCAAAATACATAAAAAAGATCCTCAAAATTTTTC
32263977 AAAAAAAGCAATTAAGCCCT
66 AAAAAAAGCAATTAAGCCCT
32263997 TGCTTTTATT
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
88 9 0.12
89 62 0.85
90 2 0.03
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.35
Consensus pattern (88 bp):
TTTTTTTGCACTCAATTCAGTACTTGAACTTTCAAAATACATAAAAAAGATCCTCAAAATTTTTC
AAAAAAAGCAATTAAGCCCTACA
Found at i:32264027 original size:22 final size:21
Alignment explanation
Indices: 32264001--32264044 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
32263991 AGCCCTTGCT
* *
32264001 TTTATTAAAAATTATAAAAAAA
1 TTTATAAAAAATTAAAAAA-AA
*
32264023 TTTATAAAAAATTAAAATAAA
1 TTTATAAAAAATTAAAAAAAA
32264044 T
1 T
32264045 AAAAGCTATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (21 bp):
TTTATAAAAAATTAAAAAAAA
Found at i:32264186 original size:21 final size:20
Alignment explanation
Indices: 32264157--32264229 Score: 53
Period size: 21 Copynumber: 3.6 Consensus size: 20
32264147 AAAAGTATAC
*
32264157 AATTTTACAAATTCGTAAGAA
1 AATTATACAAATTCGTAA-AA
*
32264178 AATTATACAAAAT-GTAAAGA
1 AATTATACAAATTCGTAAA-A
* *
32264198 AA-GATA-AATTTCGTAAAAA
1 AATTATACAAATTCGT-AAAA
*
32264217 AATTATAAAAATT
1 AATTATACAAATT
32264230 ATCATACCAA
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
18 3 0.08
19 9 0.22
20 13 0.32
21 15 0.38
ACGTcount: A:0.56, C:0.05, G:0.08, T:0.30
Consensus pattern (20 bp):
AATTATACAAATTCGTAAAA
Found at i:32264670 original size:19 final size:19
Alignment explanation
Indices: 32264625--32264671 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
32264615 TAGTAACAAG
32264625 TTATAAAATATATAGAAAT
1 TTATAAAATATATAGAAAT
* * *
32264644 ATAAAAAATTTATA-AAATT
1 TTATAAAATATATAGAAA-T
32264663 TTATAAAAT
1 TTATAAAAT
32264672 CGTAAGAAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (19 bp):
TTATAAAATATATAGAAAT
Found at i:32264671 original size:28 final size:27
Alignment explanation
Indices: 32264583--32264686 Score: 93
Period size: 28 Copynumber: 3.7 Consensus size: 27
32264573 TAAATCATAA
* *
32264583 AAAATATAAAAAATTGTAAACTTTTAT
1 AAAATATAAAAAATTATAAAATTTTAT
* * *
32264610 AAAAATAGTAACAAGTTATAAAA-TATAT
1 -AAAATA-TAAAAAATTATAAAATTTTAT
32264638 AGAAATATAAAAAATTTATAAAATTTTAT
1 A-AAATATAAAAAA-TTATAAAATTTTAT
*
32264667 AAAATCGTAAGAAAATTATA
1 AAAAT-ATAA-AAAATTATA
32264687 CAAAATGTAA
Statistics
Matches: 61, Mismatches: 9, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
27 6 0.10
28 27 0.44
29 24 0.39
30 4 0.07
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.33
Consensus pattern (27 bp):
AAAATATAAAAAATTATAAAATTTTAT
Found at i:32264681 original size:21 final size:21
Alignment explanation
Indices: 32264657--32264731 Score: 61
Period size: 21 Copynumber: 3.7 Consensus size: 21
32264647 AAAAATTTAT
* *
32264657 AAAATTTTATAAAATCGT-AAG
1 AAAATTATACAAAAT-GTAAAG
32264678 AAAATTATACAAAATGTAAAG
1 AAAATTATACAAAATGTAAAG
* *
32264699 -AAA-TATA-AATATCGTAAAA
1 AAAATTATACAAAAT-GTAAAG
32264718 AAAATTATA-AAAAT
1 AAAATTATACAAAAT
32264732 TATCGTACCA
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
18 4 0.09
19 9 0.20
20 8 0.18
21 24 0.53
ACGTcount: A:0.61, C:0.04, G:0.07, T:0.28
Consensus pattern (21 bp):
AAAATTATACAAAATGTAAAG
Found at i:32264686 original size:57 final size:57
Alignment explanation
Indices: 32264569--32264707 Score: 149
Period size: 56 Copynumber: 2.4 Consensus size: 57
32264559 AATTAGAATA
* * * * *
32264569 TATATAAATCATAAA-AAATATAAAAAATTGTAAACTTTTATAAAAATAGTAACAAGT
1 TATAAAAAT-ATAAAGAAATATAAAAAATTATAAAATTTTATAAAAATAGTAAAAAAT
* *
32264626 TAT-AAAATATATAGAAATATAAAAAATTTATAAAATTTTAT-AAAATCGTAAGAAAAT
1 TATAAAAATATAAAGAAATATAAAAAA-TTATAAAATTTTATAAAAATAGTAA-AAAAT
*
32264683 TATACAAAATGTAAAGAAATATAAA
1 TATA-AAAATATAAAGAAATATAAA
32264708 TATCGTAAAA
Statistics
Matches: 68, Mismatches: 9, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
55 4 0.06
56 25 0.37
57 21 0.31
59 18 0.26
ACGTcount: A:0.60, C:0.04, G:0.06, T:0.31
Consensus pattern (57 bp):
TATAAAAATATAAAGAAATATAAAAAATTATAAAATTTTATAAAAATAGTAAAAAAT
Found at i:32264871 original size:9 final size:9
Alignment explanation
Indices: 32264857--32264961 Score: 61
Period size: 9 Copynumber: 11.6 Consensus size: 9
32264847 GGTAGTTAAT
*
32264857 TTTTTATGA
1 TTTTTATAA
32264866 TTTTTATAAA
1 TTTTTAT-AA
* *
32264876 ATTTTACAA
1 TTTTTATAA
*
32264885 TTTTTATGA
1 TTTTTATAA
32264894 TTTTTATAAA
1 TTTTTAT-AA
*** *
32264904 AAATTCTAA
1 TTTTTATAA
*
32264913 TTTTTAAAA
1 TTTTTATAA
32264922 TTTTT-T-A
1 TTTTTATAA
*
32264929 TTTTTTTAA
1 TTTTTATAA
*
32264938 TTTTTTTAAA
1 TTTTTAT-AA
*
32264948 TTTTAATAA
1 TTTTTATAA
32264957 TTTTT
1 TTTTT
32264962 TCTAAATTTT
Statistics
Matches: 71, Mismatches: 20, Indels: 10
0.70 0.20 0.10
Matches are distributed among these distances:
7 6 0.08
8 1 0.01
9 47 0.66
10 17 0.24
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (9 bp):
TTTTTATAA
Found at i:32264914 original size:28 final size:28
Alignment explanation
Indices: 32264857--32264918 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
32264847 GGTAGTTAAT
**
32264857 TTTTTATGATTTTTATAAAATTTTACAA
1 TTTTTATGATTTTTATAAAAAATTACAA
32264885 TTTTTATGATTTTTATAAAAAATT-CTAA
1 TTTTTATGATTTTTATAAAAAATTAC-AA
32264913 TTTTTA
1 TTTTTA
32264919 AAATTTTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
27 1 0.03
28 30 0.97
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.58
Consensus pattern (28 bp):
TTTTTATGATTTTTATAAAAAATTACAA
Found at i:32264924 original size:28 final size:28
Alignment explanation
Indices: 32264865--32264926 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
32264855 ATTTTTTATG
** **
32264865 ATTTTTATAAAATTTTACAATTTTTATG
1 ATTTTTATAAAAAATTACAATTTTTAAA
32264893 ATTTTTATAAAAAATT-CTAATTTTTAAA
1 ATTTTTATAAAAAATTAC-AATTTTTAAA
32264921 ATTTTT
1 ATTTTT
32264927 TATTTTTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 1 0.03
28 28 0.97
ACGTcount: A:0.39, C:0.03, G:0.02, T:0.56
Consensus pattern (28 bp):
ATTTTTATAAAAAATTACAATTTTTAAA
Found at i:32264928 original size:10 final size:9
Alignment explanation
Indices: 32264911--32264973 Score: 56
Period size: 9 Copynumber: 6.9 Consensus size: 9
32264901 AAAAAATTCT
*
32264911 AATTTTTAA
1 AATTTTTTA
32264920 AATTTTTT-
1 AATTTTTTA
*
32264928 ATTTTTTTA
1 AATTTTTTA
*
32264937 ATTTTTTTA
1 AATTTTTTA
*
32264946 AATTTTAATA
1 AATTTT-TTA
*
32264956 ATTTTTTCTA
1 AATTTTT-TA
32264966 AATTTTTT
1 AATTTTTT
32264974 TTAGTTTTTT
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
8 7 0.16
9 22 0.50
10 15 0.34
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (9 bp):
AATTTTTTA
Found at i:32264931 original size:16 final size:17
Alignment explanation
Indices: 32264910--32264962 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
32264900 TAAAAAATTC
32264910 TAATTTTTAAAATTTTT
1 TAATTTTTAAAATTTTT
* * *
32264927 TATTTTTTTAATTTTTT
1 TAATTTTTAAAATTTTT
*
32264944 TAAATTTTAATAATTTTT
1 TAATTTTTAA-AATTTTT
32264962 T
1 T
32264963 CTAAATTTTT
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
17 21 0.75
18 7 0.25
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
TAATTTTTAAAATTTTT
Found at i:32264974 original size:12 final size:11
Alignment explanation
Indices: 32264929--32265006 Score: 58
Period size: 10 Copynumber: 7.3 Consensus size: 11
32264919 AAATTTTTTA
32264929 TTTTTTT-AA-
1 TTTTTTTAAAT
32264938 TTTTTTTAAA-
1 TTTTTTTAAAT
**
32264948 TTTTAAT-AAT
1 TTTTTTTAAAT
*
32264958 TTTTTCTAAAT
1 TTTTTTTAAAT
*
32264969 TTTTTTT-AGT
1 TTTTTTTAAAT
32264979 TTTTTTTATAAT
1 TTTTTTTA-AAT
32264991 TTTCTTTCTAAAT
1 TTT-TTT-TAAAT
32265004 TTT
1 TTT
32265007 AATAAGAAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
9 9 0.16
10 21 0.38
11 9 0.16
12 5 0.09
13 9 0.16
14 2 0.04
ACGTcount: A:0.24, C:0.04, G:0.01, T:0.71
Consensus pattern (11 bp):
TTTTTTTAAAT
Found at i:32265176 original size:89 final size:89
Alignment explanation
Indices: 32265024--32265192 Score: 214
Period size: 89 Copynumber: 1.9 Consensus size: 89
32265014 AAAGGGCTTT
* * * * **
32265024 AATTGCTTTTTTGAAAAATTTTGAGGGTCTTTTTAATGCATTTTGAAAGTTCGAGTACCCAATTG
1 AATTGCTTTTTTGAAAAAGTTTGAGGGCCATTTTAATGCATTTTGAAAATTAAAGTACCCAATTG
* *
32265089 AGTG-AAAACAAAAGTAGGGGCTC
66 AATGCAAAAAAAAAGTAGGGGCTC
* * * *
32265112 AATTGCTTTTTTTGAAGAAGTTTGAGGGCCATTTTGATGCATTTTGAAAATTAAAGTGCTCAATT
1 AATTGC-TTTTTTGAAAAAGTTTGAGGGCCATTTTAATGCATTTTGAAAATTAAAGTACCCAATT
32265177 GAATGCAAAAAAAAAG
65 GAATGCAAAAAAAAAG
32265193 GTCTTAAATT
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
88 6 0.09
89 52 0.78
90 9 0.13
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.35
Consensus pattern (89 bp):
AATTGCTTTTTTGAAAAAGTTTGAGGGCCATTTTAATGCATTTTGAAAATTAAAGTACCCAATTG
AATGCAAAAAAAAAGTAGGGGCTC
Found at i:32267860 original size:24 final size:25
Alignment explanation
Indices: 32267812--32267861 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
32267802 CCCTCTCAAA
* * *
32267812 CTTCCCGTTATAGTGTTCTTGTGAG
1 CTTCCCGTTATAATGCTCTTCTGAG
32267837 CTTCCCGTTA-AATGCTCTTCTGAG
1 CTTCCCGTTATAATGCTCTTCTGAG
32267861 C
1 C
32267862 ATCTTGACTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 12 0.55
25 10 0.45
ACGTcount: A:0.14, C:0.26, G:0.20, T:0.40
Consensus pattern (25 bp):
CTTCCCGTTATAATGCTCTTCTGAG
Found at i:32269298 original size:16 final size:16
Alignment explanation
Indices: 32269277--32269308 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
32269267 ATTGTTATTC
32269277 TTTGCTTTGTTTTCAA
1 TTTGCTTTGTTTTCAA
32269293 TTTGCTTTGTTTTCAA
1 TTTGCTTTGTTTTCAA
32269309 GCTTTATACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.12, G:0.12, T:0.62
