Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold850

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5247
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.31

Warning! 386 characters in sequence are not A, C, G, or T


Found at i:4639 original size:20 final size:19

Alignment explanation


    Indices: 4614--4660  Score: 67
    Period size: 20  Copynumber: 2.4  Consensus size: 19

       4604 TTTGGTTCAT

                        *      
       4614 TTGAGCTCAAGTTAGCTCA
          1 TTGAGCTCAAGTCAGCTCA

                             *  
       4633 TTCGAGCTCAAGTCAGCACA
          1 TT-GAGCTCAAGTCAGCTCA

                    
       4653 TTGAGCTC
          1 TTGAGCTC

       4661 GTTATTAGCT


Statistics
Matches: 25,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  19    8  0.32
  20   17  0.68

ACGTcount: A:0.26, C:0.26, G:0.21, T:0.28


Consensus pattern (19 bp):   
TTGAGCTCAAGTCAGCTCA
Done.