Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1750

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 800

Length: 1334
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.34


Found at i:343 original size:11 final size:11

Alignment explanation


    Indices: 329--400  Score: 54
    Period size: 11  Copynumber: 5.8  Consensus size: 11

        319 CATTGGTAAG

                       
        329 TATTTTCAAAA
          1 TATTTTCAAAA

                  *    
        340 TATTTTGAAAA
          1 TATTTTCAAAA

                           
        351 TATTTTAAACAATAA
          1 TATTTT---CAA-AA

                           
        366 TACTGCTATTCAAAA
          1 TA-T--T-TTCAAAA

                  *    
        381 TATTTTTAAAA
          1 TATTTTCAAAA

                     
        392 TATTTTCAA
          1 TATTTTCAA

        401 TATCCTAATC


Statistics
Matches: 49,  Mismatches: 4, Indels: 16
        0.71            0.06        0.23

Matches are distributed among these distances:
  11   30  0.61
  12    1  0.02
  14    3  0.06
  15    8  0.16
  16    4  0.08
  18    1  0.02
  19    2  0.04

ACGTcount: A:0.44, C:0.08, G:0.03, T:0.44


Consensus pattern (11 bp):   
TATTTTCAAAA
Done.