genome.fa.s1339.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold195
Parameters: 2 7 7 80 10 50 1000
Length:  1506968

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 550 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1272314--1272428	5	23.2	5	94	1	205	39	20	0	39	1.59
1278998--1279068	37	1.9	37	100	0	142	30	8	19	40	1.81
1283002--1283077	25	3.0	27	81	11	90	39	13	14	32	1.85
1286394--1286511	62	2.0	62	83	5	152	50	3	4	42	1.38
1291414--1291552	20	6.9	20	73	1	107	16	29	20	33	1.95
1291455--1291561	40	2.6	41	89	1	153	16	29	21	31	1.96
1292456--1292570	54	2.2	53	90	1	176	20	18	32	28	1.96
1301185--1301236	12	4.5	11	77	13	50	76	0	21	1	0.87
1303248--1303287	16	2.5	16	87	0	53	20	7	0	72	1.08
1303845--1303906	11	5.9	11	74	11	58	30	6	0	62	1.20
1306030--1306063	16	2.1	16	94	0	59	20	14	23	41	1.89
1310885--1312308	87	16.3	87	93	1	2187	29	12	24	33	1.92
1310618--1312308	261	6.4	263	89	2	2219	29	13	24	32	1.93
1313360--1314029	336	2.0	334	96	2	1229	21	20	18	39	1.93
1314162--1314201	21	2.0	20	85	9	55	32	0	5	62	1.17
1316946--1317002	18	3.1	18	76	18	55	38	8	0	52	1.33
1317954--1318007	18	2.9	18	75	8	54	61	1	0	37	1.07
1329689--1329775	25	3.5	23	80	10	77	33	21	27	17	1.96
1332896--1332927	16	2.0	16	93	0	55	46	6	0	46	1.27
1335407--1335436	15	2.0	15	93	0	51	30	6	13	50	1.67
1343310--1343405	33	2.8	34	79	3	104	34	16	20	28	1.95
1350562--1350590	12	2.3	13	94	5	51	65	6	6	20	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1358835--1358890	29	1.9	29	88	0	85	46	12	12	28	1.78
1359900--1359947	22	2.1	24	84	7	64	64	0	4	31	1.12
1361652--1361696	23	2.0	23	87	12	67	31	15	22	31	1.95
1376435--1376477	14	3.1	14	76	6	52	27	16	0	55	1.41
1376432--1376512	27	3.0	27	83	3	110	33	20	1	44	1.60
1376432--1376533	13	7.7	13	69	10	55	33	20	1	44	1.63
1376437--1376512	26	2.9	27	82	4	91	34	19	1	44	1.59
1376436--1376523	27	3.3	26	79	6	88	34	18	2	45	1.62
1381370--1381426	28	2.0	28	90	6	89	38	5	0	56	1.22
1383181--1383925	372	2.0	372	100	0	1490	30	24	13	31	1.93
1389972--1390028	28	2.0	28	90	6	89	38	5	0	56	1.22
1396927--1396964	19	2.1	18	85	14	51	39	0	7	52	1.31
1397297--1397359	20	2.8	22	79	18	60	38	0	3	58	1.14
1409591--1410164	263	2.2	263	88	2	850	31	19	21	26	1.98
1409854--1410577	219	3.3	219	88	2	1015	32	18	20	28	1.96
1410336--1410681	175	2.0	175	93	1	586	32	18	21	28	1.96
1409633--1410606	482	2.0	481	80	5	1076	32	18	21	28	1.96
1410340--1410749	175	2.3	175	85	4	497	32	18	20	28	1.97
1410117--1411188	393	2.7	391	88	2	1592	32	18	20	27	1.96
1410730--1411967	175	7.1	175	72	11	743	33	18	20	27	1.96
1410729--1412076	438	3.1	436	76	8	1467	33	18	20	27	1.96
1410515--1411846	219	6.1	218	80	5	1384	33	19	20	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1410117--1411318	393	3.1	387	83	6	1447	32	18	20	27	1.96
1410908--1411506	263	2.3	263	85	2	749	33	19	21	26	1.97
1410903--1411817	482	1.9	480	82	5	1112	32	19	21	26	1.97
1411386--1412357	394	2.5	394	91	0	1572	32	18	20	28	1.96
1411605--1412020	175	2.4	174	87	3	541	32	18	19	29	1.96
1411780--1412186	219	1.9	219	91	1	672	33	18	18	29	1.95
1411784--1412251	219	2.1	219	87	3	665	33	17	20	28	1.96
1409635--1412327	44	61.6	43	65	14	484	32	18	20	27	1.96
1425056--1425164	50	2.2	50	79	0	119	31	22	27	19	1.97
1427431--1427476	24	1.9	24	90	0	74	34	15	21	28	1.94
1432728--1432850	50	2.5	50	81	2	140	27	24	28	19	1.99
1439760--1439802	20	2.2	20	91	8	70	55	0	27	16	1.41
1443836--1443910	33	2.2	34	88	2	107	44	12	5	38	1.64
1467335--1467388	27	2.0	27	88	0	81	29	9	25	35	1.87
1471374--1471406	17	1.9	17	93	0	57	21	12	9	57	1.62
1473685--1474426	27	27.6	27	81	3	692	42	19	19	19	1.90
1474804--1474929	28	4.4	28	79	7	126	26	23	21	28	1.99
1479060--1479119	28	2.1	28	96	0	111	56	16	3	23	1.55
1481244--1481288	22	2.0	22	83	8	56	20	2	15	62	1.43
1491844--1491887	22	2.0	22	100	0	88	36	0	22	40	1.54
1496252--1496292	22	1.9	21	95	5	73	41	17	7	34	1.77
1499458--1499612	76	2.0	77	97	2	294	27	6	25	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1505711--1505950	41	5.9	41	80	3	196	34	17	26	21	1.95
1505721--1505951	123	1.9	123	80	1	275	34	16	26	22	1.95
1505728--1505950	82	2.7	81	78	2	223	33	17	27	21	1.96
1506896--1506960	32	2.0	32	100	0	130	47	6	21	24	1.73

Tables:   1   2   3   4   5

The End!