Consensus pattern (16 bp):
TTTGCTTTGTTTTCAA
Found at i:32272689 original size:29 final size:29
Alignment explanation
Indices: 32272654--32272725 Score: 108
Period size: 29 Copynumber: 2.5 Consensus size: 29
32272644 TCATCGACCA
* *
32272654 ATGAAAAGGGGTAGATTCGGCTATCGATT
1 ATGAAAAGGGATAGATTCGGCTATCGAAT
*
32272683 ATGAAAAGGGATAGCTTCGGCTATCGAAT
1 ATGAAAAGGGATAGATTCGGCTATCGAAT
*
32272712 ATTAAAAGGGATAG
1 ATGAAAAGGGATAG
32272726 TGATGACCAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.36, C:0.10, G:0.29, T:0.25
Consensus pattern (29 bp):
ATGAAAAGGGATAGATTCGGCTATCGAAT
Found at i:32272751 original size:30 final size:29
Alignment explanation
Indices: 32272705--32272781 Score: 91
Period size: 30 Copynumber: 2.6 Consensus size: 29
32272695 AGCTTCGGCT
* *
32272705 ATCGAATATTAAAAGGGATAGTGATGACC
1 ATCGAATATGAAAAGGGATAGTGATAACC
* * **
32272734 ATCGATTAATGAAAAGGGATGGTTTTAACC
1 ATCGAAT-ATGAAAAGGGATAGTGATAACC
32272764 ATCGAATATGAAAAGGGA
1 ATCGAATATGAAAAGGGA
32272782 CGGTTACGAC
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
29 17 0.43
30 23 0.57
ACGTcount: A:0.42, C:0.09, G:0.25, T:0.25
Consensus pattern (29 bp):
ATCGAATATGAAAAGGGATAGTGATAACC
Found at i:32272793 original size:29 final size:29
Alignment explanation
Indices: 32272705--32272796 Score: 103
Period size: 29 Copynumber: 3.1 Consensus size: 29
32272695 AGCTTCGGCT
* * *
32272705 ATCGAATATTAAAAGGGATAGTGATGACC
1 ATCGAATATGAAAAGGGATGGTTATGACC
* * *
32272734 ATCGATTAATGAAAAGGGATGGTTTTAACC
1 ATCGAAT-ATGAAAAGGGATGGTTATGACC
* *
32272764 ATCGAATATGAAAAGGGACGGTTACGACC
1 ATCGAATATGAAAAGGGATGGTTATGACC
32272793 ATCG
1 ATCG
32272797 TTTAGCACAC
Statistics
Matches: 51, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
29 28 0.55
30 23 0.45
ACGTcount: A:0.38, C:0.13, G:0.25, T:0.24
Consensus pattern (29 bp):
ATCGAATATGAAAAGGGATGGTTATGACC
Found at i:32278395 original size:44 final size:44
Alignment explanation
Indices: 32278332--32278632 Score: 134
Period size: 44 Copynumber: 6.6 Consensus size: 44
32278322 TACAATGGCG
* *
32278332 AATCTCATCTACCTGAAGTTACAGTGGAGCAAGATGAAGCTACA
1 AATCTTATCTCCCTGAAGTTACAGTGGAGCAAGATGAAGCTACA
** * *
32278376 AATCTTATCTCCCTGAAGTTTTAGTGAAGCAAGATGAAGCTATA
1 AATCTTATCTCCCTGAAGTTACAGTGGAGCAAGATGAAGCTACA
* * * *
32278420 AATCCTGTA-C-CCCTGAAGTTGCAAT-GAGTC-GGAATGAAACTACAATAGCA
1 AAT-CT-TATCTCCCTGAAGTTACAGTGGAG-CAAG-ATG-AA--GC--TA-CA
* * *
32278470 AATCTTATCTCCCTGAAGTTGCAGTTGAGCAAGATAAAGCTACA
1 AATCTTATCTCCCTGAAGTTACAGTGGAGCAAGATGAAGCTACA
* * * * *
32278514 AGTCCTATAC-CCCT-ACAGTTACAATGGTTTG-GA-ATGAAGCTACAATAACA
1 AATCTTAT-CTCCCTGA-AGTTACAGTGG--AGCAAGATGAAG---C--T-ACA
* * * * *
32278564 AATTTTATCTCCCTGAAATTGCAGTGGAGAAAAATGAAGCTACA
1 AATCTTATCTCCCTGAAGTTACAGTGGAGCAAGATGAAGCTACA
*
32278608 AATCTTATAC-CCCTAAAGTTACAGT
1 AATCTTAT-CTCCCTGAAGTTACAGT
32278633 AGTTTGGAAT
Statistics
Matches: 191, Mismatches: 37, Indels: 58
0.67 0.13 0.20
Matches are distributed among these distances:
43 4 0.02
44 104 0.54
45 11 0.06
46 3 0.02
47 4 0.02
48 3 0.02
49 10 0.05
50 47 0.25
51 5 0.03
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.27
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTACAGTGGAGCAAGATGAAGCTACA
Found at i:32278472 original size:94 final size:95
Alignment explanation
Indices: 32278374--32278796 Score: 401
Period size: 94 Copynumber: 4.5 Consensus size: 95
32278364 GATGAAGCTA
** * *
32278374 CAAATCTTATCTCCCTGAAGTTTTAGTGAAGCAAGATGAAGCTATAAATCCTGTACCCCTGAAGT
1 CAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGT
* *
32278439 TGCAATGAG-TCGGAATGAAACTACAATAG
66 TACAATGAGTTTGGAATGAAACTACAATAG
* *
32278468 CAAATCTTATCTCCCTGAAGTTGCAGTTG-AGCAAGATAAAGCTACAAGTCCTATACCCCT-ACA
1 CAAATCTTATCTCCCTGAAGTTGCAG-TGAAGCAAGATGAAGCTACAAATCCTATACCCCTGA-A
* *
32278531 GTTACAATG-GTTTGGAATGAAGCTACAATAA
64 GTTACAATGAGTTTGGAATGAAACTACAATAG
* * * * * * *
32278562 CAAATTTTATCTCCCTGAAATTGCAGTGGAGAAAAATGAAGCTACAAATCTTATACCCCTAAAGT
1 CAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGT
* * *
32278627 TACAGT-AGTTTGGAATGAAGCTACAATGG
66 TACAATGAGTTTGGAATGAAACTACAATAG
*** * * * * * *
32278656 CGTGTATTATCTCTCTAAAGCTGCAGT-AGGGCAAGATGAAGCTACAAATCCTATATCCCTGAAG
1 CAAATCTTATCTCCCTGAAGTTGCAGTGA-AGCAAGATGAAGCTACAAATCCTATACCCCTGAAG
** ** * *
32278720 TTGTAATG-GAATAGATTGAAACTACAATAG
65 TTACAATGAGTTTGGAATGAAACTACAATAG
* * * * * *
32278750 CAAATCTAATCTCCCTAAAGATGTAGTGGAGCAAGATAAAGCTACAA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAAGATGAAGCTACAA
32278797 CCTCGAATCT
Statistics
Matches: 265, Mismatches: 55, Indels: 18
0.78 0.16 0.05
Matches are distributed among these distances:
93 4 0.02
94 258 0.97
95 3 0.01
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.26
Consensus pattern (95 bp):
CAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGT
TACAATGAGTTTGGAATGAAACTACAATAG
Found at i:32278780 original size:188 final size:188
Alignment explanation
Indices: 32278373--32278796 Score: 449
Period size: 188 Copynumber: 2.3 Consensus size: 188
32278363 AGATGAAGCT
* * * * * *
32278373 ACAAATCTTATCTCCCTGAAGTTTTAGTGAAGCAAGATGAAGCTATAAATCCTGTACCCCTGAAG
1 ACAAATCTTATCTCCCTAAAGTTGTAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTAAAG
* * * * *
32278438 TTGCAATGAGTCGGAATGAAACTACAATAGCAAATCTTATCTCCCTGAAGTTGCAGTTGAGCAAG
66 TTACAATGAGTCGGAATGAAACTACAATAGCAAATATTATCTCCCTAAAGCTGCAGTAGAGCAAG
* ** * *
32278503 ATAAAGCTACAAGTCCTATACCCCTACAGTTACAATGGTTTGGAATGAAGCTACAATA
131 ATAAAGCTACAAATCCTATACCCCTACAGTTACAATGGAATAGAATGAAACTACAATA
* * * * *
32278561 ACAAATTTTATCTCCCTGAAA-TTGCAGTGGAGAAAAATGAAGCTACAAATCTTATACCCCTAAA
1 ACAAATCTTATCTCCCT-AAAGTTGTAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTAAA
* * * * *** * *
32278625 GTTACAGT-AGTTTGGAATGAAGCTACAATGGCGTGTATTATCTCTCTAAAGCTGCAGTAGGGCA
65 GTTACAATGAG-TCGGAATGAAACTACAATAGCAAATATTATCTCCCTAAAGCTGCAGTAGAGCA
* * ** *
32278689 AGATGAAGCTACAAATCCTATATCCCTGA-AGTTGTAATGGAATAGATTGAAACTACAATA
129 AGATAAAGCTACAAATCCTATACCCCT-ACAGTTACAATGGAATAGAATGAAACTACAATA
* * * *
32278749 GCAAATCTAATCTCCCTAAAGATGTAGTGGAGCAAGATAAAGCTACAA
1 ACAAATCTTATCTCCCTAAAGTTGTAGTGGAGCAAGATGAAGCTACAA
32278797 CCTCGAATCT
Statistics
Matches: 189, Mismatches: 43, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
187 5 0.03
188 181 0.96
189 3 0.02
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (188 bp):
ACAAATCTTATCTCCCTAAAGTTGTAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTAAAG
TTACAATGAGTCGGAATGAAACTACAATAGCAAATATTATCTCCCTAAAGCTGCAGTAGAGCAAG
ATAAAGCTACAAATCCTATACCCCTACAGTTACAATGGAATAGAATGAAACTACAATA
Found at i:32280420 original size:21 final size:21
Alignment explanation
Indices: 32280390--32280451 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 21
32280380 GCTTGAAATT
*
32280390 AACCCTTATGGGTTTCTTTTC
1 AACCCTTATGGGTTTCTGTTC
* * * *
32280411 AGCTCTTATGAGTTTCCGTTC
1 AACCCTTATGGGTTTCTGTTC
32280432 AACCCTTATGGGTTTCTGTT
1 AACCCTTATGGGTTTCTGTT
32280452 TAGCACATGT
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.15, C:0.23, G:0.18, T:0.45
Consensus pattern (21 bp):
AACCCTTATGGGTTTCTGTTC
Found at i:32288704 original size:115 final size:114
Alignment explanation
Indices: 32288493--32289109 Score: 503
Period size: 115 Copynumber: 5.4 Consensus size: 114
32288483 ATGCATGGTT
* * * * **
32288493 AAGACCAAAACTCTGCGTTTTGGTTAAGATATTTTTCGGCGCTTGTCAAAAAGCGCCGCTAATAC
1 AAGACAAAAACTCTGCGTTTTGGTTAACATATTTTGCGGCGCTTTTTGAAAAGCGCCGCTAATAC
* * *
32288558 TATGCTTTAGCGGCGATTTCTCGT-GGACGCCACTAATTCCAGTATACATC
66 TATGCTTTAGCGGCG-TTTCCCATAAG-CGCCACTAATTCCAGTATACATC
** * * * * *
32288608 AAGACTTAAACGCTGCGTTTTTGTTAATATATTTTGCGGCGCTTTTTGAAAAGCACCGCTAATAG
1 AAGACAAAAACTCTGCGTTTTGGTTAACATATTTTGCGGCGCTTTTTGAAAAGCGCCGCTAATAC
* * * *
32288673 TATGCTTTAGCGGCGTTCTCCCATAAGCGCCACTAATTCTAATATACCTG
66 TATGCTTTAGCGGCGTT-TCCCATAAGCGCCACTAATTCCAGTATACATC
* * * **
32288723 ATGA-AAAAACTCTGCGTTTTGGTGAGCATATTTTGCGGCGCTTTTTGCCAAGCGCCGCTAATAC
1 AAGACAAAAACTCTGCGTTTTGGTTAACATATTTTGCGGCGCTTTTTGAAAAGCGCCGCTAATAC
* *** ** ** * *
32288787 TATGATTTAGCGGCGTTTTTTAATATTCGCCACTAATAACTGTAAACATC
66 TATGCTTTAGCGGCG-TTTCCCATAAGCGCCACTAATTCCAGTATACATC
* * *
32288837 AAGACAAAAACGT-TGCGTTTTGGTTACCAAATTTTGCGGCGCTTCTCTG-AAAGCGCCGCTAAT
1 AAGACAAAAAC-TCTGCGTTTTGGTTAACATATTTTGCGGCGCTT-TTTGAAAAGCGCCGCTAAT
* * ** * *
32288900 AGTATGCCTTAGCGGCGTGTTCCC-TTTGCGCCACTAATTCTAGTATACCTC
64 ACTATGCTTTAGCGGCGT-TTCCCATAAGCGCCACTAATTCCAGTATACATC
* * *** *
32288951 AAGAC-CAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGC-TTCACACAAAACGCCGCTAATA
1 AAGACAAAAACTCTGCGTTTTGGTTAACATATTTTGCGGCGCTTTTTGA-AAAGCGCCGCTAATA
* * * * * ** ** *
32289014 TTATGTTTTAGCGGCGTTTTCCCTTAAACGCCACTAACTGTAACATACACC
65 CTATGCTTTAGCGGCG-TTTCCCATAAGCGCCACTAATTCCAGTATACATC
* ** ** *
32289065 AAGACCAAAACGGTGCACTTTGGTTAAGATATTTTGCGGCG-TTTT
1 AAGACAAAAACTCTGCGTTTTGGTTAACATATTTTGCGGCGCTTTT
32289110 CCCATAAGCG
Statistics
Matches: 399, Mismatches: 89, Indels: 28
0.77 0.17 0.05
Matches are distributed among these distances:
111 2 0.01
112 2 0.01
113 62 0.16
114 136 0.34
115 192 0.48
116 5 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (114 bp):
AAGACAAAAACTCTGCGTTTTGGTTAACATATTTTGCGGCGCTTTTTGAAAAGCGCCGCTAATAC
TATGCTTTAGCGGCGTTTCCCATAAGCGCCACTAATTCCAGTATACATC
Found at i:32288900 original size:229 final size:228
Alignment explanation
Indices: 32288499--32289034 Score: 646
Period size: 229 Copynumber: 2.3 Consensus size: 228
32288489 GGTTAAGACC
* * * *
32288499 AAAACTCTGCGTTTTGGTTAAGATATTTTTCGGCGCTTGTCAAAAAGCGCCGCTAATACTATGCT
1 AAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAGCGCCGCTAATACTATGAT
* ** * ** * **
