Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold195
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1506968
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 52797 characters in sequence are not A, C, G, or T
File 3 of 5
Found at i:660413 original size:17 final size:17
Alignment explanation
Indices: 660393--660456 Score: 58
Period size: 17 Copynumber: 3.8 Consensus size: 17
660383 GTCTATTAGT
660393 CGATACTGTCTGCCAGG
1 CGATACTGTCTGCCAGG
* * *
660410 CGATACAGTCCGCAAGG
1 CGATACTGTCTGCCAGG
**
660427 CGATA-TAGTCTGCCATA
1 CGATACT-GTCTGCCAGG
*
660444 CGATACTATCTGC
1 CGATACTGTCTGC
660457 TAGGAGAAAT
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
17 35 0.97
18 1 0.03
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (17 bp):
CGATACTGTCTGCCAGG
Found at i:669265 original size:193 final size:193
Alignment explanation
Indices: 668819--669280 Score: 469
Period size: 193 Copynumber: 2.4 Consensus size: 193
668809 ACAAATTCTC
* * * ** * *
668819 AATGAATATCAATGACTTAAACCAAATAAAAGGTCCCAAACTTGGTCTATTATGTTCATTAACAT
1 AATGAAAACCAATGACTTAAACC-CATAAAAAAT-TCAAACTTAGTCTA-TATGTTCATTAACAT
* * * * *
668884 --CATAAAAATTCATCAATTACATCCTAATAACAATTTCAACTCCAAAGTTGACTAAAGAAACTT
63 AACATAAAAA-TCATCAATTACATCCTAATAACAACTCCAACCCCAAAGTTAACTAAAGAAACAT
* * * * *
668947 TGCAGGATATGAAAACACAAGTGCATTTCCATTCAAGTAAATTGTTGTGTTGTAATCACAAAGTT
127 TGCAGGATATCAAAACACAAATGCATTTCCATTCAAGTAAAATATTGTGTTGTAATCACAAAGTC
669012 CA
192 CA
*
669014 AATGAAAACCAATGACTTGAACCCATAAAAAATTC-AACTTAGTCTAT-TGTATTCATTAACATC
1 AATGAAAACCAATGACTTAAACCCATAAAAAATTCAAACTTAGTCTATATG--TTCATTAACAT-
* * *
669077 AACATAAAAA-CATCAATTACTTCCTAATAACAACTCCAACCCCAAAGTTCAATTAAA-AACCAT
63 AACATAAAAATCATCAATTACATCCTAATAACAACTCCAACCCCAAAGTT-AACTAAAGAAACAT
**
669140 TGCAGGATA-CACAAATGCAAATGCATTTCCATTCAAGTAATAATATTGT-TT-TAATCACAAAG
127 TGCAGGATATCA-AAACACAAATGCATTTCCATTCAAGTAA-AATATTGTGTTGTAATCACAAAG
669202 CTCCA
190 -TCCA
* * * *
669207 AATGAAAACC-ATGACTTAAACCCACT-ATAGATTACAAACTTAGTCCATATGCTCATTAACATG
1 AATGAAAACCAATGACTTAAACCCA-TAAAAAATT-CAAACTTAGTCTATATGTTCATTAACAT-
669270 AACATTAAAAA
63 AACA-TAAAAA
669281 AATAATTCTA
Statistics
Matches: 224, Mismatches: 29, Indels: 29
0.79 0.10 0.10
Matches are distributed among these distances:
190 2 0.01
191 1 0.00
192 51 0.23
193 105 0.47
194 35 0.16
195 30 0.13
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (193 bp):
AATGAAAACCAATGACTTAAACCCATAAAAAATTCAAACTTAGTCTATATGTTCATTAACATAAC
ATAAAAATCATCAATTACATCCTAATAACAACTCCAACCCCAAAGTTAACTAAAGAAACATTGCA
GGATATCAAAACACAAATGCATTTCCATTCAAGTAAAATATTGTGTTGTAATCACAAAGTCCA
Found at i:672402 original size:8 final size:7
Alignment explanation
Indices: 672359--672481 Score: 54
Period size: 7 Copynumber: 17.3 Consensus size: 7
672349 AATTAATCTG
672359 AACCCTA
1 AACCCTA
672366 AACTCCT-
1 AAC-CCTA
*
672373 AATCCTA
1 AACCCTA
*
672380 AACCCTG
1 AACCCTA
672387 AACCCTA
1 AACCCTA
672394 AACCCCT-
1 AA-CCCTA
* *
672401 AACTCTT
1 AACCCTA
672408 AACTCCTA
1 AAC-CCTA
* *
672416 AATCTTA
1 AACCCTA
*
672423 AACCC-C
1 AACCCTA
672429 AACCCTTA
1 AACCC-TA
*
672437 AACCATA
1 AACCCTA
* *
672444 AATCATA
1 AACCCTA
*
672451 AAACCTA
1 AACCCTA
672458 AACCCATA
1 AACCC-TA
* *
672466 ATCCTTA
1 AACCCTA
*
672473 AACCTTA
1 AACCCTA
672480 AA
1 AA
672482 ATAGTATCTT
Statistics
Matches: 87, Mismatches: 21, Indels: 16
0.70 0.17 0.13
Matches are distributed among these distances:
6 11 0.13
7 56 0.64
8 20 0.23
ACGTcount: A:0.41, C:0.35, G:0.01, T:0.23
Consensus pattern (7 bp):
AACCCTA
Found at i:672445 original size:28 final size:29
Alignment explanation
Indices: 672392--672452 Score: 72
Period size: 28 Copynumber: 2.1 Consensus size: 29
672382 CCCTGAACCC
* * *
672392 TAAACCCCTAACTCTTAACTCCTAAATCT
1 TAAACCCCTAACCCTTAACTCATAAATCA
672421 TAAACCCC-AACCCTTAAAC-CATAAATCA
1 TAAACCCCTAACCCTT-AACTCATAAATCA
672449 TAAA
1 TAAA
672453 ACCTAAACCC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 17 0.61
29 11 0.39
ACGTcount: A:0.43, C:0.33, G:0.00, T:0.25
Consensus pattern (29 bp):
TAAACCCCTAACCCTTAACTCATAAATCA
Found at i:672520 original size:14 final size:14
Alignment explanation
Indices: 672500--672544 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
672490 TTTTAAACCT
672500 TAAACCCTAAACTA
1 TAAACCCTAAACTA
* * *
672514 TATACCCCAAACCA
1 TAAACCCTAAACTA
672528 TAAACCCTAAACTA
1 TAAACCCTAAACTA
672542 TAA
1 TAA
672545 TGATAATTAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.49, C:0.31, G:0.00, T:0.20
Consensus pattern (14 bp):
TAAACCCTAAACTA
Found at i:672674 original size:15 final size:15
Alignment explanation
Indices: 672662--672717 Score: 62
Period size: 15 Copynumber: 3.9 Consensus size: 15
672652 CCTCAATCCT
*
672662 TAAACCCTAAATCCC
1 TAAACCCTAAACCCC
*
672677 T-AACTCT-AACCCC
1 TAAACCCTAAACCCC
*
672690 TAAACCCTTAACCCC
1 TAAACCCTAAACCCC
*
672705 TAACCCCTAAACC
1 TAAACCCTAAACC
672718 TTAAATCCCA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
13 6 0.18
14 10 0.29
15 18 0.53
ACGTcount: A:0.36, C:0.45, G:0.00, T:0.20
Consensus pattern (15 bp):
TAAACCCTAAACCCC
Found at i:672697 original size:7 final size:7
Alignment explanation
Indices: 672627--672722 Score: 54
Period size: 7 Copynumber: 13.7 Consensus size: 7
672617 AATAATTAAT
672627 CTAAACC
1 CTAAACC
*
672634 CAAAACC
1 CTAAACC
672641 CT-AACC
1 CTAAACC
* *
672647 C-GACCC
1 CTAAACC
*
672653 CTCAATCC
1 CT-AAACC
*
672661 TTAAACC
1 CTAAACC
672668 CTAAATCC
1 CTAAA-CC
*
672676 CT-AACT
1 CTAAACC
*
672682 CTAACCC
1 CTAAACC
672689 CTAAACC
1 CTAAACC
*
672696 CTTAACCC
1 C-TAAACC
*
672704 CTAACCC
1 CTAAACC
672711 CTAAACC
1 CTAAACC
*
672718 TTAAA
1 CTAAA
672723 TCCCAGCCCT
Statistics
Matches: 68, Mismatches: 15, Indels: 12
0.72 0.16 0.13
Matches are distributed among these distances:
6 12 0.18
7 42 0.62
8 14 0.21
ACGTcount: A:0.36, C:0.44, G:0.01, T:0.19
Consensus pattern (7 bp):
CTAAACC
Found at i:685532 original size:31 final size:29
Alignment explanation
Indices: 685496--685554 Score: 73
Period size: 31 Copynumber: 2.0 Consensus size: 29
685486 TAGCAACAAT
685496 GAAAAAATAAAATCCAAAACCTAAGAGAAAG
1 GAAAAAATAAAATCCAAAA-CTAA-AGAAAG
* * *
685527 GAAAAACTAAATTCTAAAACTAAAGAAA
1 GAAAAAATAAAATCCAAAACTAAAGAAA
685555 AAATTATACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 5 0.20
30 4 0.16
31 16 0.64
ACGTcount: A:0.64, C:0.12, G:0.10, T:0.14
Consensus pattern (29 bp):
GAAAAAATAAAATCCAAAACTAAAGAAAG
Found at i:691464 original size:50 final size:50
Alignment explanation
Indices: 691410--691627 Score: 296
Period size: 50 Copynumber: 4.3 Consensus size: 50
691400 TTAATAAAGT
*
691410 CATGCATTATGTAACTTTCATGTTAGTTAAGTATGCATCATAAATAATGA
1 CATGCATTATGTAACTCTCATGTTAGTTAAGTATGCATCATAAATAATGA
* *
691460 CATGCATTATGTAACTTTCATGTTAGATAAGTATGCATCATAAATAATGA
1 CATGCATTATGTAACTCTCATGTTAGTTAAGTATGCATCATAAATAATGA
* *
691510 CATGCATTATGTAACTCTCATGTTAGTTAAG-ATTGCATCATAAATTATGT
1 CATGCATTATGTAACTCTCATGTTAGTTAAGTA-TGCATCATAAATAATGA
* * * * * *
691560 CATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATCTTTTAATAAAGT
1 CATGCATTATGTAACTCTCATGTTAGTT-AAGTATGCATC-ATAAATAATGA
691612 CATGCATTA-GTAACTC
1 CATGCATTATGTAACTC
691628 ATTTGTTCAT
Statistics
Matches: 153, Mismatches: 11, Indels: 7
0.89 0.06 0.04
Matches are distributed among these distances:
49 1 0.01
50 120 0.78
51 16 0.10
52 16 0.10
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (50 bp):
CATGCATTATGTAACTCTCATGTTAGTTAAGTATGCATCATAAATAATGA
Found at i:693654 original size:27 final size:27
Alignment explanation
Indices: 693580--693659 Score: 65
Period size: 26 Copynumber: 3.0 Consensus size: 27
693570 AAACCTTAGT
* * *
693580 TCGCCAAACAAACTAGTGAACCCCAAT
1 TCGCCAAATAAACTAGTGAACACCAAC
* * * ** *
693607 TC-ACAACTCAACTAGCAAACACCAGC
1 TCGCCAAATAAACTAGTGAACACCAAC
693633 TCGCCAAATAAACTAGTGAACA-CAAC
1 TCGCCAAATAAACTAGTGAACACCAAC
693659 T
1 T
693660 TTCAATGAAT
Statistics
Matches: 37, Mismatches: 15, Indels: 3
0.67 0.27 0.05
Matches are distributed among these distances:
26 21 0.57
27 16 0.43
ACGTcount: A:0.42, C:0.33, G:0.10, T:0.15
Consensus pattern (27 bp):
TCGCCAAATAAACTAGTGAACACCAAC
Found at i:695523 original size:12 final size:12
Alignment explanation
Indices: 695506--695532 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
695496 AATATGGTGT
695506 TTTGGTTTAAAA
1 TTTGGTTTAAAA
695518 TTTGGTTTAAAA
1 TTTGGTTTAAAA
695530 TTT
1 TTT
695533 CAAATAAACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.56
Consensus pattern (12 bp):
TTTGGTTTAAAA
Found at i:703428 original size:22 final size:21
Alignment explanation
Indices: 703403--703466 Score: 60
Period size: 20 Copynumber: 3.0 Consensus size: 21
703393 TTTTCCATTA
*
703403 TGGCATTCTGATCTCGCCTTTG
1 TGGCATTCTGAT-TAGCCTTTG
*
703425 TGGCACATTCT-ATTAGCTTTTG
1 TGG--CATTCTGATTAGCCTTTG
*
703447 TGGCATTCTG-CTAGCCTTTG
1 TGGCATTCTGATTAGCCTTTG
703467 AGGTGTGCTC
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
20 14 0.40
22 13 0.37
23 2 0.06
24 6 0.17
ACGTcount: A:0.12, C:0.23, G:0.22, T:0.42
Consensus pattern (21 bp):
TGGCATTCTGATTAGCCTTTG
Found at i:709037 original size:22 final size:22
Alignment explanation
Indices: 708998--709039 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
708988 GGGGTAGGAA
* *
708998 TTTGCATCTGTATCTGATATGT
1 TTTGCATCTGCATATGATATGT
*
709020 TTTGCATTTGCATATGATAT
1 TTTGCATCTGCATATGATAT
709040 TCTCTGTTTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.21, C:0.12, G:0.17, T:0.50
Consensus pattern (22 bp):
TTTGCATCTGCATATGATATGT
Found at i:716204 original size:14 final size:15
Alignment explanation
Indices: 716169--716208 Score: 55
Period size: 17 Copynumber: 2.6 Consensus size: 15
716159 CCTTTTTTTC
716169 TTTTTTGTTCTTCTGT
1 TTTTTTGTTCTTC-GT
716185 TCTTTTTGTTCTTC-T
1 T-TTTTTGTTCTTCGT
716200 TTTTTTGTT
1 TTTTTTGTT
716209 TGATTGCTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 8 0.35
15 2 0.09
16 1 0.04
17 12 0.52
ACGTcount: A:0.00, C:0.12, G:0.10, T:0.78
Consensus pattern (15 bp):
TTTTTTGTTCTTCGT
Found at i:720025 original size:41 final size:41
Alignment explanation
Indices: 719967--720098 Score: 185
Period size: 41 Copynumber: 3.2 Consensus size: 41
719957 ATAATATTGT
719967 TGAATTGCACATACATGCCCTTATTTGTACTTCGGTACCCC
1 TGAATTGCACATACATGCCCTTATTTGTACTTCGGTACCCC
* * * *
720008 TGAATTGCACATGCATGCCCCTATTTGTAATTCAGTACCCC
1 TGAATTGCACATACATGCCCTTATTTGTACTTCGGTACCCC
* * * *
720049 TGAATTGCACATACGTGTCCTTGTTTGTACTTCGGTACCCT
1 TGAATTGCACATACATGCCCTTATTTGTACTTCGGTACCCC
720090 TGAA-TGCAC
1 TGAATTGCAC
720099 TTTTTACCCC
Statistics
Matches: 79, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
40 5 0.06
41 74 0.94
ACGTcount: A:0.22, C:0.27, G:0.17, T:0.34
Consensus pattern (41 bp):
TGAATTGCACATACATGCCCTTATTTGTACTTCGGTACCCC
Found at i:720028 original size:21 final size:22
Alignment explanation
Indices: 720001--720060 Score: 63
Period size: 20 Copynumber: 2.9 Consensus size: 22
719991 TTGTACTTCG
720001 GTACCCCTGAATTGCACATGCA
1 GTACCCCTGAATTGCACATGCA
* * * *
720023 -TGCCCCT-ATTTGTA-ATTCA
