genome.fa.s131.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold550
Parameters: 2 7 7 80 10 50 1000
Length:  65816

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
831--884	23	2.5	22	82	8	58	44	0	7	48	1.31
833--899	20	3.2	21	73	14	50	47	0	7	44	1.31
916--948	11	3.1	11	86	8	50	15	3	0	81	0.80
1170--1211	14	3.0	14	82	6	50	40	28	2	28	1.69
1174--1235	20	3.0	20	84	11	65	37	40	1	20	1.63
1811--1909	41	2.4	41	94	0	171	37	22	22	18	1.94
1798--1953	41	3.8	40	85	5	147	33	25	22	19	1.97
1986--2068	40	2.1	41	86	4	116	21	22	16	38	1.93
1993--2085	39	2.3	38	80	12	107	22	24	18	34	1.96
2855--2907	24	2.2	24	86	0	70	54	9	3	32	1.50
7584--7628	18	2.6	17	86	10	56	33	0	2	64	1.06
12894--12963	28	2.5	29	88	4	108	38	7	1	52	1.38
13022--13128	27	4.0	27	90	0	151	27	29	27	15	1.96
13208--13236	14	2.1	14	100	0	58	37	6	0	55	1.27
16289--16357	19	3.7	19	86	5	106	53	0	10	36	1.35
16432--16509	27	2.9	27	87	7	106	19	29	21	29	1.98
16433--16518	27	3.2	26	86	4	102	19	26	22	31	1.98
24307--24367	25	2.3	27	86	13	90	45	13	8	32	1.72
27233--27257	6	4.2	6	100	0	50	64	0	36	0	0.94
29549--29579	6	5.2	6	100	0	62	16	51	16	16	1.77
37350--37375	6	4.3	6	100	0	52	50	34	15	0	1.45
40233--40308	21	3.5	21	68	16	64	52	3	5	38	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40236--40324	45	2.0	45	95	0	160	52	6	4	35	1.48
41555--41593	20	1.9	21	85	15	55	35	10	10	43	1.73
43959--44001	20	2.2	20	100	0	86	32	9	9	48	1.67
46377--46435	17	3.4	17	72	21	59	61	5	8	25	1.46
46365--46436	35	2.1	35	97	0	135	56	6	8	27	1.54
48755--48802	24	2.0	24	87	0	69	25	6	25	43	1.77
49808--49863	23	2.4	23	87	0	76	35	26	26	10	1.89
55141--55227	11	8.3	11	65	19	51	22	31	3	42	1.70
55152--55251	51	2.0	51	86	4	139	25	28	3	44	1.69
57358--57524	49	3.4	49	98	0	316	41	2	8	46	1.50
60780--61064	124	2.3	124	93	0	498	29	20	18	32	1.96
61751--61890	67	2.1	67	84	5	178	60	5	9	25	1.50
62756--62806	22	2.3	22	74	12	52	74	1	11	11	1.15
63814--63863	22	2.3	21	80	16	57	40	0	2	58	1.10
65214--65371	82	1.9	82	88	0	235	31	15	24	27	1.96

Tables:   1

The End!