32288564 TTAGCGGCGATTTCTCGTGGACGCCACTAATTCCAGTATACATCAAGACTTAAACGCTGCGTTTT
66 TTAGCGGCGTTTTCTAATAGACGCCACTAATAACAGTAAACATCAAGACAAAAACGCTGCGTTTT
* * * * *
32288629 TGTTAATATATTTTGCGGCGCTTTTTGAAAAGCACCGCTAATAGTATGCTTTAGCGGCGT-TCTC
131 GGTTAACAAATTTTGCGGCGCTTTCTGAAAAGCACCGCTAATAGTATGCCTTAGCGGCGTGT-TC
* *
32288693 CCATAAGCGCCACTAATTCTAATATACCTGATGAA
195 CC-TAAGCGCCACTAATTCTAATATACCTCAAGAA
* * ** *
32288728 AAAACTCTGCGTTTTGG-TGAGCATATTTTGCGGCGCTTTTTGCCAAGCGCCGCTAATACTATGA
1 AAAACTCTGCGTTTTGGTTAAG-ATATTTTGCGGCGCTTCTCACAAAGCGCCGCTAATACTATGA
* ** * *
32288792 TTTAGCGGCGTTTTTTAATATTCGCCACTAATAACTGTAAACATCAAGACAAAAACGTTGCGTTT
65 TTTAGCGGCGTTTTCTAATAGACGCCACTAATAACAGTAAACATCAAGACAAAAACGCTGCGTTT
* *
32288857 TGGTTACCAAATTTTGCGGCGCTTCTCTG-AAAGCGCCGCTAATAGTATGCCTTAGCGGCGTGTT
130 TGGTTAACAAATTTTGCGGCGCTT-TCTGAAAAGCACCGCTAATAGTATGCCTTAGCGGCGTGTT
** * *
32288921 CCCTTTGCGCCACTAATTCTAGTATACCTCAAGAC
194 CCCTAAGCGCCACTAATTCTAATATACCTCAAGAA
* * * * *
32288956 CAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCACACAAAACGCCGCTAATATTATGTT
1 AAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAGCGCCGCTAATACTATGAT
32289021 TTAGCGGCGTTTTC
66 TTAGCGGCGTTTTC
32289035 CCTTAAACGC
Statistics
Matches: 257, Mismatches: 46, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
228 93 0.36
229 160 0.62
230 4 0.02
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (228 bp):
AAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAGCGCCGCTAATACTATGAT
TTAGCGGCGTTTTCTAATAGACGCCACTAATAACAGTAAACATCAAGACAAAAACGCTGCGTTTT
GGTTAACAAATTTTGCGGCGCTTTCTGAAAAGCACCGCTAATAGTATGCCTTAGCGGCGTGTTCC
CTAAGCGCCACTAATTCTAATATACCTCAAGAA
Found at i:32289121 original size:228 final size:227
Alignment explanation
Indices: 32288493--32289110 Score: 644
Period size: 229 Copynumber: 2.7 Consensus size: 227
32288483 ATGCATGGTT
* *
32288493 AAGACCAAAACTCTGCGTTTTGGTTAAGATATTTTTCGGCGCTTGTCA-AAAAGCGCCGCTAATA
1 AAGACC-AAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAA-CGCCGCTAATA
* * * ** * ** * **
32288557 CTATGCTTTAGCGGCGATTTCTCGTGGACGCCACTAATTCCAGTATACATCAAGACTTAAACGCT
64 CTATGATTTAGCGGCGTTTTC-CTTAAACGCCACTAACTGTA-AATACATCAAGACAAAAACGCT
* * * *
32288622 GCGTTTTTGTTAATATATTTTGCGGCGCTTTT-TGAAAAGCACCGCTAATAGTATGCTTTAGCGG
127 GCGTTTTGGTTAACATATTTTGCGGCGCTTTTCTG-AAAGCGCCGCTAATAGTATGCCTTAGCGG
*
32288686 CGTTCTCCCATAAGCGCCACTAATTCTAATATACCTG
191 CGTTCTCCCATAAGCGCCACTAATTCTAATATACCTC
* ** * * ** * *
32288723 ATGAAAAAACTCTGCGTTTTGG-TGAGCATATTTTGCGGCGCTTTTTGCCAAGCGCCGCTAATAC
1 AAGACCAAACTCTGCGTTTTGGTTAAG-ATATTTTGCGGCGCTTCTCACAAAACGCCGCTAATAC
32288787 TATGATTTAGCGGCGTTTT--TTAATATTCGCCACTAATAACTGT-AA-ACATCAAGACAAAAAC
65 TATGATTTAGCGGCGTTTTCCTTAA-A--CGCCAC---TAACTGTAAATACATCAAGACAAAAAC
* * * *
32288848 GTTGCGTTTTGGTTACCAAATTTTGCGGCGCTTCTCTGAAAGCGCCGCTAATAGTATGCCTTAGC
124 GCTGCGTTTTGGTTAACATATTTTGCGGCGCTTTTCTGAAAGCGCCGCTAATAGTATGCCTTAGC
** *
32288913 GGCGTGT-TCCC-TTTGCGCCACTAATTCTAGTATACCTC
189 GGCGT-TCTCCCATAAGCGCCACTAATTCTAATATACCTC
* *
32288951 AAGACCAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCACACAAAACGCCGCTAATATT
1 AAGACCAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAACGCCGCTAATACT
* * * *
32289016 ATGTTTTAGCGGCGTTTTCCCTTAAACGCCACTAACTGTAACATACACCAAGACCAAAACGGTGC
66 ATGATTTAGCGGCGTTTT-CCTTAAACGCCACTAACTGTAA-ATACATCAAGACAAAAACGCTGC
** *
32289081 ACTTTGGTTAAGATATTTTGCGGCG-TTTTC
129 GTTTTGGTTAACATATTTTGCGGCGCTTTTC
32289111 CCATAAGCGC
Statistics
Matches: 317, Mismatches: 54, Indels: 37
0.78 0.13 0.09
Matches are distributed among these distances:
225 7 0.02
226 2 0.01
227 6 0.02
228 137 0.43
229 147 0.46
230 10 0.03
231 4 0.01
232 4 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (227 bp):
AAGACCAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAACGCCGCTAATACT
ATGATTTAGCGGCGTTTTCCTTAAACGCCACTAACTGTAAATACATCAAGACAAAAACGCTGCGT
TTTGGTTAACATATTTTGCGGCGCTTTTCTGAAAGCGCCGCTAATAGTATGCCTTAGCGGCGTTC
TCCCATAAGCGCCACTAATTCTAATATACCTC
Found at i:32289750 original size:19 final size:19
Alignment explanation
Indices: 32289726--32289763 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
32289716 TCTCCCCCTC
*
32289726 ACTTTTATCATTTAAAGAT
1 ACTTTTACCATTTAAAGAT
32289745 ACTTTTACCATTTAAAGAT
1 ACTTTTACCATTTAAAGAT
32289764 TTACAAAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.37, C:0.13, G:0.05, T:0.45
Consensus pattern (19 bp):
ACTTTTACCATTTAAAGAT
Found at i:32292485 original size:38 final size:39
Alignment explanation
Indices: 32292443--32292520 Score: 131
Period size: 38 Copynumber: 2.0 Consensus size: 39
32292433 TGTTTTCACG
32292443 TTTCTCTCTTCTCACATTTTGACTTTTT-TTTCTTTCTT
1 TTTCTCTCTTCTCACATTTTGACTTTTTCTTTCTTTCTT
* *
32292481 TTTCTCTCTTCTTACGTTTTGACTTTTTCTTTCTTTCTT
1 TTTCTCTCTTCTCACATTTTGACTTTTTCTTTCTTTCTT
32292520 T
1 T
32292521 CCCCTCCTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
38 26 0.70
39 11 0.30
ACGTcount: A:0.06, C:0.23, G:0.04, T:0.67
Consensus pattern (39 bp):
TTTCTCTCTTCTCACATTTTGACTTTTTCTTTCTTTCTT
Found at i:32297698 original size:400 final size:401
Alignment explanation
Indices: 32296958--32297760 Score: 1518
Period size: 400 Copynumber: 2.0 Consensus size: 401
32296948 GTTGTACTTG
32296958 ATTGGAAACATCCTAAGAATATTTCTTAGATCCGCAGTTTTCTAGTCTGGTGAGTTATTATCGGA
1 ATTGGAAACATCCTAAGAATATTTCTTAGATCCGCAGTTTTCTAGTCTGGTGAGTTATTATCGGA
32297023 GGTTTGTTGAGGGGTTTTCATTAATTGGAACTCCTCTAACTAAGCTTTTACGCAAGAATGCTCAT
66 GGTTTGTTGAGGGGTTTTCATTAATTGGAACTCCTCTAACTAAGCTTTTACGCAAGAATGCTCAT
*
32297088 TTTGTCTAGACTGATGACCAACAATCGAGCTTTGAGAAGCTCAAGTCTATTCTGCCTCAAGCTCC
131 TTTGTCTAGACTGATGACCAACAATCGAGCTTTGAGAAGCTCAAGTCTATTCTGACTCAAGCTCC
32297153 TGTTTTGATACAACCTGAATCTGGTAAGGACTTCGTGGTTTATAGTGATGCGTCGCATGTCGGTT
196 TGTTTTGATACAACCTGAATCTGGTAAGGACTTCGTGGTTTATAGTGATGCGTCGCATGTCGGTT
32297218 TGGGATGTGTATTGATGCAAGATGGTAAGGTTGTGGCTTATGTGTCCCAGCAGCTTAAGTCACAC
261 TGGGATGTGTATTGATGCAAGATGGTAAGGTTGTGGCTTATGTGTCCCAGCAGCTTAAGTCACAC
* *
32297283 GAGGGGAATTATCCGACACATGATCTCGAGTTGGTTGTTGTAGTTTTTACCTTAAAA-TTTGGAG
326 GAGGGGAATTATCCGACACATGATCTCGAGTTGGCTGTCGTAGTTTTTACCTTAAAATTTTGGAG
32297347 GCACTATCTGT
391 GCACTATCTGT
*
32297358 ATTGGAAACATCCTAAGAATATTTCTTAGATCCGCAGTTTTCTAGTCTTGTGAGTTATTATCGGA
1 ATTGGAAACATCCTAAGAATATTTCTTAGATCCGCAGTTTTCTAGTCTGGTGAGTTATTATCGGA
*
32297423 GGTTTGTTGAGGGGTTTTCATTGATTGGAACTCCTCTAACTAAGCTTTTACGCAAGAATGCTCAT
66 GGTTTGTTGAGGGGTTTTCATTAATTGGAACTCCTCTAACTAAGCTTTTACGCAAGAATGCTCAT
* *
32297488 TTTGTCTAGACTGATGACCAATAATCGAGCTTTGAGAAGCTCAAGTCTATTCTGACTCAAGCTCT
131 TTTGTCTAGACTGATGACCAACAATCGAGCTTTGAGAAGCTCAAGTCTATTCTGACTCAAGCTCC
32297553 TGTTTTGATACAACCTGAATCTGGTAAGGACTTCGTGGTTTATAGTGATGCGTCGCATGTCGGTT
196 TGTTTTGATACAACCTGAATCTGGTAAGGACTTCGTGGTTTATAGTGATGCGTCGCATGTCGGTT
* *
32297618 TGGGATGTGTATTGATGCAAGATGGTAAGGTTGTGGCTTATGTGTCCCGGTAGCTTAAGTCACAC
261 TGGGATGTGTATTGATGCAAGATGGTAAGGTTGTGGCTTATGTGTCCCAGCAGCTTAAGTCACAC
32297683 GAGGGGAATTATCCGACACATGATCTCGAGTTGGCTGTCGTAGTTTTTACCTTAAAATTTTGGAG
326 GAGGGGAATTATCCGACACATGATCTCGAGTTGGCTGTCGTAGTTTTTACCTTAAAATTTTGGAG
32297748 GCACTATCTGT
391 GCACTATCTGT
32297759 AT
1 AT
32297761 GGTGAGAGGT
Statistics
Matches: 393, Mismatches: 9, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
400 373 0.95
401 20 0.05
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (401 bp):
ATTGGAAACATCCTAAGAATATTTCTTAGATCCGCAGTTTTCTAGTCTGGTGAGTTATTATCGGA
GGTTTGTTGAGGGGTTTTCATTAATTGGAACTCCTCTAACTAAGCTTTTACGCAAGAATGCTCAT
TTTGTCTAGACTGATGACCAACAATCGAGCTTTGAGAAGCTCAAGTCTATTCTGACTCAAGCTCC
TGTTTTGATACAACCTGAATCTGGTAAGGACTTCGTGGTTTATAGTGATGCGTCGCATGTCGGTT
TGGGATGTGTATTGATGCAAGATGGTAAGGTTGTGGCTTATGTGTCCCAGCAGCTTAAGTCACAC
GAGGGGAATTATCCGACACATGATCTCGAGTTGGCTGTCGTAGTTTTTACCTTAAAATTTTGGAG
GCACTATCTGT
Found at i:32307494 original size:132 final size:132
Alignment explanation
Indices: 32307271--32307671 Score: 694
Period size: 132 Copynumber: 3.0 Consensus size: 132
32307261 AGGATTTGTA
* ** * *
32307271 ATCTTCAACCTACTCCGCTGCTGCTTAGGGAGACAAGGCTCGGTGGCTTAAACCTACTTCCCACT
1 ATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTAGTGGCTTAAATCTGCTTCCCACT
* *
32307336 ATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATGAGATCTG
66 ATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
32307401 CT
131 CT
32307403 ATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTAGTGGCTTAAATCTGCTTCCCACT
1 ATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTAGTGGCTTAAATCTGCTTCCCACT
* * *
32307468 GTCTTGGAAAGATAAGATTTGTCGTCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTG
66 ATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
32307533 CT
131 CT
32307535 ATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTAGTGGCTTAAATCTGCTTCCCACT
1 ATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTAGTGGCTTAAATCTGCTTCCCACT
* *
32307600 ATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGGTAAGATCTG
66 ATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
32307665 CT
131 CT
32307667 ATCTT
1 ATCTT
32307672 TACTGATCTG
Statistics
Matches: 254, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 254 1.00
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (132 bp):
ATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTAGTGGCTTAAATCTGCTTCCCACT
ATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
CT
Found at i:32307671 original size:44 final size:44
Alignment explanation
Indices: 32307345--32307673 Score: 144
Period size: 44 Copynumber: 7.5 Consensus size: 44
32307335 TATCTTGAAA
* ** * *
32307345 AGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATCTGCTATCTTTAATCTACTCCACTACTGCTTAGGG
* * * * * *