1 GTACCCCTGAATTGCACATGCA
720042 GTACCCCTGAATTGCACAT
1 GTACCCCTGAATTGCACAT
720061 ACGTGTCCTT
Statistics
Matches: 28, Mismatches: 7, Indels: 6
0.68 0.17 0.15
Matches are distributed among these distances:
19 4 0.14
20 11 0.39
21 11 0.39
22 2 0.07
ACGTcount: A:0.25, C:0.30, G:0.15, T:0.30
Consensus pattern (22 bp):
GTACCCCTGAATTGCACATGCA
Found at i:724393 original size:20 final size:20
Alignment explanation
Indices: 724368--724405 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
724358 ATGTGAATAT
*
724368 TATATTTTGTTTAATAAAAG
1 TATATTTTATTTAATAAAAG
724388 TATATTTTATTTAATAAA
1 TATATTTTATTTAATAAA
724406 GATAAATTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (20 bp):
TATATTTTATTTAATAAAAG
Found at i:724658 original size:19 final size:19
Alignment explanation
Indices: 724636--724679 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
724626 AAAATTAGAT
*
724636 AAAATAAGGCGAATTATAA
1 AAAATAAGGCAAATTATAA
* *
724655 AAAATTAGGTAAATTATAA
1 AAAATAAGGCAAATTATAA
724674 AAAATA
1 AAAATA
724680 TTATTTTCAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.61, C:0.02, G:0.11, T:0.25
Consensus pattern (19 bp):
AAAATAAGGCAAATTATAA
Found at i:726392 original size:114 final size:111
Alignment explanation
Indices: 726046--726402 Score: 267
Period size: 114 Copynumber: 3.1 Consensus size: 111
726036 TTTGAAACCG
* * *
726046 AAACGTAACGTTTCGTCTTGAGCTATAGCGCCTTTAGTGGCGCTTAGCTGAAAACGCCGCTATAT
1 AAACGCAACGTTTCATCTTGAGCTATAGCGCCTTTAGTGGCGCTTA-CCGAAAACGCCGCTATAT
* * * * * *
726111 ATCAGCTTTTCGTGGCGCTATTCGTGAATCGCCGCAAATATTTTGAACA
65 ATCAGCTTTTAGTGGCGCT-TTC-TTAAACGCCGCAAAAAATTTGACCA
* * * ** * *
726160 AAACGCATCGTTCGCGT-TTGA-CGTATAAAGGCATTAGTGGCGCTTACCTGAAAACGCCGCTAT
1 AAACGCAACGTT-TCATCTTGAGC-TATAGCGCCTTTAGTGGCGCTTACC-GAAAACGCCGCTAT
** ** * *** * * *
726223 ATCCCA--TAAATAGTGTCG-TTTAAC-TAAAAAACGTTAAAAAATTTTAAACCG
63 ATATCAGCT-TTTAGTGGCGCTTT--CTTAAACGCCG-CAAAAAA-TTT-GACCA
*
726274 AAACGCAACGTTTCATCTTGAGCTATAGCGCCTTTAGTGGCGCTTACCCATAAACGCCGCTATAT
1 AAACGCAACGTTTCATCTTGAGCTATAGCGCCTTTAGTGGCGCTTACCGA-AAACGCCGCTATAT
*
726339 ATCAGCTTTTAGTGGCGCTTCTGCTTAAGCGCCGCAAAAAATTTGACCA
65 ATCAGCTTTTAGTGGCGCTT-T-CTTAAACGCCGCAAAAAATTTGACCA
*
726388 AAACGCATCGTTTCA
1 AAACGCAACGTTTCA
726403 GCTTCACGTA
Statistics
Matches: 179, Mismatches: 47, Indels: 34
0.69 0.18 0.13
Matches are distributed among these distances:
111 6 0.03
112 6 0.03
113 15 0.08
114 122 0.68
115 14 0.08
116 10 0.06
117 6 0.03
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (111 bp):
AAACGCAACGTTTCATCTTGAGCTATAGCGCCTTTAGTGGCGCTTACCGAAAACGCCGCTATATA
TCAGCTTTTAGTGGCGCTTTCTTAAACGCCGCAAAAAATTTGACCA
Found at i:726414 original size:228 final size:227
Alignment explanation
Indices: 726040--726451 Score: 571
Period size: 228 Copynumber: 1.8 Consensus size: 227
726030 GGAACCTTTG
* * **
726040 AAACCGAAACGTAACGTTTCGTCTTGAGCTATAGCGCCTTTAGTGGCGCTTAGCTGAAAACGCCG
1 AAACCGAAACGCAACGTTTCATCTTGAGCTATAGCGCCTTTAGTGGCGCTTAGCCCAAAACGCCG
* * * *
726105 CTATATATCAGCTTTTCGTGGCGCTATTCGTGAATCGCCGCAAATATTTTGAACAAAACGCATCG
66 CTATATATCAGCTTTTAGTGGCGCTATTCGTGAAGCGCCGCAAAAAATTTGAACAAAACGCATCG
* *
726170 TTCGCGTTTGACGTATAAAGGCATTAGTGGCGCTTACCTGAAAACGCCGCTATATCCCATAAATA
131 TTCGCG-TTCACGTATAAAGGCATTAGCGGCGCTTACCTGAAAACGCCGCTATATCCCATAAATA
726235 GTGTCGTTTAACTAAAAAACGTTAAAAAATTTT
195 GTGTCGTTTAACTAAAAAACGTTAAAAAATTTT
726268 AAACCGAAACGCAACGTTTCATCTTGAGCTATAGCGCCTTTAGTGGCGCTTA-CCCATAAACGCC
1 AAACCGAAACGCAACGTTTCATCTTGAGCTATAGCGCCTTTAGTGGCGCTTAGCCCA-AAACGCC
* *
726332 GCTATATATCAGCTTTTAGTGGCGC--TTCTGCTTAAGCGCCGCAAAAAATTTGACCAAAACGCA
65 GCTATATATCAGCTTTTAGTGGCGCTATTC-G-TGAAGCGCCGCAAAAAATTTGAACAAAACGCA
* ** ** * *
726395 TCGTTTCAGC-TTCACGTATAGATTCATTAGCGGCGCTTATTTGGAAACGCTGCTATA
128 TCG-TTC-GCGTTCACGTATAAAGGCATTAGCGGCGCTTACCTGAAAACGCCGCTATA
726452 GAGTAACTTT
Statistics
Matches: 160, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
226 3 0.02
227 3 0.02
228 149 0.93
229 3 0.02
230 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (227 bp):
AAACCGAAACGCAACGTTTCATCTTGAGCTATAGCGCCTTTAGTGGCGCTTAGCCCAAAACGCCG
CTATATATCAGCTTTTAGTGGCGCTATTCGTGAAGCGCCGCAAAAAATTTGAACAAAACGCATCG
TTCGCGTTCACGTATAAAGGCATTAGCGGCGCTTACCTGAAAACGCCGCTATATCCCATAAATAG
TGTCGTTTAACTAAAAAACGTTAAAAAATTTT
Found at i:726804 original size:13 final size:14
Alignment explanation
Indices: 726786--726826 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
726776 TTTCCAAAGA
726786 TATGGTTTAGGA-T
1 TATGGTTTAGGACT
*
726799 TATGGTTTATGACT
1 TATGGTTTAGGACT
*
726813 TACGGTTTA-GACT
1 TATGGTTTAGGACT
726826 T
1 T
726827 TAGGGGCTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 16 0.64
14 9 0.36
ACGTcount: A:0.22, C:0.07, G:0.24, T:0.46
Consensus pattern (14 bp):
TATGGTTTAGGACT
Found at i:727013 original size:7 final size:7
Alignment explanation
Indices: 727001--727070 Score: 59
Period size: 7 Copynumber: 10.0 Consensus size: 7
726991 GTTAATTGAC
727001 GGGTTTA
1 GGGTTTA
727008 GGGTTTA
1 GGGTTTA
* *
727015 AGTTTTA
1 GGGTTTA
* *
727022 CGGTTTG
1 GGGTTTA
*
727029 GGGTTTG
1 GGGTTTA
727036 GGGTTTA
1 GGGTTTA
*
727043 GGGTTAA
1 GGGTTTA
727050 GGGTTTA
1 GGGTTTA
** *
727057 TAGTTTG
1 GGGTTTA
727064 GGGTTTA
1 GGGTTTA
727071 AGATTTACAA
Statistics
Matches: 48, Mismatches: 15, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
7 48 1.00
ACGTcount: A:0.14, C:0.01, G:0.40, T:0.44
Consensus pattern (7 bp):
GGGTTTA
Found at i:741003 original size:43 final size:43
Alignment explanation
Indices: 740838--741110 Score: 270
Period size: 43 Copynumber: 6.3 Consensus size: 43
740828 GTTTGTGAAA
* * ***
740838 TAAGCGCCGCGAAAGAACACT-ACTTTTAGCGGCG-TTTGTAGA
1 TAAGCGCCGCTAAAGAACA-TGACTTTTAGCGGCGTTTTTTTCC
* * *
740880 TGAAGCGCCGCTAAAGAACATTACTTTTAGCGGCGTTTTCTACC
1 T-AAGCGCCGCTAAAGAACATGACTTTTAGCGGCGTTTTTTTCC
* * *
740924 -AAGCGCCGCTATAGAACATTACTTTTAGTGGCGTTTTTTTCC
1 TAAGCGCCGCTAAAGAACATGACTTTTAGCGGCGTTTTTTTCC
740966 TAAGCGCCGCTAAAGAACATGA-TCTTTAGCGGCG-TTTTTTCC
1 TAAGCGCCGCTAAAGAACATGACT-TTTAGCGGCGTTTTTTTCC
** * * *
741008 CGAGTGCTGCTAAAGAACATGA-TCATTAGCGGCGTTTTTTTCC
1 TAAGCGCCGCTAAAGAACATGACT-TTTAGCGGCGTTTTTTTCC
* * *
741051 TAAGCGCCGCTAAAGAACATGACATTTAGCGGCATTTTTTTTCTG
1 TAAGCGCCGCTAAAGAACATGACTTTTAGCGGC-GTTTTTTTC-C
*
741096 TAAGCGCCGCAAAAG
1 TAAGCGCCGCTAAAG
741111 TTAGCGACGT
Statistics
Matches: 197, Mismatches: 25, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
42 78 0.40
43 92 0.47
44 13 0.07
45 14 0.07
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (43 bp):
TAAGCGCCGCTAAAGAACATGACTTTTAGCGGCGTTTTTTTCC
Found at i:741089 original size:85 final size:84
Alignment explanation
Indices: 740839--741090 Score: 276
Period size: 85 Copynumber: 3.0 Consensus size: 84
740829 TTTGTGAAAT
* * * *** *
740839 AAGCGCCGCGAAAGAACACT-ACTTTTAGCGGCG-TTTGTAGATGAAGCGCCGCTAAAGAACATT
1 AAGCGCCGCTAAAGAACA-TGACTATTAGCGGCGTTTTTTTCCT-AAGCGCCGCTAAAGAACATG
*
740902 ACTTTTAGCGGCGTTTTCTACC
64 AC-TTTAGCGGCGTTTTTTACC
* * * *
740924 AAGCGCCGCTATAGAACATTACTTTTAGTGGCGTTTTTTTCCTAAGCGCCGCTAAAGAACATGAT
1 AAGCGCCGCTAAAGAACATGACTATTAGCGGCGTTTTTTTCCTAAGCGCCGCTAAAGAACATGA-
*
740989 CTTTAGCGGCGTTTTTTCCC
65 CTTTAGCGGCGTTTTTTACC
* * *
741009 GAGTGCTGCTAAAGAACATGA-TCATTAGCGGCGTTTTTTTCCTAAGCGCCGCTAAAGAACATGA
1 AAGCGCCGCTAAAGAACATGACT-ATTAGCGGCGTTTTTTTCCTAAGCGCCGCTAAAGAACATGA
*
741073 CATTTAGCGGCATTTTTT
65 C-TTTAGCGGCGTTTTTT
741091 TTCTGTAAGC
Statistics
Matches: 144, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
84 3 0.02
85 135 0.94
86 6 0.04
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (84 bp):
AAGCGCCGCTAAAGAACATGACTATTAGCGGCGTTTTTTTCCTAAGCGCCGCTAAAGAACATGAC
TTTAGCGGCGTTTTTTACC
Found at i:745643 original size:23 final size:24
Alignment explanation
Indices: 745607--745655 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 24
745597 TTATGCCTTA
*
745607 TTTTTAAATCAATGGAAGTAATTC
1 TTTTTAAATCAATGCAAGTAATTC
* *
745631 TTTTTATAT-AATGCAAGTGATTC
1 TTTTTAAATCAATGCAAGTAATTC
745654 TT
1 TT
745656 AAACATAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 14 0.64
24 8 0.36
ACGTcount: A:0.33, C:0.08, G:0.12, T:0.47
Consensus pattern (24 bp):
TTTTTAAATCAATGCAAGTAATTC
Found at i:745994 original size:105 final size:105
Alignment explanation
Indices: 745727--746043 Score: 528
Period size: 105 Copynumber: 3.0 Consensus size: 105
745717 ATCATCTATG
* * * *
745727 GTCCCTTCCCAATTATTTAATTAAATTTCAGCAAATTTTTTCATGTTATTGATACATAATTTTGG
1 GTCCCTTTCCAATTATTTAATTATATTTCAGCAAATTTTTTCATATTATTGATACACAATTTTGG
*
745792 TAATTTTTTACCCTC-AACCCTAAACTTGTTCAAGGTTCAA
66 TAATTTTTTACCC-CGAACCCTAAACTCGTTCAAGGTTCAA
745832 GTCCCCTTTCCAATTATTTAATTATATTTCAGCAAATTTTTTCATATTATTGATACACAATTTTG
1 GT-CCCTTTCCAATTATTTAATTATATTTCAGCAAATTTTTTCATATTATTGATACACAATTTTG
* * *
745897 GTAATTTTCTACCCCGAACCCTAAACTCATTCAAAGTTCAA
65 GTAATTTTTTACCCCGAACCCTAAACTCGTTCAAGGTTCAA
*
745938 GTCCCTTTCCAATTATTTAATTATATTTCAGCAATTTTTTTCATATTATTGATACACAATTTTGG
1 GTCCCTTTCCAATTATTTAATTATATTTCAGCAAATTTTTTCATATTATTGATACACAATTTTGG
746003 TAATTTTTTACCCCGAACCCTAAACTCGTTCAAGGTTCAA
66 TAATTTTTTACCCCGAACCCTAAACTCGTTCAAGGTTCAA
746043 G
1 G
746044 GTTTAAGGTT
Statistics
Matches: 198, Mismatches: 12, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
105 103 0.52
106 95 0.48
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.42
Consensus pattern (105 bp):
GTCCCTTTCCAATTATTTAATTATATTTCAGCAAATTTTTTCATATTATTGATACACAATTTTGG
TAATTTTTTACCCCGAACCCTAAACTCGTTCAAGGTTCAA
Found at i:746427 original size:20 final size:20
Alignment explanation
Indices: 746402--746450 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 20
746392 TGTTTATAAA
746402 TTAAAATATATTTAAT-AA-TT
1 TTAAAAT-T-TTTAATGAAGTT
746422 TTAAAATTTTTAATGAAGTTT
1 TTAAAATTTTTAATGAAG-TT
746443 TTAAAATT
1 TTAAAATT
746451 CCTTAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
18 6 0.23
19 3 0.12
20 7 0.27
21 10 0.38
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (20 bp):
TTAAAATTTTTAATGAAGTT
Found at i:747583 original size:19 final size:20
Alignment explanation
Indices: 747559--747645 Score: 90
Period size: 19 Copynumber: 4.2 Consensus size: 20
747549 TCTTTAGAAT
747559 TTTTTAAAAATTATTTT-AA
1 TTTTTAAAAATTATTTTGAA
747578 TTTTTAAAAAATATAATTTTTGGAA
1 TTTTT-AAAAAT-T-A-TTTT-GAA
*
747603 TTTTTATAAA-TATTTTGAA
1 TTTTTAAAAATTATTTTGAA
*
747622 TTTTAAAAAATTA-TTTGAA
1 TTTTTAAAAATTATTTTGAA
747641 TTTTT
1 TTTTT
747646 TTTTATTTTC
Statistics
Matches: 57, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
19 26 0.46
20 12 0.21
21 2 0.04
22 2 0.04
23 4 0.07
24 4 0.07
25 7 0.12
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (20 bp):
TTTTTAAAAATTATTTTGAA
Found at i:748831 original size:348 final size:349
Alignment explanation
Indices: 748185--748881 Score: 1387
Period size: 348 Copynumber: 2.0 Consensus size: 349
748175 TAAAGTTTAT
748185 ATAAATAATTTAAAAATAAATAGTAATCTTTTCCTTTAATCAATATTTTGTCTCATTGGGTTTTC
1 ATAAATAATTTAAAAATAAATAGTAATCTTTTCCTTTAATCAATATTTTGTCTCATTGGGTTTTC
