Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4174

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 342

Length: 571
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37


Found at i:110 original size:45 final size:46

Alignment explanation


    Indices: 44--177  Score: 191
    Period size: 47  Copynumber: 2.9  Consensus size: 46

         34 TTTTTTTTCC

                          *  *           *       *        
         44 TTTTTTT-ACTCAAGGCTCCCTTTGTAGGGTTTCACCCTGGTC-TT
          1 TTTTTTTGACTCAAAGCGCCCTTTGTAGGCTTTCACCTTGGTCTTT

                            *                         *    
         88 TTTTTTTGACTCAAAGAGCCCTTTGTAGGCTTTCACCTTGGCCCTTT
          1 TTTTTTTGACTCAAAGCGCCCTTTGTAGGCTTTCACCTTGG-TCTTT

                                                       
        135 TTTTTTTGACTCAAAGCGCCCTTTGTAGGCTTTCACCTTGGTC
          1 TTTTTTTGACTCAAAGCGCCCTTTGTAGGCTTTCACCTTGGTC

        178 CCACCTTTTA


Statistics
Matches: 79,  Mismatches: 8, Indels: 4
        0.87            0.09        0.04

Matches are distributed among these distances:
  44    7  0.09
  45   28  0.35
  46    2  0.03
  47   42  0.53

ACGTcount: A:0.13, C:0.25, G:0.18, T:0.43


Consensus pattern (46 bp):   
TTTTTTTGACTCAAAGCGCCCTTTGTAGGCTTTCACCTTGGTCTTT

Done.