32307389 AGATGAGATCTGCTATCTTCAACCTACTCCGCTGCTGCTCAGGG
1 AGATAAGATCTGCTATCTTTAATCTACTCCACTACTGCTTAGGG
* * * * *
32307433 AGACAAG-GCT--TAGTGGCTTAAATCTGCTTCC-C-ACTGTCTT-GGAA
1 AGATAAGATCTGCTA-T--CTTTAATCTAC-TCCACTACTG-CTTAGG-G
* * *
32307477 AGATAAGATTTG-TCGTCTTTGATCTACTCCACTACTGCTTAGGG
1 AGATAAGATCTGCT-ATCTTTAATCTACTCCACTACTGCTTAGGG
* * * * *
32307521 AGATAAGATCTGCTATCTTCAACCTACTCCGCTGCTGCTCAGGG
1 AGATAAGATCTGCTATCTTTAATCTACTCCACTACTGCTTAGGG
* * * * *
32307565 AGACAAG-GCT--TAGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATCTGCTA-T--CTTTAATCTAC-T-CCACTACTGCTTAGG-G
* * * *
32307609 AGATAAGATTTGCCATCTTTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATCTGCTATCTTTAATCTACTCCACTACTGCTTAGGG
*
32307653 AGGTAAGATCTGCTATCTTTA
1 AGATAAGATCTGCTATCTTTA
32307674 CTGATCTGTT
Statistics
Matches: 204, Mismatches: 56, Indels: 50
0.66 0.18 0.16
Matches are distributed among these distances:
41 4 0.02
42 8 0.04
43 16 0.08
44 152 0.75
45 16 0.08
46 7 0.03
47 1 0.00
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.32
Consensus pattern (44 bp):
AGATAAGATCTGCTATCTTTAATCTACTCCACTACTGCTTAGGG
Found at i:32312888 original size:16 final size:17
Alignment explanation
Indices: 32312846--32312896 Score: 63
Period size: 16 Copynumber: 3.1 Consensus size: 17
32312836 CAAACATGTC
32312846 CTTCTTCT-C-TCTTGT
1 CTTCTTCTACTTCTTGT
*
32312861 CTTTTCTCTACTTCTT-T
1 CTTCT-TCTACTTCTTGT
32312878 CTTCTTCTACTTCTTGT
1 CTTCTTCTACTTCTTGT
32312895 CT
1 CT
32312897 GGCTTGTATC
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
15 4 0.13
16 13 0.43
17 9 0.30
18 4 0.13
ACGTcount: A:0.04, C:0.31, G:0.04, T:0.61
Consensus pattern (17 bp):
CTTCTTCTACTTCTTGT
Found at i:32324328 original size:22 final size:22
Alignment explanation
Indices: 32324286--32324375 Score: 85
Period size: 23 Copynumber: 4.0 Consensus size: 22
32324276 GAAGATGAAA
***
32324286 CTGGAAATTGTTGCAATTTGTT
1 CTGGAAATTGTTTTGATTTGTT
* *
32324308 -TTGATATTGTTATTGATTTGTT
1 CTGGAAATTGTT-TTGATTTGTT
32324330 CTGGAAATTGTTTTGA-TTGTCT
1 CTGGAAATTGTTTTGATTTGT-T
32324352 GCTGGAAATTGTTCTTGATTTGTT
1 -CTGGAAATTGTT-TTGATTTGTT
32324376 AGTCAGTACA
Statistics
Matches: 55, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
21 13 0.24
22 12 0.22
23 21 0.38
24 5 0.09
25 4 0.07
ACGTcount: A:0.19, C:0.07, G:0.22, T:0.52
Consensus pattern (22 bp):
CTGGAAATTGTTTTGATTTGTT
Found at i:32325306 original size:23 final size:23
Alignment explanation
Indices: 32325280--32325332 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
32325270 CAAAATTAGT
* *
32325280 ATTAAAATAAATATAATATAAAA
1 ATTAAAATAAATACAACATAAAA
**
32325303 ATTAATTTAAATACAACATAAAA
1 ATTAAAATAAATACAACATAAAA
*
32325326 AATAAAA
1 ATTAAAA
32325333 CCAGTAAAGT
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.28
Consensus pattern (23 bp):
ATTAAAATAAATACAACATAAAA
Found at i:32332943 original size:18 final size:17
Alignment explanation
Indices: 32332915--32332949 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
32332905 NNNNTTAAGA
*
32332915 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
32332932 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
32332950 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:32335690 original size:90 final size:88
Alignment explanation
Indices: 32335454--32335769 Score: 302
Period size: 89 Copynumber: 3.5 Consensus size: 88
32335444 ATTTCTTTAG
* * *
32335454 AATGTTTGTATTTTTT-TATATTTGTAAATTTAATTTAGTCAGTATTATTTGTGGTTTCAATTTT
1 AATGTTTGTATTTTTTGGATA--TGTAAATTTAATTTAGTCAGTATTATTTGTTGTTTGAATTTT
* **
32335518 ATATTTTCGTGTAATAATTTCTTTA
64 ATATTTTCGTGTATTAATTTCTCCA
* * *
32335543 AATGTTTGTATTTTTTGTATATGTAAATTTAATTTAGTCCGTATTATTT-TTAATTTGAATTTTA
1 AATGTTTGTATTTTTTGGATATGTAAATTTAATTTAGTCAGTATTATTTGTT-GTTTGAATTTTA
* *
32335607 AATTTTTGTGTATTAATTTGAC-CCA
65 TATTTTCGTGTATTAATTT--CTCCA
** * * * *
32335632 TCTGTTTGTATTTTGTTGGGTCTGTAAATTTAATTTAGTCTGTATTGTTTGTTGTTTGAATTTTA
1 AATGTTTGTATTTT-TTGGATATGTAAATTTAATTTAGTCAGTATTATTTGTTGTTTGAATTTTA
*
32335697 TATTTTCGCGTATTAATATTCT--A
65 TATTTTCGTGTATTAAT-TTCTCCA
* * * *
32335720 GAATGTTTGTATTTTCTTGTATCTATAAATTTAATTT-GTTACGTATTATT
1 -AATGTTTGTATTTT-TTGGATATGTAAATTTAATTTAGTCA-GTATTATT
32335770 AATTTTTCGA
Statistics
Matches: 188, Mismatches: 29, Indels: 20
0.79 0.12 0.08
Matches are distributed among these distances:
87 1 0.01
88 56 0.30
89 67 0.36
90 60 0.32
91 4 0.02
ACGTcount: A:0.25, C:0.06, G:0.13, T:0.57
Consensus pattern (88 bp):
AATGTTTGTATTTTTTGGATATGTAAATTTAATTTAGTCAGTATTATTTGTTGTTTGAATTTTAT
ATTTTCGTGTATTAATTTCTCCA
Found at i:32335766 original size:89 final size:86
Alignment explanation
Indices: 32335454--32335769 Score: 316
Period size: 88 Copynumber: 3.6 Consensus size: 86
32335444 ATTTCTTTAG
* * * *
32335454 AATGTTTGTATTTTTTTATATTTGTAAATTTAATTTAGT-CAGTATTATTTGTGGTTTCAATTTT
1 AATGTTTGTA-TTTTTTGTATCTGTAAATTTAATTTAGTAC-GTATTATTTGTTGTTTGAATTTT
*
32335518 ATATTTTCGTGTAATAATTTCTTTA
64 ATATTTTCGTGTATTAATTTC--TA
* * *
32335543 AATGTTTGTATTTTTTGTATATGTAAATTTAATTTAGTCCGTATTATTT-TTAATTTGAATTTTA
1 AATGTTTGTATTTTTTGTATCTGTAAATTTAATTTAGTACGTATTATTTGTT-GTTTGAATTTTA
* * *
32335607 AATTTTTGTGTATTAATTTGACCCA
65 TATTTTCGTGTATTAATTT---CTA
** ** *
32335632 TCTGTTTGTATTTTGTTGGGTCTGTAAATTTAATTTAGT-CTGTATTGTTTGTTGTTTGAATTTT
1 AATGTTTGTATTTT-TTGTATCTGTAAATTTAATTTAGTAC-GTATTATTTGTTGTTTGAATTTT
*
32335696 ATATTTTCGCGTATTAATATTCTA
64 ATATTTTCGTGTATTAAT-TTCTA
*
32335720 GAATGTTTGTATTTTCTTGTATCTATAAATTTAATTT-GTTACGTATTATT
1 -AATGTTTGTATTTT-TTGTATCTGTAAATTTAATTTAG-TACGTATTATT
32335770 AATTTTTCGA
Statistics
Matches: 188, Mismatches: 27, Indels: 24
0.79 0.11 0.10
Matches are distributed among these distances:
87 1 0.01
88 64 0.34
89 63 0.34
90 55 0.29
91 5 0.03
ACGTcount: A:0.25, C:0.06, G:0.13, T:0.57
Consensus pattern (86 bp):
AATGTTTGTATTTTTTGTATCTGTAAATTTAATTTAGTACGTATTATTTGTTGTTTGAATTTTAT
ATTTTCGTGTATTAATTTCTA
Found at i:32338003 original size:23 final size:23
Alignment explanation
Indices: 32337977--32338039 Score: 85
Period size: 23 Copynumber: 2.7 Consensus size: 23
32337967 AGGATCTATG
*
32337977 AAATAAAAGTTGAAATGAAAATA-
1 AAATAAAA-TTGAAATGAAAAAAT
32338000 AAATATAAATTGAAATGAAAAAAT
1 AAATA-AAATTGAAATGAAAAAAT
32338024 AAAT-AAATTGAAATGA
1 AAATAAAATTGAAATGA
32338040 GACAAAAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
22 12 0.32
23 18 0.49
24 7 0.19
ACGTcount: A:0.65, C:0.00, G:0.11, T:0.24
Consensus pattern (23 bp):
AAATAAAATTGAAATGAAAAAAT
Found at i:32338013 original size:18 final size:18
Alignment explanation
Indices: 32337995--32338173 Score: 57
Period size: 22 Copynumber: 9.1 Consensus size: 18
32337985 GTTGAAATGA
*
32337995 AAAT-AAAATATAAATTG
1 AAATGAAAAAATAAATTG
32338012 AAATGAAAAAATAAATAAATTG
1 AAATG---AAA-AAATAAATTG
*
32338034 AAATGAGACAAAAAAAATT-
1 AAATGA-A-AAAATAAATTG
32338053 AATATG--AAAA-AAATTG
1 AA-ATGAAAAAATAAATTG
*
32338069 AAATGAGAAAAAAATAAATTT
1 AAAT--G-AAAAAATAAATTG
32338090 AAATGGAAAAAATTTTAAA-TG
1 AAAT-GAAAAAA---TAAATTG
* *
32338111 AAATGAAAATTAAAATGAAGTG
1 AAATG--AA--AAAATAAATTG
32338133 AAATGAAAATTAAATTAAATTTG
1 AAATG-AAA--AAA-TAAA-TTG
32338156 AAATGAAAAAA-AAATTG
1 AAATGAAAAAATAAATTG
32338173 A
1 A
32338174 CAAGACATAT
Statistics
Matches: 127, Mismatches: 8, Indels: 54
0.67 0.04 0.29
Matches are distributed among these distances:
15 7 0.06
16 6 0.05
17 9 0.07
18 3 0.02
19 10 0.08
20 21 0.17
21 27 0.21
22 33 0.26
23 7 0.06
24 4 0.03
ACGTcount: A:0.64, C:0.01, G:0.11, T:0.25
Consensus pattern (18 bp):
AAATGAAAAAATAAATTG
Found at i:32338064 original size:15 final size:15
Alignment explanation
Indices: 32338044--32338081 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
32338034 AAATGAGACA
32338044 AAAAAAATT-AATATG
1 AAAAAAATTGAA-ATG
32338059 AAAAAAATTGAAATG
1 AAAAAAATTGAAATG
32338074 AGAAAAAA
1 A-AAAAAA
32338082 ATAAATTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.71, C:0.00, G:0.11, T:0.18
Consensus pattern (15 bp):
AAAAAAATTGAAATG
Found at i:32338074 original size:35 final size:36
Alignment explanation
Indices: 32338020--32338103 Score: 111
Period size: 35 Copynumber: 2.4 Consensus size: 36
32338010 TGAAATGAAA
* *
32338020 AAAT-AAATAAATTGAAATGAGACAAAAA-AAA-TT
1 AAATGAAAAAAATTGAAATGAGAAAAAAATAAATTT
32338053 AATATGAAAAAAATTGAAATGAGAAAAAAATAAATTT
1 AA-ATGAAAAAAATTGAAATGAGAAAAAAATAAATTT
*
32338090 AAATGGAAAAAATT
1 AAATGAAAAAAATT
32338104 TTAAATGAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
33 2 0.05
34 2 0.05
35 22 0.50
36 14 0.32
37 4 0.09
ACGTcount: A:0.65, C:0.01, G:0.11, T:0.23
Consensus pattern (36 bp):
AAATGAAAAAAATTGAAATGAGAAAAAAATAAATTT
Found at i:32338078 original size:17 final size:17
Alignment explanation
Indices: 32338028--32338083 Score: 55
Period size: 17 Copynumber: 3.2 Consensus size: 17
32338018 AAAAATAAAT
32338028 AAATTGAAATGAGACAAAAA
1 AAATTGAAATGAG---AAAA
32338048 AAATT--AAT-ATGAAAA
1 AAATTGAAATGA-GAAAA
32338063 AAATTGAAATGAGAAAA
1 AAATTGAAATGAGAAAA
32338080 AAAT
1 AAAT
32338084 AAATTTAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
15 9 0.28
17 13 0.41
18 5 0.16
20 5 0.16
ACGTcount: A:0.66, C:0.02, G:0.12, T:0.20
Consensus pattern (17 bp):
AAATTGAAATGAGAAAA
Found at i:32338128 original size:17 final size:17
Alignment explanation
Indices: 32338106--32338163 Score: 55
Period size: 17 Copynumber: 3.5 Consensus size: 17
32338096 AAAAAATTTT
32338106 AAATGAAATGAAAATTA
1 AAATGAAATGAAAATTA
* *
32338123 AAATGAAGTG-AAATGA
1 AAATGAAATGAAAATTA
* * * *
32338139 AAATTAAATTAAATTTG
1 AAATGAAATGAAAATTA
32338156 AAATGAAA
1 AAATGAAA
32338164 AAAAAATTGA
Statistics
