Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4239

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 337

Length: 562
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.32


Found at i:409 original size:21 final size:21

Alignment explanation


    Indices: 383--438  Score: 94
    Period size: 21  Copynumber: 2.7  Consensus size: 21

        373 AACAGCGGTG

                         *       
        383 GCGGTGAGATTAGTTACTGTA
          1 GCGGTGAGATTAGATACTGTA

                       *         
        404 GCGGTGAGATTGGATACTGTA
          1 GCGGTGAGATTAGATACTGTA

                          
        425 GCGGTGAGATTAGA
          1 GCGGTGAGATTAGA

        439 AACAATGGTG


Statistics
Matches: 32,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  21   32  1.00

ACGTcount: A:0.25, C:0.09, G:0.38, T:0.29


Consensus pattern (21 bp):   
GCGGTGAGATTAGATACTGTA
Done.