748250 TTGGTAAAAGTTTATAACAAGGTAGTTTATAATATAAAATTGTGTACTCTTTTTCTTTCATTAGG
66 TTGGTAAAAGTTTATAACAAGGTAGTTTATAATATAAAATTGTGTACTCTTTTTCTTTCATTAGG
748315 TTTTATCCCATAGGGTTTTTCCTACTAAGGTTTTAACGAGGTACATTAAAATAAGTTTTGATGTA
131 TTTTATCCCATAGGGTTTTTCCTACTAAGGTTTTAACGAGGTACATTAAAATAAGTTTTGATGTA
748380 CTTTAAATTTTAATAGTCATTAGAAGTAGATCTTTACTTCATTTATACTTCTTATGCTTATAAAT
196 CTTTAAATTTTAATAGTCATTAGAAGTAGATCTTTACTTCATTTATACTTCTTATGCTTATAAAT
748445 AGAGATTTTGGAGAAATATTGTAAACATCCCATGATCAATAAAATGCATTCTCTATTGCTTCCCA
261 AGAGATTTTGGAGAAATATTGTAAACATCCCATGATCAATAAAATGCATTCTCTATTGCTTCCCA
748510 TATTTTCTTTGTTCTTTACTCTCC
326 TATTTTCTTTGTTCTTTACTCTCC
748534 ATAAATAA-TTAAAAATAAATAGTAATCTTTTCCTTTAATCAATATTTTGTCTCATTGGGTTTTC
1 ATAAATAATTTAAAAATAAATAGTAATCTTTTCCTTTAATCAATATTTTGTCTCATTGGGTTTTC
748598 TTGGTAAAAGTTTATAACAAGGTAGTTTATAATATAAAATTGTGTACTCTTTTTCTTTCATTAGG
66 TTGGTAAAAGTTTATAACAAGGTAGTTTATAATATAAAATTGTGTACTCTTTTTCTTTCATTAGG
748663 TTTTATCCCATAGGGTTTTTCCTACTAAGGTTTTAACGAGGTACATTAAAATAAGTTTTGATGTA
131 TTTTATCCCATAGGGTTTTTCCTACTAAGGTTTTAACGAGGTACATTAAAATAAGTTTTGATGTA
748728 CTTTAAATTTTAATAGTCATTAGAAGTAGATCTTTACTTCATTTATACTTCTTATGCTTATAAAT
196 CTTTAAATTTTAATAGTCATTAGAAGTAGATCTTTACTTCATTTATACTTCTTATGCTTATAAAT
748793 AGAGATTTTGGAGAAATATTGTAAACATCCCATGATCAATAAAATGCATTCTCTATTGCTTCCCA
261 AGAGATTTTGGAGAAATATTGTAAACATCCCATGATCAATAAAATGCATTCTCTATTGCTTCCCA
748858 TATTTTCTTTGTTCTTTACTCTCC
326 TATTTTCTTTGTTCTTTACTCTCC
748882 TTATCGCTTT
Statistics
Matches: 348, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
348 340 0.98
349 8 0.02
ACGTcount: A:0.31, C:0.13, G:0.12, T:0.44
Consensus pattern (349 bp):
ATAAATAATTTAAAAATAAATAGTAATCTTTTCCTTTAATCAATATTTTGTCTCATTGGGTTTTC
TTGGTAAAAGTTTATAACAAGGTAGTTTATAATATAAAATTGTGTACTCTTTTTCTTTCATTAGG
TTTTATCCCATAGGGTTTTTCCTACTAAGGTTTTAACGAGGTACATTAAAATAAGTTTTGATGTA
CTTTAAATTTTAATAGTCATTAGAAGTAGATCTTTACTTCATTTATACTTCTTATGCTTATAAAT
AGAGATTTTGGAGAAATATTGTAAACATCCCATGATCAATAAAATGCATTCTCTATTGCTTCCCA
TATTTTCTTTGTTCTTTACTCTCC
Found at i:749163 original size:19 final size:19
Alignment explanation
Indices: 749139--749186 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
749129 ATGTGTAAAT
*
749139 TTTTTTATATTT-GTTCTAA
1 TTTTTTATATTTAATT-TAA
*
749158 TTTTTTA-ATTTAATTTAT
1 TTTTTTATATTTAATTTAA
749176 TTTTTTATATT
1 TTTTTTATATT
749187 GAGTTTATTC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 13 0.52
19 12 0.48
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.73
Consensus pattern (19 bp):
TTTTTTATATTTAATTTAA
Found at i:749193 original size:19 final size:18
Alignment explanation
Indices: 749137--749195 Score: 57
Period size: 19 Copynumber: 3.2 Consensus size: 18
749127 CAATGTGTAA
*
749137 ATTTTTTTATATTTGTTCT
1 ATTTTTTTATATTAGTT-T
* *
749156 AATTTTTTA-ATTTAATTT
1 ATTTTTTTATA-TTAGTTT
749174 ATTTTTTTATATTGAGTTT
1 ATTTTTTTATATT-AGTTT
749193 ATT
1 ATT
749196 CAAGTTTTGG
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
18 12 0.38
19 20 0.62
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.69
Consensus pattern (18 bp):
ATTTTTTTATATTAGTTT
Found at i:749997 original size:43 final size:43
Alignment explanation
Indices: 749801--750136 Score: 235
Period size: 42 Copynumber: 7.9 Consensus size: 43
749791 TATAGACTAT
* **
749801 AAACGTCGCTAAA-AGTCATGACCTTTAGCGGCGCTTCCACAA-
1 AAACGCCGCTAAAGA-TCATGATTTTTAGCGGCGCTTCCACAAC
* * * * *
749843 AAATGCCACTAAAGGTCATG-TTCTTTAGCCGCGCTTACACAA-
1 AAACGCCGCTAAAGATCATGATT-TTTAGCGGCGCTTCCACAAC
* *
749885 AAACGTCGTTAAAGATCATG-TTCTTTAGCGGCGCTTCCACAA-
1 AAACGCCGCTAAAGATCATGATT-TTTAGCGGCGCTTCCACAAC
* * *
749927 AAACGCCGCTAAAGGTAAT-ATTCTTTAGCGGCGCTTCCCCAAC
1 AAACGCCGCTAAAGATCATGATT-TTTAGCGGCGCTTCCACAAC
* * * * ***
749970 GAACGCCGCTAAAGGTCATGAATTTTAG-TGCAGCTCTTTTC-AC
1 AAACGCCGCTAAAGATCATGATTTTTAGCGGC-GCT-TCCACAAC
* *
750013 AAACGCCGCTAAAGAACATGACTTTTTAGCGGCGCTTCTC-CTAC
1 AAACGCCGCTAAAGATCATGA-TTTTTAGCGGCGCTTC-CACAAC
* * * * *
750057 AAATGCCGCTAAAGAACATGAATTTTAGCGGCACTTCTC-CTAC
1 AAACGCCGCTAAAGATCATGATTTTTAGCGGCGCTTC-CACAAC
* * * *
750100 AAACGCCGCTATAGAACATGACTTTTAGCGTCGCTTC
1 AAACGCCGCTAAAGATCATGATTTTTAGCGGCGCTTC
750137 TTCCACAAGC
Statistics
Matches: 241, Mismatches: 42, Indels: 21
0.79 0.14 0.07
Matches are distributed among these distances:
42 105 0.44
43 99 0.41
44 35 0.15
45 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTAAAGATCATGATTTTTAGCGGCGCTTCCACAAC
Found at i:750065 original size:87 final size:86
Alignment explanation
Indices: 749950--750137 Score: 236
Period size: 87 Copynumber: 2.2 Consensus size: 86
749940 GGTAATATTC
* * ** * **
749950 TTTAGCGGCGCTTCCCCAACGAACGCCGCTAAAGGTCATGAATTTTAG-TGCAGC-TCTTTTCAC
1 TTTAGCGGCGCTTCTCCAACAAACGCCGCTAAAGAACATGAATTTTAGCGGCA-CTTCTCCT-AC
750013 AAACGCCGCTAAAGAACATGACTT
64 AAACGCCGCTAAAGAACATGAC-T
* *
750037 TTTAGCGGCGCTTCTCCTACAAATGCCGCTAAAGAACATGAATTTTAGCGGCACTTCTCCTACAA
1 TTTAGCGGCGCTTCTCCAACAAACGCCGCTAAAGAACATGAATTTTAGCGGCACTTCTCCTACAA
*
750102 ACGCCGCTATAGAACATGACT
66 ACGCCGCTAAAGAACATGACT
*
750123 TTTAGCGTCGCTTCT
1 TTTAGCGGCGCTTCT
750138 TCCACAAGCA
Statistics
Matches: 88, Mismatches: 11, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
86 15 0.17
87 66 0.75
88 7 0.08
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.27
Consensus pattern (86 bp):
TTTAGCGGCGCTTCTCCAACAAACGCCGCTAAAGAACATGAATTTTAGCGGCACTTCTCCTACAA
ACGCCGCTAAAGAACATGACT
Found at i:750154 original size:43 final size:43
Alignment explanation
Indices: 749908--750137 Score: 211
Period size: 43 Copynumber: 5.3 Consensus size: 43
749898 GATCATGTTC
* * *
749908 TTTAGCGGCGCTTC-CAC-AAAAACGCCGCTAAAGGTA-AT-ATT
1 TTTAGCGGCGCTTCTC-CTACAAACGCCGCTAAA-GAACATGACT
* * * ** *
749949 CTTTAGCGGCGCTTCCCCAACGAACGCCGCTAAAGGTCATGAAT
1 -TTTAGCGGCGCTTCTCCTACAAACGCCGCTAAAGAACATGACT
* **
749993 TTTAG-TGCAGC-TCTTTTCACAAACGCCGCTAAAGAACATGACTT
1 TTTAGCGGC-GCTTCTCCT-ACAAACGCCGCTAAAGAACATGAC-T
* *
750037 TTTAGCGGCGCTTCTCCTACAAATGCCGCTAAAGAACATGAAT
1 TTTAGCGGCGCTTCTCCTACAAACGCCGCTAAAGAACATGACT
* *
750080 TTTAGCGGCACTTCTCCTACAAACGCCGCTATAGAACATGACT
1 TTTAGCGGCGCTTCTCCTACAAACGCCGCTAAAGAACATGACT
*
750123 TTTAGCGTCGCTTCT
1 TTTAGCGGCGCTTCT
750138 TCCACAAGCA
Statistics
Matches: 154, Mismatches: 25, Indels: 17
0.79 0.13 0.09
Matches are distributed among these distances:
42 20 0.13
43 96 0.62
44 32 0.21
45 6 0.04
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (43 bp):
TTTAGCGGCGCTTCTCCTACAAACGCCGCTAAAGAACATGACT
Found at i:750444 original size:43 final size:43
Alignment explanation
Indices: 750397--750481 Score: 170
Period size: 43 Copynumber: 2.0 Consensus size: 43
750387 GTTAAAATGA
750397 TAAAAATATTTATACAATACACTATGACGGCGGAAGTTGCGAT
1 TAAAAATATTTATACAATACACTATGACGGCGGAAGTTGCGAT
750440 TAAAAATATTTATACAATACACTATGACGGCGGAAGTTGCGA
1 TAAAAATATTTATACAATACACTATGACGGCGGAAGTTGCGA
750482 CTGCTGAAAC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.27
Consensus pattern (43 bp):
TAAAAATATTTATACAATACACTATGACGGCGGAAGTTGCGAT
Found at i:750678 original size:21 final size:21
Alignment explanation
Indices: 750631--750681 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
750621 TTCTTTTGAA
* *
750631 CCTCTACTTCTCTCGCTGCAG
1 CCTCTGCTTCCCTCGCTGCAG
*
750652 CCTCTGCTTCCCTCGCTGCCG
1 CCTCTGCTTCCCTCGCTGCAG
750673 CCTCTGCTT
1 CCTCTGCTT
750682 TAAGTTGTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.04, C:0.47, G:0.16, T:0.33
Consensus pattern (21 bp):
CCTCTGCTTCCCTCGCTGCAG
Found at i:750679 original size:87 final size:88
Alignment explanation
Indices: 750545--750714 Score: 261
Period size: 87 Copynumber: 1.9 Consensus size: 88
750535 TTCTACTCTG
* * * *
750545 CTCTGCTTCCCTCGCTGCAGCCTCTACTTCTCTCGATGTCGCATCTGCTTTAAGTTGTTGCTGGA
1 CTCTACTTCCCTCGCTGCAGCCTCTACTTCCCTCGATGCCGCATCTGCTTTAAGTTGTAGCTGGA
750610 GTTCTTCATA-TTTCTTTTGAAC
66 GTTCTTCATATTTTCTTTTGAAC
* * * *
750632 CTCTACTTCTCTCGCTGCAGCCTCTGCTTCCCTCGCTGCCGCCTCTGCTTTAAGTTGTAGCTGGA
1 CTCTACTTCCCTCGCTGCAGCCTCTACTTCCCTCGATGCCGCATCTGCTTTAAGTTGTAGCTGGA
750697 GTTCTTCATATTTTCTTT
66 GTTCTTCATATTTTCTTT
750715 GGACCTCAAC
Statistics
Matches: 74, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
87 67 0.91
88 7 0.09
ACGTcount: A:0.11, C:0.31, G:0.17, T:0.41
Consensus pattern (88 bp):
CTCTACTTCCCTCGCTGCAGCCTCTACTTCCCTCGATGCCGCATCTGCTTTAAGTTGTAGCTGGA
GTTCTTCATATTTTCTTTTGAAC
Found at i:754440 original size:20 final size:21
Alignment explanation
Indices: 754403--754441 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
754393 AATTCTTCTT
754403 TTATATGTTATGTTTAACTCG
1 TTATATGTTATGTTTAACTCG
754424 TTATATGTTAT-TTTAACT
1 TTATATGTTATGTTTAACT
754442 TACTTTGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.26, C:0.08, G:0.10, T:0.56
Consensus pattern (21 bp):
TTATATGTTATGTTTAACTCG
Found at i:755749 original size:15 final size:15
Alignment explanation
Indices: 755731--755760 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
755721 TTAAATAATA
*
755731 ATTTATATTTATATT
1 ATTTACATTTATATT
755746 ATTTACATTTATATT
1 ATTTACATTTATATT
755761 CTAAAATATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTTACATTTATATT
Found at i:755904 original size:21 final size:21
Alignment explanation
Indices: 755880--755940 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
755870 ACTGTAATCG
*
755880 TAAATCTTAAACCCTAAACTA
1 TAAACCTTAAACCCTAAACTA
* * *
755901 TAAACCCTAAACCCCAAACTG
1 TAAACCTTAAACCCTAAACTA
*
755922 TAAACCTTAAACTCTAAAC
1 TAAACCTTAAACCCTAAAC
755941 CCGTCAATTA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.46, C:0.30, G:0.02, T:0.23
Consensus pattern (21 bp):
TAAACCTTAAACCCTAAACTA
Found at i:756037 original size:21 final size:21
Alignment explanation
Indices: 756013--756088 Score: 68
Period size: 21 Copynumber: 3.6 Consensus size: 21
756003 ACCGAAAATC
756013 TTAAACCCTAAACCATAAACA
1 TTAAACCCTAAACCATAAACA
*
756034 TTAAACCCGTAAACCACAAACA
1 TTAAACCC-TAAACCATAAACA
* *
756056 --ACAACCACCAAATCATAAAC-
1 TTA-AACC-CTAAACCATAAACA
756076 TCTAAACCCTAAA
1 T-TAAACCCTAAA
756089 ANNNNNNNNN
Statistics
Matches: 44, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
20 1 0.02
21 25 0.57
22 17 0.39
23 1 0.02
ACGTcount: A:0.51, C:0.32, G:0.01, T:0.16
Consensus pattern (21 bp):
TTAAACCCTAAACCATAAACA
Found at i:756049 original size:22 final size:21
Alignment explanation
Indices: 756013--756055 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
756003 ACCGAAAATC
*
756013 TTAAACCCTAAACCATAAACA
1 TTAAACCCTAAACCACAAACA
756034 TTAAACCCGTAAACCACAAACA
1 TTAAACCC-TAAACCACAAACA
756056 ACAACCACCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.51, C:0.30, G:0.02, T:0.16
Consensus pattern (21 bp):
TTAAACCCTAAACCACAAACA
Found at i:757262 original size:15 final size:15
Alignment explanation
Indices: 757244--757273 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
757234 TTAAATAATA
*
757244 ATTTATATTTATATT
1 ATTTACATTTATATT
757259 ATTTACATTTATATT
1 ATTTACATTTATATT
757274 CTAAAATATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTTACATTTATATT
Found at i:757417 original size:21 final size:21