Matches: 31, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
16 12 0.39
17 19 0.61
ACGTcount: A:0.60, C:0.00, G:0.14, T:0.26
Consensus pattern (17 bp):
AAATGAAATGAAAATTA
Found at i:32338135 original size:22 final size:23
Alignment explanation
Indices: 32338109--32338164 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 23
32338099 AAATTTTAAA
*
32338109 TGAAATGAAAATTAAAATGAA-G
1 TGAAATGAAAATTAAAATAAATG
* *
32338131 TGAAATGAAAATTAAATTAAATT
1 TGAAATGAAAATTAAAATAAATG
32338154 TGAAATGAAAA
1 TGAAATGAAAA
32338165 AAAAATTGAC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 19 0.63
23 11 0.37
ACGTcount: A:0.59, C:0.00, G:0.14, T:0.27
Consensus pattern (23 bp):
TGAAATGAAAATTAAAATAAATG
Found at i:32338722 original size:5 final size:5
Alignment explanation
Indices: 32338714--32338764 Score: 66
Period size: 5 Copynumber: 9.6 Consensus size: 5
32338704 TCATTTTTTT
*
32338714 TTTCA TTTCA TTTCA TTTCA TTTTCA TTTCACA TTTCA TTTCA TTTAA
1 TTTCA TTTCA TTTCA TTTCA -TTTCA TTT--CA TTTCA TTTCA TTTCA
32338762 TTT
1 TTT
32338765 TTTTTCCATT
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
5 32 0.76
6 5 0.12
7 5 0.12
ACGTcount: A:0.22, C:0.18, G:0.00, T:0.61
Consensus pattern (5 bp):
TTTCA
Found at i:32338726 original size:17 final size:17
Alignment explanation
Indices: 32338704--32338987 Score: 97
Period size: 17 Copynumber: 15.4 Consensus size: 17
32338694 ATATGTCTTA
32338704 TCATTTTTTTTTTCATT
1 TCATTTTTTTTTTCATT
32338721 TCATTTCATTTCATTTTCATT
1 TCATTT--TTT--TTTTCATT
** **
32338742 TCACATTTCATTTCATT
1 TCATTTTTTTTTTCATT
* *
32338759 T-AATTTTTTTTCCATT
1 TCATTTTTTTTTTCATT
* *
32338775 TAAAATTTTTTTATT-ATT
1 T--CATTTTTTTTTTCATT
* *
32338793 TCAATTTATTTTTCATAT
1 TCATTTTTTTTTTCAT-T
* * *
32338811 TAATTTTTTGTCTCATT
1 TCATTTTTTTTTTCATT
*
32338828 TCAATTTTTTTTTCATT
1 TCATTTTTTTTTTCATT
* **
32338845 TCA-TATTCATTTCAACTT
1 TCATTTTTTTTTTC-A-TT
*
32338863 TCATTTCGTTTTAGATTCATT
1 TCATTT--TTTT--TTTCATT
**
32338884 TCAAATTACATTTCATTTCATT
1 TC--ATT---TTTTTTTTCATT
* *
32338906 TCAATTTATTTTTCATT
1 TCATTTTTTTTTTCATT
32338923 TCAATTTATTCTTTTTTCATAT
1 TC-A-TT-TT-TTTTTTCAT-T
32338945 TCAGTTTTTTTTTTCATT
1 TCA-TTTTTTTTTTCATT
* * *
32338963 TCAATTTATATTTTAATT
1 TC-ATTTTTTTTTTCATT
32338981 TCATTTT
1 TCATTTT
32338988 ATTTCAAAAT
Statistics
Matches: 194, Mismatches: 46, Indels: 54
0.66 0.16 0.18
Matches are distributed among these distances:
16 26 0.13
17 49 0.25
18 38 0.20
19 25 0.13
20 6 0.03
21 29 0.15
22 12 0.06
23 6 0.03
24 2 0.01
26 1 0.01
ACGTcount: A:0.23, C:0.13, G:0.01, T:0.63
Consensus pattern (17 bp):
TCATTTTTTTTTTCATT
Found at i:32338748 original size:23 final size:21
Alignment explanation
Indices: 32338713--32338759 Score: 76
Period size: 23 Copynumber: 2.1 Consensus size: 21
32338703 ATCATTTTTT
32338713 TTTTCATTTCATTTCATTTCA
1 TTTTCATTTCATTTCATTTCA
32338734 TTTTCATTTCACATTTCATTTCA
1 TTTTCATTT--CATTTCATTTCA
32338757 TTT
1 TTT
32338760 AATTTTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 9 0.38
23 15 0.62
ACGTcount: A:0.19, C:0.19, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTTCATTTCATTTCATTTCA
Found at i:32338818 original size:52 final size:52
Alignment explanation
Indices: 32338734--32338856 Score: 139
Period size: 52 Copynumber: 2.4 Consensus size: 52
32338724 TTTCATTTCA
* *
32338734 TTTTCATTTCACATTTCA--TTTCATTTAATTTTTTTTC-CATTTAAAATTTTT
1 TTTTCATTTCATA-TTCATTTTTCATTTAATTTTTTGTCTCATTT-AAATTTTT
* *
32338785 TTATT-ATTTCA-ATTTATTTTTCATATTAATTTTTTGTCTCATTTCAATTTTT
1 TT-TTCATTTCATATTCATTTTTCAT-TTAATTTTTTGTCTCATTTAAATTTTT
32338837 TTTTCATTTCATATTCATTT
1 TTTTCATTTCATATTCATTT
32338857 CAACTTTCAT
Statistics
Matches: 61, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
49 3 0.05
50 1 0.02
51 16 0.26
52 29 0.48
53 12 0.20
ACGTcount: A:0.23, C:0.12, G:0.01, T:0.64
Consensus pattern (52 bp):
TTTTCATTTCATATTCATTTTTCATTTAATTTTTTGTCTCATTTAAATTTTT
Found at i:32338819 original size:35 final size:34
Alignment explanation
Indices: 32338754--32338845 Score: 98
Period size: 35 Copynumber: 2.6 Consensus size: 34
32338744 ACATTTCATT
*
32338754 TCATTT-AATTTTTTTTCCATTTAAAATTTTTTTA
1 TCATTTCAATTTTTTTT-CATTTAAAATTTTTGTA
* * *
32338788 TTATTTCAATTTATTTTTCATATT-AATTTTTTGTC
1 TCATTTCAATTT-TTTTTCAT-TTAAAATTTTTGTA
32338823 TCATTTCAATTTTTTTTTCATTT
1 TCATTTCAA-TTTTTTTTCATTT
32338846 CATATTCATT
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
34 7 0.14
35 32 0.65
36 10 0.20
ACGTcount: A:0.23, C:0.10, G:0.01, T:0.66
Consensus pattern (34 bp):
TCATTTCAATTTTTTTTCATTTAAAATTTTTGTA
Found at i:32338853 original size:11 final size:11
Alignment explanation
Indices: 32338839--32338908 Score: 53
Period size: 11 Copynumber: 6.8 Consensus size: 11
32338829 CAATTTTTTT
32338839 TTCATTTCATA
1 TTCATTTCATA
32338850 TTCATTTCA-A
1 TTCATTTCATA
32338860 --C-TTTCAT-
1 TTCATTTCATA
* * *
32338867 TTCGTTTTAGA
1 TTCATTTCATA
*
32338878 TTCATTTCAAA
1 TTCATTTCATA
32338889 TTACATTTCAT-
1 TT-CATTTCATA
32338900 TTCATTTCA
1 TTCATTTCA
32338909 ATTTATTTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 13
0.71 0.09 0.20
Matches are distributed among these distances:
7 5 0.11
8 1 0.02
9 1 0.02
10 12 0.26
11 21 0.45
12 7 0.15
ACGTcount: A:0.26, C:0.19, G:0.03, T:0.53
Consensus pattern (11 bp):
TTCATTTCATA
Found at i:32338857 original size:28 final size:28
Alignment explanation
Indices: 32338823--32338925 Score: 86
Period size: 28 Copynumber: 3.7 Consensus size: 28
32338813 ATTTTTTGTC
*
32338823 TCATTTCAATTTTTTTTTCATTTCATAT
1 TCATTTCAATTTTTATTTCATTTCATAT
* * * * *
32338851 TCATTTCAACTTTCATTTCGTTTTAGAT
1 TCATTTCAATTTTTATTTCATTTCATAT
* **
32338879 TCATTTCAAATTACATTTCATTTCAT-T
1 TCATTTCAATTTTTATTTCATTTCATAT
32338906 TCAATTT--ATTTTTCATTTCA
1 TC-ATTTCAATTTTT-ATTTCA
32338926 ATTTATTCTT
Statistics
Matches: 59, Mismatches: 14, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
26 3 0.05
27 9 0.15
28 47 0.80
ACGTcount: A:0.24, C:0.17, G:0.02, T:0.57
Consensus pattern (28 bp):
TCATTTCAATTTTTATTTCATTTCATAT
Found at i:32338904 original size:22 final size:22
Alignment explanation
Indices: 32338878--32338925 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
32338868 TCGTTTTAGA
32338878 TTCATTTCAAATTACATTTCAT
1 TTCATTTCAAATTACATTTCAT
* **
32338900 TTCATTTCAATTTATTTTTCAT
1 TTCATTTCAAATTACATTTCAT
32338922 TTCA
1 TTCA
32338926 ATTTATTCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.00, T:0.56
Consensus pattern (22 bp):
TTCATTTCAAATTACATTTCAT
Found at i:32338925 original size:5 final size:5
Alignment explanation
Indices: 32338838--32338908 Score: 52
Period size: 5 Copynumber: 13.0 Consensus size: 5
32338828 TCAATTTTTT
* * *
32338838 TTTCA TTTCA TATTCA TTTCAA CTTTCA TTTCG TTTTA GATTCA TTTCAAA
1 TTTCA TTTCA T-TTCA TTTC-A -TTTCA TTTCA TTTCA -TTTCA TTTC--A
*
32338889 TTACA TTTCA TTTCA TTTCA
1 TTTCA TTTCA TTTCA TTTCA
32338909 ATTTATTTTT
Statistics
Matches: 52, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
5 34 0.65
6 10 0.19
7 8 0.15
ACGTcount: A:0.25, C:0.18, G:0.03, T:0.54
Consensus pattern (5 bp):
TTTCA
Found at i:32338988 original size:18 final size:18
Alignment explanation
Indices: 32338903--32338989 Score: 59
Period size: 18 Copynumber: 4.7 Consensus size: 18
32338893 ATTTCATTTC
*
32338903 ATTTCAATTTAT-TTTTC
1 ATTTCAATTTATATTTTA
* *
32338920 ATTTCAATTTATTCTTTTTTC
1 ATTTCAATTTA---TATTTTA
* * * *
32338941 ATATTCAGTTTTTTTTTTC
1 AT-TTCAATTTATATTTTA
32338960 ATTTCAATTTATATTTTA
1 ATTTCAATTTATATTTTA
*
32338978 ATTTCATTTTAT
1 ATTTCAATTTAT
32338990 TTCAAAATTT
Statistics
Matches: 58, Mismatches: 7, Indels: 9
0.78 0.09 0.12
Matches are distributed among these distances:
17 11 0.19
18 23 0.40
19 9 0.16
20 1 0.02
21 7 0.12
22 7 0.12
ACGTcount: A:0.23, C:0.10, G:0.01, T:0.66
Consensus pattern (18 bp):
ATTTCAATTTATATTTTA
Found at i:32338999 original size:24 final size:25
Alignment explanation
Indices: 32338972--32339025 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
32338962 TTCAATTTAT
* *
32338972 ATTTT-AATTTCATTTTATTTCAAA
1 ATTTTAAATTTCATTTAAATTCAAA
32338996 ATTTTAAATTTCATTTAAATTCAAA
1 ATTTTAAATTTCATTTAAATTCAAA
*
32339021 TTTTT
1 ATTTT
32339026 TCTCATTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 5 0.19
25 21 0.81
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.57
Consensus pattern (25 bp):
ATTTTAAATTTCATTTAAATTCAAA
Found at i:32339296 original size:27 final size:27
Alignment explanation
Indices: 32339239--32339296 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
32339229 ATTTCAAATT
* **
32339239 TCATTTCATTTAAATTTATTTTTTTTC
1 TCATTTCATTTAAATTTATTGTACTTC
*
32339266 TCATTTCATTT-AATTTATGTGTACTTG
1 TCATTTCATTTAAATTTAT-TGTACTTC
32339293 TCAT
1 TCAT
32339297 ACAACCAAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 7 0.27
27 19 0.73
ACGTcount: A:0.22, C:0.12, G:0.05, T:0.60
Consensus pattern (27 bp):
TCATTTCATTTAAATTTATTGTACTTC
Found at i:32340639 original size:12 final size:11
Alignment explanation
Indices: 32340614--32340638 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
32340604 TTGAATCTCA
32340614 TTTCTTAGTTT
1 TTTCTTAGTTT
32340625 TTTCTTAGTTT
1 TTTCTTAGTTT
32340636 TTT
1 TTT
32340639 TTTCGACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.08, G:0.08, T:0.76
Consensus pattern (11 bp):
TTTCTTAGTTT
Found at i:32340812 original size:12 final size:12
Alignment explanation
Indices: 32340795--32340820 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
32340785 TTCAATTAAT
32340795 AAAGCAAACAAA
1 AAAGCAAACAAA
32340807 AAAGCAAACAAA
1 AAAGCAAACAAA
32340819 AA
1 AA
32340821 CTCAGTTGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.15, G:0.08, T:0.00
