Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2459

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 563

Length: 939
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37


Found at i:522 original size:15 final size:15

Alignment explanation


    Indices: 502--532  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        492 ACTAGAATTG

                           
        502 AATTGCTTGGAGTCA
          1 AATTGCTTGGAGTCA

                           
        517 AATTGCTTGGAGTCA
          1 AATTGCTTGGAGTCA

             
        532 A
          1 A

        533 TCGTAATCAC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.29, C:0.13, G:0.26, T:0.32


Consensus pattern (15 bp):   
AATTGCTTGGAGTCA
Done.