Alignment explanation
Indices: 757393--757453 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
757383 ACTGTAATCG
*
757393 TAAATCTTAAACCCTAAACTA
1 TAAACCTTAAACCCTAAACTA
* * *
757414 TAAACCCTAAACCCCAAACTG
1 TAAACCTTAAACCCTAAACTA
*
757435 TAAACCTTAAACTCTAAAC
1 TAAACCTTAAACCCTAAAC
757454 CCGTCAATTA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.46, C:0.30, G:0.02, T:0.23
Consensus pattern (21 bp):
TAAACCTTAAACCCTAAACTA
Found at i:757550 original size:21 final size:21
Alignment explanation
Indices: 757526--757601 Score: 68
Period size: 21 Copynumber: 3.6 Consensus size: 21
757516 ACCGAAAATC
757526 TTAAACCCTAAACCATAAACA
1 TTAAACCCTAAACCATAAACA
*
757547 TTAAACCCGTAAACCACAAACA
1 TTAAACCC-TAAACCATAAACA
* *
757569 --ACAACCACCAAATCATAAAC-
1 TTA-AACC-CTAAACCATAAACA
757589 TCTAAACCCTAAA
1 T-TAAACCCTAAA
757602 ACTGGCCAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
20 1 0.02
21 25 0.57
22 17 0.39
23 1 0.02
ACGTcount: A:0.51, C:0.32, G:0.01, T:0.16
Consensus pattern (21 bp):
TTAAACCCTAAACCATAAACA
Found at i:757562 original size:22 final size:21
Alignment explanation
Indices: 757526--757568 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
757516 ACCGAAAATC
*
757526 TTAAACCCTAAACCATAAACA
1 TTAAACCCTAAACCACAAACA
757547 TTAAACCCGTAAACCACAAACA
1 TTAAACCC-TAAACCACAAACA
757569 ACAACCACCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.51, C:0.30, G:0.02, T:0.16
Consensus pattern (21 bp):
TTAAACCCTAAACCACAAACA
Found at i:758136 original size:22 final size:22
Alignment explanation
Indices: 758111--758155 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
758101 AATAAGATAT
758111 TTTAGTAAAATT-AAAAATCTTA
1 TTTA-TAAAATTGAAAAATCTTA
* *
758133 TTTATAAATTTGATAAATCTTA
1 TTTATAAAATTGAAAAATCTTA
758155 T
1 T
758156 AAATAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.47
Consensus pattern (22 bp):
TTTATAAAATTGAAAAATCTTA
Found at i:763408 original size:11 final size:11
Alignment explanation
Indices: 763394--763418 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
763384 TCCATTTGAG
763394 TTTTTGTTTGC
1 TTTTTGTTTGC
763405 TTTTTGTTTGC
1 TTTTTGTTTGC
763416 TTT
1 TTT
763419 ATTAGTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.16, T:0.76
Consensus pattern (11 bp):
TTTTTGTTTGC
Found at i:766334 original size:27 final size:26
Alignment explanation
Indices: 766271--766334 Score: 65
Period size: 27 Copynumber: 2.4 Consensus size: 26
766261 AAAAATATTG
*
766271 TAAATATATACAAATTATACAAATGA
1 TAAATATATTCAAATTATACAAATGA
* * * *
766297 CATACTTTATTCAAATTATACAATTGA
1 TA-AATATATTCAAATTATACAAATGA
766324 TTAAATATATT
1 -TAAATATATT
766335 AATTAATACA
Statistics
Matches: 28, Mismatches: 8, Indels: 3
0.72 0.21 0.08
Matches are distributed among these distances:
26 1 0.04
27 26 0.93
28 1 0.04
ACGTcount: A:0.48, C:0.09, G:0.03, T:0.39
Consensus pattern (26 bp):
TAAATATATTCAAATTATACAAATGA
Found at i:766468 original size:23 final size:21
Alignment explanation
Indices: 766432--766497 Score: 78
Period size: 23 Copynumber: 3.0 Consensus size: 21
766422 ACAGAAATTC
* *
766432 AAATGAAGTAAAAAGTGAAATG
1 AAATGAAATTAAAA-TGAAATG
766454 AAAATGAAATTAAAATTGGAAATG
1 -AAATGAAATTAAAA-T-GAAATG
766478 AAATGAAATTAAAATGAAAT
1 AAATGAAATTAAAATGAAAT
766498 TATATTTAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
21 5 0.13
22 1 0.03
23 27 0.69
24 6 0.15
ACGTcount: A:0.61, C:0.00, G:0.17, T:0.23
Consensus pattern (21 bp):
AAATGAAATTAAAATGAAATG
Found at i:766498 original size:11 final size:11
Alignment explanation
Indices: 766425--766499 Score: 71
Period size: 11 Copynumber: 6.6 Consensus size: 11
766415 TAATTCAACA
*
766425 GAAATTCAAAT
1 GAAATTAAAAT
* *
766436 GAAGTAAAAAGT
1 GAAATTAAAA-T
*
766448 GAAATGAAAAT
1 GAAATTAAAAT
766459 GAAATTAAAATT
1 GAAATTAAAA-T
*
766471 GGAAA-TGAAAT
1 -GAAATTAAAAT
766482 GAAATTAAAAT
1 GAAATTAAAAT
766493 GAAATTA
1 GAAATTA
766500 TATTTAAAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
10 4 0.08
11 30 0.58
12 14 0.27
13 4 0.08
ACGTcount: A:0.59, C:0.01, G:0.16, T:0.24
Consensus pattern (11 bp):
GAAATTAAAAT
Found at i:766581 original size:22 final size:22
Alignment explanation
Indices: 766551--766619 Score: 86
Period size: 22 Copynumber: 3.1 Consensus size: 22
766541 GCACGTTTTT
*
766551 ATTGAAATGAAATGAAATTAAA
1 ATTGGAATGAAATGAAATTAAA
*
766573 ATTGGAATGAAATGAAATTCAA
1 ATTGGAATGAAATGAAATTAAA
*
766595 ATT-GAATAGAAATTGAAATGAAA
1 ATTGGAAT-GAAA-TGAAATTAAA
766618 AT
1 AT
766620 ATAATTAAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
21 4 0.10
22 27 0.66
23 10 0.24
ACGTcount: A:0.55, C:0.01, G:0.16, T:0.28
Consensus pattern (22 bp):
ATTGGAATGAAATGAAATTAAA
Found at i:766585 original size:11 final size:11
Alignment explanation
Indices: 766551--766617 Score: 59
Period size: 11 Copynumber: 6.1 Consensus size: 11
766541 GCACGTTTTT
766551 ATTGAAATGAA
1 ATTGAAATGAA
*
766562 A-TGAAATTAAA
1 ATTGAAA-TGAA
*
766573 ATTGGAATGAA
1 ATTGAAATGAA
*
766584 A-TGAAATTCAA
1 ATTGAAA-TGAA
766595 ATTG-AATAGAA
1 ATTGAAAT-GAA
766606 ATTGAAATGAA
1 ATTGAAATGAA
766617 A
1 A
766618 ATATAATTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
10 10 0.23
11 25 0.57
12 9 0.20
ACGTcount: A:0.55, C:0.01, G:0.16, T:0.27
Consensus pattern (11 bp):
ATTGAAATGAA
Found at i:766600 original size:17 final size:17
Alignment explanation
Indices: 766560--766617 Score: 50
Period size: 17 Copynumber: 3.5 Consensus size: 17
766550 TATTGAAATG
*
766560 AAATGAAATTA-AAATTG
1 AAATGAAA-TAGAAATTC
*
766577 GAATGAAAT-GAAATTC
1 AAATGAAATAGAAATTC
*
766593 AAATTG-AATAGAAATTG
1 AAA-TGAAATAGAAATTC
766610 AAATGAAA
1 AAATGAAA
766618 ATATAATTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
16 13 0.39
17 20 0.61
ACGTcount: A:0.57, C:0.02, G:0.16, T:0.26
Consensus pattern (17 bp):
AAATGAAATAGAAATTC
Found at i:767323 original size:35 final size:37
Alignment explanation
Indices: 767284--767358 Score: 95
Period size: 35 Copynumber: 2.1 Consensus size: 37
767274 AACTTTGATT
* * *
767284 TGAAAAATTTTAAA-GAG-AAAAAAATTTAACTTAAA
1 TGAAAAATTTAAAATGAGAAAAAAAATTTAAATAAAA
767319 TG--AAATTTAAAATGAGAAAAAAAATTTAAATAAAA
1 TGAAAAATTTAAAATGAGAAAAAAAATTTAAATAAAA
767354 TGAAA
1 TGAAA
767359 TTTAATTGAA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
33 9 0.27
34 3 0.09
35 20 0.61
37 1 0.03
ACGTcount: A:0.63, C:0.01, G:0.09, T:0.27
Consensus pattern (37 bp):
TGAAAAATTTAAAATGAGAAAAAAAATTTAAATAAAA
Found at i:767359 original size:35 final size:34
Alignment explanation
Indices: 767292--767386 Score: 113
Period size: 35 Copynumber: 2.7 Consensus size: 34
767282 TTTGAAAAAT
* *
767292 TTTAAA-GAG-AAAAAAATTTAACTTAAATGAAA
1 TTTAAATGAGAAAAAAAATTTAAATAAAATGAAA
767324 TTTAAAATGAGAAAAAAAATTTAAATAAAATGAAA
1 TTT-AAATGAGAAAAAAAATTTAAATAAAATGAAA
*
767359 TTTAATTGAAGAAGAAAAAATTTGAAAT
1 TTTAAATG-AGAA-AAAAAATTT-AAAT
767387 TCAAATAAAA
Statistics
Matches: 54, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
32 3 0.06
33 3 0.06
34 7 0.13
35 28 0.52
36 9 0.17
37 4 0.07
ACGTcount: A:0.60, C:0.01, G:0.11, T:0.28
Consensus pattern (34 bp):
TTTAAATGAGAAAAAAAATTTAAATAAAATGAAA
Found at i:767361 original size:16 final size:16
Alignment explanation
Indices: 767305--767363 Score: 55
Period size: 16 Copynumber: 3.5 Consensus size: 16
767295 AAAGAGAAAA
* *
767305 AAATTTAACTTAAATG
1 AAATTTAAATAAAATG
**
767321 AAATTTAAAATGAGAAAAA
1 AAATTT-AAAT-A-AAATG
767340 AAATTTAAATAAAATG
1 AAATTTAAATAAAATG
767356 AAATTTAA
1 AAATTTAA
767364 TTGAAGAAGA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
16 17 0.50
17 4 0.12
18 4 0.12
19 9 0.26
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.31
Consensus pattern (16 bp):
AAATTTAAATAAAATG
Found at i:767525 original size:39 final size:39
Alignment explanation
Indices: 767482--767556 Score: 116
Period size: 39 Copynumber: 1.9 Consensus size: 39
767472 AGTTTTAACT
* *
767482 AAAAAAAGTGAA-ATTGAAATAAAATTGAAATGAAATTAG
1 AAAAAAAATGAATA-TGAAAAAAAATTGAAATGAAATTAG
767521 AAAAAAAATGAATATGAAAAAAAATTGAAATGAAAT
1 AAAAAAAATGAATATGAAAAAAAATTGAAATGAAAT
767557 GAATTGTGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
39 32 0.97
40 1 0.03
ACGTcount: A:0.65, C:0.00, G:0.13, T:0.21
Consensus pattern (39 bp):
AAAAAAAATGAATATGAAAAAAAATTGAAATGAAATTAG
Found at i:767529 original size:17 final size:18
Alignment explanation
Indices: 767509--767551 Score: 56
Period size: 16 Copynumber: 2.5 Consensus size: 18
767499 AATAAAATTG
767509 AAATGAAATTA-GAAAAA
1 AAATGAAATTATGAAAAA
767526 AAATG-AA-TATGAAAAA
1 AAATGAAATTATGAAAAA
767542 AAATTGAAAT
1 AAA-TGAAAT
767552 GAAATGAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 2 0.09
16 11 0.50
17 7 0.32
18 2 0.09
ACGTcount: A:0.67, C:0.00, G:0.12, T:0.21
Consensus pattern (18 bp):
AAATGAAATTATGAAAAA
Found at i:767544 original size:56 final size:56
Alignment explanation
Indices: 767482--767600 Score: 161
Period size: 56 Copynumber: 2.1 Consensus size: 56
767472 AGTTTTAACT
767482 AAAAAAAGTGAAATTGAAATAAAAT-TGAAATGAAATTAGAAA-AAAAATGAATATGA
1 AAAAAAAGTGAAA-TGAAATAAAATGTGAAATGAAATTAGAAACAAAAATGAA-ATGA
* * * * *
767538 AAAAAAATTGAAATGAAATGAATTGTGAAATGAAATTAGAAACTAAATTGAAATGA
1 AAAAAAAGTGAAATGAAATAAAATGTGAAATGAAATTAGAAACAAAAATGAAATGA
767594 AAAAAAA
1 AAAAAAA
767601 AAGTGACAAG
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
55 9 0.16
56 40 0.71
57 7 0.12
ACGTcount: A:0.63, C:0.01, G:0.14, T:0.22
Consensus pattern (56 bp):
AAAAAAAGTGAAATGAAATAAAATGTGAAATGAAATTAGAAACAAAAATGAAATGA
Found at i:767579 original size:12 final size:11
Alignment explanation
Indices: 767490--767595 Score: 76
Period size: 11 Copynumber: 9.5 Consensus size: 11
767480 CTAAAAAAAG
767490 TGAAATTGAAA
1 TGAAATTGAAA
*
767501 TAAAATTGAAA
1 TGAAATTGAAA
767512 TGAAATTAGAAA
1 TGAAATT-GAAA
* *
767524 -AAAAATGAATA
1 TGAAATTGAA-A
**
767535 TGAAA-AAAAA
1 TGAAATTGAAA
767545 TTGAAA-TGAAA
1 -TGAAATTGAAA
*
767556 TGAATTGTGAAA
1 TGAAAT-TGAAA
767568 TGAAATTAGAAA
1 TGAAATT-GAAA
767580 CT-AAATTGAAA
1 -TGAAATTGAAA
767591 TGAAA
1 TGAAA
767596 AAAAAAAGTG
Statistics
Matches: 75, Mismatches: 11, Indels: 18
0.72 0.11 0.17
Matches are distributed among these distances:
10 9 0.12
11 39 0.52
12 26 0.35
13 1 0.01
ACGTcount: A:0.59, C:0.01, G:0.15, T:0.25
Consensus pattern (11 bp):
TGAAATTGAAA
Found at i:767901 original size:10 final size:10
Alignment explanation
Indices: 767888--767941 Score: 56
Period size: 10 Copynumber: 5.4 Consensus size: 10
767878 TCATCGCCAT
767888 TCACCGTCGA
1 TCACCGTCGA
*
767898 TCACTGTCGA
1 TCACCGTCGA
767908 TCACC-TCCGA
1 TCACCGT-CGA
* *
767918 TCACCATCGT
1 TCACCGTCGA
*
767928 TCACCGCCGA
1 TCACCGTCGA
767938 TCAC
1 TCAC
767942 TCAATGGATC
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
9 1 0.03
10 34 0.94
11 1 0.03
ACGTcount: A:0.20, C:0.43, G:0.15, T:0.22
Consensus pattern (10 bp):
TCACCGTCGA
Found at i:770239 original size:89 final size:90
Alignment explanation
Indices: 770104--770336 Score: 276
Period size: 90 Copynumber: 2.6 Consensus size: 90
770094 TTAATAAAAC
* * * *