Consensus pattern (12 bp):
AAAGCAAACAAA
Found at i:32345562 original size:15 final size:15
Alignment explanation
Indices: 32345539--32345576 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
32345529 TATATACTAA
*
32345539 AAAAG-TAAGTGTTG
1 AAAAGTTAAGTATTG
32345553 AAAAGTTAAGTATTG
1 AAAAGTTAAGTATTG
*
32345568 AAAATTTAA
1 AAAAGTTAA
32345577 ATACGAAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 5 0.24
15 16 0.76
ACGTcount: A:0.50, C:0.00, G:0.18, T:0.32
Consensus pattern (15 bp):
AAAAGTTAAGTATTG
Found at i:32346121 original size:31 final size:31
Alignment explanation
Indices: 32346070--32346167 Score: 106
Period size: 31 Copynumber: 3.2 Consensus size: 31
32346060 TTACATTATT
* ** *
32346070 AGTCACTAAATTATGGGAAAGTTTTCATTTT
1 AGTCACTAAACTATTCGAAAGTTTTCATTTA
* * * *
32346101 GGTCACTGAACTATTTGAAAGTTTCCATTTA
1 AGTCACTAAACTATTCGAAAGTTTTCATTTA
* *
32346132 AGTCACTAAACTATTCAAAAGTTTTTATTTA
1 AGTCACTAAACTATTCGAAAGTTTTCATTTA
32346163 AGTCA
1 AGTCA
32346168 TTAGGTTAAG
Statistics
Matches: 54, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
31 54 1.00
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.40
Consensus pattern (31 bp):
AGTCACTAAACTATTCGAAAGTTTTCATTTA
Found at i:32350855 original size:1 final size:1
Alignment explanation
Indices: 32350851--32350885 Score: 70
Period size: 1 Copynumber: 35.0 Consensus size: 1
32350841 TTTTTTTTTT
32350851 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
32350886 GAGAGAGAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:32353696 original size:12 final size:12
Alignment explanation
Indices: 32353663--32353700 Score: 62
Period size: 11 Copynumber: 3.3 Consensus size: 12
32353653 AATAAATATA
32353663 TTTAT-TAAAAT
1 TTTATATAAAAT
32353674 TTTATAT-AAAT
1 TTTATATAAAAT
32353685 TTTATATAAAAT
1 TTTATATAAAAT
32353697 TTTA
1 TTTA
32353701 ATTGAAATGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 16 0.64
12 9 0.36
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
TTTATATAAAAT
Found at i:32358868 original size:2 final size:2
Alignment explanation
Indices: 32358861--32358890 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
32358851 TTCATATGAC
32358861 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32358891 TCATATCTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32363703 original size:27 final size:27
Alignment explanation
Indices: 32363673--32363744 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 27
32363663 AAGTCATTAT
*
32363673 TACAGAATATGTCACAAAGGCCATATA
1 TACAGAATATGCCACAAAGGCCATATA
* **
32363700 TACA-AAGTATGCCACAACGGTTATATA
1 TACAGAA-TATGCCACAAAGGCCATATA
*
32363727 TACAGAGTATGCCACAAA
1 TACAGAATATGCCACAAA
32363745 AGCGGTTCAT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
26 2 0.05
27 34 0.92
28 1 0.03
ACGTcount: A:0.43, C:0.19, G:0.15, T:0.22
Consensus pattern (27 bp):
TACAGAATATGCCACAAAGGCCATATA
Found at i:32363813 original size:20 final size:20
Alignment explanation
Indices: 32363782--32363831 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
32363772 TCAGAGTACA
* *
32363782 CCACAAAGGCTGACAGGATG
1 CCACATAGGCTGACAAGATG
* *
32363802 TCATATAGGCTGACAAGATG
1 CCACATAGGCTGACAAGATG
32363822 CCACATAGGC
1 CCACATAGGC
32363832 ATCCCTAAAA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.34, C:0.24, G:0.26, T:0.16
Consensus pattern (20 bp):
CCACATAGGCTGACAAGATG
Found at i:32366964 original size:7 final size:7
Alignment explanation
Indices: 32366952--32366976 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
32366942 TCCTCCTTTC
32366952 ACCCTAA
1 ACCCTAA
32366959 ACCCTAA
1 ACCCTAA
32366966 ACCCTAA
1 ACCCTAA
32366973 ACCC
1 ACCC
32366977 CTACCCGTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (7 bp):
ACCCTAA
Found at i:32374985 original size:39 final size:39
Alignment explanation
Indices: 32374942--32375040 Score: 117
Period size: 39 Copynumber: 2.5 Consensus size: 39
32374932 CATATTCACT
* * *
32374942 TTTAAGCATGTATCACATTACACATATATTCACATAACA
1 TTTAAGCATATATCACAATACACATATAATCACATAACA
* ** *
32374981 TTTAAGCATATATAACAATACTTATATAATCACTTAACA
1 TTTAAGCATATATCACAATACACATATAATCACATAACA
* *
32375020 TTCAAGTATATATCACAATAC
1 TTTAAGCATATATCACAATAC
32375041 TCAAAAACAT
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 50 1.00
ACGTcount: A:0.43, C:0.18, G:0.04, T:0.34
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACACATATAATCACATAACA
Found at i:32379684 original size:22 final size:22
Alignment explanation
Indices: 32379644--32379694 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
32379634 TATAGATTAA
*
32379644 TAAAAAATATAATAATAAT-GT
1 TAAATAATATAATAATAATAGT
*
32379665 TAAATAATAATAATAGTAATAGT
1 TAAATAAT-ATAATAATAATAGT
*
32379688 AAAATAA
1 TAAATAA
32379695 AACCGATAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 7 0.28
22 10 0.40
23 8 0.32
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (22 bp):
TAAATAATATAATAATAATAGT
Found at i:32382687 original size:27 final size:27
Alignment explanation
Indices: 32382657--32382708 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
32382647 TAATTCTTTG
* *
32382657 TCAAAAATAAAAAGATATAACTTTTAA
1 TCAAAAACAAAAAGATATAAATTTTAA
* *
32382684 TCAATAACCAAAAGATATAAATTTT
1 TCAAAAACAAAAAGATATAAATTTT
32382709 GATTAACACC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.56, C:0.10, G:0.04, T:0.31
Consensus pattern (27 bp):
TCAAAAACAAAAAGATATAAATTTTAA
Found at i:32384956 original size:31 final size:34
Alignment explanation
Indices: 32384918--32384991 Score: 91
Period size: 31 Copynumber: 2.3 Consensus size: 34
32384908 TTGACAAATA
* *
32384918 AAAAAGAAGAGAAAAAACG-A-TAGTC-AAGAAC
1 AAAAAGAAGAGAAAAAACGTAGCAGGCAAAGAAC
* *
32384949 AAAAAGAATAGAAAGAACGTAGCAGGCAAAGAAC
1 AAAAAGAAGAGAAAAAACGTAGCAGGCAAAGAAC
32384983 AAAAAGAAG
1 AAAAAGAAG
32384992 GTGAGAGGTT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
31 17 0.49
32 1 0.03
33 3 0.09
34 14 0.40
ACGTcount: A:0.64, C:0.09, G:0.22, T:0.05
Consensus pattern (34 bp):
AAAAAGAAGAGAAAAAACGTAGCAGGCAAAGAAC
Found at i:32386113 original size:118 final size:118
Alignment explanation
Indices: 32385905--32386132 Score: 343
Period size: 118 Copynumber: 1.9 Consensus size: 118
32385895 TTATAGGTCA
** * *
32385905 GTATGTTATGATTGTTGAAGAGTAAAAATGTTAAAATACGTAAGAACAGTAAGGTGTAAGTGGAA
1 GTATGTTACAATTGTTGAAGAGTAAAAATGTTAAAACACGTAAGAACAGTAAGGTGTAAGAGGAA
* *
32385970 GACCTTGTATGGGGGTCACATATAGT-TAAGACATTAGTAAACTATATATCTCT
66 GACCTTGCATGGGGGTCACATATAGTGGAA-ACATTAGTAAACTATATATCTCT
* * *
32386023 GTATGTTACAATTGTTGAAGAGTAAGAATGTTAAAACATGTAAGAACAGT-AGGATGTGAGAGGA
1 GTATGTTACAATTGTTGAAGAGTAAAAATGTTAAAACACGTAAGAACAGTAAGG-TGTAAGAGGA
32386087 AGACCTTGCATGGGGGTCACATATAGTGGAAACATTAGTAAACTAT
65 AGACCTTGCATGGGGGTCACATATAGTGGAAACATTAGTAAACTAT
32386133 CTGTAGTAGG
Statistics
Matches: 99, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
117 3 0.03
118 94 0.95
119 2 0.02
ACGTcount: A:0.38, C:0.09, G:0.25, T:0.29
Consensus pattern (118 bp):
GTATGTTACAATTGTTGAAGAGTAAAAATGTTAAAACACGTAAGAACAGTAAGGTGTAAGAGGAA
GACCTTGCATGGGGGTCACATATAGTGGAAACATTAGTAAACTATATATCTCT
Found at i:32386962 original size:26 final size:26
Alignment explanation
Indices: 32386907--32386969 Score: 69
Period size: 25 Copynumber: 2.4 Consensus size: 26
32386897 TTTGTAGGAC
32386907 GTTATTTGAAAAGCCTATGTGGCATA
1 GTTATTTGAAAAGCCTATGTGGCATA
*
32386933 -TTATTTGGAAAGCC-ATAGTGGCGA-A
1 GTTATTTGAAAAGCCTAT-GTGGC-ATA
32386958 GTTATCTTGAAA
1 GTTAT-TTGAAA
32386970 CCATGTATTG
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
24 2 0.06
25 19 0.61
26 5 0.16
27 5 0.16
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (26 bp):
GTTATTTGAAAAGCCTATGTGGCATA
Found at i:32389094 original size:106 final size:106
Alignment explanation
Indices: 32388909--32389120 Score: 406
Period size: 106 Copynumber: 2.0 Consensus size: 106
32388899 AGTATTTTGC
32388909 ATGTCACAGAAATCACTAAGTATCAAATCAAGCATTATTGTTTTCCTTTTAACCTTAGGGGAAGG
1 ATGTCACAGAAATCACTAAGTATCAAATCAAGCATTATTGTTTTCCTTTTAACCTTAGGGGAAGG
32388974 GTTTCTAGTAATTTTAGTCAACATACATGTATTGAATTTTT
66 GTTTCTAGTAATTTTAGTCAACATACATGTATTGAATTTTT
*
32389015 ATGTCACATAAATCACTAAGTATCAAATCAAGCATTATTGTTTTCCTTTTAACCTTAGGGGAAGG
1 ATGTCACAGAAATCACTAAGTATCAAATCAAGCATTATTGTTTTCCTTTTAACCTTAGGGGAAGG
*
32389080 GTTTCTAGTAATTTTAGTCAACATACTTGTATTGAATTTTT
66 GTTTCTAGTAATTTTAGTCAACATACATGTATTGAATTTTT
32389121 CAATATTATT
Statistics
Matches: 104, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
106 104 1.00
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.40
Consensus pattern (106 bp):
ATGTCACAGAAATCACTAAGTATCAAATCAAGCATTATTGTTTTCCTTTTAACCTTAGGGGAAGG
GTTTCTAGTAATTTTAGTCAACATACATGTATTGAATTTTT
Found at i:32394473 original size:23 final size:23
Alignment explanation
Indices: 32394447--32394498 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
32394437 GGAATAAGCT
* * *
32394447 TTTGTGTCGTATTCCAGAATGCC
1 TTTGTGACGTATTCCAAAATACC
32394470 TTTGTGACGTATTCCAAAATACC
1 TTTGTGACGTATTCCAAAATACC
32394493 TTTGTG
1 TTTGTG
32394499 GCATAATCTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.40
Consensus pattern (23 bp):
TTTGTGACGTATTCCAAAATACC
Found at i:32394517 original size:23 final size:23
Alignment explanation
Indices: 32394459--32394518 Score: 57
Period size: 23 Copynumber: 2.6 Consensus size: 23
32394449 TGTGTCGTAT
* * *
32394459 TCCAGAATGCCTTTGTGACGTAT
1 TCCAAAATGCCTTTGTGACATAA
* *
32394482 TCCAAAATACCTTTGTGGCATAA
1 TCCAAAATGCCTTTGTGACATAA
* *
32394505 TCTATAATGCCTTT
1 TCCAAAATGCCTTT
32394519 ACAACGTATT
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.37
