Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1319

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2046
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38


Found at i:1086 original size:30 final size:30

Alignment explanation


    Indices: 1050--1109  Score: 95
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       1040 CTTTACTAGA

                     *                     
       1050 AAACAAATCTCTTT-GCATAAAACGGATATT
          1 AAACAAATCGCTTTAG-ATAAAACGGATATT

                                          
       1080 AAACAAATCGCTTTAGATAAAACGGATATT
          1 AAACAAATCGCTTTAGATAAAACGGATATT

       1110 TTACATATAC


Statistics
Matches: 28,  Mismatches: 1, Indels: 2
        0.90            0.03        0.06

Matches are distributed among these distances:
  30   27  0.96
  31    1  0.04

ACGTcount: A:0.45, C:0.15, G:0.12, T:0.28


Consensus pattern (30 bp):   
AAACAAATCGCTTTAGATAAAACGGATATT
Done.