770104 AAATATATAATTTGAAA-AA-AAATAATACGCAAC-AAATGAAATTTACAGATACAAGAAAATAA
1 AAATATAAAATTT-AAACAACAAATAATAC-AAACTAAATTAAATTTACAGATACAACAAAATAA
* * *
770166 AAACA-TTCTATAATATTAATACACGA
64 AAACAGATCGATAAAATTAATACACGA
** *
770192 AAATATAAAATTTAAACAACAAATAATACAAACTAAATTAAATTTACAGACCCAACAAAATACAA
1 AAATATAAAATTTAAACAACAAATAATACAAACTAAATTAAATTTACAGATACAACAAAATAAAA
* *
770257 ACAGATGGGTAAAATTAATACACGA
66 ACAGATCGATAAAATTAATACACGA
** **
770282 AAATATAAAATTCGAACAACAAATAATACAAACTAAATTTGATTTACAGATACAA
1 AAATATAAAATTTAAACAACAAATAATACAAACTAAATTAAATTTACAGATACAA
770337 AAATAATACA
Statistics
Matches: 123, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
87 3 0.02
88 17 0.14
89 38 0.31
90 65 0.53
ACGTcount: A:0.58, C:0.12, G:0.06, T:0.24
Consensus pattern (90 bp):
AAATATAAAATTTAAACAACAAATAATACAAACTAAATTAAATTTACAGATACAACAAAATAAAA
ACAGATCGATAAAATTAATACACGA
Found at i:772689 original size:17 final size:16
Alignment explanation
Indices: 772610--772690 Score: 56
Period size: 17 Copynumber: 4.8 Consensus size: 16
772600 ATTTATAATT
*
772610 TGAATATGAAATGAAA
1 TGAAAATGAAATGAAA
772626 TTG-AAATGAGAATGAGAA
1 -TGAAAATGA-AATGA-AA
** *
772644 TGAAAATGCGGATGATA
1 TGAAAATG-AAATGAAA
772661 TGAAAATGGAAATGAATA
1 TGAAAAT-GAAATGAA-A
*
772679 TGAATATGAAAT
1 TGAAAATGAAAT
772691 CGATTGTTTT
Statistics
Matches: 50, Mismatches: 8, Indels: 12
0.71 0.11 0.17
Matches are distributed among these distances:
16 5 0.10
17 26 0.52
18 19 0.38
ACGTcount: A:0.51, C:0.01, G:0.23, T:0.25
Consensus pattern (16 bp):
TGAAAATGAAATGAAA
Found at i:775236 original size:27 final size:27
Alignment explanation
Indices: 775198--775251 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
775188 TATACAATCC
* *
775198 TTACACATTAAAATATGAATTTTAAAA
1 TTACACATTAAAACATAAATTTTAAAA
775225 TTACACATTAAAACATAAATTTTAAAA
1 TTACACATTAAAACATAAATTTTAAAA
775252 ACTTATAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.54, C:0.09, G:0.02, T:0.35
Consensus pattern (27 bp):
TTACACATTAAAACATAAATTTTAAAA
Found at i:779557 original size:20 final size:18
Alignment explanation
Indices: 779510--779558 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
779500 CAAGATAAAC
779510 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
779527 ATT-AATATAATCACTTTAAT
1 ATTAAAT-TAAT-A-TTTAAT
779547 ATTAAATTAATA
1 ATTAAATTAATA
779559 AAATACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
16 3 0.11
17 6 0.22
19 2 0.07
20 13 0.48
21 3 0.11
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:779570 original size:25 final size:26
Alignment explanation
Indices: 779522--779582 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 26
779512 TAAATTAAAT
*
779522 TTAATATTAATATAATCACTTTAATA
1 TTAATATTAATAAAATCACTTTAATA
*
779548 TTAA-ATTAATAAAAT-ACTATTAAGA
1 TTAATATTAATAAAATCACT-TTAATA
*
779573 TAAATATTAA
1 TTAATATTAA
779583 ATTTAATTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 3 0.10
25 18 0.60
26 9 0.30
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.41
Consensus pattern (26 bp):
TTAATATTAATAAAATCACTTTAATA
Found at i:785987 original size:12 final size:12
Alignment explanation
Indices: 785972--785996 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
785962 TCAGTTACCT
785972 TTTCAAATTTGG
1 TTTCAAATTTGG
785984 TTTCAAATTTGG
1 TTTCAAATTTGG
785996 T
1 T
785997 GAACATTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.16, T:0.52
Consensus pattern (12 bp):
TTTCAAATTTGG
Found at i:790450 original size:188 final size:183
Alignment explanation
Indices: 790114--790468 Score: 593
Period size: 188 Copynumber: 1.9 Consensus size: 183
790104 GAAGGAGTTG
*
790114 ATACTTTAATGTCACTTTCCATAGTTTGTTTAAAGATGAATAAAGTTGCATACCCCAATTCCAAC
1 ATACTTTAATGTCACTTTCCATAGTTTGTTTAAAGATGAATAAAGTTGCATACCCAAATTCCAAC
**
790179 TTGACTCTCTTTGCAATATACTCTCAAAATCATTATAATCAAACCCAACTAGAAAGTTCCTCCCC
66 TCAACTCTCTTTGCAATATACTCTCAAAATCATTATAATCAAACCCAACTAGAAAGTTCCTCCCC
* *
790244 GCCAAACCATAGAACAAAAAAAGAGAAAAAAAGAAAATATTGAAAAAACTTTT
131 GCCAAACCACAAAACAAAAAAAGAGAAAAAAAGAAAATATTGAAAAAACTTTT
790297 ATACTTTAATGTCACTTTCCATAGTTTGTTTAAAGATGAATAAAGTTGCATACCCAAATTCCAAC
1 ATACTTTAATGTCACTTTCCATAGTTTGTTTAAAGATGAATAAAGTTGCATACCCAAATTCCAAC
* *
790362 TCAACAATCTTCTCTCTGCAATATGCTCTCAAAATCATTATAATCAAACCTAACTAGAAAGTTCC
66 TCAAC--TC-TCT-T-TGCAATATACTCTCAAAATCATTATAATCAAACCCAACTAGAAAGTTCC
*
790427 TCCCCGCCAAACTACAAAACAAAAAAAGAGAAAAAAAGAAAA
126 TCCCCGCCAAACCACAAAACAAAAAAAGAGAAAAAAAGAAAA
790469 AGAAAAAATT
Statistics
Matches: 159, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
183 67 0.42
185 2 0.01
186 3 0.02
187 1 0.01
188 86 0.54
ACGTcount: A:0.43, C:0.21, G:0.09, T:0.27
Consensus pattern (183 bp):
ATACTTTAATGTCACTTTCCATAGTTTGTTTAAAGATGAATAAAGTTGCATACCCAAATTCCAAC
TCAACTCTCTTTGCAATATACTCTCAAAATCATTATAATCAAACCCAACTAGAAAGTTCCTCCCC
GCCAAACCACAAAACAAAAAAAGAGAAAAAAAGAAAATATTGAAAAAACTTTT
Found at i:793616 original size:14 final size:14
Alignment explanation
Indices: 793597--793627 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
793587 GAGAACTTTG
793597 TTTAGGCTTATGTT
1 TTTAGGCTTATGTT
793611 TTTAGGCTTATGTT
1 TTTAGGCTTATGTT
793625 TTT
1 TTT
793628 GGATTGCTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.13, C:0.06, G:0.19, T:0.61
Consensus pattern (14 bp):
TTTAGGCTTATGTT
Found at i:800319 original size:17 final size:18
Alignment explanation
Indices: 800299--800332 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
800289 TTTTGTTCCT
*
800299 TTTTTTCTTTTT-ATTTG
1 TTTTTCCTTTTTCATTTG
800316 TTTTTCCTTTTTCATTT
1 TTTTTCCTTTTTCATTT
800333 TCCATCCTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.06, C:0.12, G:0.03, T:0.79
Consensus pattern (18 bp):
TTTTTCCTTTTTCATTTG
Found at i:806622 original size:1 final size:1
Alignment explanation
Indices: 806616--806682 Score: 62
Period size: 1 Copynumber: 67.0 Consensus size: 1
806606 GTGCAGATTC
* * * * * * * *
806616 AAAAAAAAAACAAAAAACAAAAAAAACAAACAAAAAAAACAAAAAAAAAACAAAAAGAAACAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
806681 AA
1 AA
806683 CCTCTACATG
Statistics
Matches: 50, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 50 1.00
ACGTcount: A:0.88, C:0.10, G:0.01, T:0.00
Consensus pattern (1 bp):
A
Found at i:806641 original size:20 final size:20
Alignment explanation
Indices: 806615--806682 Score: 102
Period size: 20 Copynumber: 3.4 Consensus size: 20
806605 AGTGCAGATT
806615 CAAAAAAAAAACAAAAAACAA
1 CAAAAAAAAAACAAAAAA-AA
*
806636 -AAAAAACAAACAAAAAAAA
1 CAAAAAAAAAACAAAAAAAA
806655 CAAAAAAAAAACAAAAAGAAA
1 CAAAAAAAAAACAAAAA-AAA
806676 CAAAAAA
1 CAAAAAA
806683 CCTCTACATG
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
19 2 0.05
20 31 0.72
21 10 0.23
ACGTcount: A:0.87, C:0.12, G:0.01, T:0.00
Consensus pattern (20 bp):
CAAAAAAAAAACAAAAAAAA
Found at i:806656 original size:29 final size:30
Alignment explanation
Indices: 806618--806682 Score: 105
Period size: 29 Copynumber: 2.2 Consensus size: 30
806608 GCAGATTCAA
*
806618 AAAAAAAACAAAAAACAAA-AAAAACAAAC
1 AAAAAAAACAAAAAAAAAACAAAAACAAAC
*
806647 AAAAAAAACAAAAAAAAAACAAAAAGAAAC
1 AAAAAAAACAAAAAAAAAACAAAAACAAAC
806677 AAAAAA
1 AAAAAA
806683 CCTCTACATG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
29 18 0.55
30 15 0.45
ACGTcount: A:0.88, C:0.11, G:0.02, T:0.00
Consensus pattern (30 bp):
AAAAAAAACAAAAAAAAAACAAAAACAAAC
Found at i:807201 original size:34 final size:32
Alignment explanation
Indices: 807153--807216 Score: 83
Period size: 32 Copynumber: 1.9 Consensus size: 32
807143 TTGGGTCGCA
*
807153 AAAAAAAGAGTGAAAAAATAAAAAATGGAAAACT
1 AAAAAAAGAATG--AAAATAAAAAATGGAAAACT
* *
807187 AAAAAATGAATGAAAATGAAAAATGGAAAA
1 AAAAAAAGAATGAAAATAAAAAATGGAAAA
807217 AGTAAAAATG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 17 0.63
34 10 0.37
ACGTcount: A:0.70, C:0.02, G:0.16, T:0.12
Consensus pattern (32 bp):
AAAAAAAGAATGAAAATAAAAAATGGAAAACT
Found at i:808667 original size:127 final size:128
Alignment explanation
Indices: 808440--808691 Score: 425
Period size: 127 Copynumber: 2.0 Consensus size: 128
808430 CCGGTAAAAC
* * * * *
808440 TTCAGTCTTATCTTCCTGAAGATTGTAGTGGAGCAGGCAGAAGAAATCAATCCTATCTCCCTGAA
1 TTCAGTCTTATCTCCCTGAAGATTGCAGTGGAGCAGACAAAAGAAATCAATCCTATCTCCCTAAA
* * *
808505 GTTGCAGCGGAGTGGATTAACATCTAGATCTTATCTTTCTGAGGTTTCAGAGAGCAGATCGCA
66 GTTGCAGCGGAGTGCATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGAGCAGATCGCA
808568 TTCAGTCTTATCTCCCTGAAG-TTGCAGTGGAGCAGACAAAAGAAATCAATCCTATCTCCCTAAA
1 TTCAGTCTTATCTCCCTGAAGATTGCAGTGGAGCAGACAAAAGAAATCAATCCTATCTCCCTAAA
808632 GTTGCAGCGGAGTGCATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGAGCAGATC
66 GTTGCAGCGGAGTGCATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGAGCAGATC
808692 TAATAGAGGG
Statistics
Matches: 116, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
127 96 0.83
128 20 0.17
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (128 bp):
TTCAGTCTTATCTCCCTGAAGATTGCAGTGGAGCAGACAAAAGAAATCAATCCTATCTCCCTAAA
GTTGCAGCGGAGTGCATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGAGCAGATCGCA
Found at i:810302 original size:127 final size:127
Alignment explanation
Indices: 810076--810354 Score: 486
Period size: 127 Copynumber: 2.2 Consensus size: 127
810066 AAACCAATCC
* *
810076 TATCTCCCTGAAGTTGCAATGGAGCAGACAGAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCCTATCTCCCTAAAGTTGCAGTG
* * *
810141 GAGCGGATCAACATTCAGATCTTATCTTTCTGAGGTTGCAGAGAGCAAATCACATCTAGTCT
66 GAGCAGATCAACATCCAAATCTTATCTTTCTGAGGTTGCAGAGAGCAAATCACATCTAGTCT
* *
810203 TATCTCCCTGAAGTTGTAGTGGAGCAGACAGAAGAAATCAATCCTATCTCCCTAAAGTTGCAGTG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCCTATCTCCCTAAAGTTGCAGTG
*
810268 GAGCAGATTAACATCCAAATCTTATCTTTCTGAGGTTGCAGAGAGCAAATCACATCTAGTCT
66 GAGCAGATCAACATCCAAATCTTATCTTTCTGAGGTTGCAGAGAGCAAATCACATCTAGTCT
810330 TATCTCCCTGAAGTTGCAGTGGAGC
1 TATCTCCCTGAAGTTGCAGTGGAGC
810355 GGATCAACAT
Statistics
Matches: 143, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
127 143 1.00
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (127 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCCTATCTCCCTAAAGTTGCAGTG
GAGCAGATCAACATCCAAATCTTATCTTTCTGAGGTTGCAGAGAGCAAATCACATCTAGTCT
Found at i:810331 original size:40 final size:41
Alignment explanation
Indices: 810120--811201 Score: 390
Period size: 44 Copynumber: 25.7 Consensus size: 41
810110 AAACCAATCC
* *
810120 TATCTCCCTGAAGTTGCAGTGGAGCGGATCAACAT-TCAGATCT
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATC-ACATCT-AG-TCT
** * *
810163 TATCTTTCTGAGGTTGCAG-AGAGCAAATCACATCTAGTCT
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATCACATCTAGTCT
* ** * * *
810203 TATCTCCCTGAAGTTGTAGTGGAGCAGACAGAAGAAATC-AATCC
1 TATCTCCCTGAAGTTGCAGT--AG-AG-CAGATCACATCTAGTCT
* * * * *
810247 TATCTCCCTAAAGTTGCAGTGGAGCAGATTAACATCCAAATCT
1 TATCTCCCTGAAGTTGCAGTAGAGCAGA-TCACAT-CTAGTCT
** * *
810290 TATCTTTCTGAGGTTGCAG-AGAGCAAATCACATCTAGTCT
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATCACATCTAGTCT
* *
810330 TATCTCCCTGAAGTTGCAGTGGAGCGGATCAACAT-TCAGATCT