Consensus pattern (23 bp):
TCCAAAATGCCTTTGTGACATAA
Found at i:32397340 original size:51 final size:51
Alignment explanation
Indices: 32397280--32397397 Score: 139
Period size: 51 Copynumber: 2.3 Consensus size: 51
32397270 ATAGTGAATT
** * *
32397280 TTATTTCCCTGGCATTGC-AGTGGAACGGATTAAAGCTGAAGGCAGCAAATC
1 TTATTTCCCTGGCATT-CTAACGGAACAGATTAAAGCTGAAGGCAACAAATC
* *
32397331 TTATTTCCCTGGCATTCTAACGGAACAGATTAAAGTTGAAGGCAACGAATC
1 TTATTTCCCTGGCATTCTAACGGAACAGATTAAAGCTGAAGGCAACAAATC
* * *
32397382 TCATCTCCCTAGCATT
1 TTATTTCCCTGGCATT
32397398 TAAAATTGAC
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
50 1 0.02
51 56 0.98
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (51 bp):
TTATTTCCCTGGCATTCTAACGGAACAGATTAAAGCTGAAGGCAACAAATC
Found at i:32398079 original size:4 final size:4
Alignment explanation
Indices: 32398070--32398102 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
32398060 TTTTTTTCAG
32398070 TTTA TTTA TTTA -TT- TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
32398103 CGAAGGAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
3 4 0.15
4 23 0.85
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (4 bp):
TTTA
Found at i:32398089 original size:14 final size:14
Alignment explanation
Indices: 32398070--32398098 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
32398060 TTTTTTTCAG
32398070 TTTATTTATTTATT
1 TTTATTTATTTATT
32398084 TTTATTTATTTATT
1 TTTATTTATTTATT
32398098 T
1 T
32398099 ATTTCGAAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTATTTATTTATT
Found at i:32398891 original size:31 final size:30
Alignment explanation
Indices: 32398856--32398915 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
32398846 NNNNNNGGGA
*
32398856 TGGGAAGAGAATAAAAGTTTTAGGGGAAAAG
1 TGGG-AGAGAATAAAAATTTTAGGGGAAAAG
* * *
32398887 TGGGAGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAGAGAATAAAAATTTTAGGGGAAAA
32398916 TGAAAGGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.42, C:0.00, G:0.38, T:0.20
Consensus pattern (30 bp):
TGGGAGAGAATAAAAATTTTAGGGGAAAAG
Found at i:32399144 original size:9 final size:9
Alignment explanation
Indices: 32399130--32399166 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
32399120 TATAGTTTGA
32399130 TATTCGAAT
1 TATTCGAAT
32399139 TATTCGAAT
1 TATTCGAAT
*
32399148 TATTCGAGT
1 TATTCGAAT
32399157 TATTCGAAT
1 TATTCGAAT
32399166 T
1 T
32399167 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:32399236 original size:9 final size:9
Alignment explanation
Indices: 32399219--32399249 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
32399209 TCGAGTTGAT
32399219 TCGAATAAC
1 TCGAATAAC
*
32399228 TCGATTAAC
1 TCGAATAAC
32399237 TCGAATAAC
1 TCGAATAAC
32399246 TCGA
1 TCGA
32399250 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:32404108 original size:13 final size:13
Alignment explanation
Indices: 32404079--32404114 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
32404069 TCGTTTTAGG
32404079 TTGGGTT-GGTAA
1 TTGGGTTGGGTAA
*
32404091 CTGGGTTGGGTAA
1 TTGGGTTGGGTAA
32404104 TTGGGTTGGGT
1 TTGGGTTGGGT
32404115 TAGATAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.11, C:0.03, G:0.47, T:0.39
Consensus pattern (13 bp):
TTGGGTTGGGTAA
Found at i:32406214 original size:17 final size:17
Alignment explanation
Indices: 32406188--32406221 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
32406178 TTATAGAATA
32406188 AAATCCTCTAAGATTAC
1 AAATCCTCTAAGATTAC
*
32406205 AAATCTTCTAAGATTAC
1 AAATCCTCTAAGATTAC
32406222 TTCCTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.41, C:0.21, G:0.06, T:0.32
Consensus pattern (17 bp):
AAATCCTCTAAGATTAC
Found at i:32411172 original size:3 final size:3
Alignment explanation
Indices: 32411164--32411207 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
32411154 ACTAAACATT
32411164 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
32411208 TCTGTACTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:32411392 original size:16 final size:16
Alignment explanation
Indices: 32411360--32411389 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
32411350 TGATGTGATA
32411360 TATTATTATTTTAAAT
1 TATTATTATTTTAAAT
32411376 TATTATT-TTTTAAA
1 TATTATTATTTTAAA
32411390 ATTTATCATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
TATTATTATTTTAAAT
Found at i:32413511 original size:25 final size:26
Alignment explanation
Indices: 32413447--32413511 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
32413437 TTTTCTATAG
32413447 TGCTCACACGAGCTATAAAATGGGTC
1 TGCTCACACGAGCTATAAAATGGGTC
* * * *
32413473 TGCTTACACAAGCTATAAAGT-GTTC
1 TGCTCACACGAGCTATAAAATGGGTC
*
32413498 TGCTCACATGAGCT
1 TGCTCACACGAGCT
32413512 GTGGGTCATA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
25 14 0.44
26 18 0.56
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (26 bp):
TGCTCACACGAGCTATAAAATGGGTC
Found at i:32428200 original size:44 final size:43
Alignment explanation
Indices: 32428146--32428444 Score: 223
Period size: 44 Copynumber: 6.8 Consensus size: 43
32428136 GTAGATCTGG
*
32428146 TCTCCCTAAGCAGCAGCGGAGCAGATCGAAGACGGTGAATCTTA
1 TCTCCCTAAGCAGCAGCGGAGCAGATTGAAGACGGT-AATCTTA
* * *
32428190 TCTTCCTAAGCTAGTAG-GGAAGCAGATTTAAGCTAC--TAATCTTA
1 TCTCCCTAAGC-AGCAGCGG-AGCAGATTGAAG--ACGGTAATCTTA
** * * ** **
32428234 TCTCCCTAAGCAGCAGTAGAGTAGGTTGAAGAATGTAGATCTGG
1 TCTCCCTAAGCAGCAGCGGAGCAGATTGAAGACGGTA-ATCTTA
*
32428278 TCTCCCTAAGCAGCAGCGGAGCAGATCGAAGACGGTGAATCTTA
1 TCTCCCTAAGCAGCAGCGGAGCAGATTGAAGACGGT-AATCTTA
* * *
32428322 TCTTCCTAAGCTAGTAG-GGAAGCAGATTTAAGCTAC--TAATCTTA
1 TCTCCCTAAGC-AGCAGCGG-AGCAGATTGAAG--ACGGTAATCTTA
** * * ** **
32428366 TCTCCCTAAGCAGCAGTAGAGTAGGTTGAAGAATGTAGATCTGG
1 TCTCCCTAAGCAGCAGCGGAGCAGATTGAAGACGGTA-ATCTTA
*
32428410 TCTCCCTAAGCAGCAGCGGAGCAGATCGAAGACGG
1 TCTCCCTAAGCAGCAGCGGAGCAGATTGAAGACGG
32428445 CAAATATTAT
Statistics
Matches: 196, Mismatches: 42, Indels: 34
0.72 0.15 0.12
Matches are distributed among these distances:
41 2 0.01
43 30 0.15
44 129 0.66
45 31 0.16
47 4 0.02
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (43 bp):
TCTCCCTAAGCAGCAGCGGAGCAGATTGAAGACGGTAATCTTA
Found at i:32428268 original size:132 final size:131
Alignment explanation
Indices: 32428031--32428623 Score: 787
Period size: 132 Copynumber: 4.5 Consensus size: 131
32428021 NNNNNNNNNN
* * *
32428031 GGAGCAGATCGAAGACGATGAATCTTATCTTCCCAAGTTAATAGGGAAGCAGATTTAAGCCACTA
1 GGAGCAGATCGAAGACGGTGAATCTTATCTT-CCAAGCTAGTAGGGAAGCAGATTTAAGCCACTA
* * * *
32428096 ATCCTATCTCCTTGAGCAACAGTGGAGTAGGTTGAAGAATGTAGATCTGGTCTCCCTAAGCAGCA
65 ATCCTATCTCCCTAAGCAGCAGTAGAGTAGGTTGAAGAATGTAGATCTGGTCTCCCTAAGCAGCA
32428161 GC
130 GC
*
32428163 GGAGCAGATCGAAGACGGTGAATCTTATCTTCCTAAGCTAGTAGGGAAGCAGATTTAAGCTACTA
1 GGAGCAGATCGAAGACGGTGAATCTTATCTTCC-AAGCTAGTAGGGAAGCAGATTTAAGCCACTA
*
32428228 ATCTTATCTCCCTAAGCAGCAGTAGAGTAGGTTGAAGAATGTAGATCTGGTCTCCCTAAGCAGCA
65 ATCCTATCTCCCTAAGCAGCAGTAGAGTAGGTTGAAGAATGTAGATCTGGTCTCCCTAAGCAGCA
32428293 GC
130 GC
*
32428295 GGAGCAGATCGAAGACGGTGAATCTTATCTTCCTAAGCTAGTAGGGAAGCAGATTTAAGCTACTA
1 GGAGCAGATCGAAGACGGTGAATCTTATCTTCC-AAGCTAGTAGGGAAGCAGATTTAAGCCACTA
*
32428360 ATCTTATCTCCCTAAGCAGCAGTAGAGTAGGTTGAAGAATGTAGATCTGGTCTCCCTAAGCAGCA
65 ATCCTATCTCCCTAAGCAGCAGTAGAGTAGGTTGAAGAATGTAGATCTGGTCTCCCTAAGCAGCA
32428425 GC
130 GC
** *
32428427 GGAGCAGATCGAAGACGGCAAATATTATCTT-CAAGTCTA--A-GGAAGCAGATTTAAGCCAC-A
1 GGAGCAGATCGAAGACGGTGAATCTTATCTTCCAAG-CTAGTAGGGAAGCAGATTTAAGCCACTA
* * * * * * *
32428487 AGTCCTATATCCCT-GGTCAGCAGTGGAATAGGTTG-GGAAAT-TACAAATCTTGTCTCCCTAAG
65 A-TCCTATCTCCCTAAG-CAGCAGTAGAGTAGGTTGAAG-AATGT--AGATCTGGTCTCCCTAAG
*
32428549 CAGTAGC
125 CAGCAGC
* * *
32428556 GGAGCAGATCGAAGATGGCGAATCTTATCTT-CAAG-T-GTAAGGAAGCAGATTTAAGCCAC-AA
1 GGAGCAGATCGAAGACGGTGAATCTTATCTTCCAAGCTAGTAGGGAAGCAGATTTAAGCCACTAA
32428617 GTCCTAT
66 -TCCTAT
32428624 ATCNNNNNNN
Statistics
Matches: 426, Mismatches: 25, Indels: 23
0.90 0.05 0.05
Matches are distributed among these distances:
127 6 0.01
128 48 0.11
129 83 0.19
130 3 0.01
131 6 0.01
132 280 0.66
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.24
Consensus pattern (131 bp):
GGAGCAGATCGAAGACGGTGAATCTTATCTTCCAAGCTAGTAGGGAAGCAGATTTAAGCCACTAA
TCCTATCTCCCTAAGCAGCAGTAGAGTAGGTTGAAGAATGTAGATCTGGTCTCCCTAAGCAGCAG
C
Found at i:32428455 original size:88 final size:88
Alignment explanation
Indices: 32428095--32428456 Score: 241
Period size: 88 Copynumber: 4.1 Consensus size: 88
32428085 TTAAGCCACT
* * * * * * *
32428095 AATCCTATCTCCTTGAGCAACAGTGGAGTAGGTTGAAGAATGTAGATCTGGTCTCCCTAAGCAGC
1 AATCTTATCTCCCTAAGCAGCAGTGGAGCAGATTGAAGAATGTAGATCTGATCTCCCTAAGCAGC
**
32428160 AGCGGAGCAGATCGAAGACGGTG
66 AGCGGAGCAGATCGAAGACGGCA
* * * * * *
32428183 AATCTTATCTTCCTAAGCTAGTAG-GGAAGCAGATTTAAG-CTACTA-ATCTTATCTCCCTAAGC
1 AATCTTATCTCCCTAAGC-AGCAGTGG-AGCAGATTGAAGAAT-GTAGATCTGATCTCCCTAAGC
** * * * ** *
32428245 AGCAGTAGAGTAGGTTGAAGAATGTA
63 AGCAGCGGAGCAGATCGAAGACGGCA
* ** * * ** * *
32428271 GATCTGGTCTCCCTAAGCAGCAGCGGAGCAGATCGAAGACGGT-GAATCTTATCTTCCTAAGCTA
1 AATCTTATCTCCCTAAGCAGCAGTGGAGCAGATTGAAGAATGTAG-ATCTGATCTCCCTAAGC-A
* ** ** *
32428335 GTAG-GGAAGCAGATTTAAG-CTACT
64 GCAGCGG-AGCAGATCGAAGACGGCA
* * * *
32428359 AATCTTATCTCCCTAAGCAGCAGTAGAGTAGGTTGAAGAATGTAGATCTGGTCTCCCTAAGCAGC
1 AATCTTATCTCCCTAAGCAGCAGTGGAGCAGATTGAAGAATGTAGATCTGATCTCCCTAAGCAGC
32428424 AGCGGAGCAGATCGAAGACGGCA
66 AGCGGAGCAGATCGAAGACGGCA
*
32428447 AATATTATCT
1 AATCTTATCT
32428457 TCAAGTCTAA
Statistics
Matches: 202, Mismatches: 60, Indels: 24
0.71 0.21 0.08
Matches are distributed among these distances:
87 29 0.14
88 145 0.72
89 28 0.14
