Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3078

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 481

Length: 802
ACGTcount: A:0.42, C:0.14, G:0.11, T:0.33


Found at i:607 original size:20 final size:21

Alignment explanation


    Indices: 563--605  Score: 77
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        553 AACAACTCAC

                      *          
        563 TTAGTTTAATGAATAAAAAGT
          1 TTAGTTTAATCAATAAAAAGT

                                 
        584 TTAGTTTAATCAATAAAAAGT
          1 TTAGTTTAATCAATAAAAAGT

             
        605 T
          1 T

        606 AGAATCTCAC


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.47, C:0.02, G:0.12, T:0.40


Consensus pattern (21 bp):   
TTAGTTTAATCAATAAAAAGT
Done.