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATC-ACATCT-AG-TCT
** * * *
810373 TATCTTTCTGAGGTTGCAG-AGAGCAGATCGCATCCAGTCT
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATCACATCTAGTCT
* * *
810413 TATCTCCCTGAAGTTGCAGTAGAGCAGA-CAGAAGAAAT-TAATCC
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATC-----ACATCTAGTCT
* * * * *
810457 TATCTCCCCGAAGTTGCAGTGGAGCGGATTAACATCCAGATCT
1 TATCTCCCTGAAGTTGCAGTAGAGCAGA-TCACATCTAG-TCT
** * * * *
810500 TATCTTTCTGAGGTTACAG-AGAGCAGATCATAT-TCGGTCT
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATCACATCT-AGTCT
* ** * * * *
810540 TATCTCCCTGAAGTTACAGTGGAGCAGACAGAAGAAACCAATTC-
1 TATCTCCCTGAAGTTGCAGT--AG-AG-CAGATCACATCTAGTCT
* * * * *
810584 TATCTCCCTGAAGTTGTAGTGGAGCGGATTAACATCCAGATCT
1 TATCTCCCTGAAGTTGCAGTAGAGCAGA-TCACATCTAG-TCT
** * * *
810627 TATCTTTCTGAGGTTGCAG-AGAGCAGATCGCATCCAGTCT
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATCACATCTAGTCT
* * * * *
810667 TATCTCCCTGAAGTTGCAGTAGAGCAGA-CAGAAGAAACCAATCC
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATC---A-CATCTAGTCT
* * * *
810711 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAACATCCAGATCT
1 TATCTCCCTGAAGTTGCAGTAGAGCAGA-TCACATCTAG-TCT
** * * * * *
810754 TATCTTTCTGAGGTTACAG-AAAGCAGATCATAT-TCGGTCT
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATCACATCT-AGTCT
* * ** * * * *
810794 TATCTCCCTAAAGTTACAGTGGAGCAGACAGAAGAAACCAATTC-
1 TATCTCCCTGAAGTTGCAGT--AG-AG-CAGATCACATCTAGTCT
* * * * * *
810838 TATCTCCCTAAAGTTGTAGTGGAGCGGATTAACATCCAGATCT
1 TATCTCCCTGAAGTTGCAGTAGAGCAGA-TCACATCTAG-TCT
** * * *
810881 TATCTTTCTGAGGTTGCAG-AGAGCAGATCGCATCCAGTCT
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATCACATCTAGTCT
* * * * *
810921 TATCTCCCTGAAGTTGCAGTAGAGCAGA-CAGAAGAAACCAATCC
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATC---A-CATCTAGTCT
* *
810965 TATCTCCCTGAAGTTGCAG-AGGAGCAGATTAACATCCAGATCT
1 TATCTCCCTGAAGTTGCAGTA-GAGCAGA-TCACATCTAG-TCT
** * * *
811008 TATCTTTCTGAGGTTGCAG-AGAGTAGATCACATCCAGTCT
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATCACATCTAGTCT
* * * * * * *
811048 TATCTCCCTGAAGTTGTAATGGAGCAGA-CAGAAGAAACTAATCC
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATC---A-CATCTAGTCT
* * * * *
811092 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAACATCCAAATCT
1 TATCTCCCTGAAGTTGCAGTAGAGCAGA-TCACAT-CTAGTCT
* ** * * * *
811135 TATTTTTCTGAGGCTGCAG-AGAGCAGATCGCATCCAGTCT
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATCACATCTAGTCT
* * *
811175 TATTTCCTTGAAGTTGCAGTGGAGCAG
1 TATCTCCCTGAAGTTGCAGTAGAGCAG
811202 GCAGAAGTAA
Statistics
Matches: 757, Mismatches: 212, Indels: 142
0.68 0.19 0.13
Matches are distributed among these distances:
40 183 0.24
41 119 0.16
42 81 0.11
43 164 0.22
44 185 0.24
45 25 0.03
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (41 bp):
TATCTCCCTGAAGTTGCAGTAGAGCAGATCACATCTAGTCT
Found at i:810461 original size:127 final size:127
Alignment explanation
Indices: 810330--811274 Score: 1451
Period size: 127 Copynumber: 7.4 Consensus size: 127
810320 CATCTAGTCT
* *
810330 TATCTCCCTGAAGTTGCAGTGGAGCGGATCAACATTCAGATCTTATCTTTCTGAGGTTGCAGAGA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGA
* **
810395 GCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACAGAAGAAATTAATCC
66 GCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCC
* *
810457 TATCTCCCCGAAGTTGCAGTGGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTACAGAGA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGA
** * * * *
810522 GCAGATCATATTCGGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACAGAAGAAACCAATTC
66 GCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCC
*
810584 TATCTCCCTGAAGTTGTAGTGGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGA
*
810649 GCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACAGAAGAAACCAATCC
66 GCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCC
* *
810711 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTACAGAAA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGA
** * * * * *
810776 GCAGATCATATTCGGTCTTATCTCCCTAAAGTTACAGTGGAGCAGACAGAAGAAACCAATTC
66 GCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCC
* *
810838 TATCTCCCTAAAGTTGTAGTGGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGA
*
810903 GCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACAGAAGAAACCAATCC
66 GCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCC
* *
810965 TATCTCCCTGAAGTTGCAGAGGAGCAGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGA
* * * * *
811030 GTAGATCACATCCAGTCTTATCTCCCTGAAGTTGTAATGGAGCAGACAGAAGAAACTAATCC
66 GCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCC
* * *
811092 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAACATCCAAATCTTATTTTTCTGAGGCTGCAGAGA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGA
* * * *
811157 GCAGATCGCATCCAGTCTTATTTCCTTGAAGTTGCAGTGGAGCAGGCAGAAGTAAA-TAATCC
66 GCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAG-AAACCAATCC
* * * *
811219 TATCTCCCTGAGGTTGCAGTGGAGTGGATCAAACCATGCAGATCTTATCTTTCTGA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGAT-TAA-CATCCAGATCTTATCTTTCTGA
811275 AATTGCAGCA
Statistics
Matches: 741, Mismatches: 74, Indels: 4
0.90 0.09 0.00
Matches are distributed among these distances:
127 717 0.97
128 5 0.01
129 19 0.03
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (127 bp):
TATCTCCCTGAAGTTGCAGTGGAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGCAGAGA
GCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCC
Found at i:811984 original size:17 final size:18
Alignment explanation
Indices: 811958--811991 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
811948 TTCTGTTCCT
*
811958 TTTTTTCTTTTT-ATTTG
1 TTTTTCCTTTTTCATTTG
811975 TTTTTCCTTTTTCATTT
1 TTTTTCCTTTTTCATTT
811992 TCCATCTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.06, C:0.12, G:0.03, T:0.79
Consensus pattern (18 bp):
TTTTTCCTTTTTCATTTG
Found at i:814545 original size:14 final size:14
Alignment explanation
Indices: 814496--814532 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
814486 ATTTTACCCT
814496 AAACCTTGAA-CTC
1 AAACCTTGAACCTC
*
814509 AAATCTTGAACCTC
1 AAACCTTGAACCTC
814523 AAACCTTGAA
1 AAACCTTGAA
814533 TCTCGAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 9 0.43
14 12 0.57
ACGTcount: A:0.41, C:0.27, G:0.08, T:0.24
Consensus pattern (14 bp):
AAACCTTGAACCTC
Found at i:816809 original size:17 final size:18
Alignment explanation
Indices: 816789--816860 Score: 67
Period size: 18 Copynumber: 4.0 Consensus size: 18
816779 GTATTCAAAA
816789 TTATTATTTT-AATTTTT
1 TTATTATTTTAAATTTTT
816806 TTATTATTTTAAATTTTT
1 TTATTATTTTAAATTTTT
* * *
816824 ATATCT-TTTTAGATTGTT
1 TTAT-TATTTTAAATTTTT
**
816842 TTAGAACTTTTAAATTTTT
1 TTATTA-TTTTAAATTTTT
816861 AACTATTTAA
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
17 10 0.23
18 22 0.51
19 11 0.26
ACGTcount: A:0.26, C:0.03, G:0.04, T:0.67
Consensus pattern (18 bp):
TTATTATTTTAAATTTTT
Found at i:816824 original size:16 final size:17
Alignment explanation
Indices: 816789--816825 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
816779 GTATTCAAAA
*
816789 TTATTATTTTAATTTTT
1 TTATTATTTTAATATTT
816806 TTATTATTTTAA-ATTT
1 TTATTATTTTAATATTT
816822 TTAT
1 TTAT
816826 ATCTTTTTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (17 bp):
TTATTATTTTAATATTT
Found at i:816869 original size:16 final size:16
Alignment explanation
Indices: 816846--816879 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
816836 ATTGTTTTAG
816846 AACTTTTAAAT-TTTT
1 AACTTTTAAATATTTT
816861 AACTATTTAAATATTTT
1 AACT-TTTAAATATTTT
816878 AA
1 AA
816880 AAAATTATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 7 0.41
17 6 0.35
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (16 bp):
AACTTTTAAATATTTT
Found at i:817924 original size:21 final size:21
Alignment explanation
Indices: 817884--817924 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
817874 CTCATAGGAA
*
817884 AAGAGAAGAGAAAATAAGAGT
1 AAGAGAAGAGAAAAGAAGAGT
817905 AAGAG-AGAGAAAAGAGAGAG
1 AAGAGAAGAGAAAAGA-AGAG
817925 ACAATGTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.61, C:0.00, G:0.34, T:0.05
Consensus pattern (21 bp):
AAGAGAAGAGAAAAGAAGAGT
Found at i:821175 original size:6 final size:6
Alignment explanation
Indices: 821164--821191 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
821154 AGTTTCACAT
821164 ATTTTA ATTTTA ATTTTA ATTTTA ATTT
1 ATTTTA ATTTTA ATTTTA ATTTTA ATTT
821192 AGTATATGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
ATTTTA
Found at i:822793 original size:13 final size:13
Alignment explanation
Indices: 822775--822807 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
822765 TAGCACAATT
822775 GGGAAATCAGCAA
1 GGGAAATCAGCAA
*
822788 GGGAAATCAGTAA
1 GGGAAATCAGCAA
822801 GGGAAAT
1 GGGAAAT
822808 GGGAAAACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.45, C:0.09, G:0.33, T:0.12
Consensus pattern (13 bp):
GGGAAATCAGCAA
Found at i:825396 original size:20 final size:20
Alignment explanation
Indices: 825371--825408 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
825361 GCCCCGTTTC
*
825371 ACTAAAGCTTTTATACGCCT
1 ACTAAAGCTTCTATACGCCT
825391 ACTAAAGCTTCTATACGC
1 ACTAAAGCTTCTATACGC
825409 ACCGTTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.26, G:0.11, T:0.32
Consensus pattern (20 bp):
ACTAAAGCTTCTATACGCCT
Found at i:834534 original size:11 final size:11
Alignment explanation
Indices: 834520--834560 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
834510 TGTTTTCTCC
834520 CTATTTTGCTA
1 CTATTTTGCTA
*
834531 CTATTTTACTA
1 CTATTTTGCTA
* *
834542 TTATGTTGCTA
1 CTATTTTGCTA
834553 CTATTTTG
1 CTATTTTG
834561 TTGTTATTGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.56
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:836001 original size:11 final size:11
Alignment explanation
Indices: 835985--836015 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
835975 TATATATATT
835985 TAAAAATTATA
1 TAAAAATTATA
*
835996 TAAAAATAATA
1 TAAAAATTATA
836007 TAAAAATTA
1 TAAAAATTA
836016 ATACCAGAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
TAAAAATTATA
Found at i:840353 original size:20 final size:21
Alignment explanation
Indices: 840320--840383 Score: 71
Period size: 20 Copynumber: 3.2 Consensus size: 21
840310 TAGCTCCTTT
* *
840320 AGCTCGTTTCAGCTCCAA-TC
1 AGCTCATTTGAGCTCCAATTC
840340 AGCTCATTTGAGCT-CAATTC
1 AGCTCATTTGAGCTCCAATTC
* *
840360 AGCTCATTCGAGCT-CAATTT
1 AGCTCATTTGAGCTCCAATTC
840380 AGCT
1 AGCT
840384 TTCTATCAGC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
19 3 0.08
20 36 0.92
ACGTcount: A:0.23, C:0.28, G:0.16, T:0.33
Consensus pattern (21 bp):
AGCTCATTTGAGCTCCAATTC
Found at i:840374 original size:30 final size:30
Alignment explanation
Indices: 840317--840383 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 30
840307 TTCTAGCTCC
**
840317 TTTAGCTCGTTTCAGCTCCAATCAGCTC-A
