Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold791

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6473
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35


Found at i:6344 original size:16 final size:16

Alignment explanation


    Indices: 6323--6403  Score: 117
    Period size: 16  Copynumber: 5.1  Consensus size: 16

       6313 CTCGCTGTAT

                        *   
       6323 TGGAATAGAGGCATAA
          1 TGGAATAGAGGCGTAA

                            
       6339 TGGAATAGAGGCGTAA
          1 TGGAATAGAGGCGTAA

                     *      
       6355 TGGAATAGAAGCGTAA
          1 TGGAATAGAGGCGTAA

              *      *      
       6371 TGAAATAGAAGCGTAA
          1 TGGAATAGAGGCGTAA

                       *    
       6387 TGGAATAGAGGTGTAA
          1 TGGAATAGAGGCGTAA

             
       6403 T
          1 T

       6404 AGCAAATCAA


Statistics
Matches: 59,  Mismatches: 6, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  16   59  1.00

ACGTcount: A:0.42, C:0.05, G:0.32, T:0.21


Consensus pattern (16 bp):   
TGGAATAGAGGCGTAA

Done.