Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4353

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 327

Length: 546
ACGTcount: A:0.32, C:0.12, G:0.13, T:0.42


Found at i:207 original size:8 final size:8

Alignment explanation


    Indices: 188--220  Score: 50
    Period size: 8  Copynumber: 4.1  Consensus size: 8

        178 TCTTTTATAA

                     
        188 TTTGATTTT
          1 TTTGA-TTT

                    
        197 TTTGATTT
          1 TTTGATTT

                    
        205 TTTGA-TT
          1 TTTGATTT

                    
        212 TTTGATTT
          1 TTTGATTT

             
        220 T
          1 T

        221 ACTTTTTGAA


Statistics
Matches: 23,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
   7    7  0.30
   8   11  0.48
   9    5  0.22

ACGTcount: A:0.12, C:0.00, G:0.12, T:0.76


Consensus pattern (8 bp):   
TTTGATTT
Done.