1 TTTAGCTCAATTCAGCTCCAATCAGCTCAA
*
840346 TTTGAGCTCAATTCAGCT-CATTCGAGCTCAA
1 TTT-AGCTCAATTCAGCTCCAATC-AGCTCAA
840377 TTTAGCT
1 TTTAGCT
840384 TTCTATCAGC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
29 7 0.22
30 21 0.66
31 4 0.12
ACGTcount: A:0.22, C:0.27, G:0.15, T:0.36
Consensus pattern (30 bp):
TTTAGCTCAATTCAGCTCCAATCAGCTCAA
Found at i:863834 original size:4 final size:4
Alignment explanation
Indices: 863827--863881 Score: 51
Period size: 4 Copynumber: 13.8 Consensus size: 4
863817 CCGTGCGTGA
** *
863827 CTTT CTTT CTCC CTTT CTTT -TCTT -TTT CTTT CTTT TTTT CTTT CTTTT
1 CTTT CTTT CTTT CTTT CTTT CT-TT CTTT CTTT CTTT CTTT CTTT C-TTT
863875 CTTT CTT
1 CTTT CTT
863882 AATTTGCATG
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
3 3 0.07
4 35 0.83
5 4 0.10
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (4 bp):
CTTT
Found at i:863862 original size:9 final size:9
Alignment explanation
Indices: 863839--863881 Score: 61
Period size: 9 Copynumber: 4.8 Consensus size: 9
863829 TTCTTTCTCC
863839 CTTTCTTTT
1 CTTTCTTTT
*
863848 CTTTTTCTTT
1 CTTTCT-TTT
863858 CTTT-TTTT
1 CTTTCTTTT
863866 CTTTCTTTT
1 CTTTCTTTT
863875 CTTTCTT
1 CTTTCTT
863882 AATTTGCATG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
8 7 0.23
9 17 0.55
10 7 0.23
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (9 bp):
CTTTCTTTT
Found at i:868080 original size:27 final size:27
Alignment explanation
Indices: 868032--868083 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
868022 AAAAACATTT
*
868032 ATATACATGATATCAATTTATTCAAAA
1 ATATACATGATATCAATATATTCAAAA
868059 ATATACATGATATTC-ATATATTCAA
1 ATATACATGATA-TCAATATATTCAA
868084 TATATATGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.46, C:0.12, G:0.04, T:0.38
Consensus pattern (27 bp):
ATATACATGATATCAATATATTCAAAA
Found at i:874761 original size:16 final size:14
Alignment explanation
Indices: 874724--874766 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
874714 TTTTATGTTA
*
874724 TTTTTGTTTCTTTCT
1 TTTTTG-TTGTTTCT
874739 TTTTTGTTGTTTCT
1 TTTTTGTTGTTTCT
874753 TTGTCTTGTTGTTT
1 TT-T-TTGTTGTTT
874767 GCTACAGGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 9 0.36
15 7 0.28
16 9 0.36
ACGTcount: A:0.00, C:0.09, G:0.14, T:0.77
Consensus pattern (14 bp):
TTTTTGTTGTTTCT
Found at i:875256 original size:18 final size:18
Alignment explanation
Indices: 875213--875247 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
875203 AATTTTGAAC
875213 AAATA-ATATGAAAAAAT
1 AAATATATATGAAAAAAT
875230 AAATATATAT-AAAAAAT
1 AAATATATATGAAAAAAT
875247 A
1 A
875248 TACATTATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (18 bp):
AAATATATATGAAAAAAT
Found at i:890048 original size:114 final size:115
Alignment explanation
Indices: 889912--890142 Score: 455
Period size: 114 Copynumber: 2.0 Consensus size: 115
889902 TTATATTAGC
889912 AATACAATTTTGAACTATTATTTTTATATTAATCGAAATAAATAATATATATTTTTGAACTATTA
1 AATACAATTTTGAACTATTATTTTTATATTAATCGAAATAAATAATATATATTTTTGAACTATTA
889977 AAAAAATCGAACATTAACAATGTATTTTTTATAGGTTTTATACTTATTTT
66 AAAAAATCGAACATTAACAATGTATTTTTTATAGGTTTTATACTTATTTT
890027 AATACAATTTT-AACTATTATTTTTATATTAATCGAAATAAATAATATATATTTTTGAACTATTA
1 AATACAATTTTGAACTATTATTTTTATATTAATCGAAATAAATAATATATATTTTTGAACTATTA
890091 AAAAAATCGAACATTAACAATGTATTTTTTATAGGTTTTATACTTATTTT
66 AAAAAATCGAACATTAACAATGTATTTTTTATAGGTTTTATACTTATTTT
890141 AA
1 AA
890143 CCAAAGGATA
Statistics
Matches: 116, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
114 105 0.91
115 11 0.09
ACGTcount: A:0.42, C:0.07, G:0.06, T:0.46
Consensus pattern (115 bp):
AATACAATTTTGAACTATTATTTTTATATTAATCGAAATAAATAATATATATTTTTGAACTATTA
AAAAAATCGAACATTAACAATGTATTTTTTATAGGTTTTATACTTATTTT
Found at i:890671 original size:22 final size:22
Alignment explanation
Indices: 890646--890688 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
890636 ACACCAAAAC
*
890646 AGGCTTTTAGCGGCGCTTTTTT
1 AGGCCTTTAGCGGCGCTTTTTT
890668 AGGCCTTTAGCGGCGCTTTTT
1 AGGCCTTTAGCGGCGCTTTTT
890689 AGCGCAGCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.09, C:0.21, G:0.28, T:0.42
Consensus pattern (22 bp):
AGGCCTTTAGCGGCGCTTTTTT
Found at i:890708 original size:18 final size:18
Alignment explanation
Indices: 890685--890741 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 18
890675 TAGCGGCGCT
890685 TTTTAGCGCAGCAAATAC
1 TTTTAGCGCAGCAAATAC
890703 TTTTAGCG-ACGC---T--
1 TTTTAGCGCA-GCAAATAC
*
890716 TTTTAGCGCTGCAAATAC
1 TTTTAGCGCAGCAAATAC
890734 TTTTAGCG
1 TTTTAGCG
890742 GCGCTTTGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 14
0.67 0.02 0.30
Matches are distributed among these distances:
13 10 0.32
15 1 0.03
16 1 0.03
17 1 0.03
18 18 0.58
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (18 bp):
TTTTAGCGCAGCAAATAC
Found at i:890716 original size:31 final size:31
Alignment explanation
Indices: 890673--890748 Score: 134
Period size: 31 Copynumber: 2.5 Consensus size: 31
890663 TTTTTAGGCC
890673 TTTAGCGGCGCTTTTTAGCGCAGCAAATACT
1 TTTAGCGGCGCTTTTTAGCGCAGCAAATACT
* *
890704 TTTAGCGACGCTTTTTAGCGCTGCAAATACT
1 TTTAGCGGCGCTTTTTAGCGCAGCAAATACT
890735 TTTAGCGGCGCTTT
1 TTTAGCGGCGCTTT
890749 GAAAAGCGCC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (31 bp):
TTTAGCGGCGCTTTTTAGCGCAGCAAATACT
Found at i:890899 original size:43 final size:45
Alignment explanation
Indices: 890852--891072 Score: 160
Period size: 43 Copynumber: 5.1 Consensus size: 45
890842 ACCTTTAGTG
890852 GCGTTTGTGGTCGAAA-CGCCGCTATAGATCAGGGTCTTTTA-CA
1 GCGTTTGTGGTCGAAAGCGCCGCTATAGATCAGGGTCTTTTAGCA
* * * * * **
890895 GCGTTTGTGG-GGAAAGCGCCGCTAAAGGTTAGGTTC-TTTAGTG
1 GCGTTTGTGGTCGAAAGCGCCGCTATAGATCAGGGTCTTTTAGCA
*
890938 GCGTTTGTGGTC-AAAGCGCCGCTATAGATCAGGGTC-TTTAGCG
1 GCGTTTGTGGTCGAAAGCGCCGCTATAGATCAGGGTCTTTTAGCA
* * * * *
890981 GCGTTT-TTG-CGGCAAGCGCCACTAAAGATTAGGGTC-TTTAGC-
1 GCGTTTGTGGTC-GAAAGCGCCGCTATAGATCAGGGTCTTTTAGCA
* ** * * * *
891023 GACGTTTCT-CCCTAAAGCGCCGCTAAAGATTAGGGTC-TTTAGCG
1 G-CGTTTGTGGTCGAAAGCGCCGCTATAGATCAGGGTCTTTTAGCA
891067 GCGTTT
1 GCGTTT
891073 CTCCCTAAAA
Statistics
Matches: 147, Mismatches: 22, Indels: 18
0.79 0.12 0.10
Matches are distributed among these distances:
41 1 0.01
42 11 0.07
43 132 0.90
44 3 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
GCGTTTGTGGTCGAAAGCGCCGCTATAGATCAGGGTCTTTTAGCA
Found at i:890941 original size:86 final size:86
Alignment explanation
Indices: 890844--891072 Score: 275
Period size: 86 Copynumber: 2.7 Consensus size: 86
890834 AGACTATGAC
*
890844 CTTTAGTGGCGTTTGTGGTCGAAA-CGCCGCTATAGATCAGGGTCTTTTA-CAGCGTTTGTGGGG
1 CTTTAGTGGCGTTTGTGGTC-AAAGCGCCGCTATAGATCAGGGTC-TTTAGCAGCGTTTGTGCGG
* * *
890907 AAAGCGCCGCTAAAGGTTAGGTT
64 AAAGCGCCACTAAAGATTAGGGT
* * *
890930 CTTTAGTGGCGTTTGTGGTCAAAGCGCCGCTATAGATCAGGGTCTTTAGCGGCGTTTTTGCGGCA
1 CTTTAGTGGCGTTTGTGGTCAAAGCGCCGCTATAGATCAGGGTCTTTAGCAGCGTTTGTGCGGAA
890995 AGCGCCACTAAAGATTAGGGT
66 AGCGCCACTAAAGATTAGGGT
* * * ** * * *
891016 CTTTAGCGACGTTTCT-CCCTAAAGCGCCGCTAAAGATTAGGGTCTTTAGCGGCGTTT
1 CTTTAGTGGCGTTTGTGGTC-AAAGCGCCGCTATAGATCAGGGTCTTTAGCAGCGTTT
891073 CTCCCTAAAA
Statistics
Matches: 126, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
85 8 0.06
86 118 0.94
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (86 bp):
CTTTAGTGGCGTTTGTGGTCAAAGCGCCGCTATAGATCAGGGTCTTTAGCAGCGTTTGTGCGGAA
AGCGCCACTAAAGATTAGGGT
Found at i:891073 original size:43 final size:43
Alignment explanation
Indices: 890907--891094 Score: 207
Period size: 43 Copynumber: 4.4 Consensus size: 43
890897 GTTTGTGGGG
* * * * **
890907 AAAGCGCCGCTAAAGGTTAGGTTCTTTAGTGGCGTTTGT-GGT
1 AAAGCGCCGCTAAAGATTAGGGTCTTTAGCGGCGTTTCTCCCT
* * * * **
890949 CAAAGCGCCGCTATAGATCAGGGTCTTTAGCGGCGTTTTTGCGG
1 -AAAGCGCCGCTAAAGATTAGGGTCTTTAGCGGCGTTTCTCCCT
* * *
890993 CAAGCGCCACTAAAGATTAGGGTCTTTAGCGACGTTTCTCCCT
1 AAAGCGCCGCTAAAGATTAGGGTCTTTAGCGGCGTTTCTCCCT
891036 AAAGCGCCGCTAAAGATTAGGGTCTTTAGCGGCGTTTCTCCCT
1 AAAGCGCCGCTAAAGATTAGGGTCTTTAGCGGCGTTTCTCCCT
* *
891079 AAAACGCCGCAAAAGA
1 AAAGCGCCGCTAAAGA
891095 CCCTGATCTA
Statistics
Matches: 122, Mismatches: 22, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
43 121 0.99
44 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (43 bp):
AAAGCGCCGCTAAAGATTAGGGTCTTTAGCGGCGTTTCTCCCT
Found at i:891127 original size:43 final size:43
Alignment explanation
Indices: 891080--891258 Score: 144
Period size: 43 Copynumber: 4.2 Consensus size: 43
891070 TTTCTCCCTA
* * *
891080 AAACGCCGCAAAAGACCCTGATCTATAGTGGCTC-TTCGACCAC
1 AAACGCCGCAAAAGACCATGATCTATAGCGGCGCTTTC-ACCAC
** * * * *
891123 AAACGCAACTAAAGAACATAATCTATAGCGGCGCTTTCCCCAC
1 AAACGCCGCAAAAGACCATGATCTATAGCGGCGCTTTCACCAC
* * * **
891166 AAACGCCGCGAAAGACCATGATCTTTAGAGGCGCTTTTTCCAC
1 AAACGCCGCAAAAGACCATGATCTATAGCGGCGCTTTCACCAC
* * * * * * * *
891209 AAACGCTGCTAAAGAACGTTATCTTTAGCGGCGCTTTTACCAA
1 AAACGCCGCAAAAGACCATGATCTATAGCGGCGCTTTCACCAC
891252 AAACGCC
1 AAACGCC
891259 ACTAAAGGCC
Statistics
Matches: 108, Mismatches: 27, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
43 105 0.97
44 3 0.03
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.21
Consensus pattern (43 bp):
AAACGCCGCAAAAGACCATGATCTATAGCGGCGCTTTCACCAC
Found at i:891152 original size:86 final size:86
Alignment explanation
Indices: 891062--891258 Score: 220
Period size: 86 Copynumber: 2.3 Consensus size: 86
891052 TTAGGGTCTT
* * *
891062 TAGCGGCG-TTTCTCCCTAAAACGCCGCAAAAGACCCTGATCTATAGTGGCTCTTCGACCACAAA
1 TAGCGGCGCTTTCTCCC-AAAACGCCGCAAAAGACCATGATCTATAGAGGCGCTTCGACCACAAA
891126 CGCAACTAAAGAACATAATCTA
65 CGCAACTAAAGAACATAATCTA
* * ***
891148 TAGCGGCGCTTTC-CCCACAAACGCCGCGAAAGACCATGATCTTTAGAGGCGCTTTTTCCACAAA
1 TAGCGGCGCTTTCTCCCA-AAACGCCGCAAAAGACCATGATCTATAGAGGCGCTTCGACCACAAA
** * * *
891212 CGCTGCTAAAGAACGTTATCTT
65 CGCAACTAAAGAACATAATCTA
*
891234 TAGCGGCGCTTT-TACCAAAAACGCC
1 TAGCGGCGCTTTCT-CCCAAAACGCC
891259 ACTAAAGGCC
Statistics
Matches: 93, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
85 1 0.01
86 85 0.91
87 7 0.08
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.22
Consensus pattern (86 bp):
TAGCGGCGCTTTCTCCCAAAACGCCGCAAAAGACCATGATCTATAGAGGCGCTTCGACCACAAAC
GCAACTAAAGAACATAATCTA
Found at i:891264 original size:43 final size:43
Alignment explanation
Indices: 891118--891265 Score: 161
Period size: 43 Copynumber: 3.4 Consensus size: 43
891108 TGGCTCTTCG
* * *
891118 ACCACAAACGCAACTAAAGAACATAATCTATAGCGGCGCTTTC
1 ACCACAAACGCCACTAAAGAACATAATCTTTAGCGGCGCTTTT
* * * * * *
891161 CCCACAAACGCCGCGAAAGACCATGATCTTTAGAGGCGCTTTT
1 ACCACAAACGCCACTAAAGAACATAATCTTTAGCGGCGCTTTT
* ** * *
891204 TCCACAAACGCTGCTAAAGAACGTTATCTTTAGCGGCGCTTTT
1 ACCACAAACGCCACTAAAGAACATAATCTTTAGCGGCGCTTTT
*
891247 ACCAAAAACGCCACTAAAG
1 ACCACAAACGCCACTAAAG
891266 GCCAACACCT
Statistics
Matches: 85, Mismatches: 20, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 85 1.00
ACGTcount: A:0.34, C:0.28, G:0.17, T:0.21
Consensus pattern (43 bp):
ACCACAAACGCCACTAAAGAACATAATCTTTAGCGGCGCTTTT
Found at i:891278 original size:86 final size:86
