Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2547

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 547

Length: 912
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28


Found at i:832 original size:23 final size:21

Alignment explanation


    Indices: 795--846  Score: 59
    Period size: 21  Copynumber: 2.4  Consensus size: 21

        785 ACACCTGCAA

                  *             *  
        795 TAAACACATTAAAACAAACTTAT
          1 TAAACATATTAAAAC--ACTAAT

                      *          
        818 TAAACATATTTAAACACTAAT
          1 TAAACATATTAAAACACTAAT

                    
        839 TAAACATA
          1 TAAACATA

        847 GCAAATATAA


Statistics
Matches: 26,  Mismatches: 3, Indels: 2
        0.84            0.10        0.06

Matches are distributed among these distances:
  21   13  0.50
  23   13  0.50

ACGTcount: A:0.56, C:0.15, G:0.00, T:0.29


Consensus pattern (21 bp):   
TAAACATATTAAAACACTAAT
Done.