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (88 bp):
AATCTTATCTCCCTAAGCAGCAGTGGAGCAGATTGAAGAATGTAGATCTGATCTCCCTAAGCAGC
AGCGGAGCAGATCGAAGACGGCA
Found at i:32431145 original size:12 final size:12
Alignment explanation
Indices: 32431128--32431153 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
32431118 CGGTACCAAT
32431128 TTTGGCTAAGAG
1 TTTGGCTAAGAG
32431140 TTTGGCTAAGAG
1 TTTGGCTAAGAG
32431152 TT
1 TT
32431154 GCTTTTGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.08, G:0.31, T:0.38
Consensus pattern (12 bp):
TTTGGCTAAGAG
Found at i:32432871 original size:7 final size:7
Alignment explanation
Indices: 32432859--32432884 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
32432849 ATACTAATCA
32432859 CCTCCTT
1 CCTCCTT
32432866 CCTCCTT
1 CCTCCTT
32432873 CCTCCTT
1 CCTCCTT
32432880 CCTCC
1 CCTCC
32432885 ATTTTAAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38
Consensus pattern (7 bp):
CCTCCTT
Found at i:32435469 original size:16 final size:16
Alignment explanation
Indices: 32435443--32435484 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
32435433 AGAAATGGAT
* *
32435443 ATAATGATTGA-AAAC
1 ATAATGTTTGATAAAA
32435458 ATAAATGTTTGATAAAA
1 AT-AATGTTTGATAAAA
32435475 ATAATGTTTG
1 ATAATGTTTG
32435485 TGGGAAAACA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 2 0.09
16 16 0.70
17 5 0.22
ACGTcount: A:0.48, C:0.02, G:0.14, T:0.36
Consensus pattern (16 bp):
ATAATGTTTGATAAAA
Found at i:32439358 original size:26 final size:26
Alignment explanation
Indices: 32439328--32439387 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
32439318 AATTTTCTCG
** *
32439328 AAATTTTATTGGGAGTAAAATCATCA
1 AAATTTTATCAGGAATAAAATCATCA
**
32439354 AAATTTTATCAGGAATAAAATTGTCA
1 AAATTTTATCAGGAATAAAATCATCA
32439380 AAATTTTA
1 AAATTTTA
32439388 CTGTTATAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.45, C:0.07, G:0.12, T:0.37
Consensus pattern (26 bp):
AAATTTTATCAGGAATAAAATCATCA
Found at i:32441275 original size:19 final size:20
Alignment explanation
Indices: 32441251--32441291 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
32441241 ATGATCACGT
32441251 CAATGCACATTTTGT-AAAA
1 CAATGCACATTTTGTGAAAA
*
32441270 CAATGCAGATTTTGTGAAAA
1 CAATGCACATTTTGTGAAAA
32441290 CA
1 CA
32441292 GTCCTACCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.29
Consensus pattern (20 bp):
CAATGCACATTTTGTGAAAA
Found at i:32441444 original size:47 final size:47
Alignment explanation
Indices: 32441354--32441445 Score: 112
Period size: 47 Copynumber: 2.0 Consensus size: 47
32441344 TCCAACACAC
* *
32441354 CAAATTATGAACAATGTCACAATAACGTAGATAAACTGCCATATAAT
1 CAAATTATGAACAATGTCACAATAACGCAGATAAACTACCATATAAT
* * * * * *
32441401 CAAATTGTGAACAGTGTCACATTAATGCAGATAAATTATCATATA
1 CAAATTATGAACAATGTCACAATAACGCAGATAAACTACCATATA
32441446 CTTCCACCTT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
47 37 1.00
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.28
Consensus pattern (47 bp):
CAAATTATGAACAATGTCACAATAACGCAGATAAACTACCATATAAT
Found at i:32443590 original size:309 final size:309
Alignment explanation
Indices: 32443026--32443643 Score: 1119
Period size: 309 Copynumber: 2.0 Consensus size: 309
32443016 GTTGATTAGG
*
32443026 AGACTTGAATCTATAACTCATATGATATTAATTTAATAAGAAAATAAATAAAACATGGGATGATC
1 AGACTTGAATCTATAACTCATATGATATTAATTTAATAAGAAAATAAATAAAACATGAGATGATC
*
32443091 TATGTAAGGGTTTGAAACAAATTTGCACCAAATAGAAATTAACGAGAAGGAAGGGATTCGAACAC
66 TACGTAAGGGTTTGAAACAAATTTGCACCAAATAGAAATTAACGAGAAGGAAGGGATTCGAACAC
* *
32443156 AAATCATCAATGACAGCTCCACCACTACTCAATCATTATAATTGATATCTATTTATTACCAAATG
131 AAATCATCAAGGACAGCTCCACCACTACTCAATCATTATAATTGATATCTATTTATTACCAAATA
*
32443221 TGCGAAGATAACCTTAAAAAAATCAAGGCGTGACCGTTCTCAGTTCATGAACTCAATTTCTACTA
196 TGCGAAGATAACCTTAAAAAAATCAAGGCGTGACCGCTCTCAGTTCATGAACTCAATTTCTACTA
32443286 ACCCGATTTTTGGGATGCTACAAATCCACCTACTGAGTGCATCACAGTC
261 ACCCGATTTTTGGGATGCTACAAATCCACCTACTGAGTGCATCACAGTC
32443335 AGACTTGAATCTATAACTCATATGATATTAATTTAATAAGAAAATAAATAAAACATGAGATGATC
1 AGACTTGAATCTATAACTCATATGATATTAATTTAATAAGAAAATAAATAAAACATGAGATGATC
* * *
32443400 TACGTAAGGGTTTGAAACAAATTTGCACCAAATAGAAATTAATGAGAGGGAAGGGATTTGAACAC
66 TACGTAAGGGTTTGAAACAAATTTGCACCAAATAGAAATTAACGAGAAGGAAGGGATTCGAACAC
32443465 AAATCATCAAGGACAGCTCCACCACTACTCAATCATTATAATTGATATCTATTTATTACCAAATA
131 AAATCATCAAGGACAGCTCCACCACTACTCAATCATTATAATTGATATCTATTTATTACCAAATA
* * * *
32443530 TGCGAAGATAACCTTAAAAAAATTAGGGTGTGACCGCTCTCAGTTCATGAACTTAATTTCTACTA
196 TGCGAAGATAACCTTAAAAAAATCAAGGCGTGACCGCTCTCAGTTCATGAACTCAATTTCTACTA
*
32443595 ACCCGATTTTTTGGATGCTACAAATCCACCTACTGAGTGCATCACAGTC
261 ACCCGATTTTTGGGATGCTACAAATCCACCTACTGAGTGCATCACAGTC
32443644 TTCTAAATAT
Statistics
Matches: 296, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
309 296 1.00
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28
Consensus pattern (309 bp):
AGACTTGAATCTATAACTCATATGATATTAATTTAATAAGAAAATAAATAAAACATGAGATGATC
TACGTAAGGGTTTGAAACAAATTTGCACCAAATAGAAATTAACGAGAAGGAAGGGATTCGAACAC
AAATCATCAAGGACAGCTCCACCACTACTCAATCATTATAATTGATATCTATTTATTACCAAATA
TGCGAAGATAACCTTAAAAAAATCAAGGCGTGACCGCTCTCAGTTCATGAACTCAATTTCTACTA
ACCCGATTTTTGGGATGCTACAAATCCACCTACTGAGTGCATCACAGTC
Found at i:32449434 original size:13 final size:12
Alignment explanation
Indices: 32449399--32449432 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
32449389 CTAAATCATG
*
32449399 AGTCAGATTGGTT
1 AGTCA-ATTTGTT
32449412 AGTCAATTTGTT
1 AGTCAATTTGTT
32449424 AGTCAATTT
1 AGTCAATTT
32449433 TGGCAAAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 15 0.75
13 5 0.25
ACGTcount: A:0.26, C:0.09, G:0.21, T:0.44
Consensus pattern (12 bp):
AGTCAATTTGTT
Found at i:32455549 original size:19 final size:19
Alignment explanation
Indices: 32455496--32455552 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 19
32455486 TCATCTTTCA
32455496 ATAAAAATATATA-AGAATTT
1 ATAAAAATATATATA-AA-TT
* *
32455516 ATAATAATACATATAAATT
1 ATAAAAATATATATAAATT
*
32455535 ATAAAAATATTTATAAAT
1 ATAAAAATATATATAAAT
32455553 AAATGAATAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
19 17 0.55
20 13 0.42
21 1 0.03
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (19 bp):
ATAAAAATATATATAAATT
Found at i:32461623 original size:135 final size:136
Alignment explanation
Indices: 32461462--32461736 Score: 527
Period size: 135 Copynumber: 2.0 Consensus size: 136
32461452 TAGGAGTATC
*
32461462 ATATTAGTTGATATTTTCTAGTGATTTACGTATCAGGTTTGTTCTTATTTTTTAGTGATTTTTTA
1 ATATTAGTTGATATTTTCTAGTGATTTACGTATCAGGTTTGTTCCTATTTTTTAGTGATTTTTTA
32461527 GTTGTAATTCAGCCTATATAAAGGTTTCATTATTCATTCAATAAAGTGCTTCAGAATTCA-ATTA
66 GTTGTAATTCAGCCTATATAAAGGTTTCATTATTCATTCAATAAAGTGCTTCAGAATTCATATTA
32461591 TCAGAG
131 TCAGAG
32461597 ATATTAGTTGATATTTTCTAGTGATTTACGTATCAGGTTTGTTCCTATTTTTTAGTGATTTTTTA
1 ATATTAGTTGATATTTTCTAGTGATTTACGTATCAGGTTTGTTCCTATTTTTTAGTGATTTTTTA
32461662 GTTGTAATTCAGCCTATATAAAGGTTTCATTATTCATTCAATAAAGTGCTTCAGAATTCATATTA
66 GTTGTAATTCAGCCTATATAAAGGTTTCATTATTCATTCAATAAAGTGCTTCAGAATTCATATTA
32461727 TCAGAG
131 TCAGAG
32461733 -TATT
1 ATATT
32461737 TCAAACTTCT
Statistics
Matches: 138, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
135 128 0.93
136 10 0.07
ACGTcount: A:0.28, C:0.11, G:0.15, T:0.47
Consensus pattern (136 bp):
ATATTAGTTGATATTTTCTAGTGATTTACGTATCAGGTTTGTTCCTATTTTTTAGTGATTTTTTA
GTTGTAATTCAGCCTATATAAAGGTTTCATTATTCATTCAATAAAGTGCTTCAGAATTCATATTA
TCAGAG
Found at i:32471050 original size:8 final size:9
Alignment explanation
Indices: 32471026--32471052 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
32471016 CTATTTTTAT
32471026 TTTAAAAAA
1 TTTAAAAAA
32471035 TTTAAAAAA
1 TTTAAAAAA
32471044 TTTAAAAAA
1 TTTAAAAAA
32471053 GTATTTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
TTTAAAAAA
Found at i:32471061 original size:31 final size:31
Alignment explanation
Indices: 32471023--32471114 Score: 116
Period size: 31 Copynumber: 3.0 Consensus size: 31
32471013 GGCCTATTTT
32471023 TATTTTAAAAA-ATTTAAAAAATTTAAAAAAG
1 TATTTTAAAAATATTT-AAAAATTTAAAAAAG
*
32471054 TATTTTAAAAATATTTTAAAA-TTAAAAAAG
1 TATTTTAAAAATATTTAAAAATTTAAAAAAG
* * *
32471084 TATGTAAAAAATATTTTAAAATTTTAAAAAA
1 TATTTTAAAAATA-TTTAAAAATTTAAAAAA
32471115 TAAATATATT
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
30 20 0.38
31 21 0.40
32 12 0.23
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (31 bp):
TATTTTAAAAATATTTAAAAATTTAAAAAAG
Found at i:32471079 original size:30 final size:30
Alignment explanation
Indices: 32471023--32471106 Score: 116
Period size: 30 Copynumber: 2.8 Consensus size: 30
32471013 GGCCTATTTT
*
32471023 TATTTTAAAAA-ATTTAAAAAATTTAAAAAAG
1 TATTTTAAAAATATTT-TAAAA-TTAAAAAAG
32471054 TATTTTAAAAATATTTTAAAATTAAAAAAG
1 TATTTTAAAAATATTTTAAAATTAAAAAAG
* *
32471084 TATGTAAAAAATATTTTAAAATT
1 TATTTTAAAAATATTTTAAAATT
32471107 TTAAAAAATA
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
30 30 0.61
31 15 0.31
32 4 0.08
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (30 bp):
TATTTTAAAAATATTTTAAAATTAAAAAAG
Found at i:32471104 original size:11 final size:11
Alignment explanation
Indices: 32471023--32471074 Score: 65
Period size: 11 Copynumber: 4.9 Consensus size: 11
32471013 GGCCTATTTT
32471023 TATTTTAAAAA
1 TATTTTAAAAA
32471034 -A-TTTAAAAA
1 TATTTTAAAAA
*
32471043 -ATTTAAAAAA
1 TATTTTAAAAA
32471053 GTATTTTAAAAA
1 -TATTTTAAAAA
32471065 TATTTTAAAA
1 TATTTTAAAA
32471075 TTAAAAAAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
9 9 0.25
10 8 0.22
11 10 0.28
12 9 0.25
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (11 bp):
TATTTTAAAAA
Done.