Alignment explanation
Indices: 891119--891290 Score: 200
Period size: 86 Copynumber: 2.0 Consensus size: 86
891109 GGCTCTTCGA
* * *
891119 CCACAAACGCAACTAAAGAACATAATCTATAGCGGCGCTTTCCCCACAAACGCCGCGAAAGACCA
1 CCACAAACGCAACTAAAGAACATAATCTATAGCGGCGCTTTCACCAAAAACGCCACGAAAGACCA
** *
891184 TGATCTTTAGAGGCGCTTTTT
66 ACACCTTTAGAGGCGCTTTTT
** * * * * * *
891205 CCACAAACGCTGCTAAAGAACGTTATCTTTAGCGGCGCTTTTACCAAAAACGCCACTAAAGGCCA
1 CCACAAACGCAACTAAAGAACATAATCTATAGCGGCGCTTTCACCAAAAACGCCACGAAAGACCA
* *
891270 ACACCTTTAGTGGCGTTTTTT
66 ACACCTTTAGAGGCGCTTTTT
891291 TGAAAAACGC
Statistics
Matches: 70, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
86 70 1.00
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (86 bp):
CCACAAACGCAACTAAAGAACATAATCTATAGCGGCGCTTTCACCAAAAACGCCACGAAAGACCA
ACACCTTTAGAGGCGCTTTTT
Found at i:891645 original size:21 final size:21
Alignment explanation
Indices: 891616--891728 Score: 79
Period size: 21 Copynumber: 5.4 Consensus size: 21
891606 TTTGACGCTG
*
891616 CTCTACTTCCTTCGCTGCAGC
1 CTCTGCTTCCTTCGCTGCAGC
**
891637 CTCTGCTTCCCTT-GCTTTAGC
1 CTCTGCTT-CCTTCGCTGCAGC
* *
891658 CTCTGCTTCCCTCGCTGTAGC
1 CTCTGCTTCCTTCGCTGCAGC
* * * *
891679 CTATACTT-CTCTCACTGCCGC
1 CTCTGCTTCCT-TCGCTGCAGC
*
891700 CTCTGCTTCTCTT-GCTGCCGC
1 CTCTGCTTC-CTTCGCTGCAGC
*
891721 ATCTGCTT
1 CTCTGCTT
891729 TAAGCTGCTG
Statistics
Matches: 72, Mismatches: 15, Indels: 10
0.74 0.15 0.10
Matches are distributed among these distances:
20 4 0.06
21 61 0.85
22 5 0.07
23 2 0.03
ACGTcount: A:0.07, C:0.41, G:0.15, T:0.37
Consensus pattern (21 bp):
CTCTGCTTCCTTCGCTGCAGC
Found at i:891789 original size:66 final size:66
Alignment explanation
Indices: 891699--891864 Score: 210
Period size: 66 Copynumber: 2.5 Consensus size: 66
891689 CTCACTGCCG
* * *
891699 CCTCTGCTTCTCTTGCTGCCGCATCTGCTTTAAGCTGCT-GCTGGAGTTCTTCATA-CTTTCGTT
1 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGCTG-TAGCTGGAGTTCTTCATATCTTT-GTT
891762 GAA
64 GAA
* * *
891765 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTCAGTTGTAGCTGGAGTTCTTCATATCTTTTTTGA
1 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTGTTGA
891830 A
66 A
* * * *
891831 CCTCAGCTTCTCTCGATGTTGCCTCCGCTTTAAG
1 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAG
891865 TTGTGTAATT
Statistics
Matches: 87, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
65 1 0.01
66 82 0.94
67 4 0.05
ACGTcount: A:0.13, C:0.29, G:0.19, T:0.40
Consensus pattern (66 bp):
CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTGTTGA
A
Found at i:903640 original size:14 final size:14
Alignment explanation
Indices: 903621--903688 Score: 52
Period size: 14 Copynumber: 4.9 Consensus size: 14
903611 ATGACCGTTG
903621 AAACCCTAAATCTC
1 AAACCCTAAATCTC
*
903635 AAACCCCTAAACCTC
1 AAA-CCCTAAATCTC
*
903650 TAACCCTTAAAT-T-
1 AAACCC-TAAATCTC
* *
903663 -AACCTTAAATCCC
1 AAACCCTAAATCTC
*
903676 AAACCTTAAATCT
1 AAACCCTAAATCT
903689 ATACCCCGTA
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
11 5 0.12
12 4 0.09
14 18 0.42
15 16 0.37
ACGTcount: A:0.41, C:0.34, G:0.00, T:0.25
Consensus pattern (14 bp):
AAACCCTAAATCTC
Found at i:904285 original size:41 final size:43
Alignment explanation
Indices: 904238--904477 Score: 230
Period size: 41 Copynumber: 5.8 Consensus size: 43
904228 TAAAAGCCAC
* *
904238 AGCATTAGTGGCGCTCAGATAAAAACGCCACTAAAGATACTA-
1 AGCATTAGTGGCGCTCAGATAAAAACGCCGCTAAAGATACCAG
* * * * *
904280 A-CATTAGCGGCGCTTAGAAAAAAAGGCCGCTAAAG--GCCAG
1 AGCATTAGTGGCGCTCAGATAAAAACGCCGCTAAAGATACCAG
* *
904320 AGAATTAGTGGCGCTCAGATAAAAACGCCACTAAAGATA-C-G
1 AGCATTAGTGGCGCTCAGATAAAAACGCCGCTAAAGATACCAG
* * * *
904361 AGCATTAGCGGCGCTTAGAGAAAAACGCCGCTAAAG--GCCAG
1 AGCATTAGTGGCGCTCAGATAAAAACGCCGCTAAAGATACCAG
* *
904402 AGCATTAGTGGCGCTCAGATAAAAACCCCGCTAAAGAT--CGG
1 AGCATTAGTGGCGCTCAGATAAAAACGCCGCTAAAGATACCAG
* * * * *
904443 ACCATTAGCGGCGCTAAAACAAAAACGCCGCTAAA
1 AGCATTAGTGGCGCTCAGATAAAAACGCCGCTAAA
904478 CGTTTAAAAA
Statistics
Matches: 159, Mismatches: 31, Indels: 17
0.77 0.15 0.08
Matches are distributed among these distances:
39 2 0.01
40 2 0.01
41 153 0.96
42 2 0.01
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (43 bp):
AGCATTAGTGGCGCTCAGATAAAAACGCCGCTAAAGATACCAG
Found at i:904338 original size:82 final size:82
Alignment explanation
Indices: 904218--904477 Score: 380
Period size: 82 Copynumber: 3.2 Consensus size: 82
904208 GCTTACCTAT
* * * *
904218 AAAATGCCGCTAAAAGCCACAGCATTAGTGGCGCTCAGATAAAAACGCCACTAAAGATACTAACA
1 AAAACGCCGCTAAAGGCCAGAGCATTAGTGGCGCTCAGATAAAAACGCCACTAAAGATACGAACA
904283 TTAGCGGCGCTTAGAAA
66 TTAGCGGCGCTTAGAAA
* * *
904300 AAAAGGCCGCTAAAGGCCAGAGAATTAGTGGCGCTCAGATAAAAACGCCACTAAAGATACGAGCA
1 AAAACGCCGCTAAAGGCCAGAGCATTAGTGGCGCTCAGATAAAAACGCCACTAAAGATACGAACA
*
904365 TTAGCGGCGCTTAGAGA
66 TTAGCGGCGCTTAGAAA
* * *
904382 AAAACGCCGCTAAAGGCCAGAGCATTAGTGGCGCTCAGATAAAAACCCCGCTAAAGAT-CGGACC
1 AAAACGCCGCTAAAGGCCAGAGCATTAGTGGCGCTCAGATAAAAACGCCACTAAAGATAC-GAAC
*
904446 ATTAGCGGCGC-TAAAACA
65 ATTAGCGGCGCTTAGAA-A
904464 AAAACGCCGCTAAA
1 AAAACGCCGCTAAA
904478 CGTTTAAAAA
Statistics
Matches: 162, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
81 4 0.02
82 158 0.98
ACGTcount: A:0.39, C:0.24, G:0.23, T:0.15
Consensus pattern (82 bp):
AAAACGCCGCTAAAGGCCAGAGCATTAGTGGCGCTCAGATAAAAACGCCACTAAAGATACGAACA
TTAGCGGCGCTTAGAAA
Found at i:923679 original size:128 final size:128
Alignment explanation
Indices: 923448--923700 Score: 425
Period size: 128 Copynumber: 2.0 Consensus size: 128
923438 TGCATGCTTC
* *
923448 CTTAATCGCCAACACTTTTTCACTAGAGGCATCGACATTAACTTCAACACTCCTGAATATGGTAC
1 CTTAATCGCCAACACTTTTGCACTAGAGGCATCAACATTAACTTCAACACTCCTGAATATGGTAC
* *
923513 ACTCTATCGAGCCGAAGGCCTCACCCTTTTATATTTTTTCTTCAATCTAAAACAATTAGAAAA
66 ACTCTATCGAGCCAAAGGCCTCACCCTTTTATACTTTTTCTTCAATCTAAAACAATTAGAAAA
* * * * *
923576 CTTAATTGCCAACACTTTTGCACTGGAGGCATCAACATTAACTTCAACACTCCTGATTGTGGTGC
1 CTTAATCGCCAACACTTTTGCACTAGAGGCATCAACATTAACTTCAACACTCCTGAATATGGTAC
923641 ACTCTATCGAGCCAAAGGCCTCACCCTTTTATACTTTTTCTTCAATCTAAAACAATTAGA
66 ACTCTATCGAGCCAAAGGCCTCACCCTTTTATACTTTTTCTTCAATCTAAAACAATTAGA
923701 GAATCTGGAA
Statistics
Matches: 116, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
128 116 1.00
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (128 bp):
CTTAATCGCCAACACTTTTGCACTAGAGGCATCAACATTAACTTCAACACTCCTGAATATGGTAC
ACTCTATCGAGCCAAAGGCCTCACCCTTTTATACTTTTTCTTCAATCTAAAACAATTAGAAAA
Found at i:924216 original size:31 final size:31
Alignment explanation
Indices: 924178--924249 Score: 110
Period size: 31 Copynumber: 2.3 Consensus size: 31
924168 ATATTAAAAC
924178 TATACATGAACTTTGAACTAATGTTG-AATGT
1 TATACATGAACTTTGAACTAATG-TGCAATGT
*
924209 TATACATGAACTTTGAACTAATGTGCAATTT
1 TATACATGAACTTTGAACTAATGTGCAATGT
*
924240 TATATATGAA
1 TATACATGAA
924250 ATTTAGATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 2 0.05
31 36 0.95
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.39
Consensus pattern (31 bp):
TATACATGAACTTTGAACTAATGTGCAATGT
Found at i:944118 original size:43 final size:42
Alignment explanation
Indices: 944021--944125 Score: 129
Period size: 42 Copynumber: 2.5 Consensus size: 42
944011 GGTTTGAGAT
** *
944021 TTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATATGA
1 TTACGTGTAAGACCATGTCTAAGACAGTGGCATCGTATATGA
* * *
944063 TTACGTGTAAGACCCTGTCTAAGACAGTGGCATCATTATTTGA
1 TTACGTGTAAGACCATGTCTAAGACAGTGGCATC-GTATATGA
* *
944106 TTACATGTAAGACCACGTCT
1 TTACGTGTAAGACCATGTCT
944126 GGGACGTTGG
Statistics
Matches: 53, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 30 0.57
43 23 0.43
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (42 bp):
TTACGTGTAAGACCATGTCTAAGACAGTGGCATCGTATATGA
Found at i:944137 original size:43 final size:42
Alignment explanation
Indices: 943974--944138 Score: 158
Period size: 43 Copynumber: 3.9 Consensus size: 42
943964 TTCTGATATG
* *
943974 TGATTTCGTGTAAGACCACGTCTGGGACGATGGCATCGGTT-TGA
1 TGATTACGTGTAAGACCACGTCTGGGACGTTGGCATC--TTAT-A
* * *
944018 -GATTTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATA
1 TGA-TTACGTGTAAGACCACGTCTGGGACGTTGGCATCTTATA
** *
944060 TGATTACGTGTAAGACC-CTGTCTAAGACAG-TGGCATCATTATT
1 TGATTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCATC-TTATA
*
944103 TGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 TGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
944139 TATTCGAGCT
Statistics
Matches: 99, Mismatches: 14, Indels: 17
0.76 0.11 0.13
Matches are distributed among these distances:
42 31 0.31
43 37 0.37
44 31 0.31
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (42 bp):
TGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCTTATA
Found at i:948401 original size:49 final size:48
Alignment explanation
Indices: 948304--948408 Score: 113
Period size: 49 Copynumber: 2.1 Consensus size: 48
948294 GCATGAGATC
* * *
948304 AAACTAGATAGTAAAATATTCAAAAATAAAATAAAAATTATAAAACTTA
1 AAACTA-ATAATAAAAAATTCAAAAATAAAATAAAAATCATAAAACTTA
* * *
948353 AAACTAATAATAAAAAATTCAAAAAATGAAACT-TAAATCATAATACTTA
1 AAACTAATAATAAAAAATTC-AAAAAT-AAAATAAAAATCATAAAACTTA
*
948402 TAACTAA
1 AAACTAA
948409 CACCACAAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
48 12 0.26
49 31 0.66
50 4 0.09
ACGTcount: A:0.62, C:0.09, G:0.03, T:0.27
Consensus pattern (48 bp):
AAACTAATAATAAAAAATTCAAAAATAAAATAAAAATCATAAAACTTA
Found at i:952197 original size:51 final size:51
Alignment explanation
Indices: 952121--952304 Score: 214
Period size: 51 Copynumber: 3.6 Consensus size: 51
952111 GATGAACACG
*
952121 TGTGTAGTACTATGTGAAGGCTACTACGTGTA-TCGATAAATA-ATGGTCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACT-GATAAA-ACTTGGTCACA
* * * **
952172 TGTGTAGTACTAAGTGAAGGCTACTATGTGTACTGA-AAAGATTTGGTCATG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACTGATAAA-ACTTGGTCACA
* * *
952223 TATGTAGTACTATGTGAAGGCTACTACGTGGACTG-TAAAACTTGATCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACTGATAAAACTTGGTCACA
* *
952273 TGTGTAGTACTATGTGAAGACTACTATGTGTA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTA
952305 TCGAATGATA
Statistics
Matches: 112, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
50 39 0.35
51 72 0.64
52 1 0.01
ACGTcount: A:0.30, C:0.12, G:0.24, T:0.33
Consensus pattern (51 bp):
TGTGTAGTACTATGTGAAGGCTACTACGTGTACTGATAAAACTTGGTCACA
Found at i:952201 original size:26 final size:26
Alignment explanation
Indices: 952121--952203 Score: 68
Period size: 26 Copynumber: 3.2 Consensus size: 26
952111 GATGAACACG
*
952121 TGTGTAGTACTATGTGAAGGCTACTA
1 TGTGTAGTACTAAGTGAAGGCTACTA
* *
952147 CGTGTA-T-CGATAAAT-AATGG-TCAC-A
1 TGTGTAGTAC--TAAGTGAA-GGCT-ACTA
952172 TGTGTAGTACTAAGTGAAGGCTACTA
1 TGTGTAGTACTAAGTGAAGGCTACTA
952198 TGTGTA
1 TGTGTA
952204 CTGAAAAGAT
Statistics
Matches: 43, Mismatches: 5, Indels: 18
0.65 0.08 0.27
Matches are distributed among these distances:
24 1 0.02
25 18 0.42
26 23 0.53
27 1 0.02
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (26 bp):
TGTGTAGTACTAAGTGAAGGCTACTA
Done.