Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3360

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 456

Length: 761
ACGTcount: A:0.12, C:0.13, G:0.10, T:0.21

Warning! 332 characters in sequence are not A, C, G, or T


Found at i:717 original size:11 final size:11

Alignment explanation


    Indices: 701--725  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

        691 CCGTATGCAA

                       
        701 TTTTTTTTGAT
          1 TTTTTTTTGAT

                       
        712 TTTTTTTTGAT
          1 TTTTTTTTGAT

               
        723 TTT
          1 TTT

        726 GAAAATTTTT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.08, C:0.00, G:0.08, T:0.84


Consensus pattern (11 bp):   
TTTTTTTTGAT
Done.